Query psy13665
Match_columns 105
No_of_seqs 49 out of 51
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 17:19:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wty_A Hypothetical protein TT 18.9 19 0.00065 23.5 -0.5 12 20-31 84-95 (119)
2 2amn_A Cathelicidin; linear he 17.9 7.9 0.00027 21.6 -2.1 16 65-80 4-19 (26)
3 1wwp_A Hypothetical protein TT 17.7 21 0.00072 23.3 -0.5 11 20-30 86-96 (119)
4 3j00_Z Cell division protein F 15.6 86 0.0029 20.7 2.1 37 30-66 44-87 (98)
5 1jog_A Hypothetical protein HI 13.0 34 0.0012 23.5 -0.5 11 20-30 108-118 (146)
6 1xc0_A Pardaxin P-4, PA4; BEND 12.1 39 0.0014 19.5 -0.3 25 78-102 3-29 (33)
7 4he6_A Peptidase family U32; u 10.3 1.1E+02 0.0036 18.9 1.2 24 30-53 26-49 (89)
8 2gwm_A 65 kDa virulence protei 9.9 76 0.0026 22.6 0.5 29 39-67 146-180 (200)
9 1qw2_A Conserved hypothetical 8.7 2.4E+02 0.0082 19.3 2.6 42 39-89 10-51 (102)
10 3bbn_H Ribosomal protein S8; s 8.3 1.9E+02 0.0065 20.0 2.0 12 68-79 104-115 (134)
No 1
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=18.88 E-value=19 Score=23.47 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=8.8
Q ss_pred eeeeecCchhhh
Q psy13665 20 TTVHTYDKPLQR 31 (105)
Q Consensus 20 ~~~~~~~~~~~~ 31 (105)
.|||+||.-.-.
T Consensus 84 ~~vH~Y~~~~a~ 95 (119)
T 1wty_A 84 LTNHTYDEALAE 95 (119)
T ss_dssp HGGGTTSHHHHH
T ss_pred HhcccccHHHHH
Confidence 489999976443
No 2
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=17.87 E-value=7.9 Score=21.61 Aligned_cols=16 Identities=50% Similarity=1.032 Sum_probs=13.0
Q ss_pred CCcceeeeecccceee
Q psy13665 65 PDWPLVVLTSMAGYAM 80 (105)
Q Consensus 65 RLTaLVVlTamAGYAM 80 (105)
|.+.+|+.|+.|||-+
T Consensus 4 Rf~P~vi~tv~ag~nl 19 (26)
T 2amn_A 4 RVWPLVIRTVIAGYNL 19 (26)
T ss_dssp CSCTTHHHHHHHHHSS
T ss_pred eeeeeEEEEEeehhHH
Confidence 6778889999999854
No 3
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=17.70 E-value=21 Score=23.32 Aligned_cols=11 Identities=64% Similarity=1.081 Sum_probs=8.3
Q ss_pred eeeeecCchhh
Q psy13665 20 TTVHTYDKPLQ 30 (105)
Q Consensus 20 ~~~~~~~~~~~ 30 (105)
.|||+||.-.-
T Consensus 86 ~~vH~Y~~~~~ 96 (119)
T 1wwp_A 86 LTVHTYNEPLA 96 (119)
T ss_dssp HGGGTTSHHHH
T ss_pred HhcccccHhhH
Confidence 47999997543
No 4
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=15.64 E-value=86 Score=20.73 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=25.7
Q ss_pred hhhccccCCCcceecCCce-----eeeec--cccccccccccCC
Q psy13665 30 QRKHVKSGALDPVLVPGGV-----AIETN--KRRKDAKVIPEPD 66 (105)
Q Consensus 30 ~~~~~~~~~l~~v~~~~g~-----ai~tn--~~rkd~kLSK~RL 66 (105)
+++|+..+.++..+.|... .+|-| ++..|+.|-..||
T Consensus 44 el~~vs~~~Ir~~i~~~~~~g~FFt~DL~~iq~alE~~~~~~~~ 87 (98)
T 3j00_Z 44 ERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLQHARL 87 (98)
T ss_dssp CCCSSCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred ceeecCHHHHHHHHHHhccCCCceeeCHHHHHHHHHHHHHHhcc
Confidence 5678888888888887643 33444 3777777777665
No 5
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=12.96 E-value=34 Score=23.50 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=8.4
Q ss_pred eeeeecCchhh
Q psy13665 20 TTVHTYDKPLQ 30 (105)
Q Consensus 20 ~~~~~~~~~~~ 30 (105)
.|||+||.-.-
T Consensus 108 ~tvH~Y~e~~a 118 (146)
T 1jog_A 108 ITSHTYDQEKA 118 (146)
T ss_dssp TGGGTTSHHHH
T ss_pred HhcccccHhhH
Confidence 48999998544
No 6
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=12.10 E-value=39 Score=19.50 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=15.1
Q ss_pred eeecCcCccHHH--HHHHHhhhhhhhc
Q psy13665 78 YAMAPAPFEWSS--FLICFSQLQLLHS 102 (105)
Q Consensus 78 YAMAP~Pfd~st--Fl~~slGTgL~Sa 102 (105)
||+-|-.+.-+- -++.++|.+|.|+
T Consensus 3 falipkiissplfktllsavgsalsss 29 (33)
T 1xc0_A 3 FALIPKIISSPLFKTLLSAVGSALSSS 29 (33)
T ss_dssp SSSHHHHTTTTTHHHHHHHHHHHTTTT
T ss_pred hhhhhHHHccHHHHHHHHHHHHHhhcc
Confidence 344444333333 3678899999876
No 7
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=10.26 E-value=1.1e+02 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=18.9
Q ss_pred hhhccccCCCcceecCCceeeeec
Q psy13665 30 QRKHVKSGALDPVLVPGGVAIETN 53 (105)
Q Consensus 30 ~~~~~~~~~l~~v~~~~g~ai~tn 53 (105)
||.+++-|.==|++.|+|.++.+.
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~ 49 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQV 49 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEE
Confidence 788888887778999999665443
No 8
>2gwm_A 65 kDa virulence protein; SPVB, ADP-ribosyltransferase, transferase, toxin; 1.50A {Salmonella typhimurium} PDB: 2gwl_A*
Probab=9.93 E-value=76 Score=22.61 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=21.7
Q ss_pred CcceecCCceeeeecc------ccccccccccCCc
Q psy13665 39 LDPVLVPGGVAIETNK------RRKDAKVIPEPDW 67 (105)
Q Consensus 39 l~~v~~~~g~ai~tn~------~rkd~kLSK~RLT 67 (105)
=.|||-|.|+-....+ +.+..+|++.++|
T Consensus 146 E~EVLippgt~FkV~~i~~~~~~~~~~~l~~~~~~ 180 (200)
T 2gwm_A 146 EAEMLFPPNTKLKIESIVNCGSQDFASQLSKLRLS 180 (200)
T ss_dssp SCCEEECSCEEEEEEEEEESSSHHHHHHHHTSCBC
T ss_pred ccEEEECCCCEEEEEEEEeccCCcceEEeEEeecc
Confidence 3689999998877653 4567788888876
No 9
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=8.69 E-value=2.4e+02 Score=19.35 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=27.4
Q ss_pred CcceecCCceeeeeccccccccccccCCcceeeeecccceeecCcCccHHH
Q psy13665 39 LDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSS 89 (105)
Q Consensus 39 l~~v~~~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMAP~Pfd~st 89 (105)
++|+...+++.+.. .-+|-| +-|+++++.-||+|.- .+|...
T Consensus 10 v~~i~i~g~~~~gi-----~v~Lpk---~~Ll~i~~~kG~imCG-alDv~~ 51 (102)
T 1qw2_A 10 IDSIEIGGKVYQFF-----KSDLGN---APLLFIKGSKGYAMCG-YLNMET 51 (102)
T ss_dssp EEEEEETTEEEEEE-----EECCSS---SCEEEEECSSCEEECT-TCCHHH
T ss_pred EEEEEECCEEEEEE-----EEEcCC---CcEEEEEeCceEEEec-ccChhH
Confidence 45566666655543 234555 4589999999999984 566554
No 10
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=8.26 E-value=1.9e+02 Score=20.04 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=8.6
Q ss_pred ceeeeeccccee
Q psy13665 68 PLVVLTSMAGYA 79 (105)
Q Consensus 68 aLVVlTamAGYA 79 (105)
+++++||..|.+
T Consensus 104 Gi~IlSTskGim 115 (134)
T 3bbn_H 104 GIAILSTSRGIM 115 (134)
T ss_dssp SEEEEEESSSEE
T ss_pred eEEEEECCcccc
Confidence 677777777754
Done!