Query psy13665
Match_columns 105
No_of_seqs 49 out of 51
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 17:19:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13665.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13665hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wtya_ a.24.16.2 (A:) Probabl 12.2 18 0.0013 23.0 -0.4 11 20-30 83-93 (116)
2 d1a9xb1 c.8.3.1 (B:1502-1652) 12.0 30 0.0022 23.1 0.7 11 68-78 28-38 (151)
3 d2cu3a1 d.15.3.2 (A:1-63) Unch 9.9 1.3E+02 0.0092 16.5 3.0 11 44-54 26-36 (63)
4 d1joga_ a.24.16.2 (A:) Hypothe 9.5 25 0.0019 22.7 -0.4 12 20-31 102-113 (135)
5 d1tygb_ d.15.3.2 (B:) Thiamin 7.9 1.8E+02 0.013 15.7 3.2 11 44-54 28-38 (65)
6 d2gkea2 d.21.1.1 (A:131-274) D 7.8 32 0.0024 22.2 -0.5 12 43-54 54-65 (144)
7 d1qipa_ d.32.1.1 (A:) Glyoxala 7.3 86 0.0063 18.4 1.5 18 44-61 158-175 (176)
8 d1thxa_ c.47.1.1 (A:) Thioredo 6.5 1E+02 0.0076 17.0 1.5 23 50-72 5-27 (108)
9 d2mpra_ f.4.3.2 (A:) Maltopori 6.2 97 0.0071 22.6 1.5 16 11-27 369-384 (427)
10 d2j0wa1 c.73.1.3 (A:3-294) Asp 6.1 79 0.0058 21.5 0.9 10 69-78 33-42 (292)
No 1
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=12.21 E-value=18 Score=23.03 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=8.5
Q ss_pred eeeeecCchhh
Q psy13665 20 TTVHTYDKPLQ 30 (105)
Q Consensus 20 ~~~~~~~~~~~ 30 (105)
.|+||||....
T Consensus 83 ~tsHtYde~~A 93 (116)
T d1wtya_ 83 LTNHTYDEALA 93 (116)
T ss_dssp HGGGTTSHHHH
T ss_pred hhchhcCHHHH
Confidence 58999997554
No 2
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.02 E-value=30 Score=23.09 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=9.4
Q ss_pred ceeeeecccce
Q psy13665 68 PLVVLTSMAGY 78 (105)
Q Consensus 68 aLVVlTamAGY 78 (105)
=+|.-|+|.||
T Consensus 28 E~vFnT~mtGY 38 (151)
T d1a9xb1 28 EVVFNTSMTGY 38 (151)
T ss_dssp EEEEECCSSCH
T ss_pred EEEEEecccch
Confidence 37889999998
No 3
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=9.89 E-value=1.3e+02 Score=16.54 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=9.5
Q ss_pred cCCceeeeecc
Q psy13665 44 VPGGVAIETNK 54 (105)
Q Consensus 44 ~~~g~ai~tn~ 54 (105)
.++++|++-|+
T Consensus 26 ~~~~vAV~vN~ 36 (63)
T d2cu3a1 26 ELKGVAVLLNE 36 (63)
T ss_dssp CGGGEEEEETT
T ss_pred CCCcEEEEECC
Confidence 46899999998
No 4
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=9.54 E-value=25 Score=22.71 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=9.2
Q ss_pred eeeeecCchhhh
Q psy13665 20 TTVHTYDKPLQR 31 (105)
Q Consensus 20 ~~~~~~~~~~~~ 31 (105)
.|+||||.-.-.
T Consensus 102 ~tsHtYde~~A~ 113 (135)
T d1joga_ 102 ITSHTYDQEKAM 113 (135)
T ss_dssp TGGGTTSHHHHH
T ss_pred hhccccCHHHHH
Confidence 589999976554
No 5
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=7.90 E-value=1.8e+02 Score=15.73 Aligned_cols=11 Identities=36% Similarity=0.235 Sum_probs=9.6
Q ss_pred cCCceeeeecc
Q psy13665 44 VPGGVAIETNK 54 (105)
Q Consensus 44 ~~~g~ai~tn~ 54 (105)
.++++||+-|+
T Consensus 28 ~~~~vAVevN~ 38 (65)
T d1tygb_ 28 ENKIVIVERNK 38 (65)
T ss_dssp TTSCCEEEETT
T ss_pred CCCcEEEEECC
Confidence 47899999998
No 6
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=7.77 E-value=32 Score=22.22 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=9.7
Q ss_pred ecCCceeeeecc
Q psy13665 43 LVPGGVAIETNK 54 (105)
Q Consensus 43 ~~~~g~ai~tn~ 54 (105)
+-|.|+|+++-+
T Consensus 54 ~fp~g~Nv~f~~ 65 (144)
T d2gkea2 54 RFPERVNAGFMQ 65 (144)
T ss_dssp TCTTCCEEEEEE
T ss_pred cccccccceEEE
Confidence 458999999865
No 7
>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.30 E-value=86 Score=18.40 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.1
Q ss_pred cCCceeeeeccccccccc
Q psy13665 44 VPGGVAIETNKRRKDAKV 61 (105)
Q Consensus 44 ~~~g~ai~tn~~rkd~kL 61 (105)
-|.|.-||..|++|=+.|
T Consensus 158 DPdG~~IElvq~~~~~~~ 175 (176)
T d1qipa_ 158 DPDGYWIEILNPNKMATL 175 (176)
T ss_dssp CTTCCEEEEECTTTGGGC
T ss_pred CCCCCEEEEEeCCCCCcc
Confidence 599999999999886554
No 8
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}
Probab=6.54 E-value=1e+02 Score=17.00 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=15.6
Q ss_pred eeeccccccccccccCCcceeee
Q psy13665 50 IETNKRRKDAKVIPEPDWPLVVL 72 (105)
Q Consensus 50 i~tn~~rkd~kLSK~RLTaLVVl 72 (105)
++.++.+++..+.+..-..||..
T Consensus 5 ~~lt~~~f~~~v~~~~~~vlv~f 27 (108)
T d1thxa_ 5 ITITDAEFESEVLKAEQPVLVYF 27 (108)
T ss_dssp EECCGGGHHHHTTTCSSCEEEEE
T ss_pred eECCHHHHHHHHHhCCCcEEEEE
Confidence 56788888888866654455544
No 9
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella typhimurium [TaxId: 90371]}
Probab=6.15 E-value=97 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=12.1
Q ss_pred CCCceeEeeeeeeecCc
Q psy13665 11 PRPELKVTATTVHTYDK 27 (105)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (105)
.||||++-+|-+ .+|+
T Consensus 369 sRPelR~faTy~-~w~~ 384 (427)
T d2mpra_ 369 SRPAIRIFATYA-KWDE 384 (427)
T ss_dssp CCSEEEEEEEEE-EEEE
T ss_pred CCcEEEEEEEEE-eccc
Confidence 599999998765 4444
No 10
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=6.14 E-value=79 Score=21.55 Aligned_cols=10 Identities=60% Similarity=0.810 Sum_probs=8.7
Q ss_pred eeeeecccce
Q psy13665 69 LVVLTSMAGY 78 (105)
Q Consensus 69 LVVlTamAGY 78 (105)
.||+|||+|.
T Consensus 33 vVVVSA~~gv 42 (292)
T d2j0wa1 33 LVVLSASAGI 42 (292)
T ss_dssp EEEECCCTTH
T ss_pred EEEEeCCCCC
Confidence 6899999985
Done!