BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy13665
TSSKNSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAK
VIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF

High Scoring Gene Products

Symbol, full name Information P value
COX10
Protoheme IX farnesyltransferase, mitochondrial 		protein from Bos taurus 0.00060

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13665
        (105 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|A5D7D6 - symbol:COX10 "Uncharacterized protein"...    95  0.00060   1


>UNIPROTKB|A5D7D6 [details] [associations]
            symbol:COX10 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017004 "cytochrome complex assembly" evidence=IEA]
            [GO:0009060 "aerobic respiration" evidence=IEA] [GO:0008535
            "respiratory chain complex IV assembly" evidence=IEA] [GO:0006784
            "heme a biosynthetic process" evidence=IEA] [GO:0004129
            "cytochrome-c oxidase activity" evidence=IEA] [GO:0000266
            "mitochondrial fission" evidence=IEA] [GO:0048034 "heme O
            biosynthetic process" evidence=IEA] [GO:0031966 "mitochondrial
            membrane" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0008495 "protoheme IX farnesyltransferase
            activity" evidence=IEA] HAMAP:MF_00154 InterPro:IPR000537
            InterPro:IPR006369 InterPro:IPR016315 Pfam:PF01040
            PIRSF:PIRSF001773 PROSITE:PS00943 GO:GO:0016021 GO:GO:0031966
            GO:GO:0017004 GO:GO:0006784 GO:GO:0009060 GO:GO:0004129
            GO:GO:0000266 GO:GO:0008535 eggNOG:COG0109 KO:K02257 GO:GO:0008495
            GO:GO:0048034 TIGRFAMs:TIGR01473 HOGENOM:HOG000189335 CTD:1352
            HOVERGEN:HBG051084 OMA:VPFDSQM OrthoDB:EOG49W2FQ
            GeneTree:ENSGT00390000008408 EMBL:DAAA02048941 EMBL:DAAA02048942
            EMBL:BC140517 IPI:IPI00702410 RefSeq:NP_001091482.1
            UniGene:Bt.43087 STRING:A5D7D6 Ensembl:ENSBTAT00000020336
            GeneID:511440 KEGG:bta:511440 InParanoid:A5D7D6 NextBio:20869931
            Uniprot:A5D7D6
        Length = 443

 Score = 95 (38.5 bits), Expect = 0.00060, P = 0.00060
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query:    69 LVVLTSMAGYAMAPAPFEWSSFLICF 94
             LVV T+ AG+A+APAPF+WS FL+ F
Sbjct:   168 LVVSTTSAGFALAPAPFDWSCFLLTF 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.43    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.60u 0.10s 11.70t   Elapsed:  00:00:04
  Total cpu time:  11.60u 0.10s 11.70t   Elapsed:  00:00:04
  Start:  Thu Aug 15 12:50:49 2013   End:  Thu Aug 15 12:50:53 2013

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