RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13665
         (105 letters)



>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
          domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 86

 Score = 23.6 bits (51), Expect = 3.6
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 43 LVPGGVAIETNKRRKDAKVIPEPD 66
          L  G   +   K+R++A  I   D
Sbjct: 31 LFRGDTVLLKGKKRREAVCIVLSD 54


>d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon
          Thermoplasma acidophilum [TaxId: 2303]}
          Length = 102

 Score = 23.1 bits (50), Expect = 5.5
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 8/42 (19%)

Query: 39 LDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAM 80
          +D + + G V                 + PL+ +    GYAM
Sbjct: 10 IDSIEIGGKVYQ--------FFKSDLGNAPLLFIKGSKGYAM 43


>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
          {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 91

 Score = 22.4 bits (48), Expect = 8.6
 Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 2/28 (7%)

Query: 43 LVPGGVAIETNKRRKDAKVIP--EPDWP 68
             G V      R+   +V      D  
Sbjct: 36 AEIGDVVEIEKVRKTVGRVYRARPEDEN 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 366,203
Number of extensions: 14016
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)