BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13666
(278 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|189502185|ref|YP_001957902.1| hypothetical protein Aasi_0795 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497626|gb|ACE06173.1| hypothetical protein Aasi_0795 [Candidatus Amoebophilus asiaticus
5a2]
Length = 322
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/271 (45%), Positives = 161/271 (59%), Gaps = 6/271 (2%)
Query: 11 YVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE 70
Y + FPE EKNRNHY R + YL++HYTV NF + FTS+ S+HYV++E
Sbjct: 51 YQVLEFPEEEKNRNHYGDRGTEDIAYLVMHYTVCNFPATMRLFTSDIPEGRVSAHYVVTE 110
Query: 71 KE-GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
+E + + GG V Q+VP+ AWHAGI WR ++ LN SIG+ VN G VG++ N+
Sbjct: 111 EERERDVQGGMVFQVVPEEKTAWHAGISYWRGEQGLNLRSIGVENVNKGFVGKESEYPNW 170
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
+ FD+ QI +LG L + IV+ + I PQ V+GH DIAP K DPG LFPW KLY YG+GA
Sbjct: 171 FTFDKKQIRSLGTLSQYIVNSYNIAPQNVVGHADIAPTRKQDPGILFPWEKLYTHYGVGA 230
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT-----ITNKRSVIRAFK 244
WL+ DE +AI +F P P+ + L L+AYGYN T S+++AFK
Sbjct: 231 WLTEDERDEKAIAERFTPKEKLPQGISEAFLLTCLQAYGYNCTEVGYMTPENTSIVKAFK 290
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKY 275
HFS NQ P A I DM W W L KY
Sbjct: 291 AHFSRNQYPYTYDASIDRTDMLWVWGLSEKY 321
>gi|148284023|ref|YP_001248113.1| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str.
Boryong]
gi|146739462|emb|CAM79114.1| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str.
Boryong]
Length = 366
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 177/296 (59%), Gaps = 26/296 (8%)
Query: 4 SIHGMPGYVIDPFPEWEKNRNHYDSRD-GMSVKYLILHYTVYNFAHIITAFTSNRAH-NL 61
S +G+ GY ID FPE E NRNHY R+ S+KYLI+HYTV NF+ FT N+
Sbjct: 73 SDYGITGYAIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTAQEFTVNKPLLGQ 132
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
SSH VI+E E P G +I VP+N A+HAG+ W+ D NLNSMSIGI VN G
Sbjct: 133 VSSHIVITEAEEGKTPAGILISFVPENKIAYHAGVSAWQNDTNLNSMSIGIEHVNRG--- 189
Query: 122 EKFRSTN----YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP 177
F + N + +D++QI T G++ I+ ++ IKP +VLGH+DIA K DPGPLFP
Sbjct: 190 --FNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKSDPGPLFP 247
Query: 178 WGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV------ 231
WG+LY +Y +GAWL+ E+ + I K+ P P K+D FL+LL+ YGY++
Sbjct: 248 WGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYHIPDNVDL 307
Query: 232 --------TITNKRSVIRAFKTHFSANQNPERI-YADITTEDMFWAWALVAKYGSM 278
T+ +I AFK HFSANQ+PE A IT+ D +W WAL AKY S
Sbjct: 308 NKTDNPKQTVALCAPLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKYQSQ 363
>gi|189184417|ref|YP_001938202.1| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str.
Ikeda]
gi|189181188|dbj|BAG40968.1| putative N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi
str. Ikeda]
Length = 365
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 176/296 (59%), Gaps = 26/296 (8%)
Query: 4 SIHGMPGYVIDPFPEWEKNRNHYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNR-AHNL 61
S +G+ GY ID FPE E NRNHY R +KYLI+HYTV NFA FT N+
Sbjct: 72 SDYGITGYAIDEFPENEDNRNHYTQRKQDTPIKYLIMHYTVGNFASTAQEFTVNKPLLGQ 131
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
SSH VI+E E P G +I VP+N A+HAG+ W+ D NLNSMSIGI VN G
Sbjct: 132 VSSHIVITEAEEGKTPAGILISFVPENKIAYHAGVSAWQNDTNLNSMSIGIEHVNRG--- 188
Query: 122 EKFRSTN----YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP 177
F + N ++ +D++QI T G++ I+ ++ IKP +VLGH+DIA K DPGPLFP
Sbjct: 189 --FNTVNAKKEWFCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKSDPGPLFP 246
Query: 178 WGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV------ 231
WG+LY +Y +GAWL+ E+ + I K+ P P K+D FL+LL+ YGY++
Sbjct: 247 WGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYHIPDNVDL 306
Query: 232 --------TITNKRSVIRAFKTHFSANQNPERI-YADITTEDMFWAWALVAKYGSM 278
T+ +I AFK HFSANQ+PE A IT+ D +W WAL AKY S
Sbjct: 307 NKTDNPKQTVALCAPLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKYQSQ 362
>gi|344923242|ref|ZP_08776703.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Odyssella
thessalonicensis L13]
Length = 335
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 170/283 (60%), Gaps = 16/283 (5%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDG---MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
GY++ F +NRNH+ R S+K L+LHYTV NF + FT++ S+ Y
Sbjct: 54 GYMVPAFEAPYQNRNHFSDRSQGSLTSIKSLVLHYTVINFIDTLKTFTADIPERRVSATY 113
Query: 67 VISEKEG-------KYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV 119
V+SE E +P G+VIQIVP++ +AWHAG+ +WR LN S+GI + N G
Sbjct: 114 VVSEAESIGHETDIYEIPAGQVIQIVPESKKAWHAGVSQWRELTGLNDSSLGIEVANKGF 173
Query: 120 VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWG 179
E ++YPFD+ Q+ +G L + IV ++ I P YV+GH DIAP K DPG LFPWG
Sbjct: 174 T-EDPNGLHWYPFDKEQMKVVGKLSRAIVQKYHIPPTYVVGHADIAPQRKQDPGILFPWG 232
Query: 180 KLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK--- 236
+LY +YG+GAWL P+E + ++ ++ P P P+ + + LK YGY + T+
Sbjct: 233 ELYTNYGVGAWLDPEEQHNKDLIERYTPREPLPQGISVAFMSKYLKEYGYPIQETDAVTD 292
Query: 237 --RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
R+V+RAFK HFS NQ+PE+ A + +DM+W WAL AKY S
Sbjct: 293 EFRNVLRAFKAHFSQNQHPEQFNAPLNHQDMYWIWALTAKYKS 335
>gi|322832154|ref|YP_004212181.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rahnella sp. Y9602]
gi|321167355|gb|ADW73054.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rahnella sp. Y9602]
Length = 282
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 141/248 (56%), Gaps = 30/248 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+++L++HYT +F + + T S+HY+I + L GK + Q+VP+NMRA
Sbjct: 48 IRFLVIHYTAEDFNNALNTLTDEHV----SAHYLIPAQPP--LEAGKPVAWQLVPENMRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG----VVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
WHAG WR NLN S+GI L N G ++G+KF YPF QI L L ++I
Sbjct: 102 WHAGASSWRGRTNLNDTSVGIELENKGYSNYLLGKKF-----YPFPPAQIDLLANLSQEI 156
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V++++I+P+ V+ H+DIAP K DPGPLFPW ++ + GIGAW PD V + P
Sbjct: 157 VARYQIEPRNVVAHSDIAPQRKDDPGPLFPWQEM-AERGIGAW--PDAARVNQYLAGRNP 213
Query: 208 ARPYPRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
+P +D+ L LLKAYGY N+T +R VI AF+ HF Q+ R +AD TE
Sbjct: 214 QQP----VDQAQLLVLLKAYGYSVEDNMTPRQQRRVIAAFQMHF--RQSDYRGHADAETE 267
Query: 264 DMFWAWAL 271
+ A L
Sbjct: 268 AIVRALLL 275
>gi|384257258|ref|YP_005401192.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rahnella aquatilis HX2]
gi|380753234|gb|AFE57625.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rahnella aquatilis HX2]
Length = 282
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 140/245 (57%), Gaps = 30/245 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+++L++HYT +F + + T S+HY+I + L GK + Q+VP+NMRA
Sbjct: 48 IRFLVIHYTAEDFNNALNTLTDEHV----SAHYLIPAQPP--LEAGKPVAWQLVPENMRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG----VVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
WHAG WR NLN S+GI L N G ++G+KF YPF QI L L ++I
Sbjct: 102 WHAGASSWRGRTNLNDTSVGIELENKGYSNYLLGKKF-----YPFPPAQIDLLANLSQEI 156
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V++++I+P+ V+ H+DIAP K DPGPLFPW ++ + GIGAW PD V + P
Sbjct: 157 VARYQIEPRNVVAHSDIAPQRKDDPGPLFPWQEM-AERGIGAW--PDAARVNQYLAGRNP 213
Query: 208 ARPYPRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
+P +D+ L LLKAYGY N+T +R VI AF+ HF Q+ R +AD TE
Sbjct: 214 QQP----VDQAQLLVLLKAYGYSVEDNMTPRQQRRVIAAFQMHF--RQSDYRGHADAETE 267
Query: 264 DMFWA 268
+ A
Sbjct: 268 AIVRA 272
>gi|383189379|ref|YP_005199507.1| negative regulator of beta-lactamase expression [Rahnella aquatilis
CIP 78.65 = ATCC 33071]
gi|371587637|gb|AEX51367.1| negative regulator of beta-lactamase expression [Rahnella aquatilis
CIP 78.65 = ATCC 33071]
Length = 282
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 138/245 (56%), Gaps = 30/245 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+++L++HYT +F + + T S+HY+I + L GK + Q+VP+NMRA
Sbjct: 48 IRFLVIHYTAEDFNNALNTLTDEHV----SAHYLIPAQPP--LEAGKPVAWQLVPENMRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG----VVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
WHAG WR NLN S+GI L N G ++G+KF YPF QI L L ++I
Sbjct: 102 WHAGASGWRGRTNLNDTSVGIELENKGYSHYLLGKKF-----YPFPPAQIDLLADLSQEI 156
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V++++I+P+ V+ H+DIAP K DPGPLFPW ++ + GIGAW PD V + P
Sbjct: 157 VARYQIEPRNVVAHSDIAPQRKDDPGPLFPWQEM-AERGIGAW--PDAARVNHYLAGRNP 213
Query: 208 ARPYPRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
+P + + L LLKAYGY N+T +R VI AF+ HF Q+ R AD TE
Sbjct: 214 QQP----VSQAQLLALLKAYGYSVEENMTPPQQRRVIAAFQMHF--RQSDYRGNADAQTE 267
Query: 264 DMFWA 268
+ A
Sbjct: 268 AIVRA 272
>gi|408482547|ref|ZP_11188766.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. R81]
Length = 276
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 139/273 (50%), Gaps = 29/273 (10%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY +D H +++L+LHYTV++ + + A T+ A S+HY+
Sbjct: 28 GYAVD--------TTHTSPNQNERIRFLVLHYTVFDDKNSLDALTNGTA----SAHYLAY 75
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
K+ V+Q+VP+ RAWHAG+ W NLN SIGI +VN G + E +
Sbjct: 76 STPHKHHNLPVVLQLVPEAKRAWHAGVSHWGNRANLNDTSIGIEIVNAGFI-EGPTGRLW 134
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
+P+ E Q+ + L D++ ++ I+PQ V+GH+DIAP K DPGPLFPW L ++GIGA
Sbjct: 135 FPYTEAQLALVKHLAADVIKRYAIEPQNVVGHSDIAPFRKSDPGPLFPWQALS-EHGIGA 193
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFK 244
W PD +T V K RP + +D I L YGY + + R VIRAF+
Sbjct: 194 W--PDAVT----VHKHLAGRPESQTVDVSIVQRALATYGYTIPQSGVLDDETRQVIRAFQ 247
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF P I E A ALV KY S
Sbjct: 248 MHF----RPAGISGIPDAETEAVALALVEKYLS 276
>gi|51596690|ref|YP_070881.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP
32953]
gi|153949509|ref|YP_001400661.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP
31758]
gi|186895746|ref|YP_001872858.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis PB1/+]
gi|51589972|emb|CAH21604.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia
pseudotuberculosis IP 32953]
gi|152961004|gb|ABS48465.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia
pseudotuberculosis IP 31758]
gi|186698772|gb|ACC89401.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis PB1/+]
Length = 283
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 136/254 (53%), Gaps = 29/254 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
V++L+LHYT + A + T S+HY+I K GGK I Q+VP+ RA
Sbjct: 48 VRFLVLHYTAVDDAESLRLLTQGEV----SAHYLIPTHPKK--AGGKAIALQLVPEAQRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ W+ NLN SIGI +VN G EK +YP++E+QI + L KDIV ++
Sbjct: 102 WHAGVSSWQGRNNLNDTSIGIEIVNLGFT-EKMLGRTWYPYNESQIELIEQLTKDIVQRY 160
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+ H+DIAP K DPGPLFPW +L + G+GAW PD+ TV K+ R
Sbjct: 161 NISPSDVVAHSDIAPLRKSDPGPLFPWKRL-AEKGVGAW--PDDATVA----KYIGGRDK 213
Query: 212 PRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYA--DITTED 264
+ + L AYGY + T R VI+AF+ HF P+ D+ TE
Sbjct: 214 KGAASVAVIQQALAAYGYKIPQNGQLDTETRQVIKAFQMHF----RPQDFSGVPDVETEA 269
Query: 265 MFWAWALVAKYGSM 278
+ A ALV KY ++
Sbjct: 270 I--ALALVEKYRTL 281
>gi|170024033|ref|YP_001720538.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis YPIII]
gi|169750567|gb|ACA68085.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis YPIII]
Length = 283
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 136/254 (53%), Gaps = 29/254 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
V++L+LHYT + A + T S+HY+I K GGK I Q+VP+ RA
Sbjct: 48 VRFLVLHYTAVDDAESLRLLTQGEV----SAHYLIPTHPKK--AGGKAIALQLVPEAQRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ W+ NLN SIGI +VN G EK +YP++E+QI + L KDIV ++
Sbjct: 102 WHAGVSSWQGRNNLNDTSIGIEIVNLGFT-EKMLGRTWYPYNESQIELIEQLTKDIVQRY 160
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+ H+DIAP K DPGPLFPW +L + G+GAW PD+ TV K+ R
Sbjct: 161 NISPSDVVAHSDIAPLRKSDPGPLFPWKRL-AEKGVGAW--PDDATVA----KYIGGRDK 213
Query: 212 PRKLDRGIFLELLKAYGYNV-----TITNKRSVIRAFKTHFSANQNPERIYA--DITTED 264
+ + L AYGY + T R VI+AF+ HF P+ D+ TE
Sbjct: 214 KGAASVAVIQQALAAYGYKIPQNGQLDTETRQVIKAFQMHF----RPQDFSGVPDVETEA 269
Query: 265 MFWAWALVAKYGSM 278
+ A ALV KY ++
Sbjct: 270 I--ALALVEKYRTL 281
>gi|22125770|ref|NP_669193.1| regulator [Yersinia pestis KIM10+]
gi|45441552|ref|NP_993091.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar Microtus
str. 91001]
gi|108807801|ref|YP_651717.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Antiqua]
gi|108812077|ref|YP_647844.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Nepal516]
gi|145599015|ref|YP_001163091.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Pestoides F]
gi|149366330|ref|ZP_01888364.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
CA88-4125]
gi|162421191|ref|YP_001607058.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Angola]
gi|165925563|ref|ZP_02221395.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938424|ref|ZP_02226981.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008406|ref|ZP_02229304.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166210800|ref|ZP_02236835.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167401757|ref|ZP_02307248.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167422608|ref|ZP_02314361.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167426782|ref|ZP_02318535.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167467659|ref|ZP_02332363.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis FV-1]
gi|218928843|ref|YP_002346718.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis CO92]
gi|229843830|ref|ZP_04463973.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229894679|ref|ZP_04509860.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Pestoides A]
gi|229897089|ref|ZP_04512245.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229902395|ref|ZP_04517514.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Nepal516]
gi|270490427|ref|ZP_06207501.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis KIM D27]
gi|294504100|ref|YP_003568162.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Z176003]
gi|384122116|ref|YP_005504736.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis D106004]
gi|384140398|ref|YP_005523100.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis A1122]
gi|384414614|ref|YP_005623976.1| putative N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420546498|ref|ZP_15044480.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-01]
gi|420582097|ref|ZP_15076436.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-08]
gi|420594737|ref|ZP_15087808.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-10]
gi|420603515|ref|ZP_15095657.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|420603677|ref|ZP_15095796.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|420609064|ref|ZP_15100689.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-13]
gi|420624772|ref|ZP_15114672.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|420626988|ref|ZP_15116658.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|420629979|ref|ZP_15119396.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|420632185|ref|ZP_15121343.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|420642833|ref|ZP_15130942.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-29]
gi|420659169|ref|ZP_15145688.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-36]
gi|420664502|ref|ZP_15150463.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-42]
gi|420672648|ref|ZP_15157882.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-46]
gi|420705761|ref|ZP_15186722.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-55]
gi|420713280|ref|ZP_15193471.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-56]
gi|420729875|ref|ZP_15208035.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-60]
gi|420738163|ref|ZP_15215547.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|420740380|ref|ZP_15217512.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|420767922|ref|ZP_15241280.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-72]
gi|420772895|ref|ZP_15245752.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-76]
gi|420781512|ref|ZP_15253403.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|420783879|ref|ZP_15255444.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|420789160|ref|ZP_15260128.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-90]
gi|420802892|ref|ZP_15272508.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|420805098|ref|ZP_15274484.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|420813854|ref|ZP_15282371.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|420816032|ref|ZP_15284330.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|420821248|ref|ZP_15289039.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-96]
gi|421763184|ref|ZP_16199979.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis INS]
gi|21958694|gb|AAM85444.1|AE013791_3 putative regulator [Yersinia pestis KIM10+]
gi|45436413|gb|AAS61968.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Microtus str. 91001]
gi|108775725|gb|ABG18244.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Nepal516]
gi|108779714|gb|ABG13772.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Antiqua]
gi|115347454|emb|CAL20358.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis CO92]
gi|145210711|gb|ABP40118.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Pestoides F]
gi|149290704|gb|EDM40779.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
CA88-4125]
gi|162354006|gb|ABX87954.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
Angola]
gi|165913539|gb|EDR32159.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. IP275]
gi|165922672|gb|EDR39823.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992788|gb|EDR45089.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207980|gb|EDR52460.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166958455|gb|EDR55476.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167048862|gb|EDR60270.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167054235|gb|EDR64058.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229680441|gb|EEO76538.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Nepal516]
gi|229689438|gb|EEO81501.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693426|gb|EEO83475.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229702434|gb|EEO90452.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Pestoides A]
gi|262361712|gb|ACY58433.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
D106004]
gi|270338931|gb|EFA49708.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis KIM D27]
gi|294354559|gb|ADE64900.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Z176003]
gi|320015118|gb|ADV98689.1| putative N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342855527|gb|AEL74080.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis A1122]
gi|391427672|gb|EIQ89737.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-01]
gi|391467397|gb|EIR25382.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-08]
gi|391476128|gb|EIR33273.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-10]
gi|391484033|gb|EIR40340.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|391484521|gb|EIR40768.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|391498218|gb|EIR53007.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-13]
gi|391507848|gb|EIR61642.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|391508156|gb|EIR61926.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|391514403|gb|EIR67508.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|391515253|gb|EIR68276.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|391523308|gb|EIR75629.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-29]
gi|391539124|gb|EIR89869.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-36]
gi|391541663|gb|EIR92188.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-42]
gi|391562417|gb|EIS10832.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-46]
gi|391587846|gb|EIS32963.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-56]
gi|391589688|gb|EIS34549.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-55]
gi|391601342|gb|EIS44775.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-60]
gi|391616578|gb|EIS58221.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|391622594|gb|EIS63494.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|391641250|gb|EIS79694.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-72]
gi|391651029|gb|EIS88255.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-76]
gi|391660734|gb|EIS96855.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|391664329|gb|EIT00074.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-90]
gi|391668995|gb|EIT04173.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|391681921|gb|EIT15840.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|391688250|gb|EIT21481.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|391695712|gb|EIT28259.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|391699118|gb|EIT31340.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-96]
gi|391702401|gb|EIT34291.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|411176085|gb|EKS46105.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis INS]
Length = 283
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 135/254 (53%), Gaps = 29/254 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
V++L+LHYT A + T S+HY+I K GGK I Q+VP+ RA
Sbjct: 48 VRFLVLHYTAVGDAESLRLLTQGEV----SAHYLIPTHPKK--AGGKAIALQLVPEAQRA 101
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ W+ NLN SIGI +VN G EK +YP++E+QI + L KDIV ++
Sbjct: 102 WHAGVSSWQGRNNLNDTSIGIEIVNLGFT-EKMLGRTWYPYNESQIELIEQLTKDIVQRY 160
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+ H+DIAP K DPGPLFPW +L + G+GAW PD+ TV K+ R
Sbjct: 161 NISPSDVVAHSDIAPLRKSDPGPLFPWKRL-AEKGVGAW--PDDATVA----KYIGGRDK 213
Query: 212 PRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYA--DITTED 264
+ + L AYGY + T R VI+AF+ HF P+ D+ TE
Sbjct: 214 KGAASVAVIQQALAAYGYKIPQNGQLDTETRQVIKAFQMHF----RPQDFSGVPDVETEA 269
Query: 265 MFWAWALVAKYGSM 278
+ A ALV KY ++
Sbjct: 270 I--ALALVEKYRTL 281
>gi|238893928|ref|YP_002918662.1| putative N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|238546244|dbj|BAH62595.1| probable N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 276
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G VG K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTVGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|425077446|ref|ZP_18480549.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|425088079|ref|ZP_18491172.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|405593155|gb|EKB66607.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|405602211|gb|EKB75353.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
Length = 276
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLNR----RP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|402781586|ref|YP_006637132.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|402542462|gb|AFQ66611.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 295
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 63 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 118
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G VG K ++ PF QI L L +DI+++
Sbjct: 119 AGVSYWRGSTRINDTSIGIELENRGWQKTVGVK----SFTPFHPEQIAALIPLARDIIAR 174
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 175 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 227
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 228 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 283
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 284 I--AEALLEKYGQ 294
>gi|432873912|ref|ZP_20093180.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE147]
gi|431404507|gb|ELG87758.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE147]
Length = 276
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 129/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDNSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLACYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|385788416|ref|YP_005819525.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Erwinia sp. Ejp617]
gi|310767688|gb|ADP12638.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Erwinia sp. Ejp617]
Length = 289
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 134/264 (50%), Gaps = 21/264 (7%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P ++ N H + V++L+LHYT + A + T S+HY++ +
Sbjct: 27 PGYQLNSEHPSASQNERVRFLVLHYTAADDAESLRLLTQGGV----SAHYLVPSAADPLM 82
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
V Q+VP++ RAWHAG+ W R NLN +IGI +V+ G + + ++YP+D Q
Sbjct: 83 KQRTVYQLVPEDKRAWHAGVSNWNRRSNLNDSAIGIEIVHPGFI-DNSSGRHWYPWDAQQ 141
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
+ + +L +D++ ++ I P V+ H+DIAPG K DPGPLFPW +L + GIGAW PD
Sbjct: 142 VRLVAILAQDVIQRYAITPDNVVAHSDIAPGRKFDPGPLFPWQQL-AEQGIGAW--PDSS 198
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
TV+ R Y R I + L +YGY + T R I AF+ HF
Sbjct: 199 TVQ---RYLAGRSHYAAGSVRKIQTD-LASYGYTIPQTGINDEKTRKAIAAFQMHF---- 250
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P TE A ALVAKY
Sbjct: 251 RPTNFSGVADTETEAIAAALVAKY 274
>gi|329998477|ref|ZP_08303114.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. MS 92-3]
gi|378977936|ref|YP_005226077.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419971949|ref|ZP_14487379.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419978755|ref|ZP_14494050.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419985528|ref|ZP_14500668.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419992743|ref|ZP_14507695.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419995060|ref|ZP_14509868.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420003531|ref|ZP_14518176.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420009181|ref|ZP_14523666.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420016554|ref|ZP_14530844.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420021869|ref|ZP_14536044.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420025154|ref|ZP_14539164.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420032264|ref|ZP_14546080.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420039055|ref|ZP_14552695.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420043685|ref|ZP_14557171.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420050067|ref|ZP_14563370.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420056237|ref|ZP_14569396.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420061205|ref|ZP_14574196.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420067960|ref|ZP_14580747.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420072687|ref|ZP_14585322.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420077625|ref|ZP_14590089.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420082107|ref|ZP_14594408.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421909303|ref|ZP_16339123.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421915914|ref|ZP_16345506.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|428150854|ref|ZP_18998610.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428939811|ref|ZP_19012911.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
VA360]
gi|328538667|gb|EGF64763.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. MS 92-3]
gi|364517347|gb|AEW60475.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397351198|gb|EJJ44283.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397351342|gb|EJJ44426.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397352887|gb|EJJ45965.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397360156|gb|EJJ52838.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397368833|gb|EJJ61438.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397369351|gb|EJJ61952.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397374723|gb|EJJ67043.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397381961|gb|EJJ74126.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397385941|gb|EJJ78028.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397397711|gb|EJJ89383.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397398031|gb|EJJ89697.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397403633|gb|EJJ95190.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397411994|gb|EJK03238.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397413491|gb|EJK04704.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397420874|gb|EJK11921.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397427281|gb|EJK18062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397431265|gb|EJK21942.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397438754|gb|EJK29234.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397445814|gb|EJK36047.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452469|gb|EJK42538.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|410116860|emb|CCM81748.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410121826|emb|CCM88131.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426303339|gb|EKV65513.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
VA360]
gi|427539123|emb|CCM94748.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 276
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY VT K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTSEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|424829879|ref|ZP_18254607.1| N-acetylmuramoyl-L-alanine amidase amiD [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|414707304|emb|CCN29008.1| N-acetylmuramoyl-L-alanine amidase amiD [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
Length = 276
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKNDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|238783408|ref|ZP_04627431.1| N-acetylmuramoyl-L-alanine amidase [Yersinia bercovieri ATCC 43970]
gi|238715653|gb|EEQ07642.1| N-acetylmuramoyl-L-alanine amidase [Yersinia bercovieri ATCC 43970]
Length = 276
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 21/265 (7%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
+++ + NH V++L+LHYT + A + T S+HY++
Sbjct: 28 DYKIDTNHPSVAQNDRVRFLVLHYTATDDAESLRLLTQGNV----SAHYLVKTHPDTVEG 83
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
V+Q+VP+ RAWHAG+ W+ NLN SIGI +VN G EK +YP++E+QI
Sbjct: 84 KPVVLQLVPEEQRAWHAGVSDWQGRNNLNDSSIGIEIVNKGFT-EKMLGRTWYPYNESQI 142
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ L KDIV ++ I P V+ H+DIAP K DPGPLFPW +L + GIGAW PDE T
Sbjct: 143 KLIERLTKDIVERYNIDPTDVIAHSDIAPLRKSDPGPLFPWKRL-AEQGIGAW--PDEAT 199
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQN 252
V K+ R + L YGY + + R VI AF+ HF A Q+
Sbjct: 200 VT----KYIDGRDIHDTASIATIQQTLARYGYKIPQSGILDDETRQVITAFQMHFRA-QD 254
Query: 253 PERIYADITTEDMFWAWALVAKYGS 277
I D+ TE + A ALV KY S
Sbjct: 255 FSGI-PDVETEAI--ALALVEKYRS 276
>gi|262041035|ref|ZP_06014254.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041593|gb|EEW42645.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 276
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|386034084|ref|YP_005953997.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae KCTC
2242]
gi|449044526|ref|ZP_21730134.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
hvKP1]
gi|339761212|gb|AEJ97432.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae KCTC
2242]
gi|448878110|gb|EMB13053.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
hvKP1]
Length = 276
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|30062351|ref|NP_836522.1| regulator [Shigella flexneri 2a str. 2457T]
gi|110804867|ref|YP_688387.1| regulator [Shigella flexneri 5 str. 8401]
gi|384542407|ref|YP_005726469.1| putative regulator [Shigella flexneri 2002017]
gi|415854701|ref|ZP_11530287.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 2a str.
2457T]
gi|417700951|ref|ZP_12350084.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-218]
gi|417706492|ref|ZP_12355548.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri VA-6]
gi|417711601|ref|ZP_12360600.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-272]
gi|417716335|ref|ZP_12365264.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-227]
gi|417721933|ref|ZP_12370774.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-304]
gi|417727273|ref|ZP_12376014.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-671]
gi|417732383|ref|ZP_12381052.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 2747-71]
gi|417737732|ref|ZP_12386333.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 4343-70]
gi|417742368|ref|ZP_12390918.1| amidase and lipoprotein [Shigella flexneri 2930-71]
gi|417826941|ref|ZP_12473514.1| amidase and lipoprotein [Shigella flexneri J1713]
gi|418254236|ref|ZP_12879133.1| amidase and lipoprotein [Shigella flexneri 6603-63]
gi|420319381|ref|ZP_14821234.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 2850-71]
gi|420330057|ref|ZP_14831754.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-1770]
gi|420340491|ref|ZP_14842015.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-404]
gi|420370918|ref|ZP_14871402.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 1235-66]
gi|424837329|ref|ZP_18261966.1| putative regulator [Shigella flexneri 5a str. M90T]
gi|30040596|gb|AAP16328.1| putative regulator [Shigella flexneri 2a str. 2457T]
gi|110614415|gb|ABF03082.1| putative regulator [Shigella flexneri 5 str. 8401]
gi|281600192|gb|ADA73176.1| putative regulator [Shigella flexneri 2002017]
gi|313650224|gb|EFS14636.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 2a str.
2457T]
gi|332759779|gb|EGJ90082.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 4343-70]
gi|332760494|gb|EGJ90783.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri 2747-71]
gi|332763084|gb|EGJ93329.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-671]
gi|332768039|gb|EGJ98225.1| amidase and lipoprotein [Shigella flexneri 2930-71]
gi|333006670|gb|EGK26169.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri VA-6]
gi|333006986|gb|EGK26481.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-218]
gi|333008823|gb|EGK28283.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-272]
gi|333020132|gb|EGK39402.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-227]
gi|333021017|gb|EGK40275.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella flexneri K-304]
gi|335576709|gb|EGM62954.1| amidase and lipoprotein [Shigella flexneri J1713]
gi|383466381|gb|EID61402.1| putative regulator [Shigella flexneri 5a str. M90T]
gi|391253569|gb|EIQ12742.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 2850-71]
gi|391258103|gb|EIQ17209.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-1770]
gi|391273048|gb|EIQ31877.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-404]
gi|391319770|gb|EIQ76734.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 1235-66]
gi|397900593|gb|EJL16952.1| amidase and lipoprotein [Shigella flexneri 6603-63]
Length = 276
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY+I +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLIPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|422332311|ref|ZP_16413325.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli
4_1_47FAA]
gi|373246724|gb|EHP66175.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli
4_1_47FAA]
Length = 260
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 28 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 83
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 84 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEQAQIQALIPLAKDIIARYH 141
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 142 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 196
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 197 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 250
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 251 EALLEKYGQ 259
>gi|152969457|ref|YP_001334566.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139271|ref|ZP_09345740.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella sp. 4_1_44FAA]
gi|425090774|ref|ZP_18493859.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|150954306|gb|ABR76336.1| probable N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|363654436|gb|EHL93339.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella sp. 4_1_44FAA]
gi|405613752|gb|EKB86481.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
Length = 295
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 63 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 118
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 119 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 174
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 175 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 227
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 228 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 283
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 284 I--AEALLEKYGQ 294
>gi|83716723|ref|YP_439074.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia thailandensis
E264]
gi|83650548|gb|ABC34612.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis E264]
Length = 383
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 128/235 (54%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + T S+HY++ + EGK +V +
Sbjct: 111 DSR----VRTLVLHYTAQTLARSVALLTD--PMRPVSAHYLVPDAADEGKRF---RVFAL 161
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP++ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +
Sbjct: 162 VPESNRAWHAGVSYWQGERLLNASSIGVEIVNSGFPDADEDAPLMRRRWSPFPDAQMAVV 221
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DIV++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + VE
Sbjct: 222 GRLAADIVARHAIPPQKVVGHSDIAPGRKLDPGPLFPWRTLYEQYGVGAW--PDAIAVE- 278
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYN-----VTITNKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ V T +VI AF+ HF
Sbjct: 279 ---YYRAYRPF-----RGDIAELQAKLLAYGYDTPQTGVLDTRTTNVIAAFQMHF 325
>gi|24112238|ref|NP_706748.1| regulator [Shigella flexneri 2a str. 301]
gi|24051086|gb|AAN42455.1| putative regulator [Shigella flexneri 2a str. 301]
Length = 276
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY+I +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLIPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLDKYGQ 275
>gi|424934257|ref|ZP_18352629.1| Putative N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|407808444|gb|EKF79695.1| Putative N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
Length = 303
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 71 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 126
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 127 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 182
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 183 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 235
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 236 ASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 291
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 292 I--AEALLEKYGQ 302
>gi|167577496|ref|ZP_02370370.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis TXDOH]
Length = 341
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 128/235 (54%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + T S+HY++ + EGK +V +
Sbjct: 69 DSR----VRTLVLHYTAQTLARSVALLTD--PMRPVSAHYLVPDAADEGKRF---RVFAL 119
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP++ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +
Sbjct: 120 VPESNRAWHAGVSYWQGERLLNASSIGVEIVNSGFPDADEDAPLMRRRWSPFPDAQMAVV 179
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DIV++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + VE
Sbjct: 180 GRLAADIVARHAIPPQKVVGHSDIAPGRKLDPGPLFPWRTLYEQYGVGAW--PDAIAVE- 236
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYN-----VTITNKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ V T +VI AF+ HF
Sbjct: 237 ---YYRAYRPF-----RGDIAELQAKLLAYGYDTPQTGVLDTRTTNVIAAFQMHF 283
>gi|432542254|ref|ZP_19779110.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE236]
gi|432547724|ref|ZP_19784511.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE237]
gi|432621008|ref|ZP_19857049.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE76]
gi|432717911|ref|ZP_19952906.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE9]
gi|432792088|ref|ZP_20026178.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE78]
gi|432798051|ref|ZP_20032076.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE79]
gi|432814505|ref|ZP_20048295.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE115]
gi|431076508|gb|ELD84003.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE236]
gi|431083660|gb|ELD89832.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE237]
gi|431161474|gb|ELE61945.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE76]
gi|431265590|gb|ELF57154.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE9]
gi|431341670|gb|ELG28676.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE78]
gi|431345073|gb|ELG32005.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE79]
gi|431366728|gb|ELG53225.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE115]
Length = 276
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|417137572|ref|ZP_11981362.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 97.0259]
gi|417307321|ref|ZP_12094193.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PCN033]
gi|338771192|gb|EGP25940.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PCN033]
gi|386159136|gb|EIH15469.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 97.0259]
Length = 276
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPEDVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQQVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|288936329|ref|YP_003440388.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Klebsiella variicola At-22]
gi|288891038|gb|ADC59356.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Klebsiella variicola At-22]
Length = 276
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIEALIPLARDIITR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D + L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASDPVDPEVVLDLLARYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|293409245|ref|ZP_06652821.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B354]
gi|432390901|ref|ZP_19633759.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE21]
gi|432601404|ref|ZP_19837653.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE66]
gi|432769718|ref|ZP_20004071.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE50]
gi|432960435|ref|ZP_20150566.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE202]
gi|433062114|ref|ZP_20249071.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE125]
gi|291469713|gb|EFF12197.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B354]
gi|430921519|gb|ELC42343.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE21]
gi|431143237|gb|ELE44975.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE66]
gi|431317800|gb|ELG05576.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE50]
gi|431478122|gb|ELH57881.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE202]
gi|431587030|gb|ELI58412.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE125]
Length = 276
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|167615644|ref|ZP_02384279.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis Bt4]
gi|257142183|ref|ZP_05590445.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia thailandensis E264]
Length = 341
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 128/235 (54%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + T S+HY++ + EGK +V +
Sbjct: 69 DSR----VRTLVLHYTAQTLARSVALLTDP--MRPVSAHYLVPDAADEGKRF---RVFAL 119
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP++ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +
Sbjct: 120 VPESNRAWHAGVSYWQGERLLNASSIGVEIVNSGFPDADEDAPLMRRRWSPFPDAQMAVV 179
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DIV++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + VE
Sbjct: 180 GRLAADIVARHAIPPQKVVGHSDIAPGRKLDPGPLFPWRTLYEQYGVGAW--PDAIAVE- 236
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYN-----VTITNKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ V T +VI AF+ HF
Sbjct: 237 ---YYRAYRPF-----RGDIAELQAKLLAYGYDTPQTGVLDTRTTNVIAAFQMHF 283
>gi|387606421|ref|YP_006095277.1| putative N-acetylmuramoyl-L-alanine amidase [Escherichia coli 042]
gi|284920721|emb|CBG33784.1| putative N-acetylmuramoyl-L-alanine amidase [Escherichia coli 042]
Length = 276
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEEELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|218699243|ref|YP_002406872.1| putative cell wall amidase and lipoprotein [Escherichia coli IAI39]
gi|386623270|ref|YP_006142998.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent, OM
lipoprotein [Escherichia coli O7:K1 str. CE10]
gi|218369229|emb|CAR16985.1| putative cell wall amidase and lipoprotein [Escherichia coli IAI39]
gi|349737008|gb|AEQ11714.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent, OM
lipoprotein [Escherichia coli O7:K1 str. CE10]
Length = 276
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|218704296|ref|YP_002411815.1| putative cell wall amidase and lipoprotein [Escherichia coli
UMN026]
gi|293404173|ref|ZP_06648167.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli FVEC1412]
gi|298379956|ref|ZP_06989561.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli FVEC1302]
gi|300901235|ref|ZP_07119336.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 198-1]
gi|301020596|ref|ZP_07184673.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 69-1]
gi|331662280|ref|ZP_08363203.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA143]
gi|417585808|ref|ZP_12236581.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_C165-02]
gi|419917947|ref|ZP_14436166.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KD2]
gi|419936194|ref|ZP_14453214.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 576-1]
gi|432352832|ref|ZP_19596116.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE2]
gi|432401066|ref|ZP_19643820.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE26]
gi|432425124|ref|ZP_19667639.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE181]
gi|432459893|ref|ZP_19702050.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE204]
gi|432474982|ref|ZP_19716990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE208]
gi|432488516|ref|ZP_19730401.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE213]
gi|432521564|ref|ZP_19758720.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE228]
gi|432536931|ref|ZP_19773848.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE235]
gi|432630492|ref|ZP_19866436.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE80]
gi|432640092|ref|ZP_19875932.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE83]
gi|432665159|ref|ZP_19900745.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE116]
gi|432774065|ref|ZP_20008351.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE54]
gi|432838535|ref|ZP_20072024.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE140]
gi|432885286|ref|ZP_20099881.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE158]
gi|432911229|ref|ZP_20117710.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE190]
gi|433017846|ref|ZP_20206107.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE105]
gi|433052247|ref|ZP_20239473.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE122]
gi|433067126|ref|ZP_20253951.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE128]
gi|433157856|ref|ZP_20342721.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE177]
gi|433177411|ref|ZP_20361860.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE82]
gi|433202416|ref|ZP_20386213.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE95]
gi|218431393|emb|CAR12271.1| putative cell wall amidase and lipoprotein [Escherichia coli
UMN026]
gi|291428759|gb|EFF01784.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli FVEC1412]
gi|298279654|gb|EFI21162.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli FVEC1302]
gi|300355309|gb|EFJ71179.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 198-1]
gi|300398614|gb|EFJ82152.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 69-1]
gi|331060702|gb|EGI32666.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA143]
gi|345338964|gb|EGW71390.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_C165-02]
gi|388392748|gb|EIL54157.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KD2]
gi|388401663|gb|EIL62291.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 576-1]
gi|430877760|gb|ELC01194.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE2]
gi|430927664|gb|ELC48227.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE26]
gi|430958358|gb|ELC76952.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE181]
gi|430991176|gb|ELD07592.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE204]
gi|431008490|gb|ELD23291.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE208]
gi|431023084|gb|ELD36341.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE213]
gi|431044628|gb|ELD54900.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE228]
gi|431072508|gb|ELD80259.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE235]
gi|431173527|gb|ELE73603.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE80]
gi|431184608|gb|ELE84365.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE83]
gi|431203564|gb|ELF02221.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE116]
gi|431320063|gb|ELG07715.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE54]
gi|431391001|gb|ELG74649.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE140]
gi|431419269|gb|ELH01627.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE158]
gi|431443945|gb|ELH24970.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE190]
gi|431536218|gb|ELI12549.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE105]
gi|431575023|gb|ELI47780.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE122]
gi|431589832|gb|ELI61038.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE128]
gi|431681232|gb|ELJ47038.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE177]
gi|431709116|gb|ELJ73612.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE82]
gi|431725056|gb|ELJ88967.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE95]
Length = 276
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEEELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|206577713|ref|YP_002239481.1| N-acetylmuramoyl-L-alanine amidase amiD [Klebsiella pneumoniae 342]
gi|290510615|ref|ZP_06549985.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. 1_1_55]
gi|206566771|gb|ACI08547.1| N-acetylmuramoyl-L-alanine amidase amiD [Klebsiella pneumoniae 342]
gi|289777331|gb|EFD85329.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. 1_1_55]
Length = 276
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIITR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLN----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D + L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 209 ASDPVDPEVVLDLLARYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|432849326|ref|ZP_20080548.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE144]
gi|431401326|gb|ELG84670.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE144]
Length = 276
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTTSLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|422970770|ref|ZP_16974282.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA124]
gi|371599800|gb|EHN88580.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA124]
Length = 276
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLAHYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|417595872|ref|ZP_12246531.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 3030-1]
gi|417607091|ref|ZP_12257610.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_DG131-3]
gi|345358618|gb|EGW90801.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 3030-1]
gi|345363682|gb|EGW95823.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_DG131-3]
Length = 276
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN +SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDISIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|415812733|ref|ZP_11504828.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli LT-68]
gi|323172163|gb|EFZ57801.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli LT-68]
Length = 276
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY+I +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLIPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|74311412|ref|YP_309831.1| regulator [Shigella sonnei Ss046]
gi|383177504|ref|YP_005455509.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella sonnei 53G]
gi|414575126|ref|ZP_11432332.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella sonnei 3233-85]
gi|415850309|ref|ZP_11527229.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella sonnei 53G]
gi|418263275|ref|ZP_12884340.1| amidase and lipoprotein [Shigella sonnei str. Moseley]
gi|420357615|ref|ZP_14858621.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella sonnei 3226-85]
gi|420362659|ref|ZP_14863574.1| amidase and lipoprotein [Shigella sonnei 4822-66]
gi|73854889|gb|AAZ87596.1| putative regulator [Shigella sonnei Ss046]
gi|323165802|gb|EFZ51588.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella sonnei 53G]
gi|391287203|gb|EIQ45734.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella sonnei 3226-85]
gi|391288075|gb|EIQ46584.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella sonnei 3233-85]
gi|391295952|gb|EIQ54074.1| amidase and lipoprotein [Shigella sonnei 4822-66]
gi|397902746|gb|EJL19058.1| amidase and lipoprotein [Shigella sonnei str. Moseley]
Length = 276
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPTQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|110590883|pdb|2BH7|A Chain A, Crystal Structure Of A Semet Derivative Of Amid At 2.2
Angstroms
Length = 261
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 29 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 84
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 85 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 142
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 143 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 197
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 198 --VDTASLLELLARYGYDVKPDXTPREQRRVIXAFQXHF----RPTLYNGEADAETQAIA 251
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 252 EALLEKYGQ 260
>gi|240104288|pdb|3D2Y|A Chain A, Complex Of The N-Acetylmuramyl-L-Alanine Amidase Amid From
E.Coli With The Substrate Anhydro-N-Acetylmuramic
Acid-L-Ala-D-Gamma-Glu-L-Lys
gi|240104290|pdb|3D2Z|A Chain A, Complex Of The N-Acetylmuramyl-L-Alanine Amidase Amid From
E.Coli With The Product L-Ala-D-Gamma-Glu-L-Lys
gi|283806762|pdb|2WKX|A Chain A, Crystal Structure Of The Native E. Coli Zinc Amidase Amid
Length = 261
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 29 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 84
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 85 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 142
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 143 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 197
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 198 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 251
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 252 EALLEKYGQ 260
>gi|415803222|ref|ZP_11500370.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli E128010]
gi|323159689|gb|EFZ45668.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli E128010]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|422833072|ref|ZP_16881139.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E101]
gi|371607822|gb|EHN96385.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E101]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T+ + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTNKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|432530202|ref|ZP_19767242.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE233]
gi|431056576|gb|ELD66077.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE233]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGSAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|416896447|ref|ZP_11926294.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_7v]
gi|417118655|ref|ZP_11969173.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 1.2741]
gi|422800231|ref|ZP_16848729.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli M863]
gi|323967303|gb|EGB62726.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli M863]
gi|327253655|gb|EGE65284.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_7v]
gi|386138189|gb|EIG79349.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 1.2741]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|260843118|ref|YP_003220896.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O103:H2 str. 12009]
gi|417177369|ref|ZP_12006850.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.2608]
gi|417180439|ref|ZP_12008147.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 93.0624]
gi|419299163|ref|ZP_13841176.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11C]
gi|419873091|ref|ZP_14395095.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O103:H2
str. CVM9450]
gi|257758265|dbj|BAI29762.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O103:H2 str. 12009]
gi|378155117|gb|EHX16177.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11C]
gi|386175918|gb|EIH53400.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.2608]
gi|386185794|gb|EIH68520.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 93.0624]
gi|388332392|gb|EIK99063.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O103:H2
str. CVM9450]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|331672407|ref|ZP_08373198.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA280]
gi|331070602|gb|EGI41966.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA280]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R I AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRAIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|432636140|ref|ZP_19872022.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE81]
gi|431173034|gb|ELE73115.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE81]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|238753704|ref|ZP_04615066.1| N-acetylmuramoyl-L-alanine amidase [Yersinia ruckeri ATCC 29473]
gi|238708256|gb|EEQ00612.1| N-acetylmuramoyl-L-alanine amidase [Yersinia ruckeri ATCC 29473]
Length = 277
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 142/254 (55%), Gaps = 31/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
V++L+ HYT + A + T + S+HY++ E + GGK V+Q+VP++ RA
Sbjct: 45 VRFLVFHYTAVDDAESLRLLTQEQV----SAHYLVMEHPRQ--EGGKPVVLQLVPEDKRA 98
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ +W+ +LN SIG+ +VN G E F + +YP++E+QI + LGKDIV ++
Sbjct: 99 WHAGVSEWQGRTSLNDTSIGVEIVNPGYTDE-FLARKWYPYNEDQIQLIERLGKDIVDRY 157
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV-RKFKPARP 210
I P V+ H+DIAP K DPGP FPW +LY + GIGAW PDE V+A++ + K
Sbjct: 158 HISPTDVVAHSDIAPLRKSDPGPYFPWKRLY-EAGIGAW--PDESRVQALIGERNKHDLA 214
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNKRS-----VIRAFKTHFSANQNPERIYA--DITTE 263
+ + L AYGY + ++ + VI AF+ HF P D+ TE
Sbjct: 215 SVESIQKA-----LVAYGYKIPLSGELDEETLKVITAFQMHF----RPADFSGIPDVETE 265
Query: 264 DMFWAWALVAKYGS 277
+ A ALV KY S
Sbjct: 266 AI--AQALVEKYRS 277
>gi|16128835|ref|NP_415388.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM
lipoprotein [Escherichia coli str. K-12 substr. MG1655]
gi|170080526|ref|YP_001729846.1| amidase [Escherichia coli str. K-12 substr. DH10B]
gi|238900126|ref|YP_002925922.1| putative amidase and lipoprotein [Escherichia coli BW2952]
gi|300957072|ref|ZP_07169317.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 175-1]
gi|301027619|ref|ZP_07190940.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 196-1]
gi|301646308|ref|ZP_07246198.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 146-1]
gi|331641388|ref|ZP_08342523.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H736]
gi|386279914|ref|ZP_10057587.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia sp. 4_1_40B]
gi|386596297|ref|YP_006092697.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli DH1]
gi|386704048|ref|YP_006167895.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli P12b]
gi|387620593|ref|YP_006128220.1| putative amidase and lipoprotein [Escherichia coli DH1]
gi|388476952|ref|YP_489140.1| amidase and lipoprotein [Escherichia coli str. K-12 substr. W3110]
gi|415771516|ref|ZP_11485375.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 3431]
gi|417261294|ref|ZP_12048782.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 2.3916]
gi|417274816|ref|ZP_12062156.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 2.4168]
gi|417277821|ref|ZP_12065142.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.2303]
gi|417289842|ref|ZP_12077125.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B41]
gi|417611962|ref|ZP_12262434.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_EH250]
gi|417617307|ref|ZP_12267737.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli G58-1]
gi|417633500|ref|ZP_12283719.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_S1191]
gi|417943860|ref|ZP_12587106.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli XH140A]
gi|417975191|ref|ZP_12615991.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli XH001]
gi|418301793|ref|ZP_12913587.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli UMNF18]
gi|418958798|ref|ZP_13510708.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli J53]
gi|419141386|ref|ZP_13686140.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6A]
gi|419146908|ref|ZP_13691599.1| amidase and lipoprotein [Escherichia coli DEC6B]
gi|419152785|ref|ZP_13697368.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6C]
gi|419158201|ref|ZP_13702718.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6D]
gi|419163134|ref|ZP_13707610.1| amidase and lipoprotein [Escherichia coli DEC6E]
gi|419174338|ref|ZP_13718190.1| amidase and lipoprotein [Escherichia coli DEC7B]
gi|419809519|ref|ZP_14334404.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O32:H37
str. P4]
gi|419940959|ref|ZP_14457673.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 75]
gi|422770101|ref|ZP_16823792.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E482]
gi|422793859|ref|ZP_16846552.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TA007]
gi|422819895|ref|ZP_16868105.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M919]
gi|423701715|ref|ZP_17676174.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H730]
gi|425114227|ref|ZP_18516048.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0566]
gi|425118936|ref|ZP_18520658.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0569]
gi|425271618|ref|ZP_18663113.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TW15901]
gi|425282271|ref|ZP_18673376.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TW00353]
gi|432562850|ref|ZP_19799470.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE51]
gi|432579564|ref|ZP_19815995.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE56]
gi|432626473|ref|ZP_19862454.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE77]
gi|432660094|ref|ZP_19895744.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE111]
gi|432684671|ref|ZP_19919983.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE156]
gi|432690792|ref|ZP_19926031.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE161]
gi|432703436|ref|ZP_19938555.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE171]
gi|432736368|ref|ZP_19971139.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE42]
gi|432954167|ref|ZP_20146286.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE197]
gi|433047004|ref|ZP_20234414.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE120]
gi|442593244|ref|ZP_21011198.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|450240893|ref|ZP_21899449.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli S17]
gi|9910982|sp|P75820.1|AMID_ECOLI RecName: Full=N-acetylmuramoyl-L-alanine amidase AmiD; Flags:
Precursor
gi|1787092|gb|AAC73954.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM
lipoprotein [Escherichia coli str. K-12 substr. MG1655]
gi|4062447|dbj|BAA35581.1| predicted amidase and lipoprotein [Escherichia coli str. K12
substr. W3110]
gi|169888361|gb|ACB02068.1| predicted amidase and lipoprotein [Escherichia coli str. K-12
substr. DH10B]
gi|238862147|gb|ACR64145.1| predicted amidase and lipoprotein [Escherichia coli BW2952]
gi|260449986|gb|ACX40408.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli DH1]
gi|299879255|gb|EFI87466.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 196-1]
gi|300316157|gb|EFJ65941.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 175-1]
gi|301075465|gb|EFK90271.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 146-1]
gi|315135516|dbj|BAJ42675.1| putative amidase and lipoprotein [Escherichia coli DH1]
gi|315619874|gb|EFV00393.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 3431]
gi|323942784|gb|EGB38949.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E482]
gi|323969569|gb|EGB64857.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TA007]
gi|331038186|gb|EGI10406.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H736]
gi|339413891|gb|AEJ55563.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli UMNF18]
gi|342364346|gb|EGU28447.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli XH140A]
gi|344195182|gb|EGV49252.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli XH001]
gi|345365311|gb|EGW97420.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_EH250]
gi|345380479|gb|EGX12378.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli G58-1]
gi|345390214|gb|EGX20013.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_S1191]
gi|359331559|dbj|BAL38006.1| predicted amidase and lipoprotein [Escherichia coli str. K-12
substr. MDS42]
gi|377999001|gb|EHV62088.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6A]
gi|378000427|gb|EHV63498.1| amidase and lipoprotein [Escherichia coli DEC6B]
gi|378002135|gb|EHV65188.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6C]
gi|378012290|gb|EHV75222.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC6D]
gi|378015836|gb|EHV78727.1| amidase and lipoprotein [Escherichia coli DEC6E]
gi|378036681|gb|EHV99220.1| amidase and lipoprotein [Escherichia coli DEC7B]
gi|383102216|gb|AFG39725.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli P12b]
gi|384378539|gb|EIE36420.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli J53]
gi|385157700|gb|EIF19691.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O32:H37
str. P4]
gi|385536510|gb|EIF83403.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M919]
gi|385711703|gb|EIG48660.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H730]
gi|386122983|gb|EIG71587.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia sp. 4_1_40B]
gi|386224421|gb|EII46756.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 2.3916]
gi|386233244|gb|EII65229.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 2.4168]
gi|386239508|gb|EII76437.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.2303]
gi|386255880|gb|EIJ05568.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B41]
gi|388401808|gb|EIL62421.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 75]
gi|408197077|gb|EKI22348.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TW15901]
gi|408205400|gb|EKI30288.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TW00353]
gi|408571939|gb|EKK47866.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0566]
gi|408572951|gb|EKK48832.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0569]
gi|431097411|gb|ELE02739.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE51]
gi|431107554|gb|ELE11719.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE56]
gi|431164421|gb|ELE64812.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE77]
gi|431201966|gb|ELF00662.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE111]
gi|431224178|gb|ELF21407.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE156]
gi|431229178|gb|ELF25830.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE161]
gi|431246001|gb|ELF40279.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE171]
gi|431285908|gb|ELF76743.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE42]
gi|431469465|gb|ELH49394.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE197]
gi|431571112|gb|ELI44019.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE120]
gi|441606997|emb|CCP96525.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|449324116|gb|EMD14054.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli S17]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|157156326|ref|YP_001462065.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E24377A]
gi|191166175|ref|ZP_03028009.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B7A]
gi|193064439|ref|ZP_03045520.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E22]
gi|193069401|ref|ZP_03050356.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E110019]
gi|194428206|ref|ZP_03060749.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B171]
gi|209918116|ref|YP_002292200.1| putative regulator [Escherichia coli SE11]
gi|218553453|ref|YP_002386366.1| putative cell wall amidase and lipoprotein [Escherichia coli IAI1]
gi|260854159|ref|YP_003228050.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O26:H11 str. 11368]
gi|300817032|ref|ZP_07097251.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 107-1]
gi|300824009|ref|ZP_07104131.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 119-7]
gi|300924477|ref|ZP_07140447.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 182-1]
gi|301325876|ref|ZP_07219309.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 78-1]
gi|307311745|ref|ZP_07591385.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli W]
gi|309795337|ref|ZP_07689755.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 145-7]
gi|331667241|ref|ZP_08368106.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA271]
gi|331676655|ref|ZP_08377351.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H591]
gi|332282239|ref|ZP_08394652.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella sp. D9]
gi|378713729|ref|YP_005278622.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli KO11FL]
gi|386608236|ref|YP_006123722.1| amidase [Escherichia coli W]
gi|386702317|ref|YP_006166154.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KO11FL]
gi|386708679|ref|YP_006172400.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli W]
gi|415785111|ref|ZP_11492748.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli EPECa14]
gi|415827628|ref|ZP_11514453.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli OK1357]
gi|415875772|ref|ZP_11542422.1| N-acetylmuramoyl-L-alanine amidase family protein [Escherichia coli
MS 79-10]
gi|416345155|ref|ZP_11678798.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli EC4100B]
gi|417130992|ref|ZP_11976263.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 5.0588]
gi|417161536|ref|ZP_11997772.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 99.0741]
gi|417209476|ref|ZP_12020760.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli JB1-95]
gi|417224014|ref|ZP_12027305.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 96.154]
gi|417241390|ref|ZP_12037336.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 9.0111]
gi|417254755|ref|ZP_12046506.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 4.0967]
gi|417267914|ref|ZP_12055275.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.3884]
gi|417295205|ref|ZP_12082461.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 900105 (10e)]
gi|417601205|ref|ZP_12251787.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_94C]
gi|417622230|ref|ZP_12272554.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_H.1.8]
gi|418042994|ref|ZP_12681175.1| putative amidase and lipoprotein [Escherichia coli W26]
gi|418944803|ref|ZP_13497798.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H43
str. T22]
gi|419202124|ref|ZP_13745346.1| amidase and lipoprotein [Escherichia coli DEC8B]
gi|419208018|ref|ZP_13751141.1| amidase and lipoprotein [Escherichia coli DEC8C]
gi|419214564|ref|ZP_13757586.1| amidase and lipoprotein [Escherichia coli DEC8D]
gi|419220164|ref|ZP_13763116.1| amidase and lipoprotein [Escherichia coli DEC8E]
gi|419225655|ref|ZP_13768538.1| amidase and lipoprotein [Escherichia coli DEC9A]
gi|419231669|ref|ZP_13774457.1| amidase and lipoprotein [Escherichia coli DEC9B]
gi|419236841|ref|ZP_13779584.1| amidase and lipoprotein [Escherichia coli DEC9C]
gi|419242371|ref|ZP_13785018.1| amidase and lipoprotein [Escherichia coli DEC9D]
gi|419247888|ref|ZP_13790495.1| amidase and lipoprotein [Escherichia coli DEC9E]
gi|419253627|ref|ZP_13796166.1| amidase and lipoprotein [Escherichia coli DEC10A]
gi|419259688|ref|ZP_13802132.1| amidase and lipoprotein [Escherichia coli DEC10B]
gi|419265623|ref|ZP_13808004.1| amidase and lipoprotein [Escherichia coli DEC10C]
gi|419271370|ref|ZP_13813694.1| amidase and lipoprotein [Escherichia coli DEC10D]
gi|419277139|ref|ZP_13819400.1| amidase and lipoprotein [Escherichia coli DEC10E]
gi|419282856|ref|ZP_13825067.1| amidase and lipoprotein [Escherichia coli DEC10F]
gi|419288403|ref|ZP_13830513.1| amidase and lipoprotein [Escherichia coli DEC11A]
gi|419293755|ref|ZP_13835810.1| amidase and lipoprotein [Escherichia coli DEC11B]
gi|419305456|ref|ZP_13847366.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11D]
gi|419310494|ref|ZP_13852365.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11E]
gi|419315782|ref|ZP_13857606.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC12A]
gi|419321728|ref|ZP_13863460.1| amidase and lipoprotein [Escherichia coli DEC12B]
gi|419327858|ref|ZP_13869486.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC12C]
gi|419333382|ref|ZP_13874937.1| amidase and lipoprotein [Escherichia coli DEC12D]
gi|419338700|ref|ZP_13880185.1| amidase and lipoprotein [Escherichia coli DEC12E]
gi|419344492|ref|ZP_13885874.1| amidase and lipoprotein [Escherichia coli DEC13A]
gi|419348931|ref|ZP_13890284.1| amidase and lipoprotein [Escherichia coli DEC13B]
gi|419353919|ref|ZP_13895201.1| amidase and lipoprotein [Escherichia coli DEC13C]
gi|419359314|ref|ZP_13900539.1| amidase and lipoprotein [Escherichia coli DEC13D]
gi|419364288|ref|ZP_13905466.1| amidase and lipoprotein [Escherichia coli DEC13E]
gi|419374627|ref|ZP_13915675.1| amidase and lipoprotein [Escherichia coli DEC14B]
gi|419379862|ref|ZP_13920834.1| amidase and lipoprotein [Escherichia coli DEC14C]
gi|419385266|ref|ZP_13926154.1| amidase and lipoprotein [Escherichia coli DEC14D]
gi|419390323|ref|ZP_13931157.1| amidase and lipoprotein [Escherichia coli DEC15A]
gi|419395480|ref|ZP_13936262.1| amidase and lipoprotein [Escherichia coli DEC15B]
gi|419400837|ref|ZP_13941568.1| amidase and lipoprotein [Escherichia coli DEC15C]
gi|419406048|ref|ZP_13946747.1| amidase and lipoprotein [Escherichia coli DEC15D]
gi|419411512|ref|ZP_13952180.1| amidase and lipoprotein [Escherichia coli DEC15E]
gi|419807595|ref|ZP_14332637.1| putative amidase and lipoprotein [Escherichia coli AI27]
gi|419873386|ref|ZP_14395377.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9534]
gi|419885488|ref|ZP_14406231.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9545]
gi|419899771|ref|ZP_14419263.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM9942]
gi|419910346|ref|ZP_14428869.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli O26:H11 str. CVM10026]
gi|419928700|ref|ZP_14446407.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 541-1]
gi|420105559|ref|ZP_14616029.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9455]
gi|420111574|ref|ZP_14621402.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9553]
gi|420117641|ref|ZP_14626996.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10021]
gi|420124090|ref|ZP_14632960.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10030]
gi|420129662|ref|ZP_14638188.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10224]
gi|420133095|ref|ZP_14641365.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM9952]
gi|420390337|ref|ZP_14889604.1| amidase and lipoprotein [Escherichia coli EPEC C342-62]
gi|422356115|ref|ZP_16436807.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 117-3]
gi|422764002|ref|ZP_16817755.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E1167]
gi|422959004|ref|ZP_16970935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H494]
gi|423708789|ref|ZP_17683167.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B799]
gi|424747208|ref|ZP_18175405.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CFSAN001629]
gi|424755900|ref|ZP_18183744.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CFSAN001630]
gi|425377777|ref|ZP_18762143.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli EC1865]
gi|425421461|ref|ZP_18802668.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 0.1288]
gi|432375979|ref|ZP_19618987.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE12]
gi|432480241|ref|ZP_19722203.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE210]
gi|432673863|ref|ZP_19909352.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE142]
gi|432749349|ref|ZP_19983961.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE29]
gi|432804994|ref|ZP_20038935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE91]
gi|432812969|ref|ZP_20046814.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE101]
gi|432830842|ref|ZP_20064425.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE135]
gi|432833949|ref|ZP_20067491.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE136]
gi|432933433|ref|ZP_20133101.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE184]
gi|433091196|ref|ZP_20277491.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE138]
gi|433192860|ref|ZP_20376872.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE90]
gi|450212623|ref|ZP_21894595.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O08]
gi|157078356|gb|ABV18064.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli E24377A]
gi|190903784|gb|EDV63499.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B7A]
gi|192928901|gb|EDV82514.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E22]
gi|192957354|gb|EDV87802.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli E110019]
gi|194413766|gb|EDX30045.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B171]
gi|209911375|dbj|BAG76449.1| putative regulator [Escherichia coli SE11]
gi|218360221|emb|CAQ97771.1| putative cell wall amidase and lipoprotein [Escherichia coli IAI1]
gi|257752808|dbj|BAI24310.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O26:H11 str. 11368]
gi|300419362|gb|EFK02673.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 182-1]
gi|300523520|gb|EFK44589.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 119-7]
gi|300530384|gb|EFK51446.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 107-1]
gi|300847390|gb|EFK75150.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 78-1]
gi|306908300|gb|EFN38799.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli W]
gi|308120987|gb|EFO58249.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 145-7]
gi|315060153|gb|ADT74480.1| predicted amidase and lipoprotein [Escherichia coli W]
gi|320199103|gb|EFW73700.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli EC4100B]
gi|323155759|gb|EFZ41928.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli EPECa14]
gi|323185169|gb|EFZ70534.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli OK1357]
gi|323379290|gb|ADX51558.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli KO11FL]
gi|324015934|gb|EGB85153.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 117-3]
gi|324116081|gb|EGC10005.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E1167]
gi|331065597|gb|EGI37490.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA271]
gi|331075344|gb|EGI46642.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H591]
gi|332104591|gb|EGJ07937.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella sp. D9]
gi|342929094|gb|EGU97816.1| N-acetylmuramoyl-L-alanine amidase family protein [Escherichia coli
MS 79-10]
gi|345353211|gb|EGW85447.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_94C]
gi|345385054|gb|EGX14904.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_H.1.8]
gi|371595660|gb|EHN84508.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H494]
gi|375319885|gb|EHS65935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H43
str. T22]
gi|378055768|gb|EHW18029.1| amidase and lipoprotein [Escherichia coli DEC8B]
gi|378061192|gb|EHW23378.1| amidase and lipoprotein [Escherichia coli DEC8C]
gi|378066817|gb|EHW28945.1| amidase and lipoprotein [Escherichia coli DEC8D]
gi|378071398|gb|EHW33468.1| amidase and lipoprotein [Escherichia coli DEC8E]
gi|378080024|gb|EHW41990.1| amidase and lipoprotein [Escherichia coli DEC9A]
gi|378081387|gb|EHW43342.1| amidase and lipoprotein [Escherichia coli DEC9B]
gi|378087704|gb|EHW49560.1| amidase and lipoprotein [Escherichia coli DEC9C]
gi|378093722|gb|EHW55526.1| amidase and lipoprotein [Escherichia coli DEC9D]
gi|378100053|gb|EHW61750.1| amidase and lipoprotein [Escherichia coli DEC9E]
gi|378105167|gb|EHW66814.1| amidase and lipoprotein [Escherichia coli DEC10A]
gi|378114468|gb|EHW76024.1| amidase and lipoprotein [Escherichia coli DEC10B]
gi|378117202|gb|EHW78718.1| amidase and lipoprotein [Escherichia coli DEC10C]
gi|378120901|gb|EHW82363.1| amidase and lipoprotein [Escherichia coli DEC10D]
gi|378132308|gb|EHW93660.1| amidase and lipoprotein [Escherichia coli DEC10E]
gi|378135281|gb|EHW96593.1| amidase and lipoprotein [Escherichia coli DEC11A]
gi|378138058|gb|EHW99319.1| amidase and lipoprotein [Escherichia coli DEC10F]
gi|378145254|gb|EHX06420.1| amidase and lipoprotein [Escherichia coli DEC11B]
gi|378151935|gb|EHX13037.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11D]
gi|378160209|gb|EHX21206.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC11E]
gi|378173163|gb|EHX34007.1| amidase and lipoprotein [Escherichia coli DEC12B]
gi|378173874|gb|EHX34707.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC12A]
gi|378175317|gb|EHX36135.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC12C]
gi|378188618|gb|EHX49214.1| amidase and lipoprotein [Escherichia coli DEC12D]
gi|378188920|gb|EHX49514.1| amidase and lipoprotein [Escherichia coli DEC13A]
gi|378193223|gb|EHX53764.1| amidase and lipoprotein [Escherichia coli DEC12E]
gi|378204593|gb|EHX65009.1| amidase and lipoprotein [Escherichia coli DEC13B]
gi|378206773|gb|EHX67175.1| amidase and lipoprotein [Escherichia coli DEC13D]
gi|378207891|gb|EHX68279.1| amidase and lipoprotein [Escherichia coli DEC13C]
gi|378217743|gb|EHX78019.1| amidase and lipoprotein [Escherichia coli DEC13E]
gi|378223995|gb|EHX84203.1| amidase and lipoprotein [Escherichia coli DEC14B]
gi|378232049|gb|EHX92152.1| amidase and lipoprotein [Escherichia coli DEC14C]
gi|378234715|gb|EHX94791.1| amidase and lipoprotein [Escherichia coli DEC14D]
gi|378242626|gb|EHY02578.1| amidase and lipoprotein [Escherichia coli DEC15A]
gi|378250092|gb|EHY10000.1| amidase and lipoprotein [Escherichia coli DEC15B]
gi|378251142|gb|EHY11043.1| amidase and lipoprotein [Escherichia coli DEC15C]
gi|378256889|gb|EHY16734.1| amidase and lipoprotein [Escherichia coli DEC15D]
gi|378260732|gb|EHY20532.1| amidase and lipoprotein [Escherichia coli DEC15E]
gi|383393844|gb|AFH18802.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KO11FL]
gi|383404371|gb|AFH10614.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli W]
gi|383474097|gb|EID66095.1| putative amidase and lipoprotein [Escherichia coli W26]
gi|384469404|gb|EIE53573.1| putative amidase and lipoprotein [Escherichia coli AI27]
gi|385707510|gb|EIG44541.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B799]
gi|386154100|gb|EIH05381.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 5.0588]
gi|386174072|gb|EIH46073.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 99.0741]
gi|386196101|gb|EIH90327.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli JB1-95]
gi|386199062|gb|EIH98053.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 96.154]
gi|386212071|gb|EII22520.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 9.0111]
gi|386215037|gb|EII31534.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 4.0967]
gi|386230272|gb|EII57627.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3.3884]
gi|386261568|gb|EIJ17033.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 900105 (10e)]
gi|388349815|gb|EIL15267.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9545]
gi|388352753|gb|EIL17841.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9534]
gi|388371694|gb|EIL35154.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli O26:H11 str. CVM10026]
gi|388379392|gb|EIL42061.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM9942]
gi|388405066|gb|EIL65503.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 541-1]
gi|391314200|gb|EIQ71756.1| amidase and lipoprotein [Escherichia coli EPEC C342-62]
gi|394381969|gb|EJE59622.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10224]
gi|394395844|gb|EJE72237.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9455]
gi|394398163|gb|EJE74363.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CVM9553]
gi|394401871|gb|EJE77640.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10021]
gi|394415731|gb|EJE89575.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM10030]
gi|394426747|gb|EJE99540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CVM9952]
gi|408308747|gb|EKJ25980.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli EC1865]
gi|408347125|gb|EKJ61359.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 0.1288]
gi|421946638|gb|EKU03754.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O26:H11
str. CFSAN001629]
gi|421949952|gb|EKU06857.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H11
str. CFSAN001630]
gi|430900607|gb|ELC22625.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE12]
gi|431009723|gb|ELD24337.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE210]
gi|431217237|gb|ELF14817.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE142]
gi|431298639|gb|ELF88263.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE29]
gi|431356175|gb|ELG42866.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE101]
gi|431356606|gb|ELG43296.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE91]
gi|431379683|gb|ELG64612.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE135]
gi|431386830|gb|ELG70783.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE136]
gi|431455075|gb|ELH35431.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE184]
gi|431613389|gb|ELI82586.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE138]
gi|431720083|gb|ELJ84118.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE90]
gi|449321732|gb|EMD11742.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O08]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|157160390|ref|YP_001457708.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli HS]
gi|187730786|ref|YP_001880936.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii CDC
3083-94]
gi|218694341|ref|YP_002402008.1| cell wall amidase and lipoprotein [Escherichia coli 55989]
gi|293414150|ref|ZP_06656799.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B185]
gi|300902401|ref|ZP_07120384.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 84-1]
gi|300935039|ref|ZP_07150071.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 21-1]
gi|301305360|ref|ZP_07211455.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 124-1]
gi|387611409|ref|YP_006114525.1| putative N-acetylmuramoyl-L-alanine amidase [Escherichia coli ETEC
H10407]
gi|404374192|ref|ZP_10979411.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia sp. 1_1_43]
gi|407468341|ref|YP_006785217.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2009EL-2071]
gi|407482927|ref|YP_006780076.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2011C-3493]
gi|410483479|ref|YP_006771025.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2009EL-2050]
gi|415860874|ref|ZP_11534589.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 85-1]
gi|416267774|ref|ZP_11641947.1| N-acetylmuramoyl-L-alanine amidase [Shigella dysenteriae CDC
74-1112]
gi|416304928|ref|ZP_11654083.1| N-acetylmuramoyl-L-alanine amidase [Shigella flexneri CDC 796-83]
gi|417120496|ref|ZP_11970054.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 97.0246]
gi|417144320|ref|ZP_11986126.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 1.2264]
gi|417229403|ref|ZP_12030989.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 5.0959]
gi|417627800|ref|ZP_12278047.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_MHI813]
gi|417638194|ref|ZP_12288360.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli TX1999]
gi|417681096|ref|ZP_12330474.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella boydii 3594-74]
gi|417804247|ref|ZP_12451278.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. LB226692]
gi|417864152|ref|ZP_12509199.1| hypothetical protein C22711_1086 [Escherichia coli O104:H4 str.
C227-11]
gi|419168854|ref|ZP_13713248.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC7A]
gi|419179834|ref|ZP_13723457.1| amidase and lipoprotein [Escherichia coli DEC7C]
gi|419185395|ref|ZP_13728917.1| amidase and lipoprotein [Escherichia coli DEC7D]
gi|419190589|ref|ZP_13734056.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC7E]
gi|419925725|ref|ZP_14443554.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 541-15]
gi|420324641|ref|ZP_14826421.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri CCH060]
gi|420335071|ref|ZP_14836687.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-315]
gi|420353428|ref|ZP_14854545.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii 4444-74]
gi|420380900|ref|ZP_14880355.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella dysenteriae
225-75]
gi|420384495|ref|ZP_14883879.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli EPECa12]
gi|421681595|ref|ZP_16121421.1| amidase and lipoprotein [Shigella flexneri 1485-80]
gi|422765441|ref|ZP_16819168.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E1520]
gi|422775314|ref|ZP_16828970.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H120]
gi|422830721|ref|ZP_16878875.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B093]
gi|422991602|ref|ZP_16982373.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. C227-11]
gi|422993544|ref|ZP_16984308.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. C236-11]
gi|422998755|ref|ZP_16989511.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 09-7901]
gi|423007216|ref|ZP_16997959.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 04-8351]
gi|423008862|ref|ZP_16999600.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-3677]
gi|423023050|ref|ZP_17013753.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4404]
gi|423028202|ref|ZP_17018895.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4522]
gi|423034036|ref|ZP_17024720.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4623]
gi|423036902|ref|ZP_17027576.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C1]
gi|423042021|ref|ZP_17032688.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C2]
gi|423048711|ref|ZP_17039368.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C3]
gi|423052293|ref|ZP_17041101.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C4]
gi|423059259|ref|ZP_17048055.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C5]
gi|425304401|ref|ZP_18694179.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli N1]
gi|427803980|ref|ZP_18971047.1| putative regulator [Escherichia coli chi7122]
gi|427808565|ref|ZP_18975630.1| putative regulator [Escherichia coli]
gi|429723093|ref|ZP_19257982.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9450]
gi|429775267|ref|ZP_19307265.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02030]
gi|429780456|ref|ZP_19312405.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02033-1]
gi|429784507|ref|ZP_19316416.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02092]
gi|429789844|ref|ZP_19321716.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02093]
gi|429796074|ref|ZP_19327897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02281]
gi|429801999|ref|ZP_19333774.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02318]
gi|429805631|ref|ZP_19337375.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02913]
gi|429811227|ref|ZP_19342926.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-03439]
gi|429816578|ref|ZP_19348234.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-04080]
gi|429821786|ref|ZP_19353398.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-03943]
gi|429907455|ref|ZP_19373423.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9990]
gi|429911656|ref|ZP_19377612.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9941]
gi|429917491|ref|ZP_19383431.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4984]
gi|429922529|ref|ZP_19388450.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-5604]
gi|429923382|ref|ZP_19389298.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4986]
gi|429932277|ref|ZP_19398171.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4987]
gi|429933879|ref|ZP_19399769.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4988]
gi|429939538|ref|ZP_19405412.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-5603]
gi|429947180|ref|ZP_19413035.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-6006]
gi|429949812|ref|ZP_19415660.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec12-0465]
gi|429958090|ref|ZP_19423919.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec12-0466]
gi|432368925|ref|ZP_19612026.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE10]
gi|432484561|ref|ZP_19726481.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE212]
gi|432669813|ref|ZP_19905353.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE119]
gi|432679291|ref|ZP_19914690.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE143]
gi|432764189|ref|ZP_19998637.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE48]
gi|432880602|ref|ZP_20097137.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE154]
gi|432946109|ref|ZP_20141802.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE196]
gi|433042375|ref|ZP_20229897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE117]
gi|433134043|ref|ZP_20319416.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE166]
gi|433172697|ref|ZP_20357250.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE232]
gi|443616941|ref|YP_007380797.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli APEC O78]
gi|157066070|gb|ABV05325.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli HS]
gi|187427778|gb|ACD07052.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii CDC
3083-94]
gi|218351073|emb|CAU96777.1| putative cell wall amidase and lipoprotein [Escherichia coli 55989]
gi|291434208|gb|EFF07181.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B185]
gi|300405548|gb|EFJ89086.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 84-1]
gi|300459702|gb|EFK23195.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 21-1]
gi|300839378|gb|EFK67138.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 124-1]
gi|309701145|emb|CBJ00443.1| putative N-acetylmuramoyl-L-alanine amidase [Escherichia coli ETEC
H10407]
gi|315257904|gb|EFU37872.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 85-1]
gi|320175307|gb|EFW50413.1| N-acetylmuramoyl-L-alanine amidase [Shigella dysenteriae CDC
74-1112]
gi|320183193|gb|EFW58051.1| N-acetylmuramoyl-L-alanine amidase [Shigella flexneri CDC 796-83]
gi|323937974|gb|EGB34236.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli E1520]
gi|323947109|gb|EGB43120.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H120]
gi|332097029|gb|EGJ02012.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella boydii 3594-74]
gi|340741111|gb|EGR75261.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. LB226692]
gi|341917441|gb|EGT67057.1| hypothetical protein C22711_1086 [Escherichia coli O104:H4 str.
C227-11]
gi|345378104|gb|EGX10035.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_MHI813]
gi|345395048|gb|EGX24801.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli TX1999]
gi|354856604|gb|EHF17062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 04-8351]
gi|354857851|gb|EHF18304.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. C227-11]
gi|354864619|gb|EHF25048.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. C236-11]
gi|354874932|gb|EHF35298.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 09-7901]
gi|354878892|gb|EHF39239.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4404]
gi|354882684|gb|EHF43006.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-3677]
gi|354884306|gb|EHF44619.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4522]
gi|354887363|gb|EHF47638.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4623]
gi|354900558|gb|EHF60692.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C1]
gi|354903703|gb|EHF63803.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C2]
gi|354906066|gb|EHF66148.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C3]
gi|354916983|gb|EHF76953.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C5]
gi|354921044|gb|EHF80969.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-4632 C4]
gi|371603827|gb|EHN92462.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli B093]
gi|378018072|gb|EHV80939.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC7A]
gi|378027019|gb|EHV89651.1| amidase and lipoprotein [Escherichia coli DEC7C]
gi|378032813|gb|EHV95394.1| amidase and lipoprotein [Escherichia coli DEC7D]
gi|378041826|gb|EHW04284.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC7E]
gi|386149151|gb|EIG95583.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 97.0246]
gi|386164203|gb|EIH25989.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 1.2264]
gi|386205893|gb|EII10399.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 5.0959]
gi|388385620|gb|EIL47295.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 541-15]
gi|391255729|gb|EIQ14870.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri CCH060]
gi|391266565|gb|EIQ25514.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri K-315]
gi|391278917|gb|EIQ37613.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii 4444-74]
gi|391300935|gb|EIQ58838.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella dysenteriae
225-75]
gi|391308853|gb|EIQ66540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli EPECa12]
gi|404292250|gb|EJZ49079.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia sp. 1_1_43]
gi|404341546|gb|EJZ67952.1| amidase and lipoprotein [Shigella flexneri 1485-80]
gi|406778641|gb|AFS58065.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2009EL-2050]
gi|407055224|gb|AFS75275.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2011C-3493]
gi|407064376|gb|AFS85423.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 2009EL-2071]
gi|408231075|gb|EKI54379.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli N1]
gi|412962162|emb|CCK46076.1| putative regulator [Escherichia coli chi7122]
gi|412968744|emb|CCJ43370.1| putative regulator [Escherichia coli]
gi|429350002|gb|EKY86737.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02030]
gi|429350714|gb|EKY87439.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02033-1]
gi|429351092|gb|EKY87813.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02092]
gi|429365370|gb|EKZ01983.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02093]
gi|429366321|gb|EKZ02924.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02281]
gi|429368884|gb|EKZ05467.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02318]
gi|429381291|gb|EKZ17778.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-02913]
gi|429382259|gb|EKZ18724.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-03439]
gi|429383694|gb|EKZ20153.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-03943]
gi|429395525|gb|EKZ31891.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 11-04080]
gi|429396739|gb|EKZ33087.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9450]
gi|429397617|gb|EKZ33963.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9990]
gi|429409345|gb|EKZ45575.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4984]
gi|429417805|gb|EKZ53952.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4987]
gi|429421474|gb|EKZ57595.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4988]
gi|429423214|gb|EKZ59322.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-4986]
gi|429427216|gb|EKZ63301.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-5603]
gi|429434098|gb|EKZ70127.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-5604]
gi|429438085|gb|EKZ74079.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec12-0465]
gi|429443441|gb|EKZ79393.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-6006]
gi|429449544|gb|EKZ85443.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec12-0466]
gi|429455420|gb|EKZ91276.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. Ec11-9941]
gi|430888137|gb|ELC10860.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE10]
gi|431017712|gb|ELD31167.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE212]
gi|431212343|gb|ELF10270.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE119]
gi|431224351|gb|ELF21578.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE143]
gi|431312768|gb|ELG00757.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE48]
gi|431412830|gb|ELG95629.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE154]
gi|431462101|gb|ELH42319.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE196]
gi|431559373|gb|ELI32933.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE117]
gi|431661329|gb|ELJ28143.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE166]
gi|431695688|gb|ELJ60990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE232]
gi|443421449|gb|AGC86353.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli APEC O78]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|422806113|ref|ZP_16854545.1| N-acetylmuramoyl-L-alanine amidase [Escherichia fergusonii B253]
gi|324112651|gb|EGC06627.1| N-acetylmuramoyl-L-alanine amidase [Escherichia fergusonii B253]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEPAQIQALIPLAKDIITRYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTAPLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|194433089|ref|ZP_03065371.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella dysenteriae 1012]
gi|416288820|ref|ZP_11649347.1| N-acetylmuramoyl-L-alanine amidase [Shigella boydii ATCC 9905]
gi|417672799|ref|ZP_12322258.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella dysenteriae
155-74]
gi|420347866|ref|ZP_14849260.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii 965-58]
gi|194418586|gb|EDX34673.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella dysenteriae 1012]
gi|320177796|gb|EFW52782.1| N-acetylmuramoyl-L-alanine amidase [Shigella boydii ATCC 9905]
gi|332091009|gb|EGI96099.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella dysenteriae
155-74]
gi|391270007|gb|EIQ28904.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella boydii 965-58]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|306812684|ref|ZP_07446877.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli NC101]
gi|432380490|ref|ZP_19623445.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE15]
gi|432386317|ref|ZP_19629213.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE16]
gi|432513105|ref|ZP_19750340.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE224]
gi|432610536|ref|ZP_19846707.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE72]
gi|432645294|ref|ZP_19881093.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE86]
gi|432655132|ref|ZP_19890844.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE93]
gi|432698217|ref|ZP_19933383.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE169]
gi|432744837|ref|ZP_19979536.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE43]
gi|432903450|ref|ZP_20112916.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE194]
gi|432942916|ref|ZP_20140070.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE183]
gi|432971022|ref|ZP_20159900.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE207]
gi|432984494|ref|ZP_20173231.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE215]
gi|433037905|ref|ZP_20225517.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE113]
gi|433081792|ref|ZP_20268266.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE133]
gi|433100376|ref|ZP_20286483.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE145]
gi|433143487|ref|ZP_20328653.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE168]
gi|433187651|ref|ZP_20371768.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE88]
gi|305853447|gb|EFM53886.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli NC101]
gi|430909238|gb|ELC30623.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE16]
gi|430910805|gb|ELC32105.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE15]
gi|431044144|gb|ELD54424.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE224]
gi|431150877|gb|ELE51919.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE72]
gi|431182525|gb|ELE82342.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE86]
gi|431194042|gb|ELE93312.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE93]
gi|431246357|gb|ELF40623.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE169]
gi|431294313|gb|ELF84493.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE43]
gi|431435894|gb|ELH17502.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE194]
gi|431452803|gb|ELH33214.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE183]
gi|431486159|gb|ELH65816.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE207]
gi|431505073|gb|ELH83696.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE215]
gi|431554075|gb|ELI27957.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE113]
gi|431605627|gb|ELI75016.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE133]
gi|431621833|gb|ELI90623.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE145]
gi|431665589|gb|ELJ32307.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE168]
gi|431708651|gb|ELJ73159.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE88]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|424466922|ref|ZP_17917101.1| putative regulator [Escherichia coli PA41]
gi|390775356|gb|EIO43423.1| putative regulator [Escherichia coli PA41]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|218548386|ref|YP_002382177.1| cell wall amidase and lipoprotein [Escherichia fergusonii ATCC
35469]
gi|218355927|emb|CAQ88542.1| putative cell wall amidase and lipoprotein [Escherichia fergusonii
ATCC 35469]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGMKYFAPFEPAQIQALIPLAKDIITRYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|425080712|ref|ZP_18483809.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|428933190|ref|ZP_19006749.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
JHCK1]
gi|405605847|gb|EKB78851.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|426305821|gb|EKV67935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella pneumoniae
JHCK1]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPRYQHKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L +DI+++
Sbjct: 100 AGVSYWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFHPEQIAALIPLARDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PDE V + + P
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDEQRVAFYLNGRAASEP 212
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTED 264
+D I L+LL YGY V T K+ VI AF+ HF P+R AD TE
Sbjct: 213 ----VDPEIVLDLLSRYGYQVTPEMTPAQKKRVIIAFQMHF----RPQRWDGVADAQTEA 264
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 265 I--AEALLEKYGQ 275
>gi|238798120|ref|ZP_04641607.1| N-acetylmuramoyl-L-alanine amidase [Yersinia mollaretii ATCC 43969]
gi|238717974|gb|EEQ09803.1| N-acetylmuramoyl-L-alanine amidase [Yersinia mollaretii ATCC 43969]
Length = 274
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 137/265 (51%), Gaps = 21/265 (7%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E++ + N+ V++L+LHYT + A + T S+HY++
Sbjct: 26 EYKIDTNNPSVAQNDRVRFLVLHYTATDDAESLRLLTQGNV----SAHYLVKTHPDTVEG 81
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
V+Q+VP+ RAWHAG+ W+ +LN SIGI +VN G E +YP++E+QI
Sbjct: 82 KPVVLQLVPEEQRAWHAGVSDWQGRNSLNDTSIGIEIVNKGFT-ETMLGRTWYPYNESQI 140
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ L KDIV ++ I P V+ H+DIAP K DPGPLFPW +L D GIGAW PD+ T
Sbjct: 141 KLIERLTKDIVERYNIAPTDVVAHSDIAPLRKSDPGPLFPWKRL-ADQGIGAW--PDDAT 197
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNK-RSVIRAFKTHFSANQN 252
V K+ R I + L YGY + T+ ++ R VI AF+ HF A
Sbjct: 198 VT----KYIDGREIHDTASVAIIQQALARYGYKIPQSGTLDDETRQVITAFQMHFRAQDF 253
Query: 253 PERIYADITTEDMFWAWALVAKYGS 277
D+ TE + A ALV KY S
Sbjct: 254 SG--TPDVETEAI--ALALVEKYRS 274
>gi|331651886|ref|ZP_08352905.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M718]
gi|331050164|gb|EGI22222.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M718]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISTWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|15800625|ref|NP_286639.1| regulator [Escherichia coli O157:H7 str. EDL933]
gi|15830207|ref|NP_308980.1| regulator [Escherichia coli O157:H7 str. Sakai]
gi|168750059|ref|ZP_02775081.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4113]
gi|168756669|ref|ZP_02781676.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4401]
gi|168763276|ref|ZP_02788283.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4501]
gi|168767385|ref|ZP_02792392.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4486]
gi|168776416|ref|ZP_02801423.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4196]
gi|168779427|ref|ZP_02804434.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4076]
gi|168787096|ref|ZP_02812103.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC869]
gi|168799843|ref|ZP_02824850.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC508]
gi|195936918|ref|ZP_03082300.1| putative regulator [Escherichia coli O157:H7 str. EC4024]
gi|208808776|ref|ZP_03251113.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4206]
gi|208815481|ref|ZP_03256660.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4045]
gi|208822541|ref|ZP_03262860.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4042]
gi|209396134|ref|YP_002269541.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4115]
gi|217325013|ref|ZP_03441097.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. TW14588]
gi|254792068|ref|YP_003076905.1| amidase and lipoprotein [Escherichia coli O157:H7 str. TW14359]
gi|261225522|ref|ZP_05939803.1| predicted amidase and lipoprotein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258509|ref|ZP_05951042.1| predicted amidase and lipoprotein [Escherichia coli O157:H7 str.
FRIK966]
gi|291281871|ref|YP_003498689.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. CB9615]
gi|387505980|ref|YP_006158236.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. RM12579]
gi|387881482|ref|YP_006311784.1| putative regulator [Escherichia coli Xuzhou21]
gi|416309472|ref|ZP_11655844.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
1044]
gi|416317351|ref|ZP_11660392.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
EC1212]
gi|416332110|ref|ZP_11670189.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
1125]
gi|416781977|ref|ZP_11877446.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. G5101]
gi|416793207|ref|ZP_11882368.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H-
str. 493-89]
gi|416804473|ref|ZP_11887228.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H-
str. H 2687]
gi|416825331|ref|ZP_11896519.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. USDA 5905]
gi|416836177|ref|ZP_11901792.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. LSU-61]
gi|419044141|ref|ZP_13591112.1| amidase and lipoprotein [Escherichia coli DEC3A]
gi|419049519|ref|ZP_13596435.1| amidase and lipoprotein [Escherichia coli DEC3B]
gi|419055601|ref|ZP_13602454.1| amidase and lipoprotein [Escherichia coli DEC3C]
gi|419061171|ref|ZP_13607950.1| amidase and lipoprotein [Escherichia coli DEC3D]
gi|419067447|ref|ZP_13613860.1| amidase and lipoprotein [Escherichia coli DEC3E]
gi|419074134|ref|ZP_13619702.1| amidase and lipoprotein [Escherichia coli DEC3F]
gi|419079283|ref|ZP_13624765.1| amidase and lipoprotein [Escherichia coli DEC4A]
gi|419084919|ref|ZP_13630328.1| amidase and lipoprotein [Escherichia coli DEC4B]
gi|419091030|ref|ZP_13636347.1| amidase and lipoprotein [Escherichia coli DEC4C]
gi|419096939|ref|ZP_13642181.1| amidase and lipoprotein [Escherichia coli DEC4D]
gi|419102658|ref|ZP_13647823.1| amidase and lipoprotein [Escherichia coli DEC4E]
gi|419108020|ref|ZP_13653129.1| amidase and lipoprotein [Escherichia coli DEC4F]
gi|419113791|ref|ZP_13658821.1| amidase and lipoprotein [Escherichia coli DEC5A]
gi|419125190|ref|ZP_13670087.1| amidase and lipoprotein [Escherichia coli DEC5C]
gi|419130676|ref|ZP_13675523.1| amidase and lipoprotein [Escherichia coli DEC5D]
gi|419135403|ref|ZP_13680209.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC5E]
gi|420268140|ref|ZP_14770544.1| putative regulator [Escherichia coli PA22]
gi|420273957|ref|ZP_14776289.1| putative regulator [Escherichia coli PA40]
gi|420279278|ref|ZP_14781543.1| putative regulator [Escherichia coli TW06591]
gi|420285328|ref|ZP_14787543.1| putative regulator [Escherichia coli TW10246]
gi|420291065|ref|ZP_14793228.1| putative regulator [Escherichia coli TW11039]
gi|420296664|ref|ZP_14798757.1| putative regulator [Escherichia coli TW09109]
gi|420302808|ref|ZP_14804834.1| putative regulator [Escherichia coli TW10119]
gi|420308095|ref|ZP_14810067.1| putative regulator [Escherichia coli EC1738]
gi|420313820|ref|ZP_14815725.1| putative regulator [Escherichia coli EC1734]
gi|421811147|ref|ZP_16246946.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0416]
gi|421817229|ref|ZP_16252784.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0821]
gi|421822632|ref|ZP_16258069.1| putative regulator [Escherichia coli FRIK920]
gi|421829370|ref|ZP_16264697.1| putative regulator [Escherichia coli PA7]
gi|423665205|ref|ZP_17640345.1| putative regulator [Escherichia coli PA31]
gi|424075819|ref|ZP_17813158.1| putative regulator [Escherichia coli FDA505]
gi|424082147|ref|ZP_17818998.1| putative regulator [Escherichia coli FDA517]
gi|424088780|ref|ZP_17825026.1| putative regulator [Escherichia coli FRIK1996]
gi|424094996|ref|ZP_17830739.1| putative regulator [Escherichia coli FRIK1985]
gi|424101417|ref|ZP_17836560.1| putative regulator [Escherichia coli FRIK1990]
gi|424108212|ref|ZP_17842778.1| putative regulator [Escherichia coli 93-001]
gi|424114203|ref|ZP_17848339.1| putative regulator [Escherichia coli PA3]
gi|424120263|ref|ZP_17853955.1| putative regulator [Escherichia coli PA5]
gi|424126502|ref|ZP_17859697.1| putative regulator [Escherichia coli PA9]
gi|424132608|ref|ZP_17865399.1| putative regulator [Escherichia coli PA10]
gi|424139152|ref|ZP_17871437.1| putative regulator [Escherichia coli PA14]
gi|424145592|ref|ZP_17877352.1| putative regulator [Escherichia coli PA15]
gi|424151727|ref|ZP_17882972.1| putative regulator [Escherichia coli PA24]
gi|424190217|ref|ZP_17888410.1| putative regulator [Escherichia coli PA25]
gi|424271787|ref|ZP_17894318.1| putative regulator [Escherichia coli PA28]
gi|424425878|ref|ZP_17900043.1| putative regulator [Escherichia coli PA32]
gi|424454141|ref|ZP_17905665.1| putative regulator [Escherichia coli PA33]
gi|424460457|ref|ZP_17911365.1| putative regulator [Escherichia coli PA39]
gi|424473485|ref|ZP_17923145.1| putative regulator [Escherichia coli PA42]
gi|424479417|ref|ZP_17928656.1| putative regulator [Escherichia coli TW07945]
gi|424485490|ref|ZP_17934343.1| putative regulator [Escherichia coli TW09098]
gi|424491671|ref|ZP_17940003.1| putative regulator [Escherichia coli TW09195]
gi|424498705|ref|ZP_17945967.1| putative regulator [Escherichia coli EC4203]
gi|424503867|ref|ZP_17950695.1| putative regulator [Escherichia coli EC4196]
gi|424511195|ref|ZP_17957405.1| putative regulator [Escherichia coli TW14313]
gi|424518725|ref|ZP_17963149.1| putative regulator [Escherichia coli TW14301]
gi|424524586|ref|ZP_17968599.1| putative regulator [Escherichia coli EC4421]
gi|424530790|ref|ZP_17974405.1| putative regulator [Escherichia coli EC4422]
gi|424536765|ref|ZP_17980015.1| putative regulator [Escherichia coli EC4013]
gi|424542689|ref|ZP_17985484.1| putative regulator [Escherichia coli EC4402]
gi|424549005|ref|ZP_17991193.1| putative regulator [Escherichia coli EC4439]
gi|424555250|ref|ZP_17996962.1| putative regulator [Escherichia coli EC4436]
gi|424561604|ref|ZP_18002884.1| putative regulator [Escherichia coli EC4437]
gi|424567634|ref|ZP_18008538.1| putative regulator [Escherichia coli EC4448]
gi|424573829|ref|ZP_18014238.1| putative regulator [Escherichia coli EC1845]
gi|424579776|ref|ZP_18019697.1| putative regulator [Escherichia coli EC1863]
gi|425096447|ref|ZP_18499460.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3.4870]
gi|425102590|ref|ZP_18505230.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 5.2239]
gi|425108396|ref|ZP_18510634.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 6.0172]
gi|425124230|ref|ZP_18525788.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0586]
gi|425130259|ref|ZP_18531348.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.2524]
gi|425136626|ref|ZP_18537340.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0833]
gi|425142465|ref|ZP_18542752.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0869]
gi|425148815|ref|ZP_18548692.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.0221]
gi|425154418|ref|ZP_18553960.1| putative regulator [Escherichia coli PA34]
gi|425160865|ref|ZP_18560036.1| putative regulator [Escherichia coli FDA506]
gi|425166395|ref|ZP_18565196.1| putative regulator [Escherichia coli FDA507]
gi|425172679|ref|ZP_18571068.1| putative regulator [Escherichia coli FDA504]
gi|425178569|ref|ZP_18576611.1| putative regulator [Escherichia coli FRIK1999]
gi|425184715|ref|ZP_18582329.1| putative regulator [Escherichia coli FRIK1997]
gi|425191475|ref|ZP_18588591.1| putative regulator [Escherichia coli NE1487]
gi|425197783|ref|ZP_18594425.1| putative regulator [Escherichia coli NE037]
gi|425204449|ref|ZP_18600569.1| putative regulator [Escherichia coli FRIK2001]
gi|425210202|ref|ZP_18605928.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA4]
gi|425216254|ref|ZP_18611559.1| putative regulator [Escherichia coli PA23]
gi|425222836|ref|ZP_18617678.1| putative regulator [Escherichia coli PA49]
gi|425229061|ref|ZP_18623444.1| putative regulator [Escherichia coli PA45]
gi|425235366|ref|ZP_18629320.1| putative regulator [Escherichia coli TT12B]
gi|425241363|ref|ZP_18634991.1| putative regulator [Escherichia coli MA6]
gi|425247490|ref|ZP_18640685.1| putative regulator [Escherichia coli 5905]
gi|425253227|ref|ZP_18646086.1| putative regulator [Escherichia coli CB7326]
gi|425259501|ref|ZP_18651860.1| putative regulator [Escherichia coli EC96038]
gi|425265646|ref|ZP_18657547.1| putative regulator [Escherichia coli 5412]
gi|425293089|ref|ZP_18683653.1| putative regulator [Escherichia coli PA38]
gi|425309816|ref|ZP_18699270.1| putative regulator [Escherichia coli EC1735]
gi|425315740|ref|ZP_18704802.1| putative regulator [Escherichia coli EC1736]
gi|425321808|ref|ZP_18710464.1| putative regulator [Escherichia coli EC1737]
gi|425328000|ref|ZP_18716204.1| putative regulator [Escherichia coli EC1846]
gi|425334185|ref|ZP_18721885.1| putative regulator [Escherichia coli EC1847]
gi|425340595|ref|ZP_18727820.1| putative regulator [Escherichia coli EC1848]
gi|425346460|ref|ZP_18733251.1| putative regulator [Escherichia coli EC1849]
gi|425352697|ref|ZP_18739061.1| putative regulator [Escherichia coli EC1850]
gi|425358686|ref|ZP_18744643.1| putative regulator [Escherichia coli EC1856]
gi|425364805|ref|ZP_18750328.1| putative regulator [Escherichia coli EC1862]
gi|425371247|ref|ZP_18756193.1| putative regulator [Escherichia coli EC1864]
gi|425384039|ref|ZP_18767902.1| putative regulator [Escherichia coli EC1866]
gi|425390730|ref|ZP_18774170.1| putative regulator [Escherichia coli EC1868]
gi|425396849|ref|ZP_18779878.1| putative regulator [Escherichia coli EC1869]
gi|425402836|ref|ZP_18785427.1| putative regulator [Escherichia coli EC1870]
gi|425409374|ref|ZP_18791512.1| putative regulator [Escherichia coli NE098]
gi|425415656|ref|ZP_18797276.1| putative regulator [Escherichia coli FRIK523]
gi|425426789|ref|ZP_18807828.1| putative regulator [Escherichia coli 0.1304]
gi|428945485|ref|ZP_19018099.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.1467]
gi|428951619|ref|ZP_19023725.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.1042]
gi|428957481|ref|ZP_19029148.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 89.0511]
gi|428963806|ref|ZP_19034967.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.0091]
gi|428969997|ref|ZP_19040610.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.0039]
gi|428976346|ref|ZP_19046500.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.2281]
gi|428982209|ref|ZP_19051926.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 93.0055]
gi|428988412|ref|ZP_19057679.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 93.0056]
gi|428994213|ref|ZP_19063104.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 94.0618]
gi|429000349|ref|ZP_19068835.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0183]
gi|429006536|ref|ZP_19074423.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.1288]
gi|429012865|ref|ZP_19080102.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0943]
gi|429019092|ref|ZP_19085857.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0428]
gi|429024790|ref|ZP_19091180.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0427]
gi|429031122|ref|ZP_19096973.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0939]
gi|429037274|ref|ZP_19102698.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0932]
gi|429043196|ref|ZP_19108176.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0107]
gi|429048962|ref|ZP_19113615.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0003]
gi|429054367|ref|ZP_19118839.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.1742]
gi|429060011|ref|ZP_19124143.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0007]
gi|429065520|ref|ZP_19129360.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0672]
gi|429072042|ref|ZP_19135388.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0678]
gi|429077369|ref|ZP_19140577.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0713]
gi|429824613|ref|ZP_19356083.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0109]
gi|429830972|ref|ZP_19361782.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0010]
gi|444923304|ref|ZP_21242982.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli
09BKT078844]
gi|444929608|ref|ZP_21248747.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0814]
gi|444939420|ref|ZP_21258103.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0815]
gi|444939483|ref|ZP_21258157.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0816]
gi|444946090|ref|ZP_21264500.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0839]
gi|444951641|ref|ZP_21269852.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0848]
gi|444957116|ref|ZP_21275102.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1753]
gi|444962394|ref|ZP_21280131.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1775]
gi|444968117|ref|ZP_21285583.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1793]
gi|444977963|ref|ZP_21294990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1805]
gi|444979164|ref|ZP_21296149.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli ATCC
700728]
gi|444984453|ref|ZP_21301313.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA11]
gi|444989698|ref|ZP_21306429.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA19]
gi|444995046|ref|ZP_21311634.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA13]
gi|445000557|ref|ZP_21317011.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA2]
gi|445006016|ref|ZP_21322346.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA47]
gi|445011127|ref|ZP_21327311.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA48]
gi|445016961|ref|ZP_21333003.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA8]
gi|445022397|ref|ZP_21338311.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 7.1982]
gi|445027654|ref|ZP_21343422.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1781]
gi|445033156|ref|ZP_21348768.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1762]
gi|445038846|ref|ZP_21354308.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA35]
gi|445044145|ref|ZP_21359472.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3.4880]
gi|445049638|ref|ZP_21364794.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0083]
gi|445055290|ref|ZP_21370231.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0670]
gi|452970874|ref|ZP_21969101.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
EC4009]
gi|12513894|gb|AAG55249.1|AE005268_2 putative regulator [Escherichia coli O157:H7 str. EDL933]
gi|13360412|dbj|BAB34376.1| putative regulator [Escherichia coli O157:H7 str. Sakai]
gi|187768253|gb|EDU32097.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4196]
gi|188015749|gb|EDU53871.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4113]
gi|189002820|gb|EDU71806.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4076]
gi|189356258|gb|EDU74677.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4401]
gi|189363519|gb|EDU81938.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4486]
gi|189366534|gb|EDU84950.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4501]
gi|189373178|gb|EDU91594.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC869]
gi|189377738|gb|EDU96154.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC508]
gi|208728577|gb|EDZ78178.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4206]
gi|208732129|gb|EDZ80817.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4045]
gi|208738026|gb|EDZ85709.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4042]
gi|209157534|gb|ACI34967.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. EC4115]
gi|209775258|gb|ACI85941.1| putative regulator [Escherichia coli]
gi|209775260|gb|ACI85942.1| putative regulator [Escherichia coli]
gi|209775262|gb|ACI85943.1| putative regulator [Escherichia coli]
gi|209775264|gb|ACI85944.1| putative regulator [Escherichia coli]
gi|209775266|gb|ACI85945.1| putative regulator [Escherichia coli]
gi|217321234|gb|EEC29658.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. TW14588]
gi|254591468|gb|ACT70829.1| predicted amidase and lipoprotein [Escherichia coli O157:H7 str.
TW14359]
gi|290761744|gb|ADD55705.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. CB9615]
gi|320192647|gb|EFW67288.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
EC1212]
gi|320637738|gb|EFX07530.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. G5101]
gi|320642861|gb|EFX12062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H-
str. 493-89]
gi|320648318|gb|EFX16973.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H-
str. H 2687]
gi|320659779|gb|EFX27335.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. USDA 5905]
gi|320664250|gb|EFX31401.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O157:H7
str. LSU-61]
gi|326338238|gb|EGD62067.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
1125]
gi|326346215|gb|EGD69953.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
1044]
gi|374357974|gb|AEZ39681.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. RM12579]
gi|377899760|gb|EHU64106.1| amidase and lipoprotein [Escherichia coli DEC3A]
gi|377901581|gb|EHU65897.1| amidase and lipoprotein [Escherichia coli DEC3B]
gi|377913193|gb|EHU77337.1| amidase and lipoprotein [Escherichia coli DEC3C]
gi|377917257|gb|EHU81322.1| amidase and lipoprotein [Escherichia coli DEC3D]
gi|377918883|gb|EHU82927.1| amidase and lipoprotein [Escherichia coli DEC3E]
gi|377931110|gb|EHU94980.1| amidase and lipoprotein [Escherichia coli DEC3F]
gi|377933390|gb|EHU97235.1| amidase and lipoprotein [Escherichia coli DEC4A]
gi|377938291|gb|EHV02059.1| amidase and lipoprotein [Escherichia coli DEC4B]
gi|377949189|gb|EHV12829.1| amidase and lipoprotein [Escherichia coli DEC4C]
gi|377950377|gb|EHV14005.1| amidase and lipoprotein [Escherichia coli DEC4D]
gi|377953826|gb|EHV17390.1| amidase and lipoprotein [Escherichia coli DEC4E]
gi|377964491|gb|EHV27926.1| amidase and lipoprotein [Escherichia coli DEC5A]
gi|377966387|gb|EHV29799.1| amidase and lipoprotein [Escherichia coli DEC4F]
gi|377979119|gb|EHV42397.1| amidase and lipoprotein [Escherichia coli DEC5C]
gi|377979247|gb|EHV42524.1| amidase and lipoprotein [Escherichia coli DEC5D]
gi|377986552|gb|EHV49742.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC5E]
gi|386794940|gb|AFJ27974.1| putative regulator [Escherichia coli Xuzhou21]
gi|390649830|gb|EIN28302.1| putative regulator [Escherichia coli FRIK1996]
gi|390651753|gb|EIN30023.1| putative regulator [Escherichia coli FDA517]
gi|390652210|gb|EIN30440.1| putative regulator [Escherichia coli FDA505]
gi|390669138|gb|EIN45843.1| putative regulator [Escherichia coli 93-001]
gi|390671799|gb|EIN48175.1| putative regulator [Escherichia coli FRIK1990]
gi|390672261|gb|EIN48571.1| putative regulator [Escherichia coli FRIK1985]
gi|390687875|gb|EIN63020.1| putative regulator [Escherichia coli PA3]
gi|390690766|gb|EIN65552.1| putative regulator [Escherichia coli PA9]
gi|390691295|gb|EIN66049.1| putative regulator [Escherichia coli PA5]
gi|390707565|gb|EIN80909.1| putative regulator [Escherichia coli PA10]
gi|390709325|gb|EIN82435.1| putative regulator [Escherichia coli PA15]
gi|390710604|gb|EIN83622.1| putative regulator [Escherichia coli PA14]
gi|390719447|gb|EIN92172.1| putative regulator [Escherichia coli PA22]
gi|390732571|gb|EIO04256.1| putative regulator [Escherichia coli PA25]
gi|390732664|gb|EIO04347.1| putative regulator [Escherichia coli PA24]
gi|390735344|gb|EIO06738.1| putative regulator [Escherichia coli PA28]
gi|390750870|gb|EIO20854.1| putative regulator [Escherichia coli PA31]
gi|390751267|gb|EIO21191.1| putative regulator [Escherichia coli PA32]
gi|390754018|gb|EIO23648.1| putative regulator [Escherichia coli PA33]
gi|390762044|gb|EIO31314.1| putative regulator [Escherichia coli PA40]
gi|390776848|gb|EIO44727.1| putative regulator [Escherichia coli PA42]
gi|390780830|gb|EIO48523.1| putative regulator [Escherichia coli PA39]
gi|390784988|gb|EIO52544.1| putative regulator [Escherichia coli TW06591]
gi|390794191|gb|EIO61490.1| putative regulator [Escherichia coli TW10246]
gi|390801096|gb|EIO68162.1| putative regulator [Escherichia coli TW11039]
gi|390808081|gb|EIO74927.1| putative regulator [Escherichia coli TW07945]
gi|390811402|gb|EIO78116.1| putative regulator [Escherichia coli TW09109]
gi|390818633|gb|EIO85002.1| putative regulator [Escherichia coli TW10119]
gi|390821382|gb|EIO87572.1| putative regulator [Escherichia coli TW09098]
gi|390836333|gb|EIP00886.1| putative regulator [Escherichia coli EC4203]
gi|390839417|gb|EIP03525.1| putative regulator [Escherichia coli TW09195]
gi|390841242|gb|EIP05203.1| putative regulator [Escherichia coli EC4196]
gi|390854851|gb|EIP17628.1| putative regulator [Escherichia coli TW14301]
gi|390857364|gb|EIP19800.1| putative regulator [Escherichia coli TW14313]
gi|390857827|gb|EIP20253.1| putative regulator [Escherichia coli EC4421]
gi|390870593|gb|EIP32094.1| putative regulator [Escherichia coli EC4422]
gi|390875037|gb|EIP36119.1| putative regulator [Escherichia coli EC4013]
gi|390884628|gb|EIP44915.1| putative regulator [Escherichia coli EC4402]
gi|390887060|gb|EIP47055.1| putative regulator [Escherichia coli EC4439]
gi|390892703|gb|EIP52274.1| putative regulator [Escherichia coli EC4436]
gi|390903490|gb|EIP62536.1| putative regulator [Escherichia coli EC1738]
gi|390908440|gb|EIP67263.1| putative regulator [Escherichia coli EC4437]
gi|390911314|gb|EIP70019.1| putative regulator [Escherichia coli EC1734]
gi|390913510|gb|EIP72096.1| putative regulator [Escherichia coli EC4448]
gi|390924190|gb|EIP81992.1| putative regulator [Escherichia coli EC1863]
gi|390925597|gb|EIP83231.1| putative regulator [Escherichia coli EC1845]
gi|408071697|gb|EKH06032.1| putative regulator [Escherichia coli PA7]
gi|408075814|gb|EKH10046.1| putative regulator [Escherichia coli FRIK920]
gi|408085469|gb|EKH19093.1| putative regulator [Escherichia coli PA34]
gi|408089306|gb|EKH22637.1| putative regulator [Escherichia coli FDA506]
gi|408094102|gb|EKH27147.1| putative regulator [Escherichia coli FDA507]
gi|408101137|gb|EKH33606.1| putative regulator [Escherichia coli FDA504]
gi|408109388|gb|EKH41315.1| putative regulator [Escherichia coli FRIK1999]
gi|408115841|gb|EKH47206.1| putative regulator [Escherichia coli FRIK1997]
gi|408121155|gb|EKH52119.1| putative regulator [Escherichia coli NE1487]
gi|408129278|gb|EKH59511.1| putative regulator [Escherichia coli NE037]
gi|408131045|gb|EKH61106.1| putative regulator [Escherichia coli FRIK2001]
gi|408140188|gb|EKH69723.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA4]
gi|408149521|gb|EKH78199.1| putative regulator [Escherichia coli PA23]
gi|408151278|gb|EKH79786.1| putative regulator [Escherichia coli PA49]
gi|408156527|gb|EKH84729.1| putative regulator [Escherichia coli PA45]
gi|408166238|gb|EKH93856.1| putative regulator [Escherichia coli TT12B]
gi|408170949|gb|EKH98099.1| putative regulator [Escherichia coli MA6]
gi|408172944|gb|EKH99996.1| putative regulator [Escherichia coli 5905]
gi|408186227|gb|EKI12334.1| putative regulator [Escherichia coli CB7326]
gi|408190244|gb|EKI15915.1| putative regulator [Escherichia coli 5412]
gi|408190536|gb|EKI16181.1| putative regulator [Escherichia coli EC96038]
gi|408231503|gb|EKI54770.1| putative regulator [Escherichia coli PA38]
gi|408237503|gb|EKI60358.1| putative regulator [Escherichia coli EC1735]
gi|408248313|gb|EKI70368.1| putative regulator [Escherichia coli EC1736]
gi|408251935|gb|EKI73644.1| putative regulator [Escherichia coli EC1737]
gi|408258144|gb|EKI79427.1| putative regulator [Escherichia coli EC1846]
gi|408267086|gb|EKI87555.1| putative regulator [Escherichia coli EC1847]
gi|408268996|gb|EKI89318.1| putative regulator [Escherichia coli EC1848]
gi|408278262|gb|EKI98024.1| putative regulator [Escherichia coli EC1849]
gi|408284109|gb|EKJ03238.1| putative regulator [Escherichia coli EC1850]
gi|408286711|gb|EKJ05630.1| putative regulator [Escherichia coli EC1856]
gi|408299158|gb|EKJ16987.1| putative regulator [Escherichia coli EC1862]
gi|408299631|gb|EKJ17402.1| putative regulator [Escherichia coli EC1864]
gi|408315596|gb|EKJ31911.1| putative regulator [Escherichia coli EC1868]
gi|408315994|gb|EKJ32292.1| putative regulator [Escherichia coli EC1866]
gi|408330536|gb|EKJ45799.1| putative regulator [Escherichia coli EC1869]
gi|408335429|gb|EKJ50275.1| putative regulator [Escherichia coli NE098]
gi|408337071|gb|EKJ51817.1| putative regulator [Escherichia coli EC1870]
gi|408349666|gb|EKJ63588.1| putative regulator [Escherichia coli FRIK523]
gi|408352677|gb|EKJ66221.1| putative regulator [Escherichia coli 0.1304]
gi|408557751|gb|EKK34174.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 5.2239]
gi|408558061|gb|EKK34476.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3.4870]
gi|408558514|gb|EKK34878.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 6.0172]
gi|408584626|gb|EKK59626.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0586]
gi|408588649|gb|EKK63221.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.2524]
gi|408589654|gb|EKK64156.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0833]
gi|408603469|gb|EKK77110.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0869]
gi|408605219|gb|EKK78748.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 8.0416]
gi|408606723|gb|EKK80149.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.0221]
gi|408616422|gb|EKK89577.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 10.0821]
gi|427213645|gb|EKV83050.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.1042]
gi|427215495|gb|EKV84677.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 89.0511]
gi|427215625|gb|EKV84797.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 88.1467]
gi|427232889|gb|EKW00688.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.2281]
gi|427233130|gb|EKW00916.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.0039]
gi|427234692|gb|EKW02369.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 90.0091]
gi|427250466|gb|EKW17137.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 93.0056]
gi|427252093|gb|EKW18615.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 93.0055]
gi|427253325|gb|EKW19767.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 94.0618]
gi|427269584|gb|EKW34541.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0183]
gi|427269742|gb|EKW34694.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0943]
gi|427273708|gb|EKW38379.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.1288]
gi|427285750|gb|EKW49689.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0428]
gi|427291197|gb|EKW54641.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0427]
gi|427292752|gb|EKW56079.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0939]
gi|427304363|gb|EKW67020.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0003]
gi|427305395|gb|EKW67990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0932]
gi|427309424|gb|EKW71742.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0107]
gi|427320553|gb|EKW82312.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.1742]
gi|427321427|gb|EKW83121.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0007]
gi|427333261|gb|EKW94371.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0713]
gi|427333473|gb|EKW94578.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0678]
gi|427336415|gb|EKW97393.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0672]
gi|429259372|gb|EKY43069.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 96.0109]
gi|429261305|gb|EKY44753.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 97.0010]
gi|444541743|gb|ELV21187.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0814]
gi|444543948|gb|ELV23083.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0815]
gi|444549467|gb|ELV27710.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli
09BKT078844]
gi|444564081|gb|ELV41045.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0839]
gi|444568644|gb|ELV45302.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0816]
gi|444570000|gb|ELV46550.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0848]
gi|444581064|gb|ELV56939.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1753]
gi|444584170|gb|ELV59826.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1775]
gi|444585312|gb|ELV60890.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1793]
gi|444585582|gb|ELV61143.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1805]
gi|444598754|gb|ELV73667.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli ATCC
700728]
gi|444599319|gb|ELV74209.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA11]
gi|444613479|gb|ELV87738.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA19]
gi|444613596|gb|ELV87854.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA13]
gi|444621910|gb|ELV95878.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA2]
gi|444631268|gb|ELW04872.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA48]
gi|444631532|gb|ELW05130.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA47]
gi|444636300|gb|ELW09702.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA8]
gi|444646680|gb|ELW19682.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 7.1982]
gi|444649348|gb|ELW22249.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1781]
gi|444652319|gb|ELW25082.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.1762]
gi|444661795|gb|ELW34083.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli PA35]
gi|444665957|gb|ELW38051.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3.4880]
gi|444672037|gb|ELW43797.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 95.0083]
gi|444674088|gb|ELW45672.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 99.0670]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|433129219|ref|ZP_20314687.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE163]
gi|431650797|gb|ELJ18108.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE163]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD + + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRINFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|432415854|ref|ZP_19658478.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE44]
gi|430942399|gb|ELC62532.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE44]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRHVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|82543354|ref|YP_407301.1| regulator [Shigella boydii Sb227]
gi|81244765|gb|ABB65473.1| putative regulator [Shigella boydii Sb227]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLDKYGQ 275
>gi|293433165|ref|ZP_06661593.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B088]
gi|417152494|ref|ZP_11991285.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 96.0497]
gi|417580133|ref|ZP_12230950.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_B2F1]
gi|417666007|ref|ZP_12315569.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_O31]
gi|419369138|ref|ZP_13910264.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC14A]
gi|419952116|ref|ZP_14468292.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli CUMT8]
gi|432966965|ref|ZP_20155881.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE203]
gi|291323984|gb|EFE63406.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli B088]
gi|345342478|gb|EGW74872.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli
STEC_B2F1]
gi|378220813|gb|EHX81064.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC14A]
gi|386169218|gb|EIH35726.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 96.0497]
gi|388413083|gb|EIL73099.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli CUMT8]
gi|397786558|gb|EJK97394.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli STEC_O31]
gi|431472937|gb|ELH52771.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE203]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 131/268 (48%), Gaps = 27/268 (10%)
Query: 20 EKNRNHYDSRDGMSVKY-----LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
EK D+R Y L++HYT +F + T + SSHY++ +
Sbjct: 25 EKEGYQLDTRRQAQAAYPRIRVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPR 80
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFD 133
Y ++ Q+VP+ AWHAGI WR LN SIGI L N G +K Y+ PF+
Sbjct: 81 YNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFE 138
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI L L KDI++++ IKP+ V+ H DIAP K DPGPLFPW +L GIGAW P
Sbjct: 139 PAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--P 195
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSA 249
D V + P P +D LELL YGY+V T +R VI AF+ HF
Sbjct: 196 DAQRVNFYLAGRAPHTP----VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF-- 249
Query: 250 NQNPERIYADITTEDMFWAWALVAKYGS 277
P + E A AL+ KYG
Sbjct: 250 --RPTLYNGEADAETQAIAEALLEKYGQ 275
>gi|432453627|ref|ZP_19695864.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE193]
gi|433032367|ref|ZP_20220141.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE112]
gi|430973766|gb|ELC90711.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE193]
gi|431558753|gb|ELI32362.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE112]
Length = 276
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIIAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|170682080|ref|YP_001742976.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SMS-3-5]
gi|170519798|gb|ACB17976.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SMS-3-5]
Length = 276
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K +++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVMVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|417690203|ref|ZP_12339427.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella boydii 5216-82]
gi|332088873|gb|EGI93985.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella boydii 5216-82]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGSTRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIG W PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGVW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTSREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|419699719|ref|ZP_14227331.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SCI-07]
gi|380348825|gb|EIA37101.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SCI-07]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADGFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|450186720|ref|ZP_21889638.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SEPT362]
gi|449324239|gb|EMD14176.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli SEPT362]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELQNRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V F A P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRV-----NFYLAGRAP 209
Query: 213 RKL-DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
L D LELL YGY+V T +R VI AF+ HF P + E
Sbjct: 210 HTLVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|422782296|ref|ZP_16835081.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TW10509]
gi|323976747|gb|EGB71835.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TW10509]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 127/247 (51%), Gaps = 22/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKY 275
AL+ KY
Sbjct: 267 EALLEKY 273
>gi|82777612|ref|YP_403961.1| regulator [Shigella dysenteriae Sd197]
gi|309783983|ref|ZP_07678627.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella dysenteriae 1617]
gi|81241760|gb|ABB62470.1| putative regulator [Shigella dysenteriae Sd197]
gi|308928126|gb|EFP73589.1| N-acetylmuramoyl-L-alanine amidase amiD [Shigella dysenteriae 1617]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTTSLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|284008349|emb|CBA74732.1| N-acetylmuramoyl-L-alanine amidase [Arsenophonus nasoniae]
Length = 280
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 126/252 (50%), Gaps = 29/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE----KEGKYLPGGKVIQIVPDNM 89
VK+LI HYT N A + T + S+HY+I E K GK + + +VP+N
Sbjct: 43 VKFLIFHYTAVNDARSLQILTQAKV----SAHYLIPEIPKIKSGKPV----IFNLVPENK 94
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG+ W NLN SIGI +VN G + +YPF+E QI + +L KDI+
Sbjct: 95 RAWHAGLSNWNGRLNLNDSSIGIEIVNKGFTEDMLGDKVWYPFNEQQISAIIVLAKDIIK 154
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I P VL H+DIAP K DPG FPW +L D GIGAW PDEMT V+K+ R
Sbjct: 155 RYNITPDNVLAHSDIAPLRKYDPGKNFPWKRL-ADLGIGAW--PDEMT----VKKYLAGR 207
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITN------KRSVIRAFKTHFSANQNPERIYADITTE 263
+ L+ YGY+ + R I AF+ HF P I + E
Sbjct: 208 SRYAPASVSTIQKYLQKYGYDKIPQSGELDEETRRTISAFQLHF----RPANISGNADAE 263
Query: 264 DMFWAWALVAKY 275
ALV KY
Sbjct: 264 TEAIVRALVEKY 275
>gi|238920114|ref|YP_002933629.1| N-acetylmuramoyl-L-alanine amidase, putative [Edwardsiella ictaluri
93-146]
gi|238869683|gb|ACR69394.1| N-acetylmuramoyl-L-alanine amidase, putative [Edwardsiella ictaluri
93-146]
Length = 294
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 126/249 (50%), Gaps = 23/249 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
+++L+LHYT + + T + S+HY+I KE K + G V+ Q+V +N RAW
Sbjct: 57 IRFLVLHYTAVDDVSSLNILTKEQV----SAHYLIP-KEPKSIHGQPVVLQLVDENKRAW 111
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAGI W LN SIGI +VN G +YP+ E QI + L KDIV+++
Sbjct: 112 HAGISSWNGRSGLNDTSIGIEIVNLGYTDNMLGQRTWYPYTEKQIAAVAALAKDIVNRYH 171
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+P V+GH+DIAP K DPG LFPW L GIGAW PD TV + P P
Sbjct: 172 IEPDNVVGHSDIAPLRKQDPGKLFPWEHLAA-MGIGAW--PDRSTVNKYLADRSPHSP-- 226
Query: 213 RKLDRGIFLELLKAYGYN------VTITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ + LLK YGY+ V N R + AF+ HF P I + E
Sbjct: 227 --VKVSVIQALLKQYGYDQIPQNGVLDENTRKTVSAFQMHF----RPSDISGNADAETEA 280
Query: 267 WAWALVAKY 275
A AL+ KY
Sbjct: 281 IARALLEKY 289
>gi|331682376|ref|ZP_08382995.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H299]
gi|331080007|gb|EGI51186.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H299]
Length = 276
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V F A P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRV-----NFYLAGRAP 209
Query: 213 RKL-DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
L D LELL YGY+V T +R VI AF+ HF P + E
Sbjct: 210 HTLVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|260867040|ref|YP_003233442.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O111:H- str. 11128]
gi|415824728|ref|ZP_11512962.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli OK1180]
gi|417192881|ref|ZP_12014728.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 4.0522]
gi|417590589|ref|ZP_12241304.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 2534-86]
gi|419195985|ref|ZP_13739389.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC8A]
gi|419891695|ref|ZP_14411740.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9570]
gi|419894620|ref|ZP_14414516.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9574]
gi|420088745|ref|ZP_14600605.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9602]
gi|420098081|ref|ZP_14609362.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9634]
gi|424769401|ref|ZP_18196628.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CFSAN001632]
gi|257763396|dbj|BAI34891.1| 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase [Escherichia
coli O111:H- str. 11128]
gi|323175511|gb|EFZ61106.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli OK1180]
gi|345344535|gb|EGW76902.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 2534-86]
gi|378051793|gb|EHW14108.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC8A]
gi|386190062|gb|EIH78810.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 4.0522]
gi|388349043|gb|EIL14593.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9570]
gi|388363457|gb|EIL27386.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9574]
gi|394382260|gb|EJE59907.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9634]
gi|394389535|gb|EJE66677.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CVM9602]
gi|421944050|gb|EKU01312.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O111:H8
str. CFSAN001632]
Length = 276
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLVKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|215485998|ref|YP_002328429.1| amidase [Escherichia coli O127:H6 str. E2348/69]
gi|312969066|ref|ZP_07783273.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 2362-75]
gi|417754766|ref|ZP_12402857.1| amidase and lipoprotein [Escherichia coli DEC2B]
gi|418996001|ref|ZP_13543608.1| amidase and lipoprotein [Escherichia coli DEC1A]
gi|419001133|ref|ZP_13548684.1| amidase and lipoprotein [Escherichia coli DEC1B]
gi|419006623|ref|ZP_13554076.1| amidase and lipoprotein [Escherichia coli DEC1C]
gi|419012467|ref|ZP_13559831.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC1D]
gi|419017465|ref|ZP_13564784.1| amidase and lipoprotein [Escherichia coli DEC1E]
gi|419023057|ref|ZP_13570298.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC2A]
gi|419027925|ref|ZP_13575117.1| amidase and lipoprotein [Escherichia coli DEC2C]
gi|419033810|ref|ZP_13580906.1| amidase and lipoprotein [Escherichia coli DEC2D]
gi|419038733|ref|ZP_13585786.1| amidase and lipoprotein [Escherichia coli DEC2E]
gi|215264070|emb|CAS08412.1| predicted amidase and lipoprotein [Escherichia coli O127:H6 str.
E2348/69]
gi|312286468|gb|EFR14381.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 2362-75]
gi|377847991|gb|EHU12988.1| amidase and lipoprotein [Escherichia coli DEC1A]
gi|377849699|gb|EHU14668.1| amidase and lipoprotein [Escherichia coli DEC1C]
gi|377852481|gb|EHU17400.1| amidase and lipoprotein [Escherichia coli DEC1B]
gi|377862090|gb|EHU26904.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC1D]
gi|377865921|gb|EHU30711.1| amidase and lipoprotein [Escherichia coli DEC1E]
gi|377868067|gb|EHU32816.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli DEC2A]
gi|377878209|gb|EHU42797.1| amidase and lipoprotein [Escherichia coli DEC2B]
gi|377882987|gb|EHU47518.1| amidase and lipoprotein [Escherichia coli DEC2D]
gi|377884052|gb|EHU48569.1| amidase and lipoprotein [Escherichia coli DEC2C]
gi|377897194|gb|EHU61577.1| amidase and lipoprotein [Escherichia coli DEC2E]
Length = 276
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLLIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V F A P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRV-----NFYLAGRAP 209
Query: 213 RKL-DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
L D LELL YGY+V T +R VI AF+ HF P + E
Sbjct: 210 HTLVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|425299132|ref|ZP_18689174.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 07798]
gi|408221075|gb|EKI45058.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 07798]
Length = 276
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|253989225|ref|YP_003040581.1| probable N-acetylmuramoyl-L-alanine amidase [Photorhabdus
asymbiotica]
gi|253780675|emb|CAQ83837.1| probable N-acetylmuramoyl-L-alanine amidase [Photorhabdus
asymbiotica]
Length = 275
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 133/249 (53%), Gaps = 25/249 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVIQIVPDNMRA 91
+++L+ HYT N + T S+HY+I K K P V+++VP++ RA
Sbjct: 43 IRFLVFHYTAVNDEDSLRILTQGGV----SAHYLIPSLPKHAKGKP--VVLELVPEDKRA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ W ++LN SIGI +VN G E+ +YPF+E QI L + KDI+ ++
Sbjct: 97 WHAGVSAWNGRKDLNDTSIGIEIVNKGFT-ERLLEKEWYPFNERQIDLLTRMAKDIIQRY 155
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I+PQ V+GH+DIAP K DPG FPW +L + GIGAW PD++TVE K+ R +
Sbjct: 156 NIEPQNVIGHSDIAPLRKYDPGKDFPWKEL-AEQGIGAW--PDDVTVE----KYMAGRKW 208
Query: 212 PRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ + L+ YGY + T + R I AF+ HF P+ I + +
Sbjct: 209 NEMASVELIQKTLEKYGYTIPQTGVLDEDTRRTISAFQMHF----RPDDISGNPDAQTES 264
Query: 267 WAWALVAKY 275
A ALV KY
Sbjct: 265 IASALVEKY 273
>gi|26246890|ref|NP_752930.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli CFT073]
gi|191172077|ref|ZP_03033621.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli F11]
gi|218688649|ref|YP_002396861.1| putative cell wall amidase and lipoprotein [Escherichia coli ED1a]
gi|222155591|ref|YP_002555730.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli LF82]
gi|227884169|ref|ZP_04001974.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli 83972]
gi|300991839|ref|ZP_07179664.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 200-1]
gi|300993471|ref|ZP_07180413.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 45-1]
gi|301051205|ref|ZP_07198034.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 185-1]
gi|331646135|ref|ZP_08347238.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M605]
gi|331656940|ref|ZP_08357902.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA206]
gi|386618325|ref|YP_006137905.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli NA114]
gi|386628406|ref|YP_006148126.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli str.
'clone D i2']
gi|386633326|ref|YP_006153045.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli str.
'clone D i14']
gi|386638218|ref|YP_006105016.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli ABU 83972]
gi|387616123|ref|YP_006119145.1| putative cell wall amidase and lipoprotein [Escherichia coli O83:H1
str. NRG 857C]
gi|387828845|ref|YP_003348782.1| putative regulator [Escherichia coli SE15]
gi|415836969|ref|ZP_11519219.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli RN587/1]
gi|417282865|ref|ZP_12070163.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3003]
gi|422364777|ref|ZP_16445288.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 153-1]
gi|422368855|ref|ZP_16449259.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 16-3]
gi|422375663|ref|ZP_16455926.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 60-1]
gi|422378957|ref|ZP_16459160.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 57-2]
gi|425276816|ref|ZP_18668142.1| putative N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
ARS4.2123]
gi|432396751|ref|ZP_19639536.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE25]
gi|432405683|ref|ZP_19648403.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE28]
gi|432410868|ref|ZP_19653549.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE39]
gi|432420942|ref|ZP_19663497.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE178]
gi|432430916|ref|ZP_19673359.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE187]
gi|432435444|ref|ZP_19677843.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE188]
gi|432440228|ref|ZP_19682580.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE189]
gi|432445358|ref|ZP_19687664.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE191]
gi|432455731|ref|ZP_19697930.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE201]
gi|432464830|ref|ZP_19706936.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE205]
gi|432470235|ref|ZP_19712287.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE206]
gi|432494669|ref|ZP_19736485.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE214]
gi|432499079|ref|ZP_19740855.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE216]
gi|432503508|ref|ZP_19745243.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE220]
gi|432522953|ref|ZP_19760090.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE230]
gi|432557848|ref|ZP_19794537.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE49]
gi|432567699|ref|ZP_19804224.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE53]
gi|432582926|ref|ZP_19819336.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE57]
gi|432591919|ref|ZP_19828246.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE60]
gi|432606686|ref|ZP_19842879.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE67]
gi|432650328|ref|ZP_19886088.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE87]
gi|432693619|ref|ZP_19928830.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE162]
gi|432709665|ref|ZP_19944730.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE6]
gi|432712525|ref|ZP_19947574.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE8]
gi|432722378|ref|ZP_19957301.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE17]
gi|432726966|ref|ZP_19961847.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE18]
gi|432731576|ref|ZP_19966412.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE45]
gi|432740652|ref|ZP_19975373.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE23]
gi|432758654|ref|ZP_19993154.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE46]
gi|432782752|ref|ZP_20016936.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE63]
gi|432801146|ref|ZP_20035131.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE84]
gi|432843171|ref|ZP_20076506.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE141]
gi|432893603|ref|ZP_20105615.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE165]
gi|432897798|ref|ZP_20108629.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE192]
gi|432918089|ref|ZP_20122494.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE173]
gi|432925379|ref|ZP_20127408.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE175]
gi|432977525|ref|ZP_20166348.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE209]
gi|432980340|ref|ZP_20169118.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE211]
gi|432989965|ref|ZP_20178631.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE217]
gi|432994597|ref|ZP_20183211.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE218]
gi|432999015|ref|ZP_20187553.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE223]
gi|433013084|ref|ZP_20201459.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE104]
gi|433022726|ref|ZP_20210738.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE106]
gi|433027892|ref|ZP_20215764.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE109]
gi|433057159|ref|ZP_20244242.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE124]
gi|433071917|ref|ZP_20258611.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE129]
gi|433077026|ref|ZP_20263588.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE131]
gi|433086476|ref|ZP_20272871.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE137]
gi|433095762|ref|ZP_20281973.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE139]
gi|433104972|ref|ZP_20290990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE148]
gi|433110187|ref|ZP_20296061.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE150]
gi|433114751|ref|ZP_20300565.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE153]
gi|433119415|ref|ZP_20305122.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE157]
gi|433124410|ref|ZP_20309997.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE160]
gi|433138470|ref|ZP_20323754.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE167]
gi|433148257|ref|ZP_20333321.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE174]
gi|433182404|ref|ZP_20366699.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE85]
gi|433197475|ref|ZP_20381396.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE94]
gi|433206985|ref|ZP_20390680.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE97]
gi|433211733|ref|ZP_20395346.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE99]
gi|433322305|ref|ZP_20399775.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli J96]
gi|442606418|ref|ZP_21021218.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli Nissle 1917]
gi|26107290|gb|AAN79473.1|AE016758_77 Probable N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
CFT073]
gi|190907604|gb|EDV67199.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli F11]
gi|218426213|emb|CAR07038.1| putative cell wall amidase and lipoprotein [Escherichia coli ED1a]
gi|222032596|emb|CAP75335.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli LF82]
gi|227838921|gb|EEJ49387.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli 83972]
gi|281178002|dbj|BAI54332.1| putative regulator [Escherichia coli SE15]
gi|300297112|gb|EFJ53497.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 185-1]
gi|300305449|gb|EFJ59969.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 200-1]
gi|300406585|gb|EFJ90123.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 45-1]
gi|307552710|gb|ADN45485.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli ABU 83972]
gi|312945384|gb|ADR26211.1| putative cell wall amidase and lipoprotein [Escherichia coli O83:H1
str. NRG 857C]
gi|315292542|gb|EFU51894.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 153-1]
gi|315299384|gb|EFU58636.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 16-3]
gi|323190689|gb|EFZ75958.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli RN587/1]
gi|324009767|gb|EGB78986.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 57-2]
gi|324013029|gb|EGB82248.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 60-1]
gi|331044887|gb|EGI17014.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli M605]
gi|331055188|gb|EGI27197.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli TA206]
gi|333968826|gb|AEG35631.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli NA114]
gi|355419305|gb|AER83502.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli str.
'clone D i2']
gi|355424225|gb|AER88421.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli str.
'clone D i14']
gi|386244070|gb|EII85802.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 3003]
gi|408206057|gb|EKI30876.1| putative N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
ARS4.2123]
gi|430917071|gb|ELC38119.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE25]
gi|430931837|gb|ELC52271.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE28]
gi|430937366|gb|ELC57621.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE39]
gi|430946559|gb|ELC66482.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE178]
gi|430955356|gb|ELC74139.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE187]
gi|430965772|gb|ELC83181.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE188]
gi|430968954|gb|ELC86122.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE189]
gi|430975200|gb|ELC92102.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE191]
gi|430984458|gb|ELD01081.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE201]
gi|430996636|gb|ELD12912.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE205]
gi|430999413|gb|ELD15495.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE206]
gi|431027274|gb|ELD40337.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE214]
gi|431031750|gb|ELD44488.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE216]
gi|431041554|gb|ELD52054.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE220]
gi|431054263|gb|ELD63844.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE230]
gi|431093926|gb|ELD99582.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE49]
gi|431102647|gb|ELE07461.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE53]
gi|431119942|gb|ELE22941.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE57]
gi|431131835|gb|ELE33851.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE60]
gi|431140138|gb|ELE41915.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE67]
gi|431192884|gb|ELE92228.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE87]
gi|431236285|gb|ELF31498.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE162]
gi|431251367|gb|ELF45384.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE6]
gi|431258658|gb|ELF51421.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE8]
gi|431267455|gb|ELF58972.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE17]
gi|431274754|gb|ELF65799.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE18]
gi|431277831|gb|ELF68835.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE45]
gi|431285243|gb|ELF76079.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE23]
gi|431310593|gb|ELF98774.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE46]
gi|431331151|gb|ELG18414.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE63]
gi|431350381|gb|ELG37193.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE84]
gi|431396942|gb|ELG80404.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE141]
gi|431424583|gb|ELH06679.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE165]
gi|431428525|gb|ELH10466.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE192]
gi|431446270|gb|ELH27019.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE173]
gi|431448100|gb|ELH28818.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE175]
gi|431481036|gb|ELH60750.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE209]
gi|431493235|gb|ELH72829.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE211]
gi|431496840|gb|ELH76418.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE217]
gi|431508810|gb|ELH87081.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE218]
gi|431513355|gb|ELH91438.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE223]
gi|431534532|gb|ELI11014.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE104]
gi|431539463|gb|ELI15214.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE106]
gi|431545273|gb|ELI19933.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE109]
gi|431573727|gb|ELI46524.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE124]
gi|431592087|gb|ELI62993.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE129]
gi|431600304|gb|ELI69976.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE131]
gi|431609133|gb|ELI78466.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE137]
gi|431619020|gb|ELI87948.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE139]
gi|431630823|gb|ELI99151.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE150]
gi|431633728|gb|ELJ01991.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE148]
gi|431636461|gb|ELJ04592.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE153]
gi|431648277|gb|ELJ15676.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE157]
gi|431649217|gb|ELJ16576.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE160]
gi|431664648|gb|ELJ31382.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE167]
gi|431676370|gb|ELJ42490.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE174]
gi|431711043|gb|ELJ75405.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE85]
gi|431724549|gb|ELJ88466.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE94]
gi|431732201|gb|ELJ95657.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE97]
gi|431735931|gb|ELJ99275.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE99]
gi|432349023|gb|ELL43464.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli J96]
gi|441712494|emb|CCQ07195.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli Nissle 1917]
Length = 276
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|167840112|ref|ZP_02466796.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis MSMB43]
Length = 341
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 124/235 (52%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + T S+HY++ + EGK +V +
Sbjct: 69 DSR----VRTLVLHYTAQPLARSVALLTDP--TRPVSAHYLVPDAADEGKRF---RVFAL 119
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP++ RAWHAG+ W+ +R LN+ SIGI +VN G + PF + Q+ +
Sbjct: 120 VPESRRAWHAGVSYWQGERLLNAGSIGIEIVNAGFPDADEDAPLMQRRWSPFPDEQMAAV 179
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DIV++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + V
Sbjct: 180 GRLAADIVARHAIPPQKVVGHSDIAPGRKLDPGPLFPWRTLYEQYGVGAW--PDAIAVA- 236
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ T I AF+ HF
Sbjct: 237 ---YYRACRPF-----RGEVAELQAKLLAYGYDTPQTGALDLRTTDAIAAFQMHF 283
>gi|226195711|ref|ZP_03791298.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pakistan 9]
gi|225932196|gb|EEH28196.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pakistan 9]
Length = 456
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI- 68
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 170 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 219
Query: 69 -SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
S +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 220 DSADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 276
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 277 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 336
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 337 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 388
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 389 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 421
>gi|424815789|ref|ZP_18240940.1| cell wall amidase and lipoprotein [Escherichia fergusonii ECD227]
gi|325496809|gb|EGC94668.1| cell wall amidase and lipoprotein [Escherichia fergusonii ECD227]
Length = 276
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGMKYFAPFEPAQIQALIPLAKDIITRYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIG W PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGPW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|421776949|ref|ZP_16213550.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli AD30]
gi|408458063|gb|EKJ81853.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli AD30]
Length = 276
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMIPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|417288620|ref|ZP_12075905.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TW07793]
gi|386247412|gb|EII93585.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli TW07793]
Length = 276
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWKQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VNTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|91209901|ref|YP_539887.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli UTI89]
gi|117623047|ref|YP_851960.1| N-acetylmuramoyl-L-alanine amidase YbjR [Escherichia coli APEC O1]
gi|218557770|ref|YP_002390683.1| cell wall amidase and lipoprotein [Escherichia coli S88]
gi|237707169|ref|ZP_04537650.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia sp. 3_2_53FAA]
gi|386598585|ref|YP_006100091.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli IHE3034]
gi|386605240|ref|YP_006111540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli UM146]
gi|416335101|ref|ZP_11671812.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli WV_060327]
gi|417083362|ref|ZP_11951457.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
cloneA_i1]
gi|419945166|ref|ZP_14461619.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli HM605]
gi|422358891|ref|ZP_16439540.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 110-3]
gi|422748086|ref|ZP_16801999.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H252]
gi|422753473|ref|ZP_16807300.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H263]
gi|422839330|ref|ZP_16887302.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H397]
gi|432357196|ref|ZP_19600440.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE4]
gi|432361623|ref|ZP_19604807.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE5]
gi|432572845|ref|ZP_19809335.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE55]
gi|432587105|ref|ZP_19823475.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE58]
gi|432596746|ref|ZP_19833027.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE62]
gi|432753604|ref|ZP_19988170.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE22]
gi|432777744|ref|ZP_20011994.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE59]
gi|432786532|ref|ZP_20020697.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE65]
gi|432820124|ref|ZP_20053837.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE118]
gi|432826340|ref|ZP_20059995.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE123]
gi|433004332|ref|ZP_20192770.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE227]
gi|433011587|ref|ZP_20199991.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE229]
gi|433152957|ref|ZP_20337923.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE176]
gi|433162702|ref|ZP_20347461.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE179]
gi|433167711|ref|ZP_20352377.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE180]
gi|91071475|gb|ABE06356.1| probable N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
UTI89]
gi|115512171|gb|ABJ00246.1| putative N-acetylmuramoyl-L-alanine amidase YbjR [Escherichia coli
APEC O1]
gi|218364539|emb|CAR02223.1| putative cell wall amidase and lipoprotein [Escherichia coli S88]
gi|226898379|gb|EEH84638.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia sp. 3_2_53FAA]
gi|294490634|gb|ADE89390.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli IHE3034]
gi|307627724|gb|ADN72028.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli UM146]
gi|315287301|gb|EFU46712.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 110-3]
gi|320196638|gb|EFW71261.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli WV_060327]
gi|323953429|gb|EGB49295.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H252]
gi|323958156|gb|EGB53865.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H263]
gi|355352778|gb|EHG01952.1| N-acetylmuramoyl-L-alanine amidase ybjR [Escherichia coli
cloneA_i1]
gi|371609862|gb|EHN98395.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli H397]
gi|388416439|gb|EIL76327.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli HM605]
gi|430879062|gb|ELC02419.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE4]
gi|430889513|gb|ELC12174.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE5]
gi|431110053|gb|ELE13980.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE55]
gi|431123272|gb|ELE26014.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE58]
gi|431132531|gb|ELE34530.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE62]
gi|431304840|gb|ELF93364.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE22]
gi|431329933|gb|ELG17218.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE59]
gi|431341168|gb|ELG28182.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE65]
gi|431370380|gb|ELG56181.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE118]
gi|431374124|gb|ELG59719.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE123]
gi|431517653|gb|ELH95175.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE227]
gi|431518202|gb|ELH95722.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE229]
gi|431678050|gb|ELJ44062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE176]
gi|431691372|gb|ELJ56832.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE179]
gi|431692973|gb|ELJ58394.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE180]
Length = 276
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYY 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWKQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|417661429|ref|ZP_12311010.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli AA86]
gi|330910647|gb|EGH39157.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli AA86]
Length = 276
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGGKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|170020730|ref|YP_001725684.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli ATCC 8739]
gi|188492807|ref|ZP_03000077.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 53638]
gi|194438423|ref|ZP_03070513.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 101-1]
gi|251784409|ref|YP_002998713.1| anhydro-N-acetylmuramoyl-L-alanine amidase [Escherichia coli
BL21(DE3)]
gi|253774103|ref|YP_003036934.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160982|ref|YP_003044090.1| putative amidase and lipoprotein [Escherichia coli B str. REL606]
gi|254287790|ref|YP_003053538.1| amidase [Escherichia coli BL21(DE3)]
gi|297519329|ref|ZP_06937715.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli OP50]
gi|300921101|ref|ZP_07137485.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 115-1]
gi|300929322|ref|ZP_07144796.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 187-1]
gi|312970992|ref|ZP_07785171.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 1827-70]
gi|386613086|ref|YP_006132752.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli UMNK88]
gi|422785459|ref|ZP_16838198.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H489]
gi|425287747|ref|ZP_18678653.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3006]
gi|432533093|ref|ZP_19770084.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE234]
gi|442599388|ref|ZP_21017106.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|169755658|gb|ACA78357.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli ATCC 8739]
gi|188488006|gb|EDU63109.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 53638]
gi|194422647|gb|EDX38644.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 101-1]
gi|242376682|emb|CAQ31395.1| anhydro-N-acetylmuramoyl-L-alanine amidase [Escherichia coli
BL21(DE3)]
gi|253325147|gb|ACT29749.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972883|gb|ACT38554.1| predicted amidase and lipoprotein [Escherichia coli B str. REL606]
gi|253977097|gb|ACT42767.1| predicted amidase and lipoprotein [Escherichia coli BL21(DE3)]
gi|300411952|gb|EFJ95262.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 115-1]
gi|300462741|gb|EFK26234.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 187-1]
gi|310336753|gb|EFQ01920.1| N-acetylmuramoyl-L-alanine amidase amiD [Escherichia coli 1827-70]
gi|323962980|gb|EGB58552.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli H489]
gi|332342255|gb|AEE55589.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli UMNK88]
gi|408216966|gb|EKI41253.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli 3006]
gi|431062814|gb|ELD72074.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE234]
gi|441651658|emb|CCQ02603.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
Length = 276
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V +R VI AF+ HF P + E A
Sbjct: 213 --VDTTSLLELLARYGYDVKPDMIPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|238787057|ref|ZP_04630857.1| N-acetylmuramoyl-L-alanine amidase [Yersinia frederiksenii ATCC
33641]
gi|238724845|gb|EEQ16485.1| N-acetylmuramoyl-L-alanine amidase [Yersinia frederiksenii ATCC
33641]
Length = 284
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 21/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A + T S+HY++ + V+Q+VP++ RAWH
Sbjct: 49 VRFLVLHYTATDDAESLKILTQGEV----SAHYLVKTHPDSFDGKPVVLQLVPESQRAWH 104
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W +LN SIGI +VN G E+ S +YP++E+QI + L KDIV ++ I
Sbjct: 105 AGVSSWHGRSSLNDTSIGIEIVNKGFT-ERMLSREWYPYNESQIKLIERLTKDIVERYNI 163
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+ H+DIAP K DPGPLFPW +L G+GAW PD+ TV K+ R
Sbjct: 164 DPTDVVAHSDIAPLRKSDPGPLFPWKRL-AQLGVGAW--PDDATVT----KYIDGRNKQD 216
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+ + L YGY + + + VI+AF+ HF A D+ TE + A
Sbjct: 217 IASVSVIQQALARYGYQIPQSGELDDETLQVIKAFQMHFRAQDFSG--VPDVETEAI--A 272
Query: 269 WALVAKY 275
ALV KY
Sbjct: 273 LALVEKY 279
>gi|432552862|ref|ZP_19789592.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE47]
gi|431086434|gb|ELD92457.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE47]
Length = 276
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWKQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R +I AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRLIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|395236049|ref|ZP_10414249.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter sp. Ag1]
gi|394729355|gb|EJF29351.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter sp. Ag1]
Length = 276
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 133/252 (52%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
VK L++HYT +F+ ++ T S+HY++ + L GGK V Q+VP+ A
Sbjct: 44 VKILVIHYTADDFSSSLSTLTDRNV----SAHYLVPAEPP--LSGGKPVVWQLVPEEQLA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGV--VGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
WHAG+ WR +N S+GI L N G VG R +YPF + QI L L K I++
Sbjct: 98 WHAGVSFWRGATRINDTSVGIELENQGYTRVGGVQR---FYPFSQPQIAVLEDLAKQIIA 154
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I PQ V+ H DIAP K+DPGPLFPW K + + GIGAW PD V + P +
Sbjct: 155 RYNIAPQNVVAHGDIAPQRKVDPGPLFPW-KQFAEKGIGAW--PDAARVAFYLNGRGPLQ 211
Query: 210 PYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P +D+ L++L YGY V T ++ VI AF+ HF P + E +
Sbjct: 212 P----VDKSELLDVLSRYGYEVLPGMTEAQQKRVITAFQMHF----RPANYSGEADAESL 263
Query: 266 FWAWALVAKYGS 277
A AL+ KYG
Sbjct: 264 AIAEALLEKYGQ 275
>gi|432860614|ref|ZP_20085753.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE146]
gi|431407598|gb|ELG90809.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE146]
Length = 276
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 127/250 (50%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V F A P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRV-----NFYLAGRAP 209
Query: 213 RKL-DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
L D LELL YGY+V T +R VI AF+ HF P + E
Sbjct: 210 HTLVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|420258702|ref|ZP_14761432.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404513886|gb|EKA27691.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 283
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 133/247 (53%), Gaps = 21/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A + T S+HY++ V+Q+VP++ RAWH
Sbjct: 48 VRFLVLHYTATDDAESLRLLTQGDV----SAHYLVKTHPESLNGKPVVLQLVPESQRAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ +LN SIGI +VN G E+ +YP++E+QI + L KDIV ++ I
Sbjct: 104 AGVSYWQGRNSLNDTSIGIEIVNRGFT-ERMLRREWYPYNESQIELIERLTKDIVERYNI 162
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+ H+DIAP K DPGPLFPW +L GIGAW PD+ TV K+ R
Sbjct: 163 EPANVVAHSDIAPLRKSDPGPLFPWKRLATQ-GIGAW--PDDATVT----KYIAERNKHD 215
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
I + L YGY + + R VI+AF+ HF A Q+ I D+ TE + A
Sbjct: 216 MASVSIIQQTLARYGYQIPQNGELDDETRQVIKAFQMHFRA-QDFSGI-PDVETEAI--A 271
Query: 269 WALVAKY 275
ALV KY
Sbjct: 272 LALVEKY 278
>gi|383814743|ref|ZP_09970162.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. M24T3]
gi|383296520|gb|EIC84835.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. M24T3]
Length = 281
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY+I + Q+VP+++RAWH
Sbjct: 49 IRFLVIHYTAEDFHTALNTLTDEHV----SAHYLIPARPPLVHGQPVAWQLVPESLRAWH 104
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W+ NLN SIGI L N G + +YPF + QI L L +DIV +++I
Sbjct: 105 AGASEWQGRNNLNDTSIGIELENKGYT-RRMLEQRFYPFPKAQITLLTSLSQDIVKRYQI 163
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
KPQ V+ H DIAP K DPGPLFPW +L + G+GAW P V+ ++ P +P P
Sbjct: 164 KPQDVVAHGDIAPQRKEDPGPLFPWQQL-AENGVGAW--PQASRVKTLLHGRDPQQPVPI 220
Query: 214 KLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
+ L L YGY N+T +R V+ AF+ HF Q+ R AD +E +
Sbjct: 221 EE----LLSKLARYGYPVSTNMTPQQQRRVVAAFQMHF--RQSDYRGNADAESEAI--VE 272
Query: 270 ALVAKYGS 277
AL+ +Y S
Sbjct: 273 ALLEQYPS 280
>gi|254263452|ref|ZP_04954317.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1710a]
gi|254214454|gb|EET03839.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1710a]
Length = 449
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 163 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 212
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 213 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 269
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 270 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 329
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 330 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 381
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 382 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 414
>gi|76817278|ref|YP_336084.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1710b]
gi|76581751|gb|ABA51225.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 1710b]
Length = 454
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 168 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 217
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 218 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 274
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 275 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 334
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 335 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 386
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 387 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 419
>gi|170770043|ref|ZP_02904496.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia albertii
TW07627]
gi|170121109|gb|EDS90040.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia albertii
TW07627]
Length = 276
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AG+ WR +N SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGVSAWRGATRINDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDASRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY N+T ++ VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPNMTPHEQKRVIMAFQMHF----RPALYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 QALLEKYGQ 275
>gi|407893692|ref|ZP_11152722.1| anhydro-N-acetylmuramyl-tripeptide amidase [Diplorickettsia
massiliensis 20B]
Length = 233
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 22/195 (11%)
Query: 60 NLHSSHYVISEKEGKYLPGG-KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG 118
N S+HY+I E + + G K+ Q+V +N RAWHAG+ W + +N+N SIGI +VN G
Sbjct: 8 NRFSAHYLIPETD---IDGQRKIFQLVKENERAWHAGVSSWGKRKNINDTSIGIEIVNLG 64
Query: 119 VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPW 178
E+ + T +YPF + QI T+ L KDIV ++ I+P ++GH+DIAPG K+DPGPLFPW
Sbjct: 65 YKEEEGKRT-WYPFSDYQIQTVMKLAKDIVRRYDIQPVNIIGHSDIAPGRKVDPGPLFPW 123
Query: 179 GKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT---- 234
KLY D GIGAW + + ++ ++D LK YGY + +T
Sbjct: 124 KKLY-DNGIGAWFNEQALEIKE-----------QEEIDIQRLQRNLKTYGYTIEVTGTLD 171
Query: 235 -NKRSVIRAFKTHFS 248
R+ ++AF+ HF+
Sbjct: 172 QQTRTTLQAFQMHFN 186
>gi|254186056|ref|ZP_04892574.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pasteur 52237]
gi|157933742|gb|EDO89412.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pasteur 52237]
Length = 346
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI- 68
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 60 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 109
Query: 69 -SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
S +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 110 DSADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 166
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 167 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 226
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 227 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 278
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 279 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 311
>gi|416815499|ref|ZP_11891935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. 3256-97]
gi|419119427|ref|ZP_13664405.1| amidase and lipoprotein [Escherichia coli DEC5B]
gi|320654156|gb|EFX22224.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|377971070|gb|EHV34427.1| amidase and lipoprotein [Escherichia coli DEC5B]
Length = 276
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ F+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFASFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|429103764|ref|ZP_19165738.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter turicensis 564]
gi|426290413|emb|CCJ91851.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter turicensis 564]
Length = 244
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+K L++HYT +F + T R SSHY+I +K GK + + Q+VP+
Sbjct: 12 IKVLVIHYTADDFDTSLATLTDRRV----SSHYLIPANPPQKSGKPV----IWQLVPERE 63
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKD 146
AWHAG+ WR LN S+GI L N G + G+K Y+PF QI L L +D
Sbjct: 64 LAWHAGVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSLPQIAVLSHLARD 119
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I+ +++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V +
Sbjct: 120 IIRRYQIAPQNVVAHADIAPQRKDDPGPLFPWRALAAQ-GIGAW--PDEQRVAFYLAGRN 176
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITT 262
P P +D L+LL YGY VT T ++ VI+AF+ HF P R
Sbjct: 177 PYTP----VDETTLLDLLARYGYEVTPQMSETQRKRVIQAFQMHF----RPARYDGLPDA 228
Query: 263 EDMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 229 QSEAIAEALLEKYGQ 243
>gi|254301113|ref|ZP_04968557.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 406e]
gi|157810967|gb|EDO88137.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 406e]
Length = 344
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI- 68
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 107
Query: 69 -SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
S +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DSADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 164
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 165 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 224
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 225 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 276
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 277 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|217422602|ref|ZP_03454105.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 576]
gi|217394833|gb|EEC34852.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 576]
Length = 439
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 153 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 202
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 203 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 259
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 260 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 319
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 320 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 371
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 372 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 404
>gi|417832000|ref|ZP_12478520.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 01-09591]
gi|340735290|gb|EGR64348.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O104:H4
str. 01-09591]
Length = 276
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+V + AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVSEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|429108143|ref|ZP_19170012.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter malonaticus 681]
gi|426294866|emb|CCJ96125.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter malonaticus 681]
Length = 241
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 128/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+IS + GGK + Q+VP+ A
Sbjct: 9 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLISANPPQK--GGKPVIWQLVPERELA 62
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAG+ WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 63 WHAGVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDII 118
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 119 QRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPY 175
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 176 AP----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQS 227
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 228 EAIARALLEKYGQ 240
>gi|345298526|ref|YP_004827884.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Enterobacter asburiae LF7a]
gi|345092463|gb|AEN64099.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Enterobacter asburiae LF7a]
Length = 276
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I + P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPARPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR +N S+GI L N G G+K + PF+ QI L L KDI+
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRGWKKTGGDK----TFTPFEPAQIAALIPLAKDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ IKP+ V+ H+DIAP K DPGPLFPW +L GIGAW PD V + P+
Sbjct: 154 ARYHIKPENVVAHSDIAPQRKDDPGPLFPWREL-AQQGIGAW--PDPARVAFYINGRPPS 210
Query: 209 RPYPRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTED 264
+P ++ + L+LL YGY N+T ++ VI F+ HF P+R E
Sbjct: 211 QP----VETAVLLDLLARYGYDVPENITQAQQKRVITVFQMHF----RPQRWDGVADIET 262
Query: 265 MFWAWALVAKYGS 277
M A AL+ KYG
Sbjct: 263 MAIAEALLEKYGQ 275
>gi|300947041|ref|ZP_07161263.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 116-1]
gi|300453324|gb|EFK16944.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli MS 116-1]
Length = 276
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ F P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMAF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|167829204|ref|ZP_02460675.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 9]
gi|167915951|ref|ZP_02503042.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 112]
gi|237509100|ref|ZP_04521815.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei MSHR346]
gi|254184833|ref|ZP_04891422.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1655]
gi|403523735|ref|YP_006659304.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
BPC006]
gi|418544188|ref|ZP_13109498.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|418551029|ref|ZP_13115974.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
gi|184215425|gb|EDU12406.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1655]
gi|235001305|gb|EEP50729.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei MSHR346]
gi|385349959|gb|EIF56513.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
gi|385350510|gb|EIF57044.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|403078802|gb|AFR20381.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei BPC006]
Length = 344
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI- 68
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 107
Query: 69 -SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
S +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DSADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 164
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 165 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 224
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 225 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 276
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 277 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|126458017|ref|YP_001076523.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106a]
gi|167850675|ref|ZP_02476183.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei B7210]
gi|242313732|ref|ZP_04812749.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106b]
gi|126231785|gb|ABN95198.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106a]
gi|242136971|gb|EES23374.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106b]
Length = 344
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI- 68
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 107
Query: 69 -SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
S +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DSADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 164
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 165 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 224
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 225 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 276
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 277 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|259908388|ref|YP_002648744.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Erwinia pyrifoliae Ep1/96]
gi|387871244|ref|YP_005802617.1| N-acetylmuramoyl-L-alanine amidase [Erwinia pyrifoliae DSM 12163]
gi|224964010|emb|CAX55515.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Erwinia pyrifoliae Ep1/96]
gi|283478330|emb|CAY74246.1| probable N-acetylmuramoyl-L-alanine amidase [Erwinia pyrifoliae DSM
12163]
Length = 289
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 131/264 (49%), Gaps = 21/264 (7%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P ++ N H + V++L+LHYT + A + T S+HY++ +
Sbjct: 27 PGYQLNSEHPSASQNERVRFLVLHYTAADDAESLRLLTQGGV----SAHYLVPSAADPLM 82
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
V Q+VP++ RAWHAG+ W NLN +IGI +V+ G + + ++YP+D Q
Sbjct: 83 KQRTVYQLVPEDKRAWHAGVSNWNGCSNLNDSAIGIEIVHPGFI-DNSSGRHWYPWDAQQ 141
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
+ + L +D++ ++ I P V+ H+DIAPG K DPGPLFPW +L + GIGAW PD
Sbjct: 142 VRLVASLAQDVIQRYAITPDNVVAHSDIAPGRKFDPGPLFPWQQL-AEQGIGAW--PDSS 198
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
TV+ R Y R I + L +YGY + T R I AF+ HF
Sbjct: 199 TVQ---RYLAGRSHYAAGSVRKIQTD-LASYGYTIPQTGINDEKTRKAIAAFQMHF---- 250
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P E A ALVAKY
Sbjct: 251 RPTNFSGVADAETEAIAAALVAKY 274
>gi|238791742|ref|ZP_04635379.1| N-acetylmuramoyl-L-alanine amidase [Yersinia intermedia ATCC 29909]
gi|238728846|gb|EEQ20363.1| N-acetylmuramoyl-L-alanine amidase [Yersinia intermedia ATCC 29909]
Length = 284
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 31/268 (11%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E++ + N+ V++L+LHYT + A + T S+HY++
Sbjct: 33 EYKIDTNNPSVAQNERVRFLVLHYTATDDAESLRILTQGDV----SAHYLVKTHPENV-- 86
Query: 78 GGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
GGK V+Q+VP++ RAWHAG+ W +LN SIGI +VN G E+ +YP++E+
Sbjct: 87 GGKPVVLQLVPESQRAWHAGVSYWEGRTSLNDTSIGIEIVNKGFT-ERMLGRKWYPYNES 145
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
QI + L +DIV ++ I P V+ H+DIAP K DPGPLFPW +L + GIGAW PD+
Sbjct: 146 QIELIERLSRDIVERYNIAPMNVVAHSDIAPQRKSDPGPLFPWKRL-AEQGIGAW--PDD 202
Query: 196 MTVEAIVRKFKPARPYPRKLDRG---IFLELLKAYGYNV----TITNKR-SVIRAFKTHF 247
TV K+ R K D G + + L YGY + + N+ VI+AF+ HF
Sbjct: 203 ATVA----KYINGR---NKYDIGSVTVIQQALARYGYQIPQNGVLDNETIQVIKAFQMHF 255
Query: 248 SANQNPERIYADITTEDMFWAWALVAKY 275
A QN R DI TE + A ALV KY
Sbjct: 256 RA-QNI-RGVPDIETEAI--ALALVEKY 279
>gi|332161579|ref|YP_004298156.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386308188|ref|YP_006004244.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243049|ref|ZP_12869545.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549767|ref|ZP_20505811.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica IP
10393]
gi|318605938|emb|CBY27436.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665809|gb|ADZ42453.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859794|emb|CBX70127.1| N-acetylmuramoyl-L-alanine amidase amiD [Yersinia enterocolitica
W22703]
gi|351777529|gb|EHB19737.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431788902|emb|CCO68851.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica IP
10393]
Length = 283
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 133/247 (53%), Gaps = 21/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A + T S+HY++ V+Q+VP++ RAWH
Sbjct: 48 VRFLVLHYTATDDAESLRLLTQGDV----SAHYLVKTYPESLNGKPVVLQLVPESQRAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ NLN SIGI +VN G E+ +Y ++E+QI + L KDIV ++ I
Sbjct: 104 AGVSYWQGRNNLNDTSIGIEIVNRGFT-ERMLRREWYAYNESQIELIERLTKDIVERYNI 162
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+ H+DIAP K DPGPLFPW +L + GIGAW PD+ TV K+ R
Sbjct: 163 DPANVVAHSDIAPLRKSDPGPLFPWKRL-AEQGIGAW--PDDATVN----KYINGRNMSG 215
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
I + L YGY + + + + VI+AF+ HF A QN I D+ TE + A
Sbjct: 216 MASVTIIQQALARYGYQIPQSGELDNETKQVIKAFQMHFRA-QNFSGI-PDVETEAI--A 271
Query: 269 WALVAKY 275
ALV KY
Sbjct: 272 LALVEKY 278
>gi|424906578|ref|ZP_18330075.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia thailandensis
MSMB43]
gi|390927984|gb|EIP85390.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia thailandensis
MSMB43]
Length = 270
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 121/228 (53%), Gaps = 30/228 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQIVPDNMRA 91
++ L+LHYT A + T S+HY++ + EGK +V +VP++ RA
Sbjct: 1 MRTLVLHYTAQPLARSVALLTDP--TRPVSAHYLVPDAADEGKRF---RVFALVPESRRA 55
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTLGLLGKDI 147
WHAG+ W+ +R LN+ SIGI +VN G + PF + Q+ +G L DI
Sbjct: 56 WHAGVSYWQGERLLNAGSIGIEIVNAGFPDADEDAPLMQRRWSPFPDEQMAAVGRLAADI 115
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + V ++
Sbjct: 116 VARHAIPPQKVVGHSDIAPGRKLDPGPLFPWRTLYEQYGVGAW--PDAIAVA----YYRA 169
Query: 208 ARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
RP+ RG EL L AYGY+ T I AF+ HF
Sbjct: 170 CRPF-----RGEVAELQAKLLAYGYDTPQTGALDLRTTDAIAAFQMHF 212
>gi|419864894|ref|ZP_14387289.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O103:H25
str. CVM9340]
gi|388338585|gb|EIL05033.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli O103:H25
str. CVM9340]
Length = 276
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGA PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGA--RPDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|145300357|ref|YP_001143198.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362265|ref|ZP_12962904.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853129|gb|ABO91450.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686527|gb|EHI51125.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 273
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 23/224 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS-EKEGKYLPGGKVIQIVPDNMRAW 92
+ +LILHYT + AH + T AH + S+HY+I + + LP V Q+VPD+ RAW
Sbjct: 37 IAFLILHYTDEDDAHSLRLLTEP-AHQV-SAHYLIPRDTDQTPLP---VYQLVPDSQRAW 91
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF----RSTNYYPFDENQIHTLGLLGKDIV 148
HAG +W + LN+ SIGI +VN G E + P+ + QI +G L + +V
Sbjct: 92 HAGRSRWHQYAGLNASSIGIEIVNLGYPPEDALLPAHQRRWQPYTQAQIAAIGALTQKLV 151
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I P VL H+D+AP K DPGP FPW +L L YG+GAW PDE V A+ ++ PA
Sbjct: 152 QRYRIPPTQVLAHSDVAPERKQDPGPHFPWRELALHYGVGAW--PDEARVTALRQQPAPA 209
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
+ + + L YGY V +++ R+ +RAF+ HF
Sbjct: 210 ------WNALTWQQQLARYGYGVALSSTWDEQSRAALRAFQLHF 247
>gi|386865654|ref|YP_006278602.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
gi|418536876|ref|ZP_13102544.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|385351395|gb|EIF57865.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|385662782|gb|AFI70204.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
Length = 342
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 56 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 105
Query: 70 E--KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 106 DLADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 162
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 163 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 222
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 223 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 274
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 275 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 307
>gi|448241426|ref|YP_007405479.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent
[Serratia marcescens WW4]
gi|445211790|gb|AGE17460.1| 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent
[Serratia marcescens WW4]
Length = 278
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + V ++VP+ MRAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPQREHGKPTVYRLVPEAMRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR NLN SIGI +VN G T++ P+ QI L L +DI+ ++ I
Sbjct: 101 AGASAWRGRSNLNDTSIGIEIVNKGFT-RSMLFTHWQPYTAEQIAVLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+PQ V+GH+DIAP K DPGPLFPW +L GIGAW PDE V+ ++ P P
Sbjct: 160 QPQDVVGHSDIAPQRKQDPGPLFPWRQL-AQAGIGAW--PDEADVQRLLAGRDRHAPVP- 215
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
L+ L YGY V + +R+V+ AF+ HF P+ + + E
Sbjct: 216 ---LAPLLDKLARYGYAVDSSWDARQQRNVLAAFQMHF----RPDDVRGEPDAESEAIID 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLLKYGA 276
>gi|121597014|ref|YP_991043.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei SAVP1]
gi|124382671|ref|YP_001025444.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei NCTC 10229]
gi|126446700|ref|YP_001077504.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia mallei NCTC 10247]
gi|167002888|ref|ZP_02268678.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
PRL-20]
gi|238561479|ref|ZP_00441911.2| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
GB8 horse 4]
gi|254177206|ref|ZP_04883862.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
gi|254203018|ref|ZP_04909380.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
FMH]
gi|254208350|ref|ZP_04914699.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
JHU]
gi|121224812|gb|ABM48343.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei SAVP1]
gi|126239554|gb|ABO02666.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10247]
gi|147746063|gb|EDK53141.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
FMH]
gi|147751037|gb|EDK58105.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
JHU]
gi|160698246|gb|EDP88216.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
gi|238524434|gb|EEP87867.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
GB8 horse 4]
gi|243061506|gb|EES43692.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
PRL-20]
gi|261826922|gb|ABN00257.2| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10229]
Length = 346
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 60 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 109
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 110 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 166
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 167 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 226
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 227 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 278
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 279 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 311
>gi|432615698|ref|ZP_19851825.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE75]
gi|431156873|gb|ELE57539.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE75]
Length = 276
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 127/250 (50%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF++ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSSGVKYFAPFEQAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IK + V+ H DIAP K DPGPLFPW +L GIGAW PD V F A P
Sbjct: 158 IKSENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRV-----NFYLAGRAP 209
Query: 213 RKL-DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
L D LELL YGY+V T +R VI AF+ HF P + E
Sbjct: 210 HTLVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|53716703|ref|YP_105082.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei ATCC 23344]
gi|52422673|gb|AAU46243.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 23344]
Length = 317
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 136/277 (49%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 31 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 80
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 81 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 137
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 138 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 197
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW + + + R F D L AYGY+ T +
Sbjct: 198 QYKIGAWPEAEAVDYYRVNRPF--------AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 249
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 250 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 282
>gi|123442158|ref|YP_001006139.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089119|emb|CAL11957.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 283
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 133/247 (53%), Gaps = 21/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A + T S+HY++ V+Q+VP++ RAWH
Sbjct: 48 VRFLVLHYTATDDAESLRLLTQGDV----SAHYLVKTHPESLNGKPVVLQLVPESQRAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ +LN SIGI +VN G E+ +YP++E+QI + L KDIV ++ I
Sbjct: 104 AGVSYWQGRNSLNDTSIGIEIVNRGFT-ERMLRREWYPYNESQIELIERLTKDIVERYNI 162
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+ H+DIAP K DPGPLFPW +L GIGAW PD+ TV K+ R
Sbjct: 163 EPANVVAHSDIAPLRKSDPGPLFPWKRLATQ-GIGAW--PDDATVT----KYIAERNKHD 215
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
I + L YGY + + R VI+AF+ HF + Q+ I D+ TE + A
Sbjct: 216 MASVSIIQQTLARYGYQIPQNGELDDETRQVIKAFQMHFRS-QDFSGI-PDVETEAI--A 271
Query: 269 WALVAKY 275
ALV KY
Sbjct: 272 LALVEKY 278
>gi|53722859|ref|YP_111844.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
K96243]
gi|134278546|ref|ZP_01765260.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 305]
gi|167724707|ref|ZP_02407943.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei DM98]
gi|167743659|ref|ZP_02416433.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 14]
gi|167820846|ref|ZP_02452526.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 91]
gi|167899274|ref|ZP_02486675.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 7894]
gi|167907611|ref|ZP_02494816.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei NCTC
13177]
gi|167923792|ref|ZP_02510883.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
BCC215]
gi|254194392|ref|ZP_04900824.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei S13]
gi|418397108|ref|ZP_12970852.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
gi|418556695|ref|ZP_13121318.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|52213273|emb|CAH39316.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei K96243]
gi|134250330|gb|EBA50410.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 305]
gi|169651143|gb|EDS83836.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei S13]
gi|385366674|gb|EIF72279.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|385369509|gb|EIF74836.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
Length = 344
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 107
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DAADDGRRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 164
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 165 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 224
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 225 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 276
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 277 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|397657024|ref|YP_006497726.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella oxytoca E718]
gi|394345536|gb|AFN31657.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella oxytoca E718]
Length = 276
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYEPVDAAALLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|375259944|ref|YP_005019114.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca KCTC
1686]
gi|365909422|gb|AEX04875.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca KCTC
1686]
Length = 276
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYEPVDAAALLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|126443690|ref|YP_001063623.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 668]
gi|126223181|gb|ABN86686.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 668]
Length = 344
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + S+HY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SAHYLVP 107
Query: 70 EK--EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK---- 123
+ +G+ KV ++VP RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DAADDGQRF---KVFELVPQARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLP 164
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+ +YP+ + Q+ G L D+V+Q ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 165 LMNRRWYPYPDAQVAVFGALAADVVAQHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYD 224
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T +
Sbjct: 225 QYKIGAW--PEAEAVD----YYRVNRPF--AGDVASLQSKLLAYGYDTPQTGTLDAQTVN 276
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
V+ AF+ HF P R E + AL+ KY
Sbjct: 277 VVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|229525414|ref|ZP_04414819.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae bv. albensis
VL426]
gi|422924129|ref|ZP_16957230.1| N-acetylmuramoyl-L-alanine amidase family protein [Vibrio cholerae
BJG-01]
gi|429884981|ref|ZP_19366586.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae PS15]
gi|229338995|gb|EEO04012.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae bv. albensis
VL426]
gi|341642409|gb|EGS66797.1| N-acetylmuramoyl-L-alanine amidase family protein [Vibrio cholerae
BJG-01]
gi|429228313|gb|EKY34241.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae PS15]
Length = 254
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 139/270 (51%), Gaps = 38/270 (14%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + ++LI HYT NF+ + A TSN S+HY+I + + Y+ G
Sbjct: 7 NSYRSISGFNQRTRFLIFHYTALNFSESVKALTSNAV----SAHYLIPDPTDATYIDSGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPF 132
++ +V +N RAWHAG+ W NLN S+GI LVN R N + P+
Sbjct: 63 KDLRIFNLVNENDRAWHAGVSAWSGRSNLNDTSLGIELVNQA------RDDNGIITFLPY 116
Query: 133 DENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWL 191
QI L LL +I+ ++ I P ++GH+D++PG K DPG LFPW +L+L G+GAW
Sbjct: 117 HPQQIAALKLLAINILQRYPDISPTNIIGHSDVSPGRKSDPGALFPWKELHLS-GVGAWY 175
Query: 192 SPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV----IRAFKTHF 247
DE + ++FK P ++ LE LK YGY+ T V IR+F+ HF
Sbjct: 176 --DEESKIKYCKQFKKNLP-----NKNDILEKLKTYGYDTTKAEDNQVYQQLIRSFQLHF 228
Query: 248 SANQNPERIYADITTEDMFWAWALVAKYGS 277
PE ++ E + ++LV KY S
Sbjct: 229 ----RPENYSGNVDVETVAILYSLVDKYKS 254
>gi|423102213|ref|ZP_17089915.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5242]
gi|376390109|gb|EHT02796.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5242]
Length = 276
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYESVDAAALLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|261821250|ref|YP_003259356.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pectobacterium wasabiae WPP163]
gi|261605263|gb|ACX87749.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pectobacterium wasabiae WPP163]
Length = 287
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 138/285 (48%), Gaps = 36/285 (12%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
+PSS+ YV+ E +SR +++L++HYT +FA + T
Sbjct: 30 LPSSLQEQNNYVL----ETALQSRAQESR----IRFLVIHYTAEDFATSLNILTDEHV-- 79
Query: 61 LHSSHYVISE----KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN 116
S+HY+I + GK L Q+VP++ AWHAG WR LN SIGI + N
Sbjct: 80 --SAHYLIPAHPPLQHGKPL----AWQLVPESQAAWHAGASSWRGFSRLNHSSIGIEIEN 133
Query: 117 GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLF 176
G + PF +QI + L DIV +++I PQ V+ H+DIAP K DPGPLF
Sbjct: 134 AGY-QRTLTGYTWAPFTASQIQLVTALAHDIVERYQIAPQNVVAHSDIAPQRKQDPGPLF 192
Query: 177 PWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----T 232
PW ++ G+GAW PD V + P +P +D I LE L YGY+V T
Sbjct: 193 PW-QMLAQAGVGAW--PDVHRVTFYLNGRPPMQP----VDEAILLEKLGRYGYSVPETMT 245
Query: 233 ITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
KR VI AF+ HF P+ + A AL+ KYGS
Sbjct: 246 AREKRQVIAAFQMHF----RPDNYQGQPDAQSEAIADALLEKYGS 286
>gi|385871485|gb|AFI90005.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pectobacterium sp.
SCC3193]
Length = 276
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 138/285 (48%), Gaps = 36/285 (12%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
+PSS+ YV+ E +SR +++L++HYT +FA + T
Sbjct: 19 LPSSLQEQNNYVL----ETALQSRAQESR----IRFLVIHYTAEDFATSLNILTDEHV-- 68
Query: 61 LHSSHYVISE----KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN 116
S+HY+I + GK L Q+VP++ AWHAG WR LN SIGI + N
Sbjct: 69 --SAHYLIPAHPPLQHGKPL----AWQLVPESQAAWHAGASSWRGFSRLNHSSIGIEIEN 122
Query: 117 GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLF 176
G + PF +QI + L DIV +++I PQ V+ H+DIAP K DPGPLF
Sbjct: 123 AGY-QRTLTGYTWAPFTASQIQLVTALAHDIVERYQIAPQNVVAHSDIAPQRKQDPGPLF 181
Query: 177 PWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----T 232
PW ++ G+GAW PD V + P +P +D I LE L YGY+V T
Sbjct: 182 PW-QMLAQAGVGAW--PDVHRVTFYLNGRPPMQP----VDEAILLEKLGRYGYSVPETMT 234
Query: 233 ITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
KR VI AF+ HF P+ + A AL+ KYGS
Sbjct: 235 AREKRQVIAAFQMHF----RPDNYQGQPDAQSEAIADALLEKYGS 275
>gi|423199764|ref|ZP_17186346.1| hypothetical protein HMPREF1171_04378 [Aeromonas hydrophila SSU]
gi|404628842|gb|EKB25613.1| hypothetical protein HMPREF1171_04378 [Aeromonas hydrophila SSU]
Length = 299
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 138/264 (52%), Gaps = 27/264 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGGK 80
N +H + + +LILHYT + + T AH + S+HY+I + + + LP
Sbjct: 48 NNDHQSASQNERIAFLILHYTDEDDERSLRLLTEP-AHQV-SAHYLIPRDTDERPLP--- 102
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQ 136
V Q+VPD+ RAWHAG +W + LN+ S+GI +VN G + + P+ + Q
Sbjct: 103 VYQLVPDSRRAWHAGRSRWHQYTGLNASSLGIEIVNLGYPPQDELLPAHQRRWQPYTQAQ 162
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I LG L +++V +++I P VL H+D+AP K DPGP FPW +L L YG+GAW PDE
Sbjct: 163 IAALGALTRELVERYQIPPTQVLAHSDVAPERKQDPGPHFPWRELALHYGVGAW--PDET 220
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
+ + ++ PA D + + L YGY VT + R+ +RAF+ HF
Sbjct: 221 RLAELRQQPAPA------WDALGWQQRLARYGYGVTPSGHWDEQSRAALRAFQLHF---- 270
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
PE + + E AL+ +Y
Sbjct: 271 RPELVSGEADGESQAILTALLERY 294
>gi|317047532|ref|YP_004115180.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pantoea sp. At-9b]
gi|316949149|gb|ADU68624.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pantoea sp. At-9b]
Length = 278
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S+I PGY +D +H +K +++HYT + + T
Sbjct: 22 SAIEARPGYWVD--------TSHPAQGARPRIKVVVIHYTAEDLPSSLATLTDREV---- 69
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I + + G + Q+VP+ AWHAG WR +N S+GI LVN G
Sbjct: 70 SAHYLIPAQPAQRSGNGVIWQLVPERELAWHAGPSFWRGATRINDTSVGIELVNSGY-QR 128
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI L L KDI ++ I P+ V+GH+DIAP K DPGPLFPW +L
Sbjct: 129 TLTGLRWQPFSPAQITVLEALVKDITQRYGIPPENVVGHSDIAPQRKQDPGPLFPWQQLA 188
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN----KRS 238
G+GAW A V+++ + +D+ L+ L+ YGY+VT +R
Sbjct: 189 -QQGLGAW------PATATVQRYLGDQASDAPVDQAELLDALQRYGYDVTAATTPLMQRK 241
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
VI AF+ HF P E + A AL+AKYG+
Sbjct: 242 VIAAFQMHF----RPRDYRGLADAETLAIARALLAKYGA 276
>gi|419911716|ref|ZP_14430185.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KD1]
gi|388393026|gb|EIL54420.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KD1]
Length = 276
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWKQL-AQQGIGAW--PDAQRVNFYLAGRAPH---- 210
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 211 TSVNTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|110641068|ref|YP_668798.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli 536]
gi|110342660|gb|ABG68897.1| putative N-acetylmuramoyl-L-alanine amidase [Escherichia coli 536]
Length = 276
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 126/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ F+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFASFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|297581170|ref|ZP_06943094.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae RC385]
gi|297534486|gb|EFH73323.1| N-acetylmuramoyl-L-alanine amidase [Vibrio cholerae RC385]
Length = 254
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 139/270 (51%), Gaps = 38/270 (14%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + ++LI HYT NF+ + A TSN S+HY+I + + Y+ G
Sbjct: 7 NSYRSISGFNQRTRFLIFHYTALNFSESVKALTSNAV----SAHYLIPDPTDATYIDSGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPF 132
++ +V +N RAWHAG+ W NLN S+GI LVN R N + P+
Sbjct: 63 KDLRIFNLVNENDRAWHAGVSAWSGRSNLNDTSLGIELVNQA------RDDNGIITFLPY 116
Query: 133 DENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWL 191
QI L LL +I+ ++ I P ++GH+D++PG K DPG LFPW +L+L G+GAW
Sbjct: 117 HPQQIAALKLLAINILQRYPDISPTNIIGHSDVSPGRKSDPGALFPWKELHLS-GVGAWY 175
Query: 192 SPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV----IRAFKTHF 247
DE + ++FK P ++ LE LK YGY+ T V IR+F+ HF
Sbjct: 176 --DEESKIKYCKQFKKNPP-----NKNDILEKLKTYGYDTTKAEDNQVYQQLIRSFQLHF 228
Query: 248 SANQNPERIYADITTEDMFWAWALVAKYGS 277
PE ++ E + ++LV KY S
Sbjct: 229 ----RPENYSGNVDVETVAILYSLVDKYKS 254
>gi|402842552|ref|ZP_10890964.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. OBRC7]
gi|402279494|gb|EJU28279.1| N-acetylmuramoyl-L-alanine amidase [Klebsiella sp. OBRC7]
Length = 276
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYEPVDAAALLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|85058760|ref|YP_454462.1| N-acetylmuramoyl-L-alanine amidase [Sodalis glossinidius str.
'morsitans']
gi|84779280|dbj|BAE74057.1| putative N-acetylmuramoyl-L-alanine amidase [Sodalis glossinidius
str. 'morsitans']
Length = 284
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 139/273 (50%), Gaps = 31/273 (11%)
Query: 11 YVID-PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
Y +D FP E++ V++LI HYT + + T H S+HY+I
Sbjct: 35 YAVDTSFPSQEQDER---------VRFLIFHYTAADDKESLRLLT----HGSVSAHYLIP 81
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
G++ V+Q+VP+N RAWHAG+ W N+N SIGI +VN G E +
Sbjct: 82 SNPGQFNGKPVVLQLVPENKRAWHAGVSGWAGRNNINDTSIGIEIVNDG-FHESAAGRQW 140
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
P+ + QI L +DI+++++IKPQ VL H+DIAP K DPGP FPW + GIGA
Sbjct: 141 IPYHKEQIVLAARLARDIMARYQIKPQNVLAHSDIAPLRKTDPGPQFPWQAM-AQQGIGA 199
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W PD TV K+ + + + + L AYGY + T K + VI AF+
Sbjct: 200 W--PDAATVT----KYLQGKHRWSAGNVAVIQQALAAYGYTIPQTGKMDPETQRVISAFQ 253
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF ++ AD+ TE + A ALV KY +
Sbjct: 254 MHFRSSNITG--VADMETEAI--ARALVEKYCT 282
>gi|398791254|ref|ZP_10551999.1| negative regulator of beta-lactamase expression [Pantoea sp. YR343]
gi|398215308|gb|EJN01871.1| negative regulator of beta-lactamase expression [Pantoea sp. YR343]
Length = 274
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 36/283 (12%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
SSI GY +D + R +K +++HYT +F+ + T
Sbjct: 18 SSIEARHGYWVDTAHPAQGARPR--------IKVVVIHYTAEDFSSSLATLTDRDV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I + + G V Q+VP++ AWHAG WR +N SIGI +VN G
Sbjct: 66 SAHYLIPQHPPQKNGKGVVWQLVPESQLAWHAGQSFWRGATRINDTSIGIEIVNSG---- 121
Query: 123 KFRST----NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPW 178
+R T + PF QI L + +DI ++ I P+ V+GH+DIAP K DPGPLFPW
Sbjct: 122 -YRRTLTGLQWQPFTPQQISALMAMVEDITQRYGIAPENVVGHSDIAPQRKQDPGPLFPW 180
Query: 179 GKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN--- 235
+L + G+GAW P++ TV+ ++ R +D+ L+ L+ YGY+V
Sbjct: 181 QQL-AEQGLGAW--PEQATVQ----RYLNGRAADEGVDQAALLDALQRYGYDVAAATTPQ 233
Query: 236 -KRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+R +I AF+ HF P E + A AL+AKYG+
Sbjct: 234 MQRKLIAAFQMHF----RPRDYRGIADAETLAIARALLAKYGA 272
>gi|423205363|ref|ZP_17191919.1| hypothetical protein HMPREF1168_01554 [Aeromonas veronii AMC34]
gi|404624158|gb|EKB20998.1| hypothetical protein HMPREF1168_01554 [Aeromonas veronii AMC34]
Length = 295
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 128/227 (56%), Gaps = 21/227 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ +LILHYT + A+ + T H + S+HY+I K V Q+VPDN RAWH
Sbjct: 59 IAFLILHYTDEDDANSLRLLTEPE-HKV-SAHYLIPRDSHKT--PLTVYQLVPDNARAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF----RSTNYYPFDENQIHTLGLLGKDIVS 149
AG +W + LN+ S+GI +VN G E + + P+ QI +G L +++V+
Sbjct: 115 AGRSRWHQYAGLNASSLGIEIVNLGYPAEDEPLAPDARRWQPYTLQQIAAVGALSRELVA 174
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+++I P VLGH+D+AP K DPGP FPW +LYL YG+GAW PDE V ++ A
Sbjct: 175 RYQIPPTQVLGHSDVAPERKQDPGPHFPWRQLYLTYGVGAW--PDEGRVAELL-----AS 227
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQ 251
P P D ++ + L YGY + + + R+V+ AF+ HF A++
Sbjct: 228 PLP-DWDAAMWQQQLARYGYGLPRSGQWDEQSRAVMSAFQLHFRASK 273
>gi|389841564|ref|YP_006343648.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
ES15]
gi|387852040|gb|AFK00138.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
ES15]
Length = 276
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 127/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+I + GGK + Q+VP+ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKPVIWQLVPERELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 98 WHAGISFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 154 QRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPY 210
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 211 TP----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQS 262
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 EAIAEALLEKYGQ 275
>gi|227329256|ref|ZP_03833280.1| putative N-acetylmuramoyl-L-alanine amidase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 275
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 126/250 (50%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+++L++HYT +FA + T S+HY+I + L GK + Q+VP++ A
Sbjct: 43 IRFLVIHYTAEDFATSLNILTDEHV----SAHYLIPARPP--LQRGKPLAWQLVPESQSA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG WR LN+ SIGI + N G + PF +QI + + DIV ++
Sbjct: 97 WHAGASSWRGFSRLNNSSIGIEIENAGY-QRTLTGYTWEPFTASQIQLVTAIACDIVDRY 155
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
+I PQ V+ H+DIAP K DPGPLFPW L GIGAW PD V + RP
Sbjct: 156 QIAPQNVVAHSDIAPQRKQDPGPLFPWQAL-AQAGIGAW--PDAQRVAFYLN----GRPT 208
Query: 212 PRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
+ +D + LE L YGY+V T KR VI AF+ HF PE +
Sbjct: 209 MQPVDEAVLLEKLGRYGYSVQDMMTAREKRQVIAAFQMHF----RPENYQGQPDAQSEAI 264
Query: 268 AWALVAKYGS 277
AL+ KYGS
Sbjct: 265 VDALLEKYGS 274
>gi|156934635|ref|YP_001438551.1| hypothetical protein ESA_02469 [Cronobacter sakazakii ATCC BAA-894]
gi|156532889|gb|ABU77715.1| hypothetical protein ESA_02469 [Cronobacter sakazakii ATCC BAA-894]
Length = 276
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 127/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+I + GGK + Q+VP+ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKPVIWQLVPERELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 98 WHAGISFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 154 QRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPY 210
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 211 TP----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQS 262
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 EAIAEALLEKYGQ 275
>gi|417790961|ref|ZP_12438467.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
E899]
gi|449308819|ref|YP_007441175.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
SP291]
gi|333954954|gb|EGL72750.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
E899]
gi|449098852|gb|AGE86886.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cronobacter sakazakii
SP291]
Length = 276
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 127/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+I + GGK + Q+VP+ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKSVIWQLVPERELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAG+ WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 98 WHAGVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 154 QRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPY 210
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 211 TP----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQS 262
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 EAIAEALLEKYGQ 275
>gi|253688091|ref|YP_003017281.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251754669|gb|ACT12745.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 275
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 133/272 (48%), Gaps = 35/272 (12%)
Query: 21 KNRNHYDSRDGMS-------VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--- 70
+ +N+Y G+ +++L++HYT +FA + T S+HY++
Sbjct: 23 QEQNNYVLETGLQSRAQESRIRFLVIHYTAEDFATSLNILTDEHV----SAHYLVPAHPP 78
Query: 71 -KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
+ GK L Q+VP++ AWHAG WR LN+ SIGI + N G +
Sbjct: 79 LQRGKPL----AWQLVPESQAAWHAGASSWRGFSRLNNSSIGIEIENAGY-QRTLTGYTW 133
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF QI + L +DIV++++I PQ V+ H+DIAP K DPGPLFPW L G+GA
Sbjct: 134 EPFTAAQIQLVTALARDIVARYQIAPQNVVAHSDIAPQRKQDPGPLFPWQAL-AQAGVGA 192
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKT 245
W PD V ++ RP + +D + LE L YGY+V T KR VI AF+
Sbjct: 193 W--PDAQRVAFYLQ----GRPTTQSVDEAVLLEKLGRYGYSVQDTMTAREKRQVIAAFQM 246
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF P + AL+ KYGS
Sbjct: 247 HF----RPANYQGQPDAQSEAIVDALLEKYGS 274
>gi|336249474|ref|YP_004593184.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter aerogenes
KCTC 2190]
gi|444352368|ref|YP_007388512.1| N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) [Enterobacter
aerogenes EA1509E]
gi|334735530|gb|AEG97905.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter aerogenes
KCTC 2190]
gi|443903198|emb|CCG30972.1| N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) [Enterobacter
aerogenes EA1509E]
Length = 280
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I E+ + ++ Q+VP+ AWH
Sbjct: 48 IKVLVIHYTADNFDVSLATLTDKEV----SSHYLIPEQPPLHHGKPRIWQLVPEEDLAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AGI WR +N SIGI L N G + ++ PF+ QI L L KDI++++ I
Sbjct: 104 AGISFWRGSTRINDTSIGIELENRGW-QKNGDIKSFTPFNPTQIDALIPLAKDIIARYHI 162
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+PQ V+ H DIAP K DPGPLFPW L GIGAW PD+ V ++ RP +
Sbjct: 163 QPQNVVAHADIAPQRKDDPGPLFPWRAL-AQQGIGAW--PDDSRVAFYLQ----GRPGWQ 215
Query: 214 KLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
+D G L+LL YGY V T ++ VI AF+ HF P R + A
Sbjct: 216 PVDSGELLDLLSRYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTQAIAE 271
Query: 270 ALVAKYGS 277
AL+ KYG
Sbjct: 272 ALLEKYGQ 279
>gi|423107559|ref|ZP_17095254.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5243]
gi|376388331|gb|EHT01030.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5243]
Length = 276
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 131/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
++I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YQILPQDVVAHADIAPQRKDDPGPLFPWHRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYEPVDTAELLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|429118752|ref|ZP_19179501.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 680]
gi|426326779|emb|CCK10238.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 680]
Length = 276
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 127/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+I + GGK + Q+VP+ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKPVIWQLVPERELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 98 WHAGISFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 154 QRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPY 210
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 211 AP----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQS 262
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 EAIAGALLEKYGQ 275
>gi|423113500|ref|ZP_17101191.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5245]
gi|376388869|gb|EHT01562.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5245]
Length = 276
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 131/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I EK + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEKPPLHGGKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGVK----SFTPFNPAQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
++I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YQILPQNVVAHADIAPQRKDDPGPLFPWHRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF P R + +
Sbjct: 209 SYEPVDTAELLDVLARYGYQVTPEMTPAQQKRVIMAFQMHF----RPARWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|167615254|ref|ZP_02383889.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis Bt4]
Length = 346
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 38/278 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID R+ V+ L+LHYT A I + TS + SSHY++
Sbjct: 60 GYAID--------RSIQSPNQDSRVRTLVLHYTAQTLADSIASLTSPQRQV--SSHYLVP 109
Query: 70 EKEGKYLPGG---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--- 123
+ GG KV ++VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 110 DAPD----GGERFKVFELVPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENL 165
Query: 124 -FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ +YP+ + Q+ G L ++V++ ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 166 PLMNRRWYPYPDAQVAVFGALAAEVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLY 225
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKR 237
Y IGAW P+ V+ ++ RP+ D L AYGY+ T
Sbjct: 226 DQYKIGAW--PETEAVD----YYRTNRPF--AGDVASLQSKLLAYGYDAPQTGTLDAQTV 277
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
+V+ AF+ HF P R E + AL+ KY
Sbjct: 278 NVVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 311
>gi|365837871|ref|ZP_09379228.1| N-acetylmuramoyl-L-alanine amidase [Hafnia alvei ATCC 51873]
gi|364561062|gb|EHM38976.1| N-acetylmuramoyl-L-alanine amidase [Hafnia alvei ATCC 51873]
Length = 285
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 131/253 (51%), Gaps = 29/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+++L+LHYT +F + T S+HY++ + GKY+ V Q+VP++
Sbjct: 51 IRFLVLHYTAEDFHSSLKTLTDEHV----SAHYLVPARPPQNNGKYV----VWQLVPESQ 102
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG WR NLN SIGI + N G + + P+ E Q + L KDIV
Sbjct: 103 RAWHAGASAWRGRSNLNDTSIGIEIENKGY-QQGMLERIWLPYTEQQTELVIALSKDIVQ 161
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I PQ V+GH DIAP K+DPGPLFPW K + GIGAW PD TV ++ R
Sbjct: 162 RYGIAPQNVVGHMDIAPQRKLDPGPLFPW-KTLAEQGIGAW--PDRATVT----RYLAGR 214
Query: 210 PYPRKLDRGIFLELLKAYGYNVT-----ITNKRSVIRAFKTHFSANQNPERIYADITTED 264
+D + L AYGY++ T R+VI AF+ HF R D TE
Sbjct: 215 AKEAPVDVLTLQKKLAAYGYDIVPNGINDTMSRNVIAAFQMHFRPADF--RGIPDAETEA 272
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYGS
Sbjct: 273 I--ADALLEKYGS 283
>gi|421727841|ref|ZP_16166999.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca M5al]
gi|410371324|gb|EKP26047.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca M5al]
Length = 274
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I E + ++ Q+VP+ AWH
Sbjct: 42 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEIPPLHGGKPRIWQLVPEEDLAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 98 AGVSFWRGSTRINDTSIGIELENRGWQKTAGGK----SFTPFNPAQIDALIPLAKDIIAR 153
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 154 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDAQRVAFYLQ----GRP 206
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF PER + +
Sbjct: 207 SYEPVDAAELLDVLSRYGYQVTPDMTPAQQKRVIMAFQMHF----RPERWDGVADAQTLA 262
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 263 IAEALLEKYG 272
>gi|399023023|ref|ZP_10725090.1| negative regulator of beta-lactamase expression [Chryseobacterium
sp. CF314]
gi|398083582|gb|EJL74287.1| negative regulator of beta-lactamase expression [Chryseobacterium
sp. CF314]
Length = 342
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+YLILHYT IT T S+HY+++ ++ Q+V +N RA+HA
Sbjct: 106 RYLILHYTALPDDKSITVLTQQSV----SAHYLVNN-----TGDNEIYQLVDENKRAYHA 156
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
GI WR D+NLN SIG+ +VN G + + + PF E+Q+ + L KDIV++++I
Sbjct: 157 GISTWRNDKNLNDNSIGVEIVNTGYIADTTGKRVFAPFSEDQVKKVAALAKDIVTRYQIP 216
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF---KPARPY 211
P VL H+DIAP K DPGP+FPW KLY +Y IG W EA+ + F +
Sbjct: 217 PTNVLAHSDIAPARKQDPGPMFPWKKLYDEYQIGMWYD------EAVKQSFYELAVSTEL 270
Query: 212 PRKLDRGIFL----ELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P K + F+ L+ +GY + + I AF+ HF
Sbjct: 271 PMKYNEPSFIFNVQSQLQKFGYGTETSGSWDDATKKTIEAFQYHF 315
>gi|403058147|ref|YP_006646364.1| N-acetylmuramoyl-L-alanine amidase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805473|gb|AFR03111.1| putative N-acetylmuramoyl-L-alanine amidase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 275
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 128/252 (50%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE----KEGKYLPGGKVIQIVPDNM 89
+++L++HYT +FA + T + S+HY++ + GK L Q+VP++
Sbjct: 43 IRFLVIHYTAEDFATSLNILTDDHV----SAHYLVPAHPPLQHGKPL----AWQLVPESQ 94
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
AWHAG WR LN+ SIGI + N G + PF +QI + + +DIV
Sbjct: 95 AAWHAGASSWRGFSRLNNSSIGIEIENAGY-QRTLTGYTWEPFTASQIQLVTAIARDIVD 153
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+++I PQ V+ H+DIAP K DPGPLFPW K G+GAW PD V + P +
Sbjct: 154 RYQIAPQNVVAHSDIAPQRKQDPGPLFPW-KALAQAGVGAW--PDAQRVAFYLNGRLPLQ 210
Query: 210 PYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P +D + LE L YGY+V T KR VI AF+ HF PE ++
Sbjct: 211 P----VDEAVLLEKLGRYGYSVQDTMTAREKRQVIAAFQMHF----RPENYQGQPDSQSE 262
Query: 266 FWAWALVAKYGS 277
AL+ KYGS
Sbjct: 263 AIVDALLEKYGS 274
>gi|406678411|ref|ZP_11085587.1| hypothetical protein HMPREF1170_03795 [Aeromonas veronii AMC35]
gi|404622492|gb|EKB19355.1| hypothetical protein HMPREF1170_03795 [Aeromonas veronii AMC35]
Length = 295
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 21/243 (8%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E++ + + + + +LILHYT + A+ + T H + S+HY+I ++ P
Sbjct: 43 EYQLSTRYQSANQNERIAFLILHYTDEDDANSLRLLTEPE-HKV-SAHYLIP-RDSHETP 99
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF----RSTNYYPFD 133
V Q+VPDN RAWHAG +W + LN+ S+GI +VN G E + + P+
Sbjct: 100 L-TVYQLVPDNARAWHAGRSRWHQYAGLNASSLGIEIVNLGYPAEDEPLAPDARRWQPYT 158
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI T+G L +++V++++I P VLGH+D+AP K DPGP FPW +LYL YG+GAW P
Sbjct: 159 PQQIATVGTLSRELVARYQIPPTQVLGHSDVAPERKQDPGPHFPWRQLYLMYGVGAW--P 216
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFS 248
DE V ++ A P P D ++ + L YGY + + + R+V+ AF+ HF
Sbjct: 217 DEDRVAELL-----ASPLP-DWDAVMWQQQLARYGYGLPRSGQWDEQSRAVMGAFQLHFR 270
Query: 249 ANQ 251
A++
Sbjct: 271 ASK 273
>gi|317491417|ref|ZP_07949853.1| N-acetylmuramoyl-L-alanine amidase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920964|gb|EFV42287.1| N-acetylmuramoyl-L-alanine amidase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 285
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 131/253 (51%), Gaps = 29/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+++L+LHYT +F + T S+HY++ + GKY+ V Q+VP++
Sbjct: 51 IRFLVLHYTAEDFHSSLKTLTDEHV----SAHYLVPARPPQNNGKYV----VWQLVPESQ 102
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG WR NLN SIGI + N G + + P+ E Q + L KDIV
Sbjct: 103 RAWHAGASAWRGRSNLNDTSIGIEIENKGY-QQGMLERIWLPYTEQQTELVIALSKDIVQ 161
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I PQ V+GH DIAP K+DPGPLFPW K + G+GAW PD TV ++ R
Sbjct: 162 RYGIAPQNVVGHMDIAPQRKLDPGPLFPW-KTLAEQGVGAW--PDRATVT----RYLAGR 214
Query: 210 PYPRKLDRGIFLELLKAYGYNVT-----ITNKRSVIRAFKTHFSANQNPERIYADITTED 264
+D + L AYGY++ T R+VI AF+ HF R D TE
Sbjct: 215 AKEAPVDVLTLQKKLAAYGYDIVPNGINDTMSRNVIAAFQMHFRPADF--RGIPDAETEA 272
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYGS
Sbjct: 273 I--ADALLEKYGS 283
>gi|295096437|emb|CBK85527.1| Negative regulator of beta-lactamase expression [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 276
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 128/252 (50%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I K ++ Q+VP++ AWH
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDKNV----SSHYLIPAKPPAPQGKPRIWQLVPESELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIHTLGLLGKDIVS 149
AGI WR +N S+GI L N G +R T + PF+ QI L L +DI++
Sbjct: 100 AGISFWRGTNRINDTSVGIELENRG-----WRKTGDVKTFTPFEPGQIAALIPLARDIIA 154
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ IKPQ V+ H+DIAP K DPGPLFPW +L GIGAW P + + R
Sbjct: 155 RYDIKPQNVVAHSDIAPQRKDDPGPLFPWREL-AQQGIGAWPDPGRVNF------YINGR 207
Query: 210 PYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P+ +++D L+LL YGY V T ++ +I F+ HF P+ E M
Sbjct: 208 PHYQQVDTAALLDLLARYGYEVPENSTPEQQKRIIMVFQMHF----RPQLWSGVADVETM 263
Query: 266 FWAWALVAKYGS 277
A AL+ KYG
Sbjct: 264 AIAEALLEKYGQ 275
>gi|37526680|ref|NP_930024.1| hypothetical protein plu2790 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786112|emb|CAE15164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 273
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 139/280 (49%), Gaps = 33/280 (11%)
Query: 3 SSIHGMPGYVIDP-FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
SS+ Y +D FP +N V++L+ HYT + + T
Sbjct: 18 SSLEDRGAYKVDSSFPSQGQNDR---------VRFLVFHYTAVDDKDSLRILTQGGV--- 65
Query: 62 HSSHYVISEKEGKYLPGGKVI-QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S+HY+I Y+ G VI Q+VP+ RAWHAG+ W ++LN SIGI +VN G
Sbjct: 66 -SAHYLIPSLPN-YVRGKPVILQLVPEEKRAWHAGVSGWNGRKDLNDTSIGIEIVNKGFT 123
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
E +YPF+E QI L L KDI+ ++ I+P V+GH+DIAP K DPG LFPW
Sbjct: 124 -EMLLEKEWYPFNEQQIDLLTRLAKDIIQRYGIEPINVVGHSDIAPLRKYDPGKLFPWKN 182
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----N 235
L + GIGAW P++ TVE K+ R + K + + L YGY + T +
Sbjct: 183 L-AEQGIGAW--PEDATVE----KYMAGRKWHDKASVELIQKTLAKYGYTIPQTGVLDED 235
Query: 236 KRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
R I AF+ HF P+ I + + A ALV KY
Sbjct: 236 TRKTISAFQMHF----RPDDISGNPDAQTESIALALVEKY 271
>gi|423128315|ref|ZP_17115994.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5250]
gi|376393671|gb|EHT06327.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5250]
Length = 276
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T N+ SSHY+I E + ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPEIPPLHGGKPRIWQLVPEEDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGVSFWRGSTRINDTSIGIELENRGWQKTAGGK----SFTPFNPVQIDALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L + GIGAW PD V ++ RP
Sbjct: 156 YHIAPQNVVAHADIAPQRKDDPGPLFPWRRL-AEQGIGAW--PDARRVAFYLQ----GRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L++L YGY V T ++ VI AF+ HF PER + +
Sbjct: 209 SYEPVDAAALLDVLSRYGYQVTPDMTPAQQKRVIMAFQMHF----RPERWDGVADAQTLA 264
Query: 267 WAWALVAKYG 276
A AL+ KYG
Sbjct: 265 IAEALLEKYG 274
>gi|83716809|ref|YP_438737.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia thailandensis
E264]
gi|83650634|gb|ABC34698.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis E264]
Length = 315
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 140/278 (50%), Gaps = 38/278 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + SSHY++
Sbjct: 29 GYAID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SSHYLVP 78
Query: 70 EKEGKYLPGG---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--- 123
+ GG KV ++VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 79 DAPD----GGERFKVFELVPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENL 134
Query: 124 -FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ +YP+ + Q+ G L ++V++ ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 135 PLMNRRWYPYPDAQVAVFGALAAEVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLY 194
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKR 237
Y IGAW P+ V+ ++ RP+ D L AYGY+ T
Sbjct: 195 DQYKIGAW--PETEAVD----YYRTNRPF--AGDVASLQSKLLAYGYDAPQTGTLDVQTV 246
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
+V+ AF+ HF P R E + AL+ KY
Sbjct: 247 NVVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 280
>gi|227112023|ref|ZP_03825679.1| putative N-acetylmuramoyl-L-alanine amidase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 275
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 127/252 (50%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE----KEGKYLPGGKVIQIVPDNM 89
+++L++HYT +FA + T + S+HY++ + GK L Q+VP++
Sbjct: 43 IRFLVIHYTAEDFATSLNILTDDHV----SAHYLVPAHPPLQHGKPL----AWQLVPESQ 94
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
AWHAG WR LN+ SIGI + N G + PF +QI + + +DIV
Sbjct: 95 AAWHAGASSWRGFSRLNNSSIGIEIENAGY-QRTLTGYTWEPFTASQIQLVNAIARDIVD 153
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+++I PQ V+ H+DIAP K DPGPLFPW K G+GAW PD V + P +
Sbjct: 154 RYQIAPQNVVAHSDIAPQRKQDPGPLFPW-KALAQAGVGAW--PDAQRVAFYLNGRLPMQ 210
Query: 210 PYPRKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P +D + LE L YGY+V T KR VI AF+ HF PE +
Sbjct: 211 P----VDEAVLLEKLGRYGYSVQDTMSAREKRQVIAAFQMHF----RPENYQGQPDAQSE 262
Query: 266 FWAWALVAKYGS 277
AL+ KYGS
Sbjct: 263 AIVDALLEKYGS 274
>gi|261339178|ref|ZP_05967036.1| hypothetical protein ENTCAN_05402 [Enterobacter cancerogenus ATCC
35316]
gi|288319023|gb|EFC57961.1| N-acetylmuramoyl-L-alanine amidase family protein [Enterobacter
cancerogenus ATCC 35316]
Length = 276
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 129/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I + P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDKNV----SSHYLIPARPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR +N SIGI L N G G K+ + PF+ QI L L KDIV
Sbjct: 98 WHAGISFWRGTNRINDTSIGIELENRGWQKAAGMKY----FAPFEPAQIAALIPLAKDIV 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ IKP+ V+ H DIAP K DPGPLFPW +L + GIGAW P + +
Sbjct: 154 ARYNIKPENVVAHADIAPQRKDDPGPLFPWREL-AEQGIGAWPDPHRVAF------YLDG 206
Query: 209 RPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTED 264
+P + +D L LL YGY V T ++ +I AF+ HF P+R E
Sbjct: 207 QPPYQAVDTAALLGLLARYGYEVPENSTAAQQKRIIMAFQMHF----RPQRWDGVADRET 262
Query: 265 MFWAWALVAKYGS 277
M A AL+ KYG
Sbjct: 263 MAIAEALLEKYGQ 275
>gi|167577085|ref|ZP_02369959.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
thailandensis TXDOH]
Length = 344
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 140/278 (50%), Gaps = 38/278 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + SSHY++
Sbjct: 58 GYAID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SSHYLVP 107
Query: 70 EKEGKYLPGG---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--- 123
+ GG KV ++VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DAPD----GGERFKVFELVPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENL 163
Query: 124 -FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ +YP+ + Q+ G L ++V++ ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 164 PLMNRRWYPYPDAQVAVFGALAAEVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLY 223
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKR 237
Y IGAW P+ V+ ++ RP+ D L AYGY+ T
Sbjct: 224 DQYKIGAW--PETEAVD----YYRTNRPF--AGDVASLQSKLLAYGYDAPQTGTLDAQTV 275
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
+V+ AF+ HF P R E + AL+ KY
Sbjct: 276 NVVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|257141815|ref|ZP_05590077.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia thailandensis E264]
Length = 344
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 140/278 (50%), Gaps = 38/278 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + SSHY++
Sbjct: 58 GYAID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIASLTSPQRQV--SSHYLVP 107
Query: 70 EKEGKYLPGG---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--- 123
+ GG KV ++VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DAPD----GGERFKVFELVPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENL 163
Query: 124 -FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ +YP+ + Q+ G L ++V++ ++ P V+GH+D+APG K DPGPLFPW KLY
Sbjct: 164 PLMNRRWYPYPDAQVAVFGALAAEVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLY 223
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKR 237
Y IGAW P+ V+ ++ RP+ D L AYGY+ T
Sbjct: 224 DQYKIGAW--PETEAVD----YYRTNRPF--AGDVASLQSKLLAYGYDAPQTGTLDVQTV 275
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
+V+ AF+ HF P R E + AL+ KY
Sbjct: 276 NVVSAFQMHF----RPSRYDGVPDVETVAILDALLEKY 309
>gi|167573676|ref|ZP_02366550.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
oklahomensis C6786]
Length = 348
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 135/260 (51%), Gaps = 32/260 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + + T + SSHY++ + +G+ KV ++
Sbjct: 75 DSR----VRTLVLHYTAQTLADSLASLTDTQRQV--SSHYLVPDAADDGQRF---KVFEL 125
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E + +YP+ + Q+
Sbjct: 126 VPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLPLMNRRWYPYPDAQVAVF 185
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L D+V++ ++ P V+GH+D+APG K DPGPLFPW KLY Y IGAW P+ V+
Sbjct: 186 GALAADVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYDQYRIGAW--PEAEAVD- 242
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPER 255
++ RP+ D L AYGY+ T +++ AF+ HF P R
Sbjct: 243 ---YYRTNRPF--AGDVASLQSKLLAYGYDTPQTGALDAQTVNIVSAFQMHF----RPSR 293
Query: 256 IYADITTEDMFWAWALVAKY 275
E + AL+ KY
Sbjct: 294 YDGVPDVETVAILDALLEKY 313
>gi|432371608|ref|ZP_19614661.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE11]
gi|430899046|gb|ELC21152.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli KTE11]
Length = 276
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N SIGI L N G +K Y+ PF+ QI L L K+I++++
Sbjct: 100 AGISAWRGATRINDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKEIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDASRVSFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ LELL YGY+V T ++ VI AF+ HF P + E A
Sbjct: 213 --VETASLLELLARYGYDVKPEMTPREQQRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|217425113|ref|ZP_03456608.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 576]
gi|217391718|gb|EEC31745.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 576]
Length = 341
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 34/237 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE--GKYLPGGKVI 82
+ DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V
Sbjct: 67 NQDSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVY 117
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+
Sbjct: 118 ALVPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMA 177
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + V
Sbjct: 178 VVGRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAV 235
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
E ++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 236 E----YYRACRPF-----RGDIAELQAKLLAYGYDTPQTVVLDLRTTDVIAAFQMHF 283
>gi|453066891|gb|EMF07815.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia marcescens VGH107]
Length = 278
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + V ++ P+ MRAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPQREHGKPTVYRLEPEAMRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR NLN SIGI +VN G T++ P+ QI L L +DI+ ++ I
Sbjct: 101 AGASAWRGRSNLNDTSIGIEIVNKGFT-RSMLFTHWQPYTAEQIAVLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+PQ V+GH+DIAP K DPGPLFPW +L GIGAW PDE V+ ++ P P
Sbjct: 160 QPQDVVGHSDIAPQRKQDPGPLFPWRQL-AQAGIGAW--PDEADVQRLLAGRDRHAPVP- 215
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
L+ L YGY V + +R+V+ AF+ HF P+ + + E
Sbjct: 216 ---LAPLLDKLARYGYAVDSSWDARQQRNVLAAFQMHF----RPDDVRGEPDAESEAIID 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLLKYGA 276
>gi|167828669|ref|ZP_02460140.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 9]
gi|167907073|ref|ZP_02494278.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei NCTC 13177]
gi|226196024|ref|ZP_03791610.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pakistan 9]
gi|254185221|ref|ZP_04891810.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1655]
gi|184215813|gb|EDU12794.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1655]
gi|225931917|gb|EEH27918.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pakistan 9]
Length = 341
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 34/237 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE--GKYLPGGKVI 82
+ DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V
Sbjct: 67 NQDSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVY 117
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+
Sbjct: 118 ALVPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMA 177
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + V
Sbjct: 178 VVGRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAV 235
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
E ++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 236 E----YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|238765216|ref|ZP_04626146.1| N-acetylmuramoyl-L-alanine amidase [Yersinia kristensenii ATCC
33638]
gi|238696544|gb|EEP89331.1| N-acetylmuramoyl-L-alanine amidase [Yersinia kristensenii ATCC
33638]
Length = 283
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 130/249 (52%), Gaps = 25/249 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A + T S+HY++ V+Q+VP++ RAWH
Sbjct: 48 VRFLVLHYTATDDAESLRLLTQGDV----SAHYLVKTHPDNLDGKPIVLQLVPESERAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W +LN SIGI +VN G EK +YP++E+QI + L KDIV ++ I
Sbjct: 104 AGVSYWHGRNSLNDTSIGIEIVNKGFT-EKMLGRQWYPYNESQIQLIERLTKDIVERYNI 162
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+ H+DIAP K DPGPLFPW +L + GIGAW PD+ TV K+ R
Sbjct: 163 DPTDVVAHSDIAPQRKSDPGPLFPWKRL-AEQGIGAW--PDDATVT----KYIDGRNKND 215
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYA--DITTEDMF 266
I + L YGY + + + + VI AF+ HF P+ D+ TE +
Sbjct: 216 LASVAIIQQALARYGYQIPQSGELDDESKHVIEAFQMHF----RPQDFSGVPDVETEAI- 270
Query: 267 WAWALVAKY 275
A ALV KY
Sbjct: 271 -ALALVEKY 278
>gi|167840488|ref|ZP_02467172.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
thailandensis MSMB43]
gi|424905652|ref|ZP_18329155.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
thailandensis MSMB43]
gi|390928545|gb|EIP85949.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
thailandensis MSMB43]
Length = 344
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 142/280 (50%), Gaps = 38/280 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
GY ID + DSR V+ L+LHYT A I + TS + SSHY++
Sbjct: 58 GYTID----RSIQSPNQDSR----VRTLVLHYTAQTLADSIVSLTSPQRQV--SSHYLVP 107
Query: 70 EKEGKYLPGG---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--- 123
+ GG KV ++VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E
Sbjct: 108 DAAD----GGQRFKVFELVPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENL 163
Query: 124 -FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ +YP+ + Q+ G L D+V++ ++ P V+GH+D+APG K DPGPLFPW LY
Sbjct: 164 PLMNRRWYPYPDAQVAVFGALAADVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKTLY 223
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT---NKRS- 238
Y IGAW P+ V+ ++ RP+ D L AYGY+ T + R+
Sbjct: 224 DQYRIGAW--PETEAVD----YYRTNRPF--AGDVASLQSRLLAYGYDAPQTGTLDARTV 275
Query: 239 -VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
V+ AF+ HF P R E + AL+ KY S
Sbjct: 276 DVVSAFQMHF----RPSRYDGVPDVETVAILDALLEKYFS 311
>gi|238749513|ref|ZP_04611018.1| N-acetylmuramoyl-L-alanine amidase [Yersinia rohdei ATCC 43380]
gi|238712168|gb|EEQ04381.1| N-acetylmuramoyl-L-alanine amidase [Yersinia rohdei ATCC 43380]
Length = 283
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 132/248 (53%), Gaps = 23/248 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK-VIQIVPDNMRAW 92
VK+L+LHYT N + T S+HY++ + +L G V+Q+VP++ RAW
Sbjct: 49 VKFLVLHYTATNDVESLRLLTQGDV----SAHYLV-KTHPHHLDGKPIVLQLVPESQRAW 103
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ W+ LN SIGI +VN G ++ +YP++E+QI + L KDIV ++
Sbjct: 104 HAGVSYWQGHTGLNDTSIGIEIVNKGFT-KRMLYRQWYPYNESQIKLIERLTKDIVERYN 162
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P V+ H+DIAP K DPGPLFPW +L G+GAW PD+ TV K+ R
Sbjct: 163 INPADVVAHSDIAPLRKSDPGPLFPWQRL-AQQGVGAW--PDDATVN----KYINGRNKQ 215
Query: 213 RKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
I + L YGY + + + R VI+AF+ HF A D+ TE +
Sbjct: 216 DGASVSIIQQTLARYGYQIPQSGRLDSETRQVIKAFQMHFRAQDFSGE--PDVETEAI-- 271
Query: 268 AWALVAKY 275
A ALV KY
Sbjct: 272 ALALVEKY 279
>gi|170703985|ref|ZP_02894642.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria IOP40-10]
gi|170131106|gb|EDS99776.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria IOP40-10]
Length = 345
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 24/230 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V+ L+LHYT A I + T + SSHY++ + P +V +VP
Sbjct: 64 DSR----VRTLVLHYTAETLADSIASLTDPQKQV--SSHYLVPDAANGSGPF-RVYALVP 116
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS----TNYYPFDENQIHTLGL 142
++ RAWHAG+ W+ +R LN+ ++GI +VN G + + +YP+ + QI +G
Sbjct: 117 ESRRAWHAGVSYWQGERMLNASTVGIEIVNLGFPAQDENAPPMNRRWYPYSDAQIAVVGR 176
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L D++++ +I PQ V+GH+DIAPG K DPGPLFPW LY YGIGAW EA
Sbjct: 177 LAADVIARHEILPQKVVGHSDIAPGRKWDPGPLFPWQWLYTQYGIGAW-------PEAEA 229
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+ +R P + D G L AYGY+ T +V+ AF+ HF
Sbjct: 230 IGYYSSR-QPFRGDIGALQGKLLAYGYDTPQTGVLDAQTANVVAAFQMHF 278
>gi|195940792|ref|ZP_03086174.1| N-acetylmuramoyl-L-alanine amidase [Escherichia coli O157:H7 str.
EC4024]
Length = 275
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 130/254 (51%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I P GK + Q+VP++ A
Sbjct: 43 IKVLVIHYTADDFDTSLATLTDKNV----SSHYLIPANPPA--PDGKPRIWQLVPESELA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIHTLGLLGKDI 147
WHAGI WR +N S+GI L N G +R T + PF+ QI L L +DI
Sbjct: 97 WHAGISFWRGTNRINDTSVGIELENRG-----WRKTHGVKTFAPFEPTQIAALIPLARDI 151
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H+DIAP K DPGPLFPW +L GIGAW P A V +
Sbjct: 152 IARYDIKPQNVVAHSDIAPQRKDDPGPLFPWHEL-AQQGIGAWPDP------ARVNFYIN 204
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
RP +++D + L+LL YGY V T ++ +I F+ HF P+ E
Sbjct: 205 GRPRYQQVDTAVLLDLLSRYGYEVPEDATPVQQQRIIMVFQMHF----RPQLWNGIADVE 260
Query: 264 DMFWAWALVAKYGS 277
M A AL+ KYG
Sbjct: 261 TMAIAEALLEKYGQ 274
>gi|117619832|ref|YP_855357.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561239|gb|ABK38187.1| putative N-acetylmuramoyl-L-alanine amidase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 306
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 139/264 (52%), Gaps = 27/264 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGGK 80
N ++ + + +LILHYT + H + T AH + S+HY+I + + + LP
Sbjct: 55 NHDYQSASQNERIAFLILHYTDEDDGHSLRLLTEP-AHQV-SAHYLIPRDTDERPLP--- 109
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQ 136
V Q+VPD+ RAWHAG +W + LN+ S+GI +VN G + ++ P+ + Q
Sbjct: 110 VYQLVPDSQRAWHAGRSRWHQYAGLNASSLGIEIVNLGYPPQDELLPAHQRHWQPYTQAQ 169
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I LG L +++V +++I P VL H+D+AP K DPGP FPW +L L YG+GAW PDE
Sbjct: 170 IAALGALTRELVERYQIPPTQVLAHSDVAPERKQDPGPHFPWRELALHYGVGAW--PDET 227
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
+ + ++ PA D + + L YGY V + R+ +RAF+ HF
Sbjct: 228 RLAELRQQPAPA------WDALGWQQRLARYGYGVAPSGSWDEQSRAALRAFQLHF---- 277
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P + ++ E AL+ +Y
Sbjct: 278 RPALVSSEPDAESQAILTALLERY 301
>gi|126444105|ref|YP_001063109.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 668]
gi|126223596|gb|ABN87101.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 668]
Length = 345
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 127/235 (54%), Gaps = 31/235 (13%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQI 84
DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V +
Sbjct: 70 DSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAADAGTLFRVYAL 123
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +
Sbjct: 124 VPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMAVV 183
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + VE
Sbjct: 184 GRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDGIAVE- 240
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 241 ---YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 287
>gi|423119474|ref|ZP_17107158.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5246]
gi|376398532|gb|EHT11157.1| N-acetylmuramoyl-L-alanine amidase AmiD [Klebsiella oxytoca
10-5246]
Length = 275
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 127/251 (50%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK L++HYT +F + T N+ SSHY+I ++ Y ++ Q+VP+ AWH
Sbjct: 43 VKVLVIHYTADDFDVSLATLTDNQV----SSHYLIPQQPPLYQGKPRIWQLVPEQDLAWH 98
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AGI WR +N SIGI L N G G K ++ PF QI+ L L KDI+++
Sbjct: 99 AGISFWRGSTRINDTSIGIELENRGWQKSAGVK----SFTPFSPAQINALIPLAKDIIAR 154
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+ H DIAP K DPGPLFPW +L GIGAW PD V + RP
Sbjct: 155 YHIAPQNVVAHADIAPQRKDDPGPLFPWRQL-AGQGIGAW--PDASRVAFYLN----GRP 207
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ +D L+ L YGY V T ++ VI AF+ HF P R E
Sbjct: 208 SYQPVDSAELLDTLSRYGYQVTPEMTSAQQKRVIMAFQMHF----RPARWDGVADAETQA 263
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 264 IADALLEKYGQ 274
>gi|200390776|ref|ZP_03217387.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199603221|gb|EDZ01767.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 276
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 127/254 (50%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NFA + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFAVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRTP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|386335626|ref|YP_006031796.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Ralstonia solanacearum
Po82]
gi|334198076|gb|AEG71260.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Ralstonia solanacearum
Po82]
Length = 345
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 38/237 (16%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG----KVI 82
DSR V+ L+LHYT A I T + SSHY++ + P G +V
Sbjct: 64 DSR----VRTLVLHYTAETLADSIALLTDPQKEV--SSHYLVPDA-----PDGGERFRVY 112
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ ++GI +VN G + + +YP+ + QI
Sbjct: 113 ALVPEAGRAWHAGVSYWQGERMLNASTVGIEVVNLGFPAQDKDAPLMNRRWYPYPDAQIA 172
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L D+V++ I+PQ V+GH+DIAPG K+DPGPLFPW KLY YG+GAW
Sbjct: 173 VVGRLAADVVARHGIRPQKVVGHSDIAPGRKLDPGPLFPWKKLYEQYGVGAWPE-----A 227
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
EAI ++ +P+ RG L L L AYGY+ T +V+ AF+ HF
Sbjct: 228 EAI-GYYRNNQPF-----RGDILALQAKLLAYGYDTPQTGVLDAQTVNVVAAFQMHF 278
>gi|334122681|ref|ZP_08496717.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter hormaechei ATCC
49162]
gi|333391796|gb|EGK62905.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter hormaechei ATCC
49162]
Length = 276
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 130/254 (51%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDKNV----SSHYLIPANPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIHTLGLLGKDI 147
WHAGI WR +N S+GI L N G +R T + PF+ QI L L +DI
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRG-----WRKTHGVKTFVPFEPKQIAALIPLARDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H+DIAP K DPGPLFPW +L GIGAW P A V +
Sbjct: 153 IARYDIKPQNVVAHSDIAPQRKDDPGPLFPWHEL-AQQGIGAWPDP------ARVNFYIN 205
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
RP +++D + L+LL YGY V T ++ +I F+ HF P+ E
Sbjct: 206 GRPRYQQVDTAVLLDLLSRYGYEVPEDATPAQQQRIIMVFQMHF----RPQLWNGIADVE 261
Query: 264 DMFWAWALVAKYGS 277
M A AL+ KYG
Sbjct: 262 TMAIAEALLEKYGQ 275
>gi|398798489|ref|ZP_10557788.1| negative regulator of beta-lactamase expression [Pantoea sp. GM01]
gi|398100396|gb|EJL90635.1| negative regulator of beta-lactamase expression [Pantoea sp. GM01]
Length = 274
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 136/279 (48%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
SSI GY +D + R +K +++HYT +F+ + T
Sbjct: 18 SSIEARHGYWVDTAHPAQGARPR--------IKVVVIHYTAEDFSSSLATLTDREV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I + G + Q+VP++ AWHAG WR +N SIGI +VN G
Sbjct: 66 SAHYLIPRHPPQKNAQGIIWQLVPESQLAWHAGPSFWRGATRINDTSIGIEMVNSGY-RR 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI L L +DI ++ I P+ V+GH+DIAP K DPGPLFPW +L
Sbjct: 125 TLTGLQWQPFTPAQIDALKALVEDITQRYGISPENVVGHSDIAPQRKHDPGPLFPWQQLA 184
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN----KRS 238
G+GAW P++ TV+ ++ R +D+ + L L+ YGY+V +R
Sbjct: 185 AQ-GVGAW--PEQATVQ----RYLNGRAADEAVDQEVLLGALQRYGYDVAAATTPQMQRK 237
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+I AF+ HF P E + A AL+AKYG+
Sbjct: 238 LIAAFQMHF----RPADYRGIADAETLAIARALLAKYGA 272
>gi|300698014|ref|YP_003748675.1| putative N-acetylmuramyl-L-alanine amidase (ampD) , negative
regulator of AmpC [Ralstonia solanacearum CFBP2957]
gi|299074738|emb|CBJ54296.1| putative N-acetylmuramyl-L-alanine amidase (ampD) , negative
regulator of AmpC [Ralstonia solanacearum CFBP2957]
Length = 345
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 128/236 (54%), Gaps = 36/236 (15%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG---KVIQ 83
DSR V+ L+LHYT A I T + SSHY++ + GG +V
Sbjct: 64 DSR----VRTLVLHYTAETLADSIALLTDPQKEV--SSHYLVPDAAD----GGERFRVYA 113
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+VP+ RAWHAG+ W+ +R LN+ ++GI +VN G + + +YP+ + QI
Sbjct: 114 LVPEAGRAWHAGVSYWQGERMLNASTVGIEVVNLGFPAQDKNAPLINRRWYPYPDAQIAV 173
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L D+V++ I+PQ V+GH+DIAPG K+DPGPLFPW KLY YG+GAW +
Sbjct: 174 VGRLAADVVARHGIRPQKVVGHSDIAPGRKLDPGPLFPWKKLYEQYGVGAWPEAE----- 228
Query: 200 AIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
V ++ +P+ RG EL L AYGY+ T +V+ AF+ HF
Sbjct: 229 -AVGYYRNHQPF-----RGDIAELQAKLLAYGYDAPQTGMLDAQTVNVVAAFQMHF 278
>gi|168230801|ref|ZP_02655859.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194470926|ref|ZP_03076910.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194457290|gb|EDX46129.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205334758|gb|EDZ21522.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 276
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 127/254 (50%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NFA + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFAVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|254174208|ref|ZP_04880870.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
gi|254204192|ref|ZP_04910551.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
FMH]
gi|254209165|ref|ZP_04915512.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
JHU]
gi|147745076|gb|EDK52157.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
FMH]
gi|147750388|gb|EDK57458.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
JHU]
gi|160695254|gb|EDP85224.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
Length = 372
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 30/228 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE--GKYLPGGKVIQIVPDNMRA 91
V+ L+LHYT A + A ++ A + S+HY++ + G +V +VP+ RA
Sbjct: 103 VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVYALVPETNRA 157
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGV----VGEKFRSTNYYPFDENQIHTLGLLGKDI 147
WHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +G L DI
Sbjct: 158 WHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMAVVGRLAADI 217
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + VE ++
Sbjct: 218 AARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAVE----YYRA 271
Query: 208 ARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 272 CRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 314
>gi|167566594|ref|ZP_02359510.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
oklahomensis EO147]
Length = 348
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 126/232 (54%), Gaps = 28/232 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYLPGGKVIQI 84
DSR V+ L+LHYT A + + T + SSHY++ + +G+ KV ++
Sbjct: 75 DSR----VRTLVLHYTAQTLADSLASLTDTQRQV--SSHYLVPDAADDGQRF---KVFEL 125
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP+ RAWHAG+ W+ DR LN+ S+GI +VN G E + +YP+ + Q+
Sbjct: 126 VPEARRAWHAGVSYWQGDRMLNAGSVGIEIVNLGFPPEDENLPLMNRRWYPYPDAQVAVF 185
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L D+V++ ++ P V+GH+D+APG K DPGPLFPW KLY Y IGAW P+ V+
Sbjct: 186 GALAADVVARHQVLPHKVVGHSDVAPGRKTDPGPLFPWKKLYDQYRIGAW--PEAEAVD- 242
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
++ RP+ D L AYGY+ T +V+ +F+ HF
Sbjct: 243 ---YYRTNRPF--AGDVASLQSKLLAYGYDTPQTGALDAQTVNVVSSFQMHF 289
>gi|330828383|ref|YP_004391335.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas veronii B565]
gi|423210929|ref|ZP_17197482.1| hypothetical protein HMPREF1169_03000 [Aeromonas veronii AER397]
gi|328803519|gb|AEB48718.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas veronii B565]
gi|404614324|gb|EKB11325.1| hypothetical protein HMPREF1169_03000 [Aeromonas veronii AER397]
Length = 281
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 136/244 (55%), Gaps = 23/244 (9%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-L 76
E++ + + + + +LILHYT + A+ + T H + S+HY+I + L
Sbjct: 29 EYQLSTRYQSANQNERIAFLILHYTDEDDANSLRLLT-ELEHKV-SAHYLIPRDSHETPL 86
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF----RSTNYYPF 132
P V Q+VPD+ RAWHAG +W + LN+ S+GI +VN G E + + P+
Sbjct: 87 P---VYQLVPDSARAWHAGRSRWHQYAGLNASSLGIEIVNLGYPAEDEPLAPDARRWQPY 143
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI +G L +++V++++I P VLGH+D+AP K DPGP FPW +LYL YG+GAW
Sbjct: 144 TPQQIAAVGALSRELVARYQIPPTQVLGHSDVAPERKQDPGPHFPWRQLYLTYGVGAW-- 201
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
PDE V ++ A P P D ++ + L YGY + + + R+V+ AF+ HF
Sbjct: 202 PDEGRVAELL-----ASPLP-HWDAAMWQQQLARYGYGLPRSGQWDEQSRAVMGAFQLHF 255
Query: 248 SANQ 251
A++
Sbjct: 256 RASK 259
>gi|269120847|ref|YP_003309024.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sebaldella termitidis ATCC 33386]
gi|268614725|gb|ACZ09093.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sebaldella termitidis ATCC 33386]
Length = 281
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 29/225 (12%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+++ILHYTV + I T+ SSHY+I+++E + + +V +N RAWHA
Sbjct: 56 RFIILHYTVSDRERSIDLLTNKDV----SSHYLITDRENE-----PIYYLVDENKRAWHA 106
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+ W NLN SIGI +VN G + + + +Y + QIH +L +D++ +++++
Sbjct: 107 GVSSWGNFTNLNDNSIGIEIVNKGFILKDGK-MEFYRYPSWQIHKTAVLVQDLIKRYEVE 165
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA---RPY 211
PQ +LGH+DIAP K DPGPLFPW +LY DYGIG W DE E K+K A R
Sbjct: 166 PQNILGHSDIAPQRKQDPGPLFPWEELYRDYGIGMWY--DETDKE----KYKDAFDNRIT 219
Query: 212 PRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
P ++ + L+ +GY + ++ ++VI AF+ HF N+
Sbjct: 220 PEEVQKE-----LRKFGYGIAVSKVYDEQTKNVITAFQFHFRQNK 259
>gi|53717379|ref|YP_105474.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei ATCC 23344]
gi|53722512|ref|YP_111497.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
K96243]
gi|67640087|ref|ZP_00438907.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
GB8 horse 4]
gi|121597241|ref|YP_990205.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei SAVP1]
gi|124382515|ref|YP_001024522.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei NCTC 10229]
gi|126446345|ref|YP_001078845.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia mallei NCTC 10247]
gi|167003756|ref|ZP_02269540.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
PRL-20]
gi|167820296|ref|ZP_02451976.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 91]
gi|167923266|ref|ZP_02510357.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei BCC215]
gi|254186808|ref|ZP_04893324.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pasteur 52237]
gi|254355550|ref|ZP_04971830.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
2002721280]
gi|52212926|emb|CAH38963.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei K96243]
gi|52423349|gb|AAU46919.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 23344]
gi|121225039|gb|ABM48570.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei SAVP1]
gi|124290535|gb|ABM99804.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10229]
gi|126239199|gb|ABO02311.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10247]
gi|148023643|gb|EDK82705.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
2002721280]
gi|148750961|tpg|DAA06005.1| TPA_exp: BimB [Burkholderia mallei]
gi|157934492|gb|EDO90162.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei Pasteur 52237]
gi|238520741|gb|EEP84198.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
GB8 horse 4]
gi|243060771|gb|EES42957.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei
PRL-20]
Length = 341
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 127/235 (54%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVIQI 84
DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V +
Sbjct: 69 DSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVYAL 119
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+ +
Sbjct: 120 VPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMAVV 179
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + VE
Sbjct: 180 GRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAVE- 236
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 237 ---YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|401675487|ref|ZP_10807480.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter sp. SST3]
gi|400217465|gb|EJO48358.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter sp. SST3]
Length = 276
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPANPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAGI WR +N S+GI L N G T + PF QI L L +DI++++
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRGWQTRGGVKT-FTPFAPAQIAALIPLARDIIARY 156
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I+PQ V+ H DIAP K DPGPLFPW +L GIGAW P A V + RP
Sbjct: 157 DIQPQNVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAWPDP------ARVAFYLNGRPR 209
Query: 212 PRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
++++RG L++LK YGY N T ++ VI AF+ HF P E +
Sbjct: 210 YQEVERGALLDVLKRYGYEVPDNATEQQQKRVISAFQMHF----RPALWNGVADVETLAI 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|348617726|ref|ZP_08884262.1| N-acetylmuramoyl-L-alanine amidase amiD precursor [Candidatus
Glomeribacter gigasporarum BEG34]
gi|347816962|emb|CCD28895.1| N-acetylmuramoyl-L-alanine amidase amiD precursor [Candidatus
Glomeribacter gigasporarum BEG34]
Length = 266
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 23/251 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ L+LHYT +F + T +AH + S+HY+I E+ + V Q+VP++ A+H
Sbjct: 18 VQILVLHYTENSFERALELLT-KKAHGV-SAHYLIPEQAAEMSQPFPVYQLVPEHGCAYH 75
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTLGLLGKDIVS 149
AG+ W+ R LN+ S+GI + N G E + + P+ E Q +G L ++I +
Sbjct: 76 AGVSFWQGARLLNASSVGIEMANLGFAHEDQGLPLMARRWIPYPEAQFQAVGALAREIAA 135
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+++I P V+GH+DIAP K+DPGPLF W +LY ++G+GAW PDE TV R F
Sbjct: 136 RYQIAPHRVVGHSDIAPQRKIDPGPLFSWERLYREFGVGAW--PDEDTVAFYTRHF---- 189
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTED 264
P D L AYGY + + V+ AF+ HF P R + E
Sbjct: 190 --PYSDDIRALQGKLAAYGYEAAQDGRFNEAMQKVVAAFQIHF----RPARYDGALDIET 243
Query: 265 MFWAWALVAKY 275
AL+ KY
Sbjct: 244 AAILDALLEKY 254
>gi|238762590|ref|ZP_04623560.1| Negative regulator of beta-lactamase expression [Yersinia
kristensenii ATCC 33638]
gi|238699235|gb|EEP91982.1| Negative regulator of beta-lactamase expression [Yersinia
kristensenii ATCC 33638]
Length = 256
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 133/252 (52%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG----KVIQIVPDN 88
V++L+LHYT +F + + + T N S HY++ + + + Y G ++ +V +N
Sbjct: 17 VRFLVLHYTAEDFENSMKSLTGNNV----SVHYLVPDLDDESYKKAGFNDMRIFNLVDEN 72
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIGI +VN + E N+ P+ ENQI + L +I+
Sbjct: 73 ARAWHAGVSSWAGRTNLNDTSIGIEIVN--LATEHGGIFNFPPYPENQIAAVKQLAANIL 130
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+ H+DIAP K DPGP FPW +LY D GIGAW PD T E ++F
Sbjct: 131 QRYPDISPVNVVAHSDIAPTRKSDPGPKFPWQELYHD-GIGAWYDPD--TKEKFTQQFT- 186
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
P K D L YGY+++I N + +IRAF+ HF P+ +I E
Sbjct: 187 QHGLPAKTD---ILSHFSTYGYDISIANNDDGYQHLIRAFQLHFR----PDNYQGNIDIE 239
Query: 264 DMFWAWALVAKY 275
+ALV KY
Sbjct: 240 TAAILYALVEKY 251
>gi|197262621|ref|ZP_03162695.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197240876|gb|EDY23496.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 276
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF P R E
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHF----RPARWNGIADAE 261
Query: 264 DMFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 262 TQAIAEALLEKYGQ 275
>gi|392978309|ref|YP_006476897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392324242|gb|AFM59195.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 276
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 130/253 (51%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I P GK + Q+VP+N A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPANPPA--PDGKPRIWQLVPENELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR +N S+GI L N G G K ++ PF+ QI L L KDI+
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRGWQKTAGVK----HFTPFETAQIAALVPLAKDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ IKP+ V+ H+DIAP K DPGPLFPW +L + GIGAW PD V +
Sbjct: 154 ARYNIKPENVVAHSDIAPQRKDDPGPLFPWREL-AEQGIGAW--PDASRVAF----YMNG 206
Query: 209 RPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTED 264
RP + +D L+LL YGY+V T ++ +I F+ HF P+ E
Sbjct: 207 RPRYQAVDTAALLDLLARYGYDVPANSTPAQQKRIIMVFQMHF----RPQLWNGVADVET 262
Query: 265 MFWAWALVAKYGS 277
M A AL+ KYG
Sbjct: 263 MAIAEALLEKYGQ 275
>gi|283832476|ref|ZP_06352217.1| N-acetylmuramoyl-L-alanine amidase family protein [Citrobacter
youngae ATCC 29220]
gi|291072135|gb|EFE10244.1| N-acetylmuramoyl-L-alanine amidase family protein [Citrobacter
youngae ATCC 29220]
Length = 276
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 131/268 (48%), Gaps = 27/268 (10%)
Query: 20 EKNRNHYDSRDGMS-----VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
+KN D+R +K L++HYT +F + T SSHY+I
Sbjct: 25 DKNGYQLDTRRQAQAAYPRIKVLVIHYTADDFDASLATLTDKNV----SSHYLIPAVPPL 80
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFD 133
Y ++ Q+VP+N AWHAGI WR +N SIGI L N G +K T Y+ PF+
Sbjct: 81 YHGKPRIWQLVPENDLAWHAGISFWRGATRINDTSIGIELENRG--WQKSAGTKYFAPFE 138
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI L L KDI++++ IKPQ V+ H D+AP K DPGPLFPW +L GIGAW P
Sbjct: 139 PAQIQALIPLAKDIIARYDIKPQNVVAHADVAPQRKDDPGPLFPWKELAAQ-GIGAW--P 195
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSA 249
D V + P P ++ L+LL YGY V T ++ VI AF+ HF
Sbjct: 196 DAQRVAFYLAGRAPHAP----VETASLLDLLSRYGYEVKPDMTPREQQRVIMAFQMHF-- 249
Query: 250 NQNPERIYADITTEDMFWAWALVAKYGS 277
P E A AL+ KYG
Sbjct: 250 --RPTLWNGVADAETQAIAEALLEKYGQ 275
>gi|294636979|ref|ZP_06715301.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Edwardsiella tarda
ATCC 23685]
gi|451967103|ref|ZP_21920349.1| N-acetylmuramoyl-L-alanine amidase AmiD [Edwardsiella tarda NBRC
105688]
gi|291089807|gb|EFE22368.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Edwardsiella tarda
ATCC 23685]
gi|451314035|dbj|GAC65711.1| N-acetylmuramoyl-L-alanine amidase AmiD [Edwardsiella tarda NBRC
105688]
Length = 282
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 128/252 (50%), Gaps = 30/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+YL++HYT +FA + T + S+HY++ + + V Q+VP++ AWH
Sbjct: 44 VRYLVIHYTAEDFASSLKVLTDEQV----SAHYLVPAQPPQRQGKPVVWQLVPESRSAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG+ WR LN SIGI + N G +R T +YPF QI + L +DIV
Sbjct: 100 AGVSYWRGQTRLNDNSIGIEIENPG-----YRRTANGIVWYPFSAQQIAAVRALSRDIVR 154
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I P V+GH DIAP K+DPGPLFPW L + G+GAW PD V A ++++ +
Sbjct: 155 RYHIAPPDVVGHMDIAPQRKVDPGPLFPWA-LLAEQGVGAW--PDAARVRAYRQRYQASP 211
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTED 264
P L R + L +GY + T R VI AF+ H+ P + E
Sbjct: 212 PGVAYLQRRLAL-----WGYQIAATGINDAASRRVIAAFQMHY----RPTDFRGEADAET 262
Query: 265 MFWAWALVAKYG 276
AL+AKYG
Sbjct: 263 CAIVDALLAKYG 274
>gi|167567115|ref|ZP_02360031.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
oklahomensis EO147]
gi|167573261|ref|ZP_02366135.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
oklahomensis C6786]
Length = 301
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 28/232 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVIQI 84
DSR V+ L+LHYT + A + + S+HY++ + +GK +V +
Sbjct: 29 DSR----VRTLVLHYTAQSLARSVALLIDPK--RPASAHYLVPDAADDGKRF---RVFAL 79
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV----VGEKFRSTNYYPFDENQIHTL 140
VP+ RAWHAGI W+ +R LN+ SIGI +VN G + F + Q+ +
Sbjct: 80 VPELSRAWHAGISYWQGERLLNASSIGIEIVNTGFPEADENAPLMQRRWSSFPDAQMSVV 139
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DIV++ I PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW PD + VE
Sbjct: 140 GKLAADIVARHGIPPQKVVGHSDIAPGRKLDPGPLFPWQTLYEQYGVGAW--PDAIAVE- 196
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT---NKRS--VIRAFKTHF 247
++ P+ R D L AYGY+ T ++R+ VI AF+ HF
Sbjct: 197 ---YYRACHPFRR--DVAELQAKLLAYGYDTPQTGVLDERTTNVIAAFQMHF 243
>gi|407894321|ref|ZP_11153351.1| anhydro-N-acetylmuramyl-tripeptide amidase [Diplorickettsia
massiliensis 20B]
Length = 246
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 22/217 (10%)
Query: 36 YLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
YL+LHYT N + T+ A S+HY++ E + K+ Q+V ++ RAWHAG
Sbjct: 6 YLVLHYTAANCKSSLNQLTNPNAQV--SAHYLVPETPIE--EENKIFQLVDESKRAWHAG 61
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ W++ LN SIGI +VN G E + YYPF + QI + L K IV +++ P
Sbjct: 62 VSTWQKRSGLNDSSIGIEIVNLGYKDESGQR-QYYPFPDYQIDCVIALAKPIVEHYQLHP 120
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
++ H DIAPG K+DPGPLFPW KLY + GIGAW + ++A + L
Sbjct: 121 TCIVAHGDIAPGRKVDPGPLFPWKKLY-EAGIGAWYDEHALDLKA-----------HQTL 168
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
D + + L+ YGY + +T K ++V+ AF+ HF
Sbjct: 169 DIALLQKNLRTYGYPIELTGKLDMQTKNVVCAFQMHF 205
>gi|221197832|ref|ZP_03570878.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD2M]
gi|221204610|ref|ZP_03577627.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD2]
gi|221175467|gb|EEE07897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD2]
gi|221181764|gb|EEE14165.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD2M]
Length = 310
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 128/254 (50%), Gaps = 26/254 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ V Q+VP
Sbjct: 61 DSR----IRFLVMHYTESDEAKSLRTLTGDTV----SVHYVVPAHPRSERGQPVVYQLVP 112
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ W++ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 113 EAQRAWHAGVSAWQQTTELNAASIGIENVNRGPLDPQQRT--WQPYPPEQVDALIRLSKD 170
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 171 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWRAL-AQAGVGAW--PDDATVAARLAGRD 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P P +D L YGY+V I T R V AF+ HF P D
Sbjct: 228 PHAP----VDVRELQAKLARYGYDVPIDGVLDTRTRRVFSAFQMHF----RPSDYAGDAD 279
Query: 262 TEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 280 AETDAIAQALLDKY 293
>gi|421899084|ref|ZP_16329450.1| n-acetylmuramoyl-l-alanine amidase protein [Ralstonia solanacearum
MolK2]
gi|206590290|emb|CAQ37251.1| n-acetylmuramoyl-l-alanine amidase protein [Ralstonia solanacearum
MolK2]
Length = 345
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 130/240 (54%), Gaps = 36/240 (15%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG---KVIQ 83
DSR V+ L+LHYT A I T + SSHY++ + GG +V
Sbjct: 64 DSR----VRTLVLHYTAETLADSIALLTDPQKEV--SSHYLVPDAAD----GGERFRVYA 113
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+VP+ RAWHAG+ W+ +R LN+ ++GI +VN G + + +YP+ + QI
Sbjct: 114 LVPEAGRAWHAGVSYWQGERMLNASTVGIEVVNLGFPAQDKDAPLVNRRWYPYPDAQIAV 173
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L D+V++ I+PQ V+GH+DIAPG K+DPGPLFPW LY YG+GAW E
Sbjct: 174 VGRLAADVVARHGIRPQKVVGHSDIAPGRKLDPGPLFPWKTLYEQYGVGAWPE-----AE 228
Query: 200 AIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
AI ++ +P+ RG L L L AYGY+ T +++ AF+ HF + Q
Sbjct: 229 AI-GYYRNNQPF-----RGDILALQAKLLAYGYDTPQTGVLDAQTVNIVAAFQMHFRSAQ 282
>gi|424798986|ref|ZP_18224528.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 696]
gi|423234707|emb|CCK06398.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 696]
Length = 231
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNMRAW 92
L++HYT +F + T SSHY+I +K GK + + Q+VP+ AW
Sbjct: 2 LVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQKSGKPV----IWQLVPERELAW 53
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
HAG+ WR LN S+GI L N G + G+K Y+PF QI L L +DI+
Sbjct: 54 HAGVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDIIQ 109
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P
Sbjct: 110 RYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPYT 166
Query: 210 PYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P +D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 167 P----VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQSE 218
Query: 266 FWAWALVAKYGS 277
A AL+ KYG
Sbjct: 219 AIAEALLEKYGQ 230
>gi|429090167|ref|ZP_19152899.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter universalis NCTC
9529]
gi|426509970|emb|CCK18011.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter universalis NCTC
9529]
Length = 231
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 125/250 (50%), Gaps = 30/250 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRAWHA 94
L++HYT +F + T SSHY+I + GGK + Q+VP+ AWHA
Sbjct: 2 LVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKPVIWQLVPERELAWHA 55
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
G+ WR LN S+GI L N G + G+K Y+PF QI L L +DI+ ++
Sbjct: 56 GVSFWRGATRLNDTSVGIELENYGYRKIGGQK----QYFPFSPPQIAVLSKLARDIIQRY 111
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
+I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P P
Sbjct: 112 QIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPYAP- 167
Query: 212 PRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
+D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 168 ---VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQSEAI 220
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 221 AGALLEKYGQ 230
>gi|17546515|ref|NP_519917.1| N-acetylmuramoyl-L-alanine amidase [Ralstonia solanacearum GMI1000]
gi|17428813|emb|CAD15498.1| putative n-acetylmuramoyl-l-alanine amidase protein [Ralstonia
solanacearum GMI1000]
Length = 343
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 40/264 (15%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG---KVIQ 83
DSR V+ L+LHYT + A I + T + SSHY++ + GG ++
Sbjct: 63 DSR----VRTLVLHYTAESLADSIASLTDPQKQV--SSHYLVPDAAN----GGERFRIYS 112
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+ P++ RAWHAG+ W+ +R LN+ S+GI +VN G + + +YP+ + QI
Sbjct: 113 LAPESRRAWHAGVSYWQGERMLNASSVGIEVVNLGFPAQDGNAPLMNRRWYPYPDAQIAV 172
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L DIV++ I P+ V+GH DIAPG K+DPGPLFPW LY +GIGAW E
Sbjct: 173 VGRLAADIVARHAILPRKVVGHADIAPGRKLDPGPLFPWKTLYEQFGIGAWPE-----AE 227
Query: 200 AIVRKFKPARPYPRKLDRGIFLEL---LKAYGYN-----VTITNKRSVIRAFKTHFSANQ 251
AI ++ +P+ RG EL L AYGY+ V T +V+ AF+ HF
Sbjct: 228 AI-HYYQSHQPF-----RGNVAELQAKLLAYGYDTPQTGVLDTQTINVVAAFQMHF---- 277
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P+R E AL+ KY
Sbjct: 278 RPDRYDGAPDIETAAILDALLEKY 301
>gi|366159074|ref|ZP_09458936.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia sp. TW09308]
Length = 231
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 125/246 (50%), Gaps = 22/246 (8%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWHAGI
Sbjct: 2 LVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI 57
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFKIKP 155
WR +N SIGI L N G +K Y+ PF+ QI L L K+I++++ IKP
Sbjct: 58 SAWRGATRINDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKEIIARYHIKP 115
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P +
Sbjct: 116 ENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDASRVSFYLAGRAPHTP----V 168
Query: 216 DRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWAL 271
+ LELL YGY+V T ++ VI AF+ HF P + E A AL
Sbjct: 169 ETASLLELLARYGYDVKPEMTPREQQRVIMAFQMHF----RPTLYNGEADAETQAIAEAL 224
Query: 272 VAKYGS 277
+ KYG
Sbjct: 225 LEKYGQ 230
>gi|260597271|ref|YP_003209842.1| N-acetylmuramoyl-L-alanine amidase amiD [Cronobacter turicensis
z3032]
gi|260216448|emb|CBA29568.1| N-acetylmuramoyl-L-alanine amidase amiD [Cronobacter turicensis
z3032]
Length = 264
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 127/255 (49%), Gaps = 34/255 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+K L++HYT +F + T SSHY+I +K GK + + Q+VP+
Sbjct: 32 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQKSGKPV----IWQLVPERE 83
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKD 146
AWHAG+ WR LN S+GI L N G + G+K Y+PF QI L L +D
Sbjct: 84 LAWHAGVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSHLARD 139
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I+ +++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V +
Sbjct: 140 IIRRYQIAPQNVVAHADIAPQRKDDPGPLFPWRALAAQ-GIGAW--PDEQRVAFYLAGRN 196
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITT 262
P P +D L+LL YGY VT + VI+AF+ HF P R
Sbjct: 197 PYAP----VDETTLLDLLTRYGYEVTPQMSEAQRTRVIQAFQMHF----RPARYDGLPDA 248
Query: 263 EDMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 249 QSEAIAEALLEKYGQ 263
>gi|411010660|ref|ZP_11386989.1| N-acetylmuramoyl-L-alanine amidase [Aeromonas aquariorum AAK1]
Length = 299
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 134/264 (50%), Gaps = 27/264 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGGK 80
N H + + +LILHYT + + T AH + S+HY+I + + LP
Sbjct: 48 NNEHQSASQNERIAFLILHYTDEDDERSLRLLTEP-AHQV-SAHYLIPRDTHERPLP--- 102
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQ 136
V Q+VPDN RAWHAG +W + LN+ S+GI +VN G + + P+ + Q
Sbjct: 103 VYQLVPDNRRAWHAGRSRWHQYTGLNASSLGIEIVNLGYPPQDELLPAHQRRWQPYTQAQ 162
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I LG L +++V +++I P VL H+D+AP K DPGP FPW +L L YG+GAW PDE
Sbjct: 163 IAALGALTRELVERYQIPPTQVLAHSDVAPERKQDPGPHFPWRELALHYGVGAW--PDET 220
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
+ + ++ PA D + + L YGY V + R+ +RAF+ HF
Sbjct: 221 RLAELRQQPAPA------WDAFGWQQRLARYGYGVAPSGSWDEQSRAALRAFQLHF---- 270
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P + + E AL+ +Y
Sbjct: 271 RPALVSGEADGESQAILTALLERY 294
>gi|383317125|ref|YP_005377967.1| negative regulator of beta-lactamase expression [Frateuria aurantia
DSM 6220]
gi|379044229|gb|AFC86285.1| negative regulator of beta-lactamase expression [Frateuria aurantia
DSM 6220]
Length = 299
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 26/226 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI---SEKEGKYLPGGKVIQIVPDNMR 90
V++L+LHYT + H + TS +A S+HY++ S +G G +V ++VP++ R
Sbjct: 53 VRFLVLHYTAGDLPHSMDLLTSPQAQV--SAHYLVPGHSPVQG----GFRVFRLVPESER 106
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGV----VGEKFRSTNYYPFDENQIHTLGLLGKD 146
AWHAG W+ +N+ SIGI +VN G G + PF Q+ +G L ++
Sbjct: 107 AWHAGNSHWQGSAQINAGSIGIEIVNIGYPPEDAGLPLEQRRWAPFTPQQMQAVGNLARE 166
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV +++I P V+GH+DIAPG K+DPGPLFPW LY Y +GAW PD TV +
Sbjct: 167 IVQRYRIAPDRVIGHSDIAPGRKVDPGPLFPWEWLYRMYAVGAW--PDPATVAWYRHQ-- 222
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+P D + L YGY V ++ + R V+ AF+ H+
Sbjct: 223 ----HPWHGDIRFLQQALADYGYAVPVSGELDSATRDVVAAFQMHY 264
>gi|76817355|ref|YP_335683.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1710b]
gi|126456376|ref|YP_001076050.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106a]
gi|167724152|ref|ZP_02407388.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei DM98]
gi|167850127|ref|ZP_02475635.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei B7210]
gi|242311523|ref|ZP_04810540.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106b]
gi|254193838|ref|ZP_04900270.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei S13]
gi|254262718|ref|ZP_04953583.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1710a]
gi|403523280|ref|YP_006658849.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
BPC006]
gi|76581828|gb|ABA51302.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 1710b]
gi|126230144|gb|ABN93557.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106a]
gi|169650589|gb|EDS83282.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei S13]
gi|242134762|gb|EES21165.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1106b]
gi|254213720|gb|EET03105.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 1710a]
gi|403078347|gb|AFR19926.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei BPC006]
Length = 341
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 34/237 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE--GKYLPGGKVI 82
+ DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V
Sbjct: 67 NQDSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVY 117
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+
Sbjct: 118 ALVPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMA 177
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L DI ++ +I PQ V+GH+DIAPG +DPGPLFPW L+ YG+GAW PD + V
Sbjct: 178 VVGRLAADIAARHEIPPQKVVGHSDIAPGRNLDPGPLFPWRMLHEQYGVGAW--PDAIAV 235
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
E ++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 236 E----YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|167743129|ref|ZP_02415903.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 14]
Length = 341
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 127/235 (54%), Gaps = 34/235 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVIQI 84
DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V +
Sbjct: 69 DSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVYAL 119
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHTL 140
VP+ RAWHAG+ W+ +R L++ SIG+ +VN G + PF + Q+ +
Sbjct: 120 VPETNRAWHAGVSYWQGERLLDASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMAVV 179
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + VE
Sbjct: 180 GRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAVE- 236
Query: 201 IVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 237 ---YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|429109686|ref|ZP_19171456.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter malonaticus 507]
gi|426310843|emb|CCJ97569.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter malonaticus 507]
Length = 231
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 125/250 (50%), Gaps = 30/250 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRAWHA 94
L++HYT +F + T SSHY+I + GGK + Q+VP+ AWHA
Sbjct: 2 LVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKPVIWQLVPERELAWHA 55
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
G+ WR LN S+GI L N G + G+K Y+PF QI L L +DI+ ++
Sbjct: 56 GVSFWRGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDIIQRY 111
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
+I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P P
Sbjct: 112 QIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPYAP- 167
Query: 212 PRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
+D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 168 ---VDETTLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQSEAI 220
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 221 AGALLEKYGQ 230
>gi|421887294|ref|ZP_16318454.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379983010|emb|CCF90727.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 276
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWSG--IADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|242239700|ref|YP_002987881.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya dadantii Ech703]
gi|242131757|gb|ACS86059.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya dadantii Ech703]
Length = 280
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 130/261 (49%), Gaps = 25/261 (9%)
Query: 21 KNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK 80
K R+H SR V++L++HYTV +F + T + S+HY+I Y
Sbjct: 39 KARSH-SSR----VQFLVIHYTVGSFPQALQVLTEDEV----SAHYLIPAVPPLYHSKPM 89
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
Q+VP++ AWHAG+ WR +LN +SIGI L N G + + P+ +QI +
Sbjct: 90 AWQLVPESQSAWHAGVSHWRGYSHLNQVSIGIELENPGQ-RDTASGAEWTPYPASQIALV 148
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L +DI+ ++ I P V+ H+DIAP K DPGPLFPW L + GIGAW P+ +
Sbjct: 149 ADLARDIIRRYAIAPPNVVAHSDIAPQRKTDPGPLFPWQAL-AEQGIGAWPDPERVAF-- 205
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVT----ITNKRSVIRAFKTHFSANQNPERI 256
+ R +DR LE L YGY VT ++ VI AF+ HF P+R
Sbjct: 206 ----YLQGRAPHAAVDRRTLLEKLGRYGYEVTEGMSARQQQRVIAAFQMHF----RPQRA 257
Query: 257 YADITTEDMFWAWALVAKYGS 277
E AL+ KYG+
Sbjct: 258 DGQPDAETDAMVDALLEKYGA 278
>gi|389684136|ref|ZP_10175467.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
O6]
gi|388552475|gb|EIM15737.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
O6]
Length = 294
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 34/251 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVIQIVPDNMRA 91
+++L+LHYT + A T R+ ++ S++Y+I + K K LP Q+V D+ R+
Sbjct: 50 IRFLVLHYTALDQAQSFETLT--RSEHV-SANYLIPDRPKTHKGLPVAD--QLVDDHDRS 104
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG-------VVGEKFRSTNYYPFDENQIHTLGLLG 144
WHAG+ +W+ NLN S+GI +VN G ++GE P++E QI L L
Sbjct: 105 WHAGVSQWKNRSNLNDTSLGIEIVNAGWDQDTGQLLGE--------PYNEQQIELLISLA 156
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+D+VS++ I+P ++GH+DIAPG K+DPGP FPW +L + GIGAW PDE T++ + +
Sbjct: 157 RDLVSKYDIQPTDIVGHSDIAPGRKIDPGPFFPWKRL-AEAGIGAW--PDERTLDDYLAR 213
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTED 264
F + P ++ + L+ YGY V+ AF+ F NQ DI T
Sbjct: 214 FSVSPPSMVQVTKA-----LQTYGYGYLDQQPERVVEAFQMRF--NQENVSGIVDIRTAA 266
Query: 265 MFWAWALVAKY 275
+ ++L+ KY
Sbjct: 267 IL--FSLIDKY 275
>gi|168819941|ref|ZP_02831941.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|238913411|ref|ZP_04657248.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|409249340|ref|YP_006885172.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|205343255|gb|EDZ30019.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320085168|emb|CBY94955.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 276
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWSG--IADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|440288315|ref|YP_007341080.1| negative regulator of beta-lactamase expression [Enterobacteriaceae
bacterium strain FGI 57]
gi|440047837|gb|AGB78895.1| negative regulator of beta-lactamase expression [Enterobacteriaceae
bacterium strain FGI 57]
Length = 276
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 132/250 (52%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK L++HYT +F + T SSHY+I + + ++ Q+VP++ AWH
Sbjct: 44 VKVLVIHYTADDFDVSLATLTDKHV----SSHYLIPDVPPVHNGKPRIWQLVPEDKLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N S+GI L N G +K ++ PF +QI L L KDI++++
Sbjct: 100 AGISFWRGATRINDTSVGIELENRG--WQKTADVKHFAPFSPSQIEALIPLAKDIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+PQ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P +P
Sbjct: 158 IQPQNVVAHADIAPQRKDDPGPLFPWQQLAAQ-GIGAW--PDSQRVAFYLNGRSPYQP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFS-ANQNPERIYADITTEDMFW 267
+D + L+LL YGY V T ++ VI AF+ HF A N AD T+ +
Sbjct: 213 --VDTAVLLDLLSRYGYEVTPDMTTVQQKRVIMAFQMHFRPALWNG---VADAQTQAI-- 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 AEALLEKYGQ 275
>gi|420368226|ref|ZP_14868991.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 1235-66]
gi|391322430|gb|EIQ79113.1| N-acetylmuramoyl-L-alanine amidase AmiD [Shigella flexneri 1235-66]
Length = 276
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAVPPLYHGKPRIWQLVPEKDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N SIGI L N G +K T Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISFWRGATRINDTSIGIELENRG--WQKSAGTKYFAPFEPAQIQALIPLAKDIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKPQ V+ H D+AP K DPGPLFPW K+ + GIGAW PD V + P P
Sbjct: 158 IKPQNVVAHADVAPQRKDDPGPLFPW-KVLAEQGIGAW--PDAQRVAFYLAGRAPHSP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ L+LL YGY V T ++ VI AF+ HF P E A
Sbjct: 213 --VETASLLDLLSRYGYEVKSDMTPREQQRVIMAFQMHF----RPTLWNGVADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|416505261|ref|ZP_11733695.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523180|ref|ZP_11740927.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416560379|ref|ZP_11761208.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570248|ref|ZP_11765909.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|418510982|ref|ZP_13077252.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|363550827|gb|EHL35153.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363556195|gb|EHL40410.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363575054|gb|EHL58913.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575532|gb|EHL59382.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366085231|gb|EHN49121.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 276
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTTREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|188534292|ref|YP_001908089.1| N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia tasmaniensis
Et1/99]
gi|188029334|emb|CAO97211.1| Probable N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia
tasmaniensis Et1/99]
Length = 280
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 140/284 (49%), Gaps = 36/284 (12%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
P + GY++D + + +R +K L++HYT +F+ + T
Sbjct: 24 PQGLQPQHGYMVD------TRQEAFGARP--RIKVLVIHYTAGDFSRSLNVLTDRSV--- 72
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY++ KY V ++VP++M AWHAG+ WR LN SIGI L N G
Sbjct: 73 -SAHYLLPAAPPKYDGQPLVWRLVPESMLAWHAGVSFWRGATRLNDTSIGIELENAG--- 128
Query: 122 EKFRSTN----YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP 177
++ TN + PF + Q+ L L +DIV ++ I PQ V+ H+DIAP K DPGPLFP
Sbjct: 129 --WKRTNAGVDWAPFPDGQMAALLPLMRDIVQRYGISPQDVVAHSDIAPLRKQDPGPLFP 186
Query: 178 WGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT--- 234
W L G+GAW D + + RP ++ D+ L LL YGY V
Sbjct: 187 WHWLAAQ-GVGAWPDDDRVAF------YLAGRPVNQRADKVKLLGLLATYGYEVPTQMQP 239
Query: 235 -NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
++++I AF+ HF R AD TE + A ALV KYG
Sbjct: 240 YQQQALITAFQMHFRPTDY--RGVADAETEAI--AAALVEKYGE 279
>gi|401762968|ref|YP_006577975.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400174502|gb|AFP69351.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 276
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 130/251 (51%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I K P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDKNV----SSHYLIPAKPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQ 150
WHAGI WR +N S+GI L N G +K ++ PF+ QI L L KDI+++
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRG--WQKSAGVKHFTPFEPAQIAALVPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I+P+ V+ H+DIAP K DPGPLFPW +L GIGAW P A V + RP
Sbjct: 156 YNIRPENVVAHSDIAPQRKDDPGPLFPWRQL-AQQGIGAWPDP------ARVAFYINGRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ +D L+LL YGY+V T ++ +I F+ HF P+ E M
Sbjct: 209 RFQAVDTAALLDLLARYGYDVPANSTPAQQKRIIMVFQMHF----RPDLWNGVADVETMA 264
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 265 IAEALLEKYGQ 275
>gi|377821046|ref|YP_004977417.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. YI23]
gi|357935881|gb|AET89440.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. YI23]
Length = 274
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 127/254 (50%), Gaps = 28/254 (11%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A I T + S HYV+ + V Q+VP
Sbjct: 41 DSR----IRFLVMHYTEIDEARSIEVLTGDAV----SVHYVVPDAPRIERSKPVVFQLVP 92
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN+ SIGI VN G +G+ + P+ QI L L +D
Sbjct: 93 ESQRAWHAGVSAWQGATELNASSIGIENVNLGPIGDG----KWQPYPPAQIEALIALSRD 148
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW LY D G+GAW PD+ V A +
Sbjct: 149 IVARYAIPPTRVVGHSDIAPQRKIDPGPLFPWRALY-DAGVGAW--PDDANVAAHLAGRD 205
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P D E LK YGY+V R V AF+ HF P +
Sbjct: 206 KRVP----ADVRALQEKLKRYGYDVATDGVLDEKTRRVFSAFQMHF----RPSDYAGNAD 257
Query: 262 TEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 258 AESDAIAQALLDKY 271
>gi|56414016|ref|YP_151091.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362939|ref|YP_002142576.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128273|gb|AAV77779.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197094416|emb|CAR59932.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 276
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWQMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|420253656|ref|ZP_14756701.1| negative regulator of beta-lactamase expression [Burkholderia sp.
BT03]
gi|398051650|gb|EJL43967.1| negative regulator of beta-lactamase expression [Burkholderia sp.
BT03]
Length = 290
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 25/235 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI----SEKEGKYLP 77
+ +H +++L++HYT + + T H S+HYVI EK G+ +
Sbjct: 35 DTSHTAQYQDTRIRFLVMHYTEIDEKQSLDVLT----HEQVSAHYVIPDHPKEKNGEPI- 89
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
+ Q+VP++ RAWHAG+ W+ LN+ SIGI VN G + E + + P+ Q+
Sbjct: 90 ---IWQLVPESQRAWHAGLSSWQGTTELNAASIGIENVNLGPI-ETPQGRTWQPYPPEQV 145
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ + L KDIV+++ I P V+GH+DIAP K+DPGPLFPW +LY D G+GAW PD+ T
Sbjct: 146 NAMIRLAKDIVTRYNIPPTRVVGHSDIAPQRKIDPGPLFPWKQLY-DAGVGAW--PDDAT 202
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
V + P P D + L YGY V + R V AF+ HF
Sbjct: 203 VAKELAGRDPHAP----TDVRALQQKLARYGYEVATDGVLNDSTRRVFAAFQMHF 253
>gi|167898738|ref|ZP_02486139.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 7894]
Length = 341
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 34/237 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE--GKYLPGGKVI 82
+ DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V
Sbjct: 67 NQDSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVY 117
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ SI + +VN G + PF + Q+
Sbjct: 118 ALVPETNRAWHAGVSYWQGERLLNASSIDVEIVNTGFPDADENAPLMRRRWAPFPDAQMA 177
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L DI ++ +I PQ V+GH+DIAPG K+DPGPLFPW L+ YG+GAW PD + V
Sbjct: 178 VVGRLAADIAARHEIPPQKVVGHSDIAPGRKLDPGPLFPWRMLHEQYGVGAW--PDAIAV 235
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
E ++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 236 E----YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|167992147|ref|ZP_02573245.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168240775|ref|ZP_02665707.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168466512|ref|ZP_02700374.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194448017|ref|YP_002044924.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|374981599|ref|ZP_09722923.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444370|ref|YP_005232002.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378449278|ref|YP_005236637.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698828|ref|YP_005180785.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378988278|ref|YP_005251442.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379700099|ref|YP_005241827.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495674|ref|YP_005396363.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386590798|ref|YP_006087198.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|417364546|ref|ZP_12137440.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|418763530|ref|ZP_13319645.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765340|ref|ZP_13321428.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769416|ref|ZP_13325446.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773499|ref|ZP_13329483.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779549|ref|ZP_13335449.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418784876|ref|ZP_13340712.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418803583|ref|ZP_13359201.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419728037|ref|ZP_14255005.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736830|ref|ZP_14263656.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419740498|ref|ZP_14267224.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742466|ref|ZP_14269139.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419790958|ref|ZP_14316624.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794463|ref|ZP_14320075.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421569139|ref|ZP_16014843.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573508|ref|ZP_16019144.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580035|ref|ZP_16025596.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584825|ref|ZP_16030332.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422025044|ref|ZP_16371506.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422030067|ref|ZP_16376301.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427547379|ref|ZP_18926815.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427563400|ref|ZP_18931581.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427582332|ref|ZP_18936337.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427604684|ref|ZP_18941180.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427629479|ref|ZP_18946083.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427652712|ref|ZP_18950849.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660280|ref|ZP_18955796.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665408|ref|ZP_18960554.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|194406321|gb|ACF66540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|195631059|gb|EDX49645.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205329661|gb|EDZ16425.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205340046|gb|EDZ26810.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261246149|emb|CBG23952.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992656|gb|ACY87541.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301157476|emb|CBW16966.1| hypothetical N-acetylmuramoyl-L-alanine amidase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|321223255|gb|EFX48324.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129198|gb|ADX16628.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987825|gb|AEF06808.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|353596869|gb|EHC53743.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|380462495|gb|AFD57898.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|381290504|gb|EIC31769.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381294801|gb|EIC35930.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381301619|gb|EIC42675.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381313761|gb|EIC54540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383797842|gb|AFH44924.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612701|gb|EIW95170.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392614765|gb|EIW97209.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392732998|gb|EIZ90204.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392739712|gb|EIZ96844.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741019|gb|EIZ98132.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392752121|gb|EJA09063.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392753580|gb|EJA10509.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392753873|gb|EJA10794.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392772678|gb|EJA29378.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|402520514|gb|EJW27856.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527493|gb|EJW34754.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527767|gb|EJW35027.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402530797|gb|EJW38011.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414022381|gb|EKT05867.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022444|gb|EKT05929.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024007|gb|EKT07412.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414036107|gb|EKT18950.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414037535|gb|EKT20304.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414040694|gb|EKT23302.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414050723|gb|EKT32885.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414051957|gb|EKT34035.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414056199|gb|EKT38037.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414061148|gb|EKT42591.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 276
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|62179456|ref|YP_215873.1| aminidase [Salmonella enterica subsp. enterica serovar Choleraesuis
str. SC-B67]
gi|168263585|ref|ZP_02685558.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224582744|ref|YP_002636542.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375113779|ref|ZP_09758949.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|62127089|gb|AAX64792.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205347755|gb|EDZ34386.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224467271|gb|ACN45101.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|322713925|gb|EFZ05496.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 276
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|421450787|ref|ZP_15900157.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396065283|gb|EJI73660.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
Length = 276
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|16759804|ref|NP_455421.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142423|ref|NP_805765.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|167550397|ref|ZP_02344154.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|194444375|ref|YP_002040132.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|198244737|ref|YP_002214858.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205352143|ref|YP_002225944.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856326|ref|YP_002242977.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213052704|ref|ZP_03345582.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213428035|ref|ZP_03360785.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213647849|ref|ZP_03377902.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213852494|ref|ZP_03382026.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289825012|ref|ZP_06544375.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|375118344|ref|ZP_09763511.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|375122936|ref|ZP_09768100.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|378960166|ref|YP_005217652.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|418808415|ref|ZP_13363970.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812572|ref|ZP_13368095.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815793|ref|ZP_13371288.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820005|ref|ZP_13375440.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418825297|ref|ZP_13380600.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418833320|ref|ZP_13388250.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835244|ref|ZP_13390140.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842159|ref|ZP_13396972.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843119|ref|ZP_13397918.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850050|ref|ZP_13404769.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418853408|ref|ZP_13408097.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418857132|ref|ZP_13411762.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861840|ref|ZP_13416390.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869002|ref|ZP_13423443.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|421358066|ref|ZP_15808373.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364706|ref|ZP_15814937.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367528|ref|ZP_15817721.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370288|ref|ZP_15820454.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377733|ref|ZP_15827823.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382437|ref|ZP_15832484.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386173|ref|ZP_15836188.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392062|ref|ZP_15842023.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393098|ref|ZP_15843045.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399006|ref|ZP_15848910.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404915|ref|ZP_15854751.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408050|ref|ZP_15857856.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411138|ref|ZP_15860906.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419151|ref|ZP_15868847.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421431|ref|ZP_15871099.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421425393|ref|ZP_15875029.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432324|ref|ZP_15881900.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434517|ref|ZP_15884066.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438893|ref|ZP_15888387.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446448|ref|ZP_15895860.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|436639621|ref|ZP_20516224.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436795524|ref|ZP_20522344.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811686|ref|ZP_20530566.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816058|ref|ZP_20533609.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839206|ref|ZP_20537526.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851653|ref|ZP_20542252.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858415|ref|ZP_20546935.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865591|ref|ZP_20551558.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875235|ref|ZP_20557142.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436879075|ref|ZP_20559466.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884896|ref|ZP_20562294.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896711|ref|ZP_20569467.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436906690|ref|ZP_20575536.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911359|ref|ZP_20577188.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918564|ref|ZP_20581710.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930780|ref|ZP_20589005.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933019|ref|ZP_20589458.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942501|ref|ZP_20595447.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947910|ref|ZP_20598316.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963531|ref|ZP_20605808.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969859|ref|ZP_20608774.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436977563|ref|ZP_20612341.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995511|ref|ZP_20619236.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005262|ref|ZP_20622354.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022851|ref|ZP_20628716.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032154|ref|ZP_20631798.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041925|ref|ZP_20635830.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050149|ref|ZP_20640430.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055304|ref|ZP_20643447.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437068640|ref|ZP_20650771.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437077568|ref|ZP_20655467.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086911|ref|ZP_20660920.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088549|ref|ZP_20661586.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437112185|ref|ZP_20668568.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124124|ref|ZP_20673195.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134243|ref|ZP_20678667.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138113|ref|ZP_20680843.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147732|ref|ZP_20687014.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156136|ref|ZP_20692061.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161595|ref|ZP_20695531.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166326|ref|ZP_20697979.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437177604|ref|ZP_20704084.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437185440|ref|ZP_20709014.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437260889|ref|ZP_20717959.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437267108|ref|ZP_20721074.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276467|ref|ZP_20726476.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300312|ref|ZP_20733076.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437311215|ref|ZP_20735810.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437325751|ref|ZP_20740023.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336456|ref|ZP_20743063.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437383853|ref|ZP_20750558.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437420121|ref|ZP_20754498.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437448484|ref|ZP_20759226.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467921|ref|ZP_20764563.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437478789|ref|ZP_20767802.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489607|ref|ZP_20770392.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512783|ref|ZP_20777338.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437537498|ref|ZP_20781756.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437556078|ref|ZP_20784915.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437575481|ref|ZP_20790277.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437595241|ref|ZP_20795857.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437607007|ref|ZP_20800025.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437622021|ref|ZP_20804531.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437659076|ref|ZP_20812003.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437678599|ref|ZP_20817801.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437688667|ref|ZP_20819897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437704401|ref|ZP_20824706.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437734291|ref|ZP_20832204.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437748183|ref|ZP_20833690.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437803993|ref|ZP_20838708.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437955472|ref|ZP_20852222.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|438036860|ref|ZP_20855547.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438089664|ref|ZP_20860247.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104684|ref|ZP_20865948.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114147|ref|ZP_20869923.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445130742|ref|ZP_21381450.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445139759|ref|ZP_21384517.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152468|ref|ZP_21390851.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445177622|ref|ZP_21397744.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445236796|ref|ZP_21407134.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445248023|ref|ZP_21408529.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445327750|ref|ZP_21412750.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445346396|ref|ZP_21418766.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445367404|ref|ZP_21425531.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|25512000|pir||AC0608 probable N-acetylmuramoyl-L-alanine amidase STY0927 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502097|emb|CAD05333.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138053|gb|AAO69614.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|194403038|gb|ACF63260.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197939253|gb|ACH76586.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205271924|emb|CAR36767.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205324593|gb|EDZ12432.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|206708129|emb|CAR32422.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|326622611|gb|EGE28956.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|326627186|gb|EGE33529.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|374354038|gb|AEZ45799.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|392775992|gb|EJA32682.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392776603|gb|EJA33290.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392791160|gb|EJA47650.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392793021|gb|EJA49466.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392795892|gb|EJA52243.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392804062|gb|EJA60239.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392807484|gb|EJA63555.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392816270|gb|EJA72199.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392817257|gb|EJA73172.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392819256|gb|EJA75128.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392826669|gb|EJA82390.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392835342|gb|EJA90939.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837079|gb|EJA92650.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392837692|gb|EJA93262.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395982934|gb|EJH92128.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395986048|gb|EJH95212.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395989161|gb|EJH98296.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395998010|gb|EJI07048.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395998344|gb|EJI07376.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006840|gb|EJI15801.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396009742|gb|EJI18665.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396014792|gb|EJI23677.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396019349|gb|EJI28206.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396024762|gb|EJI33547.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029180|gb|EJI37919.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029450|gb|EJI38187.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036659|gb|EJI45318.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040746|gb|EJI49369.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046672|gb|EJI55255.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396050715|gb|EJI59237.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396057863|gb|EJI66333.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396060268|gb|EJI68714.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396062030|gb|EJI70443.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396072121|gb|EJI80436.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|434956770|gb|ELL50482.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434962324|gb|ELL55540.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964317|gb|ELL57339.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974174|gb|ELL66562.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434980514|gb|ELL72435.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434986955|gb|ELL78606.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990567|gb|ELL82117.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994826|gb|ELL86143.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996626|gb|ELL87942.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435007058|gb|ELL97915.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013078|gb|ELM03738.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015267|gb|ELM05824.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435016600|gb|ELM07126.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435025604|gb|ELM15735.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030562|gb|ELM20571.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032435|gb|ELM22379.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435042700|gb|ELM32417.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435044074|gb|ELM33772.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048780|gb|ELM38336.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056648|gb|ELM46019.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435058629|gb|ELM47950.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062953|gb|ELM52125.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435070776|gb|ELM59758.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435071602|gb|ELM60542.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076109|gb|ELM64905.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080090|gb|ELM68783.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435085189|gb|ELM73743.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095131|gb|ELM83468.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435095290|gb|ELM83608.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098646|gb|ELM86877.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103057|gb|ELM91160.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435103272|gb|ELM91367.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116584|gb|ELN04319.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435116863|gb|ELN04577.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435119722|gb|ELN07324.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435120478|gb|ELN08056.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435133835|gb|ELN20991.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435134050|gb|ELN21194.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435136915|gb|ELN23987.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435144652|gb|ELN31484.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435152984|gb|ELN39605.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435155284|gb|ELN41842.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435159493|gb|ELN45814.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163345|gb|ELN49481.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173825|gb|ELN59294.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435176260|gb|ELN61650.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178715|gb|ELN63912.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435183977|gb|ELN68923.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435192990|gb|ELN77493.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197525|gb|ELN81808.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201323|gb|ELN85235.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435201929|gb|ELN85793.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435209082|gb|ELN92460.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215370|gb|ELN98057.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435221608|gb|ELO03881.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230475|gb|ELO11781.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435231609|gb|ELO12838.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435239874|gb|ELO20307.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435241619|gb|ELO21961.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435245446|gb|ELO25533.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435251212|gb|ELO30890.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435254213|gb|ELO33616.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435256241|gb|ELO35586.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270128|gb|ELO48632.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435273294|gb|ELO51636.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435282412|gb|ELO60030.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286821|gb|ELO64067.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293072|gb|ELO69801.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435303103|gb|ELO79021.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435304929|gb|ELO80505.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|435312090|gb|ELO86083.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435316860|gb|ELO89943.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321980|gb|ELO94321.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435324916|gb|ELO96820.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435329171|gb|ELP00624.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444851500|gb|ELX76589.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444853057|gb|ELX78129.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444854259|gb|ELX79324.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444855877|gb|ELX80916.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444858939|gb|ELX83906.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878062|gb|ELY02190.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444880528|gb|ELY04602.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444882351|gb|ELY06317.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444890052|gb|ELY13422.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 276
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|304413491|ref|ZP_07394964.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Regiella insecticola
LSR1]
gi|304284334|gb|EFL92727.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Regiella insecticola
LSR1]
Length = 275
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V L+LHYT N I T + S+HY++ E K V+Q+V + RAWH
Sbjct: 42 VSSLVLHYTALNDEKSIKVLTQRQV----SAHYLVLEHPEKERGKPVVLQLVDEKARAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ WR NLN SIGI +VN G + F +YPF++ QI + L KDIV ++K+
Sbjct: 98 AGVSNWRGRSNLNDSSIGIEIVNLGYT-KTFFGKKWYPFNQQQIELITHLTKDIVKRYKL 156
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+ H+DIAP K DPGPLFPW L G+GAW PD E +V+K+ R
Sbjct: 157 DPTNVIAHSDIAPLRKSDPGPLFPWKGL-ASIGVGAW--PD----ENVVKKYIAHRDKYA 209
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+ L YGY + T + + VI AF+ HF P E A
Sbjct: 210 IASVSEIQKALAKYGYTIPQTGELDKETKRVISAFQMHF----RPADFSGTPDVETEAIA 265
Query: 269 WALVAKYGS 277
ALV KY S
Sbjct: 266 LALVEKYRS 274
>gi|161614841|ref|YP_001588806.1| hypothetical protein SPAB_02594 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168236839|ref|ZP_02661897.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194736394|ref|YP_002113987.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250448|ref|YP_002145847.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|204929996|ref|ZP_03221017.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|416421941|ref|ZP_11689845.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431458|ref|ZP_11695612.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441562|ref|ZP_11701774.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445338|ref|ZP_11704227.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454056|ref|ZP_11710059.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459268|ref|ZP_11713777.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467351|ref|ZP_11717368.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416480972|ref|ZP_11723028.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489802|ref|ZP_11726414.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416500374|ref|ZP_11731445.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416530415|ref|ZP_11744941.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416536497|ref|ZP_11748459.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546321|ref|ZP_11753807.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416578422|ref|ZP_11770542.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582360|ref|ZP_11772634.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593671|ref|ZP_11780077.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599398|ref|ZP_11783632.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604900|ref|ZP_11786521.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612548|ref|ZP_11791573.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416617991|ref|ZP_11794396.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416634330|ref|ZP_11802495.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416640920|ref|ZP_11805242.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650165|ref|ZP_11810273.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416658040|ref|ZP_11814098.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669803|ref|ZP_11819646.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416676202|ref|ZP_11821724.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416700627|ref|ZP_11829177.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707481|ref|ZP_11832579.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714779|ref|ZP_11838097.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716557|ref|ZP_11838904.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724807|ref|ZP_11845191.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730282|ref|ZP_11848533.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740442|ref|ZP_11854398.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416746471|ref|ZP_11857793.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416755700|ref|ZP_11862214.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760897|ref|ZP_11865105.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416767396|ref|ZP_11869869.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417389689|ref|ZP_12153417.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|418483781|ref|ZP_13052787.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491757|ref|ZP_13058265.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418493946|ref|ZP_13060406.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500097|ref|ZP_13066496.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501919|ref|ZP_13068295.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509736|ref|ZP_13076028.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418526757|ref|ZP_13092726.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418790753|ref|ZP_13346523.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791499|ref|ZP_13347258.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798851|ref|ZP_13354524.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|440764403|ref|ZP_20943431.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440769449|ref|ZP_20948407.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440770924|ref|ZP_20949852.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|452120900|ref|YP_007471148.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|161364205|gb|ABX67973.1| hypothetical protein SPAB_02594 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194711896|gb|ACF91117.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197214151|gb|ACH51548.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290079|gb|EDY29436.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204320990|gb|EDZ06191.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|322616368|gb|EFY13277.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619618|gb|EFY16493.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622686|gb|EFY19531.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628598|gb|EFY25385.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631535|gb|EFY28291.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637062|gb|EFY33765.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641739|gb|EFY38375.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644468|gb|EFY41008.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650071|gb|EFY46488.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654136|gb|EFY50459.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658051|gb|EFY54318.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663525|gb|EFY59727.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670261|gb|EFY66401.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671497|gb|EFY67619.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676853|gb|EFY72920.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682778|gb|EFY78797.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686457|gb|EFY82439.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323196089|gb|EFZ81252.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196765|gb|EFZ81909.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202956|gb|EFZ87990.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323211901|gb|EFZ96729.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215167|gb|EFZ99912.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222370|gb|EGA06748.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223886|gb|EGA08185.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229845|gb|EGA13968.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233070|gb|EGA17166.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240805|gb|EGA24847.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243122|gb|EGA27142.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248664|gb|EGA32592.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251665|gb|EGA35532.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257347|gb|EGA41045.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261935|gb|EGA45501.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267951|gb|EGA51430.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271982|gb|EGA55397.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353621198|gb|EHC71084.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|363550867|gb|EHL35192.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363564818|gb|EHL48859.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|366060322|gb|EHN24586.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366060756|gb|EHN25016.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063193|gb|EHN27413.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069564|gb|EHN33687.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076366|gb|EHN40404.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077831|gb|EHN41840.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366828348|gb|EHN55235.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205365|gb|EHP18880.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|392757066|gb|EJA13957.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765493|gb|EJA22279.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392771728|gb|EJA28442.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|436414537|gb|ELP12465.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436416553|gb|ELP14458.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436423496|gb|ELP21307.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|451909904|gb|AGF81710.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 276
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|134282012|ref|ZP_01768718.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 305]
gi|167915422|ref|ZP_02502513.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 112]
gi|237509873|ref|ZP_04522588.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei MSHR346]
gi|254301508|ref|ZP_04968952.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 406e]
gi|386865270|ref|YP_006278218.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
gi|418396636|ref|ZP_12970436.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
gi|418536468|ref|ZP_13102155.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|418545076|ref|ZP_13110342.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|418550608|ref|ZP_13115577.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
gi|418556286|ref|ZP_13120930.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|134246541|gb|EBA46629.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 305]
gi|157810747|gb|EDO87917.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei 406e]
gi|235002078|gb|EEP51502.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei MSHR346]
gi|385347306|gb|EIF53965.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|385351173|gb|EIF57663.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
gi|385352366|gb|EIF58781.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|385367171|gb|EIF72731.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|385370787|gb|EIF76017.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
gi|385662398|gb|AFI69820.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
Length = 341
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 34/237 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE--KEGKYLPGGKVI 82
+ DSR V+ L+LHYT A + A ++ A + S+HY++ + G +V
Sbjct: 67 NQDSR----VRTLVLHYTAQTLARSV-ALLTDPARPV-SAHYLVPDAADAGTLF---RVY 117
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIH 138
+VP+ RAWHAG+ W+ +R LN+ SIG+ +VN G + PF + Q+
Sbjct: 118 ALVPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMA 177
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+G L DI ++ +I PQ V+GH+DIAPG +DPGPLFPW L+ YG+GAW PD + V
Sbjct: 178 VVGRLAADIAARHEIPPQKVVGHSDIAPGRNLDPGPLFPWRMLHEQYGVGAW--PDAIAV 235
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL---LKAYGYNVTIT-----NKRSVIRAFKTHF 247
E ++ RP+ RG EL L AYGY+ T VI AF+ HF
Sbjct: 236 E----YYRACRPF-----RGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHF 283
>gi|289805907|ref|ZP_06536536.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 251
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 20 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 75
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 76 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 128
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 129 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 185
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 186 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 239
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 240 AI--AEALLEKYGQ 251
>gi|421476778|ref|ZP_15924643.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia multivorans CF2]
gi|400227745|gb|EJO57728.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia multivorans CF2]
Length = 310
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 127/254 (50%), Gaps = 26/254 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ V Q+VP
Sbjct: 61 DSR----IRFLVMHYTESDEAKSLRTLTGDTV----SVHYVVPAHPRSERGQPVVYQLVP 112
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ W++ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 113 EAQRAWHAGVSAWQQTTELNAASIGIENVNRGPLDPQQRT--WQPYPPEQVDALIRLSKD 170
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L GIGAW PD+ TV A +
Sbjct: 171 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWRAL-AQAGIGAW--PDDATVAARLAGRD 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P P +D L YGY+V T R V AF+ HF P D
Sbjct: 228 PHAP----VDVRELQTKLARYGYDVPTDGVLDTRTRRVFSAFQMHF----RPSDYAGDAD 279
Query: 262 TEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 280 AETDAIAQALLDKY 293
>gi|386015245|ref|YP_005933525.1| N-acetylmuramoyl-L- alanine amidase YbjR [Pantoea ananatis AJ13355]
gi|327393307|dbj|BAK10729.1| probable N-acetylmuramoyl-L- alanine amidase YbjR [Pantoea ananatis
AJ13355]
Length = 274
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 128/279 (45%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S I PGY +D H VK +++HYT +F+ + T
Sbjct: 18 SGIESRPGYWVD--------LRHPAQGARPRVKVVVIHYTAEDFSSSLATLTDRDV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S HY+I + + G + Q+VP+ AWHAG WR +N S+GI LVN G
Sbjct: 66 SVHYLIPRQPPQRKGQGIIWQLVPEQDLAWHAGPSFWRGATRINDTSVGIELVNNGYR-R 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI LG L KDI ++ I P+ ++GH+DIAP K DPGP FPW +L
Sbjct: 125 TLTGLEWQPFPPEQIRVLGALIKDIARRYGIAPENIVGHSDIAPQRKQDPGPRFPWRQL- 183
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT----ITNKRS 238
+ GIGAW P + + A P LDR L+ YGY VT +R+
Sbjct: 184 AEQGIGAWPDPQRVAFHLAGQHRDAAVPVATVLDR------LQRYGYEVTEGMSANQQRN 237
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+I AF+ HF P E + A AL+ KYG
Sbjct: 238 LIAAFQMHF----RPANYQGLADAETLAIAEALLEKYGE 272
>gi|153207254|ref|ZP_01946018.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain
protein [Coxiella burnetii 'MSU Goat Q177']
gi|165918677|ref|ZP_02218763.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain
protein [Coxiella burnetii Q321]
gi|212218202|ref|YP_002304989.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
CbuK_Q154]
gi|120576742|gb|EAX33366.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain
protein [Coxiella burnetii 'MSU Goat Q177']
gi|165917612|gb|EDR36216.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain
protein [Coxiella burnetii Q321]
gi|212012464|gb|ACJ19844.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
CbuK_Q154]
Length = 257
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 144/267 (53%), Gaps = 32/267 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYL 76
+E N N+ +++L+LHYT NF + T A + S HY+I E +GK
Sbjct: 3 YEINLNYPAKNFDKRIRFLVLHYTAKNFEDSLEILT-QEAFGV-SGHYLIPESSIDGK-- 58
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV--GEKFRSTNYYPFDE 134
++ Q+VP+ RAWHAG+ W+ +LN SIGI +VN G GEK R ++PF +
Sbjct: 59 --KQIFQLVPEKHRAWHAGVSAWQGRIHLNDTSIGIEIVNLGYQEEGEKRR---WFPFLD 113
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + L KDI+ ++++ P V+GH+DI+P K DPGPLFPW KLY + GIGAW D
Sbjct: 114 YQIELIIELAKDIIERYQLHPTCVVGHSDISPERKADPGPLFPWKKLY-EQGIGAWYE-D 171
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
E E + R+ R L R LKAYGY++ T + + V+ AF+ HF
Sbjct: 172 ECKKE-MERRLSNETTDIRWLQRH-----LKAYGYSIEETGELDKKTQQVVCAFQMHFRP 225
Query: 250 NQNPERIYADITTEDMFW-AWALVAKY 275
Y+ I ++ + +ALV KY
Sbjct: 226 TD-----YSGIPDKETYAILYALVKKY 247
>gi|365848807|ref|ZP_09389278.1| N-acetylmuramoyl-L-alanine amidase [Yokenella regensburgei ATCC
43003]
gi|364569451|gb|EHM47073.1| N-acetylmuramoyl-L-alanine amidase [Yokenella regensburgei ATCC
43003]
Length = 274
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 127/251 (50%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK L++HYT +F + T S+HY+I E ++ ++ Q+VP++ AWH
Sbjct: 42 VKVLVIHYTADDFDVSLATLTDKHV----SAHYLIPEIPPRFNGKPRIWQLVPEDKLAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AGI WR +N SIGI L N G G K + PF QI L L KDI+++
Sbjct: 98 AGISYWRGATRINDTSIGIELENRGWQKTAGVK----RFTPFAPAQIAALIPLAKDIIAR 153
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
++I+PQ V+ H D+AP K DPGPLFPW +L GIGAW + D + R P+ P
Sbjct: 154 YQIEPQNVVAHADVAPQRKDDPGPLFPWQQL-AKLGIGAWPNADRVAFYLAGR--APSAP 210
Query: 211 YPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L+LL YGY VT ++ VI AF+ HF P R E
Sbjct: 211 ----VDTASVLDLLSRYGYEVTPEMSEAQQKRVIMAFQMHF----RPTRWDGIADAETQA 262
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 IAEALLEKYGQ 273
>gi|283784634|ref|YP_003364499.1| N-acetylmuramoyl-L-alanine amidase [Citrobacter rodentium ICC168]
gi|282948088|emb|CBG87653.1| putative N-acetylmuramoyl-L-alanine amidase [Citrobacter rodentium
ICC168]
Length = 277
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 135/269 (50%), Gaps = 28/269 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
PE++ + H +K L++HYT +F + T SSHY+I +
Sbjct: 27 PEYQLDTRHQAQAAWPRIKVLVIHYTADDFDTSLATLTGKNV----SSHYLIPAVPPLHR 82
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFD 133
++ Q+VP+ AWHAG WR +N SIGI L N G GEK+ + PF+
Sbjct: 83 GKPRIWQLVPEEELAWHAGASDWRGATRINDTSIGIELENRGWRKSAGEKY----FAPFE 138
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI L L K+IV++++IKPQ V+ H DIAP K DPGPLFPW +L GIGAW P
Sbjct: 139 PAQIQALIPLAKEIVARYQIKPQNVVAHADIAPQRKDDPGPLFPWKQL-AQQGIGAW--P 195
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFS- 248
D V + P P R+ L+LL YGY V + ++ VI AF+ HF
Sbjct: 196 DAQRVNFYLAGRAPHTPVARE----SVLDLLSRYGYEVKADMSEREQQRVIMAFQMHFRP 251
Query: 249 ANQNPERIYADITTEDMFWAWALVAKYGS 277
A N AD T+ + A AL+ KYG
Sbjct: 252 ALWNG---VADAQTQAI--AEALLEKYGQ 275
>gi|399006818|ref|ZP_10709339.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
gi|398121713|gb|EJM11335.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
Length = 294
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 30/249 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+LHYT + A T R+ ++ S++Y+I ++ Y Q+V D+ R+WH
Sbjct: 50 IRFLVLHYTALDQAQSFETLT--RSEHV-SANYLIPDRPKTYKGLPVADQLVDDHDRSWH 106
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-------VVGEKFRSTNYYPFDENQIHTLGLLGKD 146
AG+ +W+ NLN S+GI +VN G ++GE P++E QI L L +D
Sbjct: 107 AGVSQWKNRSNLNDTSLGIEIVNAGWDKDTGQLLGE--------PYNEQQIELLISLTRD 158
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+V ++ I+P ++GH+DIAPG K+DPGP FPW +L + GIGAW PDE T++ + +F
Sbjct: 159 LVRKYDIQPTDIVGHSDIAPGRKIDPGPFFPWKRL-AEAGIGAW--PDERTIDDYLTRFS 215
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ P ++ + L+ YGY V+ AF+ F NQ DI T +
Sbjct: 216 VSPPSMVQVTKA-----LQTYGYGYLEQQPERVVEAFQMRF--NQENVSGIVDIRTAAIL 268
Query: 267 WAWALVAKY 275
++L+ KY
Sbjct: 269 --FSLIDKY 275
>gi|221213041|ref|ZP_03586017.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD1]
gi|221167254|gb|EED99724.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia multivorans
CGD1]
Length = 310
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 127/254 (50%), Gaps = 26/254 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ V Q+VP
Sbjct: 61 DSR----IRFLVMHYTESDEAKSLRTLTGDTV----SVHYVVPAHPRSERGQPVVYQLVP 112
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ W++ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 113 EAQRAWHAGVSAWQQTTELNAASIGIENVNRGPLDPQQRT--WQPYPPEQVDALIRLSKD 170
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 171 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWRAL-AQAGVGAW--PDDATVAARLAGRD 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P P +D L YGY+V I T R V AF+ HF P D
Sbjct: 228 PHAP----VDVRELQAKLARYGYDVPIDGVLDTRTRRVFSAFQMHF----RPSDYAGDAD 279
Query: 262 TEDMFWAWALVAKY 275
E AL+ KY
Sbjct: 280 AETDAIVQALLDKY 293
>gi|330816742|ref|YP_004360447.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia gladioli BSR3]
gi|327369135|gb|AEA60491.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia gladioli BSR3]
Length = 326
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 125/227 (55%), Gaps = 23/227 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V++L+LHYT + + T HN S+HY++ + V+Q+VP
Sbjct: 64 DSR----VRFLVLHYTESDDQRALFVLT----HNEVSAHYLVPSHPPRRKGEPVVLQLVP 115
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+N RAWHAG+ W+ LN+ SIGI +VN G + + + ++ P+ +QI + L KD
Sbjct: 116 ENQRAWHAGVSDWQGTTELNAASIGIEIVNAGPL-DAPTNRHWQPYAPDQIEAVVKLAKD 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+ H+DIAP K+DPGP FPW L GIGAW PD+ +V A +
Sbjct: 175 IVTRYGIPPTRVVAHSDIAPQRKIDPGPAFPWQALAR-AGIGAW--PDDASVAARLAGRA 231
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
P P +D RG+ L+L + YGY V R V AF+ HF
Sbjct: 232 PGDP----VDVRGLQLKLAR-YGYEVATDGVLDARTRRVFAAFQMHF 273
>gi|300716057|ref|YP_003740860.1| N-acetylmuramoyl-L-alanine amidase [Erwinia billingiae Eb661]
gi|299061893|emb|CAX59009.1| Probable N-acetylmuramoyl-L-alanine amidase [Erwinia billingiae
Eb661]
Length = 275
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 124/251 (49%), Gaps = 28/251 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T S+HY+I K + V ++VP++ AWH
Sbjct: 43 IKVLVIHYTAEDFPSSLATLTDRDV----SAHYLIPAKPVEKAHQPVVFRLVPESQLAWH 98
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG WR LN SIGI L N G +R T+ +YPF +QI L L +DIV
Sbjct: 99 AGPSFWRGASRLNDTSIGIELENQG-----YRRTSAGQIWYPFAPSQIAALAPLARDIVQ 153
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I PQ V+GH+DIAP K DPGPLFPW L + GIGAW PD V + P +
Sbjct: 154 RYNILPQDVVGHSDIAPQRKQDPGPLFPWQWL-AEQGIGAW--PDAGRVSFYLAGRPPEQ 210
Query: 210 PYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
P +D L LL YGY +T +R VI AF+ HF P E
Sbjct: 211 P----VDHAHLLTLLSLYGYQASPEMTADEQRKVIAAFQMHF----RPANYLGLPDAETE 262
Query: 266 FWAWALVAKYG 276
AL+ KYG
Sbjct: 263 ATVRALLEKYG 273
>gi|312172459|emb|CBX80716.1| probable N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC
BAA-2158]
Length = 289
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 136/274 (49%), Gaps = 33/274 (12%)
Query: 9 PGYVIDP-FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYV 67
PGY+++ +P +N V++L+LHYT + A + T + S+HY+
Sbjct: 27 PGYLLNSEYPSTSQNER---------VRFLVLHYTAADDAESLRLLT----QGVVSAHYL 73
Query: 68 ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
+ + V Q+VP++ RAWHAG+ W N+N SIGI +V+ G + +
Sbjct: 74 VPSAVDPSMKRRTVYQLVPEDKRAWHAGVSNWNGRSNINDSSIGIEIVHPGFI-DSSDGR 132
Query: 128 NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGI 187
+YP+D Q+ + L +D++ ++ I P V+ H+DIAPG K DPGPLFPW +L + GI
Sbjct: 133 YWYPWDAQQVRLVASLAQDVIQRYAITPDNVVAHSDIAPGRKFDPGPLFPWQQL-AEQGI 191
Query: 188 GAWLSPDEMTVEA-IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIR 241
GAW PD TV+ + + A RK+ L +YGY + T R I
Sbjct: 192 GAW--PDSTTVQHYLAGRSHFAAGSVRKIQTD-----LASYGYTIPQTGIGDEKTRKAIA 244
Query: 242 AFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
AF+ HF P E A ALVAKY
Sbjct: 245 AFQMHF----RPTNFSGVADAETEAIAAALVAKY 274
>gi|387889842|ref|YP_006320140.1| N-acetylmuramoyl-L-alanine amidase [Escherichia blattae DSM 4481]
gi|414592491|ref|ZP_11442141.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia blattae NBRC
105725]
gi|386924675|gb|AFJ47629.1| N-acetylmuramoyl-L-alanine amidase [Escherichia blattae DSM 4481]
gi|403196560|dbj|GAB79793.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia blattae NBRC
105725]
Length = 280
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 123/251 (49%), Gaps = 22/251 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ LI+HYT +F + T S+HY+I + Y + Q+VP+ AWH
Sbjct: 45 ITSLIIHYTAGDFDSSLATLTGPDV----SAHYLIPARPPGYRGKPVIWQLVPEEKLAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +LNS S+GI L N G V + PF+ QI L L ++I+ +
Sbjct: 101 AGVSYWRGYTHLNSTSVGIELENSGWRQVPAGLGMVKRFEPFEARQIAVLTTLAREIIDR 160
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ VL H DIAP K DPGPLFPW +L GIGAW PDE V+ +R P P
Sbjct: 161 YHIAPQNVLAHADIAPQRKDDPGPLFPWQQLARQ-GIGAW--PDEARVQFWLRGRDPQAP 217
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L LL YGY V T ++ VI AF+ HF P R +
Sbjct: 218 ----VDPQQLLVLLARYGYQVTPGMTPEQQQRVITAFQMHF----RPARYDGVADAQTQA 269
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 270 IAEALLEKYGQ 280
>gi|416550461|ref|ZP_11755996.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363568417|gb|EHL52397.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
Length = 276
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 128/256 (50%), Gaps = 36/256 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT NF + T SSHY+I Y GGK + Q+VP+ +A
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLY--GGKPGIWQLVPEQDQA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
WHAG+ WR LN SIGI L N GGV ++ PF+ QI L L K
Sbjct: 98 WHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAK 150
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V +
Sbjct: 151 DIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGR 207
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADIT 261
P P +D L LL YGY V T ++ VI AF+ HF Q AD
Sbjct: 208 APYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAE 261
Query: 262 TEDMFWAWALVAKYGS 277
T+ + A AL+ KYG
Sbjct: 262 TQAI--AEALLEKYGQ 275
>gi|161524857|ref|YP_001579869.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia multivorans ATCC 17616]
gi|189350393|ref|YP_001946021.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia multivorans ATCC
17616]
gi|160342286|gb|ABX15372.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia multivorans ATCC 17616]
gi|189334415|dbj|BAG43485.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia multivorans ATCC
17616]
Length = 291
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 127/254 (50%), Gaps = 26/254 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDEAKSLRTLTGDTV----SVHYVVPAHPRSERGQPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ W++ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EAQRAWHAGVSAWQQTTELNAASIGIENVNRGPLDPQQRT--WQPYPPEQVDALIRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWRAL-AQAGVGAW--PDDATVAARLAGRD 208
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P P +D L YGY+V T R V AF+ HF P D
Sbjct: 209 PHAP----VDVRELQTKLARYGYDVPTDGVLDTRTRRVFSAFQMHF----RPSDYAGDAD 260
Query: 262 TEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 261 AETDAIAQALLDKY 274
>gi|292488320|ref|YP_003531202.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora CFBP1430]
gi|292899518|ref|YP_003538887.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC 49946]
gi|428785260|ref|ZP_19002751.1| putative N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora
ACW56400]
gi|291199366|emb|CBJ46483.1| putative N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC
49946]
gi|291553749|emb|CBA20794.1| probable N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora
CFBP1430]
gi|426276822|gb|EKV54549.1| putative N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora
ACW56400]
Length = 289
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 136/274 (49%), Gaps = 33/274 (12%)
Query: 9 PGYVIDP-FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYV 67
PGY+++ +P +N V++L+LHYT + A + T + S+HY+
Sbjct: 27 PGYLLNSEYPSTSQNER---------VRFLVLHYTAADDAVSLRLLT----QGVVSAHYL 73
Query: 68 ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
+ + V Q+VP++ RAWHAG+ W NLN SIGI +V+ G + +
Sbjct: 74 VPSAVDPSMKRRTVYQLVPEDKRAWHAGVSNWNGRSNLNDSSIGIEIVHPGFI-DSSDGR 132
Query: 128 NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGI 187
+YP+D Q+ + L +D++ ++ I P V+ H+DIAPG K DPGPLFPW +L + GI
Sbjct: 133 YWYPWDAQQVRLVASLAQDVIQRYAITPDNVVAHSDIAPGRKFDPGPLFPWQQL-AEQGI 191
Query: 188 GAWLSPDEMTVEA-IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIR 241
GAW PD TV+ + + A RK+ L +YGY + T R I
Sbjct: 192 GAW--PDSTTVQHYLAGRSHFAAGSVRKIQTD-----LASYGYTIPQTGIGDEKTRKAIA 244
Query: 242 AFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
AF+ HF P E A ALVAKY
Sbjct: 245 AFQMHF----RPTNFSGVADAETEAIAAALVAKY 274
>gi|425898940|ref|ZP_18875531.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397889744|gb|EJL06226.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 294
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 30/249 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+LHYT + A T R+ ++ S++Y+I ++ Y Q+V D+ R+WH
Sbjct: 50 IRFLVLHYTALDQAQSFETLT--RSEHV-SANYLIPDRPKTYKGLPVADQLVDDHDRSWH 106
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-------VVGEKFRSTNYYPFDENQIHTLGLLGKD 146
AG+ +W+ NLN S+GI +VN G ++GE P++E QI L L +D
Sbjct: 107 AGVSQWKNRSNLNDTSLGIEIVNAGWDKDTGQLLGE--------PYNERQIELLISLTRD 158
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+V ++ I+P ++GH+DIAPG K+DPGP FPW +L + GIGAW PDE T++ + +F
Sbjct: 159 LVRKYDIQPTDIVGHSDIAPGRKIDPGPFFPWKRL-AEAGIGAW--PDERTIDDYLARFS 215
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ P ++ + L+ YGY V+ AF+ F NQ DI T +
Sbjct: 216 VSPPSMVQVTKA-----LQTYGYGYLDQQPERVVEAFQMRF--NQENVSGIVDIRTAAIL 268
Query: 267 WAWALVAKY 275
++L+ KY
Sbjct: 269 --FSLIDKY 275
>gi|386080013|ref|YP_005993538.1| N-acetylmuramoyl-L- alanine amidase YbjR [Pantoea ananatis PA13]
gi|354989194|gb|AER33318.1| N-acetylmuramoyl-L- alanine amidase YbjR [Pantoea ananatis PA13]
Length = 274
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 130/279 (46%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S I PGY +D H VK +++HYT +F+ + T
Sbjct: 18 SGIESRPGYWVD--------LRHPAQGARPRVKVVVIHYTAEDFSSSLATLTDRDV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S HY+I + ++ G + Q+VP+ AWHAG WR +N S+GI LVN G
Sbjct: 66 SVHYLIPRQPPQHKGQGIIWQLVPEQDLAWHAGPSFWRGATRINDTSVGIELVNNGYR-R 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI LG L KDI ++ I P+ ++GH+DIAP K DPGP FPW +L
Sbjct: 125 TLTGLEWQPFPPEQIRVLGALIKDIARRYGIAPENIVGHSDIAPQRKQDPGPRFPWRQL- 183
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT----ITNKRS 238
+ GIGAW +P + + A P LDR L+ YGY VT +++
Sbjct: 184 AEQGIGAWPAPQRVAFYLAGQHRDAAVPVATVLDR------LQRYGYEVTEGMSANQQQN 237
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+I AF+ HF P E + A AL+ KYG
Sbjct: 238 LIAAFQMHF----RPANYQGLADAETLAIAEALLEKYGE 272
>gi|332161744|ref|YP_004298321.1| Negative regulator of beta-lactamase expression [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325665974|gb|ADZ42618.1| Negative regulator of beta-lactamase expression [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 258
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF + I + T N S HY++ + + Y G ++ +V +N
Sbjct: 19 VRFLVLHYTAENFENSINSLTGNNV----SVHYLVPDLDDDSYKKAGFNNIRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W N+N SIGI +VN + E ++ P+ ENQI + L +I+
Sbjct: 75 ARAWHAGVSSWAGRANINDTSIGIEIVN--LATEHSGVFDFPPYPENQIAAVKQLAANIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P +V+ H+DIAP K DPGP FPW +LY + GIGAW D T E V++F
Sbjct: 133 QRYPDISPTHVVAHSDIAPTRKSDPGPKFPWLELY-NNGIGAWY--DSETKEKFVQQFT- 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
+ P K D L K YGY+++I + + ++RAF+ HF ++ I DI T
Sbjct: 189 QQGLPTKAD---LLSYFKTYGYDISIASSDDGYQHLVRAFQLHFRSDNYDGHI--DIETV 243
Query: 264 DMFWAWALVAKY 275
+ +ALV KY
Sbjct: 244 AIL--YALVEKY 253
>gi|307544902|ref|YP_003897381.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Halomonas elongata DSM 2581]
gi|307216926|emb|CBV42196.1| N-acetylmuramoyl-L-alanine amidase domain protein [Halomonas
elongata DSM 2581]
Length = 294
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 136/280 (48%), Gaps = 36/280 (12%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
+S+ GY +D H S V LILHYT + A ++ T R
Sbjct: 25 TSLESRDGYRVD--------HGHPSSAHDSRVSQLILHYTHEDEATSLSILTGPRV---- 72
Query: 63 SSHYV--ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
SSHY+ + ++G+ +V Q+V ++ RAWHAG WR LN+ SIGI +VN G
Sbjct: 73 SSHYLLPVPARQGEQ----RVYQLVDESRRAWHAGASHWRGQSGLNATSIGIEIVNAGPE 128
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
+ P+ + QI TL L +DI ++ I P +LGH D+AP K+DPGP FPW +
Sbjct: 129 -RGADQPRWAPYPDAQIDTLIALLRDIAARHDIAPDDILGHADVAPERKVDPGPAFPWKR 187
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK---- 236
L+ + GIGAW PD V R+F P D F + L +GY + + +
Sbjct: 188 LH-EAGIGAW--PDTDEVAHYRRRFATRPP-----DLTTFQQALAEWGYTLPASGRLDER 239
Query: 237 -RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
R+V+RAF+ HF P E WAL+AKY
Sbjct: 240 TRAVLRAFQMHF----RPADYRGRPDIESAARLWALLAKY 275
>gi|365108295|ref|ZP_09336196.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter freundii
4_7_47CFAA]
gi|363640651|gb|EHL80101.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter freundii
4_7_47CFAA]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 124/249 (49%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAVPPLYHGKPRIWQLVPEKDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N SIGI L N G +K + Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISFWRGATRINDTSIGIELENRG--WQKSAGSKYFAPFEPAQIQALVPLAKDIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKPQ V+ H DIAP K DPGPLFPW L + GIGAW PD V + P P
Sbjct: 158 IKPQNVVAHADIAPQRKDDPGPLFPWQALAVQ-GIGAW--PDAQRVAFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ L+LL YGY V T ++ VI AF+ HF P E A
Sbjct: 213 --VETASLLDLLSRYGYEVKPEMTPREQQRVIMAFQMHF----RPTLWNGVADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|378767913|ref|YP_005196383.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea ananatis LMG 5342]
gi|365187396|emb|CCF10346.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea ananatis LMG 5342]
Length = 274
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 128/279 (45%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S I PGY +D H VK +++HYT +F+ + T
Sbjct: 18 SGIESRPGYWVD--------LRHPAQGARPRVKVVVIHYTAEDFSSSLATLTDRDV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S HY+I + + G + Q+VP+ AWHAG WR +N S+GI LVN G
Sbjct: 66 SVHYLIPRQPPQRKGQGIIWQLVPEQDLAWHAGPSFWRGATRINDTSVGIELVNNGYR-R 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI LG L KDI ++ I P+ ++GH+DIAP K DPGP FPW +L
Sbjct: 125 TLTGLEWQPFPPEQIRVLGALIKDIARRYGIAPENIVGHSDIAPQRKQDPGPRFPWRQL- 183
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT----ITNKRS 238
+ GIGAW P + + A P LDR L+ YGY VT +R+
Sbjct: 184 AEQGIGAWPDPQRVAFYLAGQHRDAAVPVATVLDR------LQRYGYEVTEGMSANQQRN 237
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+I AF+ HF P E + A AL+ KYG
Sbjct: 238 LIAAFQMHF----RPANYQGLADAETLAIAEALLEKYGE 272
>gi|146311041|ref|YP_001176115.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter sp. 638]
gi|145317917|gb|ABP60064.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Enterobacter sp. 638]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 129/251 (51%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I K P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKHV----SSHYLIPAKPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST-NYYPFDENQIHTLGLLGKDIVSQ 150
WHAG+ WR +N SIGI L N G +K S + PF+ QI L L KDI+++
Sbjct: 98 WHAGVSFWRGTNRINDTSIGIELENRG--WQKTGSVKTFTPFEPAQIAALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ IKPQ V+ H+DIAP K DPGPLFPW L GIGAW P A V + +P
Sbjct: 156 YDIKPQNVVAHSDIAPQRKDDPGPLFPWHAL-AQQGIGAWPDP------ARVAFYLNGKP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ ++ L+LL YGY V T K+ +I AF+ H+ PE + M
Sbjct: 209 PYQSVEPDALLDLLARYGYEVPENSTEAQKKRIIMAFQMHY----RPEVWNGIADAQSMA 264
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 265 IAEALLEKYGQ 275
>gi|296103148|ref|YP_003613294.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057607|gb|ADF62345.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 129/253 (50%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I K P GK + Q+VP+N A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAKPPA--PDGKPRIWQLVPENELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAGI WR +N S+GI L N G G K ++ PF+ QI L L KDI+
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRGWQKTAGVK----HFSPFEPAQIAALVPLAKDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ IKP+ V+ H DIAP K DPGPLFPW +L + GIGAW PD V +
Sbjct: 154 ARYHIKPENVVAHADIAPQRKDDPGPLFPWREL-AEQGIGAW--PDASRVAF----YMNG 206
Query: 209 RPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTED 264
RP + ++ L+LL YGY V T ++ +I F+ HF P+ E
Sbjct: 207 RPRYQAVETAALLDLLARYGYEVPDNSTPAQQKRIIMVFQMHF----RPQLWNGVADVET 262
Query: 265 MFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 263 LAIAEALLEKYGQ 275
>gi|50121589|ref|YP_050756.1| N-acetylmuramoyl-L-alanine amidase [Pectobacterium atrosepticum
SCRI1043]
gi|49612115|emb|CAG75565.1| putative N-acetylmuramoyl-L-alanine amidase [Pectobacterium
atrosepticum SCRI1043]
Length = 275
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 129/253 (50%), Gaps = 30/253 (11%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMS-VKYLILHYTVYNFAHIITAFTSNRAHN 60
PSS+ YV++ SR S +++L++HYT +FA + T +
Sbjct: 19 PSSLQEQHNYVLE---------TALQSRAQESRIRFLVIHYTAEDFATSLNILTDDHV-- 67
Query: 61 LHSSHYVISEKEGKYLPGGKVI--QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG 118
S+HY+I L GK + Q+VP++ AWHAG WR LN+ SIGI + N G
Sbjct: 68 --SAHYLIPAHPP--LQHGKPLAWQLVPESHAAWHAGASSWRGFSRLNNSSIGIEIENAG 123
Query: 119 VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPW 178
+ PF +QI + + +DIV +++I PQ V+ H+DIAP K DPGPLFPW
Sbjct: 124 Y-QRTLTGYTWAPFPTSQIQLVTAIARDIVERYQIAPQNVVAHSDIAPQRKQDPGPLFPW 182
Query: 179 GKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TIT 234
+L G+GAW P+ V ++ + P +D I LE L YGY+V T
Sbjct: 183 -RLLAQAGVGAW--PEARRVTFYLKGRQSTEP----VDEAILLEKLSRYGYSVPETMTAR 235
Query: 235 NKRSVIRAFKTHF 247
K+ VI AF+ HF
Sbjct: 236 EKQQVIAAFQMHF 248
>gi|423201082|ref|ZP_17187662.1| hypothetical protein HMPREF1167_01245 [Aeromonas veronii AER39]
gi|404618065|gb|EKB14986.1| hypothetical protein HMPREF1167_01245 [Aeromonas veronii AER39]
Length = 281
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 21/243 (8%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E++ + + + + +LILHYT + A+ + T H + S+HY+I ++ P
Sbjct: 29 EYQLSTRYQSANQNERIAFLILHYTDEDDANSLRLLTEPE-HKV-SAHYLIP-RDSHERP 85
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF----RSTNYYPFD 133
V Q+VPD+ RAWHAG +W + LN+ S+GI +VN G E + + P+
Sbjct: 86 L-TVYQLVPDSARAWHAGRSRWHQYAGLNASSLGIEIVNLGYPAEDEPLAPDARRWQPYT 144
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI +G L +++V++++I P VLGH+D+AP K DPGP FPW +LYL YG+GAW P
Sbjct: 145 PQQIAAVGALSRELVARYQIPPTQVLGHSDVAPERKQDPGPHFPWRQLYLTYGVGAW--P 202
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFS 248
DE V ++ A P P D ++ + L YGY + + + +V+ AF+ HF
Sbjct: 203 DEGRVAELL-----ASPLP-DWDAAMWQQQLARYGYGLPRSGQWDEQSCAVMGAFQLHFR 256
Query: 249 ANQ 251
A++
Sbjct: 257 ASK 259
>gi|300779383|ref|ZP_07089241.1| N-acetylmuramoyl-L-alanine amidase [Chryseobacterium gleum ATCC
35910]
gi|300504893|gb|EFK36033.1| N-acetylmuramoyl-L-alanine amidase [Chryseobacterium gleum ATCC
35910]
Length = 341
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 18/220 (8%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+YLILHYT IT T S+HY+++ ++ Q+V +N R++HA
Sbjct: 106 RYLILHYTALPDDKSITVLTQQAV----SAHYLVNNTGD-----NEIYQLVDENKRSYHA 156
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+ WR D+NLN SIGI +VN G + + PF ++Q+ + L KDIV++++I+
Sbjct: 157 GVSAWRNDKNLNDTSIGIEIVNTGYTTDATGKRTFAPFSDDQVKKVAALVKDIVTRYQIQ 216
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
P VLGH+DIAP K DPGP+FPW KLY +Y IG W DE + + +
Sbjct: 217 PTNVLGHSDIAPTRKQDPGPMFPWKKLYDEYQIGMWY--DEAAKQTYLEAAQADITAKYN 274
Query: 215 LDRGIFL--ELLKAYGYNVTITNK-----RSVIRAFKTHF 247
IFL L+ +GY + + + I AF+ HF
Sbjct: 275 EPGFIFLIQTSLQKFGYALDSNGQWDDATKKTIEAFQYHF 314
>gi|375000647|ref|ZP_09724987.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353075335|gb|EHB41095.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 125/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGASFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|261346676|ref|ZP_05974320.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Providencia
rustigianii DSM 4541]
gi|282565382|gb|EFB70917.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Providencia
rustigianii DSM 4541]
Length = 295
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 26/265 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+++H ++Y++LHYTV + AH I T + SSHY+I + + +
Sbjct: 28 DQSHPSRNTSERIQYIVLHYTVSDDAHSIKILTKGKV----SSHYLIPSQPEQKNGQPVI 83
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
+Q+VP+ ++AWHAG +W+ +LN SIGI +VN G+V + + + PF+++QI L
Sbjct: 84 LQLVPERLKAWHAGDSRWQYHHSLNDNSIGIEIVNEGLVRKNGQDI-WQPFNDSQIDALI 142
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L DI+ ++ I P+ V+GH+DIAP K DPG FPW L L +GIGAW P +T
Sbjct: 143 PLLSDIMQRYGIPPENVIGHSDIAPLRKQDPGRAFPWQALAL-HGIGAWPDPQTVTKHLA 201
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGY-NVTITNK-----RSVIRAFKTHFSANQNPER 255
R+ P + R + LK YGY + T K + +RAF+ HF P
Sbjct: 202 GRQVN----APANVLR--LQKALKFYGYAGIPQTGKLDAETKRTLRAFQLHF----RPRD 251
Query: 256 I--YADITTEDMFWAWALVAKYGSM 278
I AD TE + A AL+ KY M
Sbjct: 252 IDGLADAETEAI--ALALIEKYRDM 274
>gi|212213125|ref|YP_002304061.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
CbuG_Q212]
gi|212011535|gb|ACJ18916.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
CbuG_Q212]
Length = 257
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 143/267 (53%), Gaps = 32/267 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYL 76
+E N N+ +++L+LHYT NF + T A + S HY+I E +GK
Sbjct: 3 YEINLNYPAKNFDKRIRFLVLHYTAKNFEDSLEILT-QEAFGV-SGHYLIPESSIDGK-- 58
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV--GEKFRSTNYYPFDE 134
++ Q+VP+ RAWHAG+ W+ +LN SIGI +VN G GEK R ++PF +
Sbjct: 59 --KQIFQLVPEKHRAWHAGVSAWQDRIHLNDTSIGIEIVNLGYQEEGEKKR---WFPFLD 113
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + L KDI+ ++++ P V+GH+DI+P K DPGPLFPW KLY + GIGAW D
Sbjct: 114 YQIELIIELAKDIIERYQLHPTCVVGHSDISPERKADPGPLFPWKKLY-EQGIGAWYE-D 171
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
E E + R+ R L R LK YGY++ T + + V+ AF+ HF
Sbjct: 172 ECKKE-MERRLSNETTDIRWLQRH-----LKTYGYSIEETGELDKKTQQVVCAFQMHFRP 225
Query: 250 NQNPERIYADITTEDMFW-AWALVAKY 275
Y+ I ++ + +ALV KY
Sbjct: 226 TD-----YSGIPDKETYAILYALVKKY 247
>gi|335419946|ref|ZP_08550989.1| negative regulator of AmpC, AmpD [Salinisphaera shabanensis E1L3A]
gi|334895592|gb|EGM33760.1| negative regulator of AmpC, AmpD [Salinisphaera shabanensis E1L3A]
Length = 287
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 129/249 (51%), Gaps = 26/249 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + A I T SSHYV++++ + V Q+V ++ RAWH
Sbjct: 57 VRFLVLHYTGGDEARAIKVLTGPSV----SSHYVVADQPPRRGGNPVVYQLVDEHARAWH 112
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W +LN SIGI +VN G V + T + FD QI + L +DI++++ I
Sbjct: 113 AGRSAWGGRTHLNDSSIGIEIVNPGPV-DTPSGTVWRGFDGGQIEAVTTLARDIIARYDI 171
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+ H DI+PG K+DPGP FPW +LY GIGAW PDE TV A +F+ A P
Sbjct: 172 APENVVAHADISPGRKIDPGPAFPWEQLYRQ-GIGAW--PDEPTVNAYRERFRYAMP--- 225
Query: 214 KLDRGI--FLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMF 266
GI L YGY++ T SV+ +F+ HF P R E +
Sbjct: 226 ----GIAAIQSALSRYGYDIDTTGVLDQPTHSVVVSFQMHF----RPGRYDGIPDLETVA 277
Query: 267 WAWALVAKY 275
WAL KY
Sbjct: 278 RLWALNDKY 286
>gi|437834108|ref|ZP_20844876.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435301398|gb|ELO77426.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 274
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 126/253 (49%), Gaps = 32/253 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NFA + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFAVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLVKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L L YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLASLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYG 276
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYG 274
>gi|423139362|ref|ZP_17127000.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051916|gb|EHY69807.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 276
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 130/273 (47%), Gaps = 37/273 (13%)
Query: 20 EKNRNHYDSRDGMSVKY-----LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
+KN D+R Y L++HYT NFA + T SSHY+I
Sbjct: 25 DKNGYQLDTRHRAQAAYPRINVLVIHYTAENFAVSLATLTGRNV----SSHYLIPAIPPL 80
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTN 128
Y ++ Q+VP+ WHAG+ WR LN S+GI L N GGV +
Sbjct: 81 YNGKPRIWQLVPEQELTWHAGVSFWRGATRLNDTSVGIELENRGWRMSGGV-------KS 133
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIG 188
+ PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIG
Sbjct: 134 FAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIG 192
Query: 189 AWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFK 244
AW PD V + P P +D L LL YGY V T ++ VI AF+
Sbjct: 193 AW--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQ 246
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF Q AD T+ + A AL+ KYG
Sbjct: 247 MHFRPAQ--WNGIADAETQAI--AEALLEKYGQ 275
>gi|29653726|ref|NP_819418.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii RSA
493]
gi|154707367|ref|YP_001425034.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
Dugway 5J108-111]
gi|161830043|ref|YP_001596320.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding
domain-containing protein [Coxiella burnetii RSA 331]
gi|29540989|gb|AAO89932.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii RSA
493]
gi|154356653|gb|ABS78115.1| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii
Dugway 5J108-111]
gi|161761910|gb|ABX77552.1| N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain
protein [Coxiella burnetii RSA 331]
Length = 257
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 143/267 (53%), Gaps = 32/267 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK--EGKYL 76
+E N N+ +++L+LHYT NF + T A + S HY+I E +GK
Sbjct: 3 YEINLNYPAKNFDKRIRFLVLHYTAKNFEDSLEILT-QEAFGV-SGHYLIPESSIDGK-- 58
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV--GEKFRSTNYYPFDE 134
++ Q+VP+ RAWHAG+ W+ +LN SIGI +VN G GEK R ++PF +
Sbjct: 59 --KQIFQLVPEKHRAWHAGVSAWQGRIHLNDTSIGIEIVNLGYQEEGEKRR---WFPFLD 113
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + L KDI+ ++++ P V+GH+DI+P K DPGPLFPW KLY + GIGAW D
Sbjct: 114 YQIELIIELAKDIIERYQLHPTCVVGHSDISPERKADPGPLFPWKKLY-EQGIGAWYE-D 171
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
E E + R+ R L R LK YGY++ T + + V+ AF+ HF
Sbjct: 172 ECKKE-MERRLSNETTDIRWLQRH-----LKTYGYSIEETGELDKKTQQVVCAFQMHFRP 225
Query: 250 NQNPERIYADITTEDMFW-AWALVAKY 275
Y+ I ++ + +ALV KY
Sbjct: 226 TD-----YSGIPDKETYAILYALVKKY 247
>gi|311280242|ref|YP_003942473.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Enterobacter cloacae SCF1]
gi|308749437|gb|ADO49189.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Enterobacter cloacae SCF1]
Length = 274
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 126/251 (50%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + S+HY+I E + ++ Q+V ++ AWH
Sbjct: 42 IKILVIHYTAGDFDASLATLTDRQV----SAHYLIPEAPPVHHGKPRIWQLVAEDELAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AG+ WR +N SIGI L N G G K ++ PF QI L L KDI+++
Sbjct: 98 AGVSFWRGATRINDTSIGIELENRGWQKTAGAK----SFAPFAPAQIDALIPLAKDIIAR 153
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
++I PQ V+ H DIAP K DPGPLFPW L GIGAW PD V + P+ P
Sbjct: 154 YRIAPQNVVAHADIAPQRKDDPGPLFPWQTLARQ-GIGAW--PDPARVAFYLGGRAPSAP 210
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+D L+LL YGY V T ++ VI AF+ HF PER +
Sbjct: 211 ----VDTASLLDLLARYGYEVPPGMTPAQQQRVIMAFQMHF----RPERWDGVADAQTQA 262
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 IAEALLEKYGQ 273
>gi|186476452|ref|YP_001857922.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia phymatum STM815]
gi|184192911|gb|ACC70876.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia phymatum STM815]
Length = 290
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 123/224 (54%), Gaps = 27/224 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+++L++HYT + + T + S+HYV+S EK G+ + + Q+VP++
Sbjct: 47 IRFLVMHYTEIDEKQSLDVLTQEQV----SAHYVVSDHPEEKHGEPI----IWQLVPESQ 98
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVN-GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAGI W+ LN+ SIGI VN G + G + R+ + P+ Q+ L L KDIV
Sbjct: 99 RAWHAGISFWQGTTELNAASIGIENVNLGPIDGPQGRT--WQPYPPQQVDALIRLAKDIV 156
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ I P V+GH+DIAP K+DPGP+FPW +LY D G+GAW PDE TV + +P
Sbjct: 157 TRYDIPPTRVVGHSDIAPQRKIDPGPVFPWKQLY-DAGVGAW--PDESTVTKELAGREPH 213
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
P D + L YGY V R V AF+ HF
Sbjct: 214 AP----ADVRALQQKLARYGYEVATDGVLDDRTRRVFAAFQMHF 253
>gi|269139569|ref|YP_003296270.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda EIB202]
gi|387868144|ref|YP_005699613.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda FL6-60]
gi|267985230|gb|ACY85059.1| putative N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda
EIB202]
gi|304559457|gb|ADM42121.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda FL6-60]
Length = 277
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 34/256 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
++YL+LHYT +F + T R S+HY++ + GG+ V Q+VP++ A
Sbjct: 44 IRYLVLHYTAEDFPSSLRVLTGKRV----SAHYLVPAAPPQR--GGRPVVWQLVPESRSA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDI 147
WHAG+ WR +LN SIGI + N G +R T+ +YPF QI + L +DI
Sbjct: 98 WHAGVSYWRGQTHLNDNSIGIEIENPG-----YRRTSHGIVWYPFTPQQITAVRALAQDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V ++ I PQ V+GH DIAP K+DPGPLFPW ++ GIGAW P+ V +++++
Sbjct: 153 VRRYAIAPQNVVGHMDIAPQRKVDPGPLFPW-QMLAQQGIGAW--PEAARVRDSLQRYRQ 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITT 262
P D L +GY + + R VI AF+ HF P +
Sbjct: 210 RPP-----DVAYLQRRLAQWGYQIEPSGINDAASRRVIAAFQMHF----RPTDFRGEPDA 260
Query: 263 EDMFWAWALVAKYGSM 278
E AL+A+YG++
Sbjct: 261 ETTAIVDALIAQYGAV 276
>gi|262038657|ref|ZP_06012024.1| N-acetylmuramoyl-L-alanine amidase AmiD [Leptotrichia goodfellowii
F0264]
gi|261747327|gb|EEY34799.1| N-acetylmuramoyl-L-alanine amidase AmiD [Leptotrichia goodfellowii
F0264]
Length = 265
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 29/221 (13%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+++I+HYT + + T+ S+H++IS++E V +V +N RAWHA
Sbjct: 41 RFIIVHYTALDRNRSLEVLTTQEV----SAHFLISDEEK-----DPVYALVDENRRAWHA 91
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+ +W+ +NLN S+GI +VN G + E + P+ + QI L +L K + +++I
Sbjct: 92 GVSEWKTSKNLNDSSLGIEIVNPGYIKE----NEFVPYKDFQIKELAVLIKYLSEKYQIP 147
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+LGH+DIAP K DPGPL PW KLY DY IG W +A+ FK Y +
Sbjct: 148 ATNILGHSDIAPQRKQDPGPLMPWKKLYTDYNIGMWYD------DAVKESFK--NQYIQT 199
Query: 215 LDRGIFLEL---LKAYGYNVTITNK-----RSVIRAFKTHF 247
LE+ LK +GY++ ITN+ ++VIRAF+ HF
Sbjct: 200 FYTLPVLEVQKELKKFGYSIEITNQWDKQTQNVIRAFQHHF 240
>gi|237732147|ref|ZP_04562628.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226907686|gb|EEH93604.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 276
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAVPPLYHGKPRIWQLVPEKDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N SIGI L N G +K + Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISFWRGATRINDTSIGIELENRG--WQKSAGSKYFAPFEPAQIQALIPLAKDIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKPQ V+ H DIAP K DPGPLFPW L GIGAW PD V + P P
Sbjct: 158 IKPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDAQRVAFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ L+LL YGY V T ++ VI AF+ HF + AD T+ + A
Sbjct: 213 --VETASLLDLLSRYGYEVKPEMTPREQQRVIMAFQMHFRSTL--WNGVADAETQAI--A 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|453064004|gb|EMF04978.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia marcescens VGH107]
Length = 255
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 135/257 (52%), Gaps = 27/257 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIV 85
G V++L+LHYT NFA +T+ T S+HY++ + E Y G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVTSLTGKSV----SAHYLVPDPTEATYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W N+N SIGI +VN + + + PF+ QI + L +
Sbjct: 72 DENERAWHAGTSQWGTRSNINDTSIGIEIVN--LASGDGGNITFPPFNPQQIEAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +LY G+GAW DE T + ++
Sbjct: 130 NILQRYPDISPVNVVAHSDIAPGRKSDPGPQFPWQQLY-QAGVGAWY--DEATKQQRQQE 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
+ ++ P + + L+L YGY+ + N R ++RAF+ HF P++ +
Sbjct: 187 YC-SQGLPAQAE---LLKLFAQYGYDTSAANTAEGYRQLVRAFQLHF----RPQKYDGVM 238
Query: 261 TTEDMFWAWALVAKYGS 277
E ALV KY +
Sbjct: 239 DVETAAVLRALVDKYAA 255
>gi|16764293|ref|NP_459908.1| aminidase [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|378983493|ref|YP_005246648.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|16419442|gb|AAL19867.1| putative aminidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|312911921|dbj|BAJ35895.1| N-acetylmuramoyl-L-alanine amidase AmiD [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
Length = 276
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 125/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GI AW PD V + P
Sbjct: 153 IARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GISAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|365877921|ref|ZP_09417411.1| N-acetylmuramoyl-L-alanine amidase [Elizabethkingia anophelis Ag1]
gi|442587232|ref|ZP_21006051.1| N-acetylmuramoyl-L-alanine amidase [Elizabethkingia anophelis R26]
gi|365754304|gb|EHM96253.1| N-acetylmuramoyl-L-alanine amidase [Elizabethkingia anophelis Ag1]
gi|442563105|gb|ELR80321.1| N-acetylmuramoyl-L-alanine amidase [Elizabethkingia anophelis R26]
Length = 346
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+YLILHYT + ITA T S+HY++S+ + ++ QIV +N R++HA
Sbjct: 110 RYLILHYTALDNDRSITALTQRGV----SAHYLVSD-----INDQEIYQIVDENKRSYHA 160
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+ WR+D NLN SIGI +VN G + F + QI + L KDIV ++ I
Sbjct: 161 GVSNWRKDSNLNDTSIGIEIVNSGFTTNASGQRIFADFPDYQIKKVAALAKDIVQRYNIP 220
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF--------K 206
P VL H+DIAPG K DPGP FPW KLY +Y IG W DE + + K
Sbjct: 221 PTNVLAHSDIAPGRKQDPGPKFPWKKLYDEYQIGMWY--DEGVRAGFLNQLETGTFESDK 278
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ K+ L+A GY V ++ + + V+++F+ HF
Sbjct: 279 NTPPFIYKVQ-----SQLQALGYQVDLSGEWDNQTKLVVQSFQYHF 319
>gi|259908942|ref|YP_002649298.1| N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia pyrifoliae Ep1/96]
gi|387871859|ref|YP_005803234.1| N-acetylmuramoyl-L-alanine amidase [Erwinia pyrifoliae DSM 12163]
gi|224964564|emb|CAX56077.1| N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia pyrifoliae Ep1/96]
gi|283478947|emb|CAY74863.1| N-acetylmuramoyl-L-alanine amidase [Erwinia pyrifoliae DSM 12163]
Length = 280
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 28/280 (10%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
P + GY++D Y +R +K L++HYT +F + T
Sbjct: 24 PQGLQPHQGYMVD------TREEAYGARP--RIKVLVIHYTAGDFPRSLNVLTDRSV--- 72
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY++ KY V ++VP++M AWHAGI WR LN SIGI L N G
Sbjct: 73 -SAHYLLPAAPPKYDGQPLVWRLVPESMLAWHAGISFWRGATRLNDTSIGIELENPGW-H 130
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++ PF Q+ L L +DIV ++ I PQ V+ H+DIAP K DPGPLFPW +
Sbjct: 131 RTDSGVSWAPFPAAQMAALLPLMRDIVQRYAISPQDVVAHSDIAPLRKQDPGPLFPW-RW 189
Query: 182 YLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKR 237
G+GAW D V + RP +++D+ L LL +YGY+V +
Sbjct: 190 LAGQGVGAWPDDDR------VAYYLAGRPASQRVDKTKLLGLLASYGYDVPGKMMPYQLQ 243
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
++I AF+ HF + R AD TE + A AL+ KYG+
Sbjct: 244 ALIAAFQMHFRPSDY--RGIADAETEAI--AAALLEKYGA 279
>gi|399019291|ref|ZP_10721440.1| negative regulator of beta-lactamase expression [Herbaspirillum sp.
CF444]
gi|398098438|gb|EJL88725.1| negative regulator of beta-lactamase expression [Herbaspirillum sp.
CF444]
Length = 276
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 130/277 (46%), Gaps = 25/277 (9%)
Query: 8 MPGYVIDPFP----EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHS 63
+ G + PFP +++ ++ H +++L+ HYT + I T +
Sbjct: 12 ISGCAVTPFPIDRGDYKADQTHPAVAQNERIRFLVFHYTALDDQKSIDVLTGPNVSAHYL 71
Query: 64 SHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK 123
+ V + GK + +Q+V + RAWHAG+ W NLN SIGI +VN G E
Sbjct: 72 APTVPAIDNGKPV----ALQMVAEEKRAWHAGVSNWGNRSNLNDTSIGIEIVNPGYTDEG 127
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+Y + Q+ +G L DI+S+++I P+ VL H+DIAP K DPGP FPW L
Sbjct: 128 AER-RWYDYAPGQMDLIGKLALDIISRYQIAPENVLAHSDIAPQRKYDPGPRFPWQALSR 186
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRS 238
GIGAW PDE+ VE K+ R L+ YGY V T R
Sbjct: 187 Q-GIGAW--PDELVVE----KYLAGRLLLEPASVANIQAALEEYGYTVPQTGVLDEETRK 239
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
VI AF+ HF P+ I D + A ALV KY
Sbjct: 240 VISAFQMHF----RPQNIRGDADAQTEAIALALVEKY 272
>gi|161503940|ref|YP_001571052.1| hypothetical protein SARI_02031 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865287|gb|ABX21910.1| hypothetical protein SARI_02031 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 276
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 125/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPAIPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--WNGIADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ AL+ KYG
Sbjct: 264 AIV--KALLEKYGQ 275
>gi|254252496|ref|ZP_04945814.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia dolosa AUO158]
gi|124895105|gb|EAY68985.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia dolosa AUO158]
Length = 285
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 137/255 (53%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDEAKSLRTLTGDSV----SVHYVVPPQPHIEHGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ +W+R LN++SIGI VN G + + R+ + P+ QI L L KD
Sbjct: 94 ESQRAWHAGVSEWQRTTELNAVSIGIENVNRGPLDPQNRT--WQPYPPEQIDALIRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYAISPTRVVGHSDIAPQRKIDPGPLFPWQAL-AQAGVGAW--PDDATVAARLAGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P R + +D R + L+L + YGY+V T R V AF+ HF P D
Sbjct: 209 P-RAW---VDVRELQLKLAR-YGYDVPTDGVLDTRTRRVFAAFQMHF----RPSDYAGDP 259
Query: 261 TTEDMFWAWALVAKY 275
+ A AL+ KY
Sbjct: 260 DAQTDAIAQALLDKY 274
>gi|422020659|ref|ZP_16367197.1| hypothetical protein OO9_18236 [Providencia alcalifaciens Dmel2]
gi|414101296|gb|EKT62897.1| hypothetical protein OO9_18236 [Providencia alcalifaciens Dmel2]
Length = 295
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 22/251 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++++LHYTV + AH I T + SSHY+I + + ++Q+VP+ ++AWH
Sbjct: 40 IQFIVLHYTVSDDAHSIKTLTKGKV----SSHYLIPSQPAQKNGQPVILQLVPERLKAWH 95
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W+ LN SIGI +VN G V + + + PF+++QI L L KDI+ ++ I
Sbjct: 96 AGDSRWQYHHGLNDSSIGIEIVNEGFVRKNGQDI-WPPFNDSQIDALIPLLKDIMQRYDI 154
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+GH+DIAP K DPG FPW L L +GIGAW PD TV K+ R
Sbjct: 155 PPENVIGHSDIAPLRKQDPGRAFPWQSLAL-HGIGAW--PDPQTVT----KYLAERQVNA 207
Query: 214 KLDRGIFLELLKAYGY-NVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
++ + LK YGY + T K + +RAF+ H+ P I E
Sbjct: 208 PVNVLNLQKALKFYGYAGIPQTGKLDKETKQTLRAFQMHY----RPRDIDGRPDAETEAI 263
Query: 268 AWALVAKYGSM 278
A AL+ KY +M
Sbjct: 264 ALALIEKYRNM 274
>gi|385787883|ref|YP_005818992.1| N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia sp. Ejp617]
gi|310767155|gb|ADP12105.1| N-acetylmuramoyl-L-alanine amidase YbjR [Erwinia sp. Ejp617]
Length = 271
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 28/280 (10%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
P + GY++D Y +R +K L++HYT +F + T
Sbjct: 15 PQGLQPHQGYMVD------TREEAYGARP--RIKVLVIHYTAGDFPRSLNVLTDRSV--- 63
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY++ KY V ++VP++M AWHAGI WR LN SIGI L N G
Sbjct: 64 -SAHYLLPAAPPKYDGQPLVWRLVPESMLAWHAGISFWRGATRLNDTSIGIELENPGW-H 121
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++ PF Q+ L L +DIV ++ I PQ V+ H+DIAP K DPGPLFPW +
Sbjct: 122 RTDSGVSWAPFPAAQMAALLPLMRDIVQRYAISPQDVVAHSDIAPLRKQDPGPLFPW-RW 180
Query: 182 YLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKR 237
G+GAW D V + RP +++D+ L LL +YGY+V +
Sbjct: 181 LAGQGVGAWPDDDR------VAYYLAGRPASQRVDKTKLLGLLASYGYDVPGKMMPYQLQ 234
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
++I AF+ HF + R AD TE + A AL+ KYG+
Sbjct: 235 ALIAAFQMHFRPSDY--RGIADAETEAI--AAALLEKYGA 270
>gi|421079006|ref|ZP_15539951.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pectobacterium wasabiae
CFBP 3304]
gi|401706193|gb|EJS96371.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pectobacterium wasabiae
CFBP 3304]
Length = 290
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 136/285 (47%), Gaps = 36/285 (12%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
+PSS+ YV+ E +SR +++L++HYT +FA + T
Sbjct: 33 LPSSLQEQNNYVL----ETALQSRAQESR----IRFLVIHYTAEDFATSLNILTDEHV-- 82
Query: 61 LHSSHYVISE----KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN 116
S+HY+I + GK L Q+VP++ AWHAG WR LN SIGI + N
Sbjct: 83 --SAHYLIPAHPPLQHGKPL----AWQLVPESQAAWHAGASSWRGFSRLNHSSIGIEIEN 136
Query: 117 GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLF 176
G + F +QI + + +DI+ +++I PQ V+ H+DIAP K DPGPLF
Sbjct: 137 AGY-QRTLTGYTWESFTASQIQLVTAITRDIIDRYQIAPQNVVAHSDIAPQRKQDPGPLF 195
Query: 177 PWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----T 232
PW L +GAW PD V + RP + +D + LE L YGY+V T
Sbjct: 196 PWQAL-AQADVGAW--PDAQRVAFYLN----GRPTTQPVDELVLLEKLGRYGYSVPETMT 248
Query: 233 ITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
KR VI AF+ HF P+ + A AL+ KYGS
Sbjct: 249 AREKRQVIAAFQMHF----RPDNYQGQPDAQSEAIADALLEKYGS 289
>gi|188026514|ref|ZP_02962401.2| hypothetical protein PROSTU_04516 [Providencia stuartii ATCC 25827]
gi|188019235|gb|EDU57275.1| N-acetylmuramoyl-L-alanine amidase family protein [Providencia
stuartii ATCC 25827]
Length = 258
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 139/267 (52%), Gaps = 34/267 (12%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG- 79
N Y S G + V++L++HYT NF + A + N A S+HY++ + K Y G
Sbjct: 9 NAYRSIKGFNRRVRFLVMHYTALNFQGSVNALSGNAAV---SAHYLVPDPTDKMYTDAGF 65
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY--PFDE 134
+V +V +N RAWHAG+ W NLN SIGI +VN + + N+ P++E
Sbjct: 66 KEMRVFNLVDENERAWHAGVSAWAGRTNLNDTSIGIEIVNEA----QDNNGNFLFPPYNE 121
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAP-GSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI + L +I+ ++ I P ++GH DIAP G K DPG FPW +LY D GIGAW
Sbjct: 122 VQIEAIKQLALNIIERYPDIIPTNIVGHADIAPDGRKSDPGAAFPWKQLY-DAGIGAWY- 179
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
DE T ++K+ P ++ LE LK YGY+V+ N + +IRAF+ HF
Sbjct: 180 -DEATKSCYMQKYNGGLP-----EKAEILEKLKRYGYDVSKANTDNGYKMLIRAFQLHFR 233
Query: 249 ANQNPERIYADITTEDMFWAWALVAKY 275
PE E + +ALV KY
Sbjct: 234 ----PENYDGIADVETVAIIYALVEKY 256
>gi|440231587|ref|YP_007345380.1| negative regulator of beta-lactamase expression [Serratia
marcescens FGI94]
gi|440053292|gb|AGB83195.1| negative regulator of beta-lactamase expression [Serratia
marcescens FGI94]
Length = 254
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF I + T N S+HY++ + + Y G ++ +V +
Sbjct: 19 VRFLVLHYTAQNFTDSIASLTGNGV----SAHYLVPDPNDAGYQAAGFDGLRIFNLVDEQ 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ +W +LN SIGI +VN + + PFD QI + L ++I+
Sbjct: 75 ERAWHAGVSQWGARNSLNDTSIGIEIVN--LASGDGEDITFPPFDPQQIEAVIQLTRNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+ H+DIAPG K DPGP FPW +LYL G+GAW DE T + ++
Sbjct: 133 QRYPDISPVNVVAHSDIAPGRKSDPGPQFPWHQLYL-AGVGAWY--DEETRQRYQQRCCC 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
P DR L L YGY+V+ R ++RAF+ HF P++ + E
Sbjct: 190 QLP-----DRQQLLALFAKYGYDVSAAGDDEGYRQLVRAFQLHF----RPQKYDGVMDAE 240
Query: 264 DMFWAWALVAKY 275
ALV KY
Sbjct: 241 TAAILQALVEKY 252
>gi|386308372|ref|YP_006004428.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241503|ref|ZP_12868030.1| Negative regulator of beta-lactamase expression [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433549553|ref|ZP_20505597.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica IP
10393]
gi|318605754|emb|CBY27252.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351779046|gb|EHB21170.1| Negative regulator of beta-lactamase expression [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431788688|emb|CCO68637.1| N-acetylmuramoyl-L-alanine amidase [Yersinia enterocolitica IP
10393]
Length = 258
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 136/252 (53%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF + I + T N S HY++ + + Y G ++ +V +N
Sbjct: 19 VRFLVLHYTAENFENSINSLTGNNV----SVHYLVPDLDDDSYKKAGFNNIRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W N+N SIGI +VN + E ++ P+ ENQI + L +I+
Sbjct: 75 ARAWHAGVSSWAGRANINDTSIGIEIVN--LATEHSGVFDFPPYPENQIAAVKQLAANIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P +V+ H+DIAP K DPGP FPW +LY + GIGAW D T E V++F
Sbjct: 133 QRYPDISPTHVVAHSDIAPTRKSDPGPKFPWLELY-NNGIGAWY--DSETKEKFVQQFT- 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
+ P K D L K YGY+++I + + ++RAF+ H ++ I DI T
Sbjct: 189 QQGLPTKAD---LLSYFKTYGYDISIASSDDGYQHLVRAFQLHLRSDNYDGHI--DIETV 243
Query: 264 DMFWAWALVAKY 275
+ +ALV KY
Sbjct: 244 AIL--YALVEKY 253
>gi|387868894|ref|YP_005700363.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda FL6-60]
gi|304560207|gb|ADM42871.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda FL6-60]
Length = 256
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 30/264 (11%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G S V++L++HYT +F +TA T + S+HY+I + E Y+ G
Sbjct: 7 NSYRSVKGFSRRVRFLVMHYTAIDFKASVTALTGSSV----SAHYLIPDPSEKTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAG+ W NLN +IGI VN + E + P++ Q
Sbjct: 63 KDMRIFNLVDENERAWHAGVSSWSGRSNLNDTAIGIETVN--LATENNNIFIFPPYNPEQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIAPG K DPG FPW LY D GIGAW E
Sbjct: 121 IEAIKALATNILQRYPDITPTNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWYQ--E 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQ 251
T++ + +F +R P K D + LK YGY+ T +++IRAF+ HF +
Sbjct: 178 STMQNYLAQF--SRTQPAKAD---IIAKLKTYGYDTSDAGTDNGYKNLIRAFQLHFR-QK 231
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + I AD T + +ALV KY
Sbjct: 232 NYDGI-ADAETAAIL--YALVDKY 252
>gi|384126485|ref|YP_005509099.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis D182038]
gi|420551813|ref|ZP_15049235.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-02]
gi|420557370|ref|ZP_15054127.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-03]
gi|420560741|ref|ZP_15057082.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-04]
gi|420567911|ref|ZP_15063546.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-05]
gi|420571356|ref|ZP_15066701.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|420573613|ref|ZP_15068716.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|420578882|ref|ZP_15073494.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-07]
gi|420589417|ref|ZP_15083019.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-09]
gi|420598094|ref|ZP_15090844.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|420600441|ref|ZP_15092902.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|420616566|ref|ZP_15107313.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-14]
gi|420619818|ref|ZP_15110177.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-15]
gi|420635049|ref|ZP_15123931.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|420637299|ref|ZP_15125926.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|420648035|ref|ZP_15135684.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-32]
gi|420651530|ref|ZP_15138837.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|420653689|ref|ZP_15140760.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|420667384|ref|ZP_15153090.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-45]
gi|420678048|ref|ZP_15162803.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|420680326|ref|ZP_15164823.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|420685604|ref|ZP_15169545.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-48]
gi|420690784|ref|ZP_15174124.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-52]
gi|420696590|ref|ZP_15179207.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-53]
gi|420702094|ref|ZP_15183814.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-54]
gi|420718700|ref|ZP_15198204.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-58]
gi|420722020|ref|ZP_15201062.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|420724265|ref|ZP_15203015.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|420734913|ref|ZP_15212591.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-61]
gi|420745858|ref|ZP_15222263.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-64]
gi|420751526|ref|ZP_15227178.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-65]
gi|420756947|ref|ZP_15231771.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-66]
gi|420762672|ref|ZP_15236546.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-71]
gi|420778339|ref|ZP_15250590.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-88]
gi|420792364|ref|ZP_15263049.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|420794641|ref|ZP_15265068.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|420797548|ref|ZP_15267700.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-92]
gi|420810399|ref|ZP_15279269.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-94]
gi|420824165|ref|ZP_15291667.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|420826337|ref|ZP_15293597.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|420832105|ref|ZP_15298810.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-99]
gi|420836932|ref|ZP_15303166.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-100]
gi|420842088|ref|ZP_15307839.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-101]
gi|420845550|ref|ZP_15310992.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|420847730|ref|ZP_15312923.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|420853189|ref|ZP_15317675.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-103]
gi|420858659|ref|ZP_15322375.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-113]
gi|262366149|gb|ACY62706.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis D182038]
gi|391429114|gb|EIQ90999.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-02]
gi|391430476|gb|EIQ92188.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-03]
gi|391444526|gb|EIR04738.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-05]
gi|391447490|gb|EIR07397.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|391450155|gb|EIR09816.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-04]
gi|391452305|gb|EIR11717.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|391460060|gb|EIR18791.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-07]
gi|391462995|gb|EIR21440.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-09]
gi|391477750|gb|EIR34741.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|391484808|gb|EIR41024.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|391495128|gb|EIR50259.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-14]
gi|391498946|gb|EIR53647.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-15]
gi|391512842|gb|EIR66122.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|391516608|gb|EIR69482.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|391526005|gb|EIR78094.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|391526899|gb|EIR78877.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-32]
gi|391532420|gb|EIR83812.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|391548581|gb|EIR98367.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-45]
gi|391557240|gb|EIS06254.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|391558474|gb|EIS07351.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-48]
gi|391563900|gb|EIS12158.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|391572104|gb|EIS19376.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-52]
gi|391572605|gb|EIS19811.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-53]
gi|391581805|gb|EIS27649.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-54]
gi|391600735|gb|EIS44227.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-58]
gi|391602980|gb|EIS46213.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|391609509|gb|EIS51889.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|391615840|gb|EIS57566.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-61]
gi|391622220|gb|EIS63174.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-64]
gi|391627778|gb|EIS67949.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-65]
gi|391638828|gb|EIS77585.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-66]
gi|391638897|gb|EIS77647.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-71]
gi|391656227|gb|EIS92891.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-88]
gi|391671201|gb|EIT06168.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|391673484|gb|EIT08193.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|391684137|gb|EIT17850.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-94]
gi|391689883|gb|EIT22964.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-92]
gi|391700515|gb|EIT32604.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|391705646|gb|EIT37162.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|391709718|gb|EIT40868.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-99]
gi|391716531|gb|EIT46979.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-100]
gi|391717315|gb|EIT47694.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-101]
gi|391728179|gb|EIT57317.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|391730799|gb|EIT59578.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-103]
gi|391732162|gb|EIT60762.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|391735491|gb|EIT63623.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-113]
Length = 192
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 113/204 (55%), Gaps = 21/204 (10%)
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
+Q+VP+ RAWHAG+ W+ NLN SIGI +VN G EK +YP++E+QI +
Sbjct: 1 MQLVPEAQRAWHAGVSSWQGRNNLNDTSIGIEIVNLGFT-EKMLGRTWYPYNESQIELIE 59
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV ++ I P V+ H+DIAP K DPGPLFPW +L + G+GAW PD+ TV
Sbjct: 60 QLTKDIVQRYNISPSDVVAHSDIAPLRKSDPGPLFPWKRL-AEKGVGAW--PDDATVA-- 114
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERI 256
K+ R + + L AYGY + T R VI+AF+ HF P+
Sbjct: 115 --KYIGGRDKKGAASVAVIQQALAAYGYKIPQNGQLDTETRQVIKAFQMHF----RPQDF 168
Query: 257 YA--DITTEDMFWAWALVAKYGSM 278
D+ TE + A ALV KY ++
Sbjct: 169 SGVPDVETEAI--ALALVEKYRTL 190
>gi|269140391|ref|YP_003297092.1| N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda EIB202]
gi|267986052|gb|ACY85881.1| probable N-acetylmuramoyl-L-alanine amidase [Edwardsiella tarda
EIB202]
Length = 256
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 30/264 (11%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G S V++L++HYT +F +TA T + S+HY+I + E Y+ G
Sbjct: 7 NSYRSVKGFSRRVRFLVMHYTAIDFKASVTALTGSSV----STHYLIPDPSEKTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAG+ W NLN +IGI VN + E + P++ Q
Sbjct: 63 KDMRIFNLVDENERAWHAGVSSWSGRSNLNDTAIGIETVN--LATENNNIFIFPPYNPEQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIAPG K DPG FPW LY D GIGAW E
Sbjct: 121 IEAIKALATNILQRYPDITPTNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWYQ--E 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQ 251
T++ + +F +R P K D + LK YGY+ T +++IRAF+ HF +
Sbjct: 178 STMQNYLAQF--SRTQPAKAD---IIAKLKTYGYDTSDAGTDNGYKNLIRAFQLHFR-QK 231
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + I AD T + +ALV KY
Sbjct: 232 NYDGI-ADAETAAIL--YALVDKY 252
>gi|269121080|ref|YP_003309257.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sebaldella termitidis ATCC 33386]
gi|268614958|gb|ACZ09326.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sebaldella termitidis ATCC 33386]
Length = 276
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 25/220 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++ILHYT + + T + SSHY++++ V +V ++ R+WH
Sbjct: 50 VRFVILHYTAVDKDQSVNILTKQQV----SSHYLVTDD-----SSDPVYNLVSEDNRSWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W R NLN S+GI +VN G G ++YPF ++QI + +L KDI++++ +
Sbjct: 101 AGESSWGRLSNLNDSSVGIEIVNMGYTGTN-GEMSFYPFTDDQIKKVAVLLKDIIARYNL 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP-ARPYP 212
+P +LGH+DIAP K DPGPLFPW +LY DY IG W DE + + + P+
Sbjct: 160 EPTSILGHSDIAPQRKQDPGPLFPWEELYKDYQIGMWY--DEDAKSSFMTSYSTLTTPFE 217
Query: 213 RKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ L+ +GY V T + +VIRAF+ HF
Sbjct: 218 VQTQ-------LEKFGYKVDKTGQYDKQTTNVIRAFQFHF 250
>gi|365969730|ref|YP_004951291.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
EcWSU1]
gi|365748643|gb|AEW72870.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter cloacae
EcWSU1]
Length = 276
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 130/251 (51%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I K ++ Q+VP++ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAKPPAPEGKPRIWQLVPESELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AGI WR +N S+GI L N G G K ++ PF+ QI L L KDI+++
Sbjct: 100 AGISFWRGTNRINDTSVGIELENRGWLKTAGVK----HFTPFEPAQIAALIPLAKDIIAR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ IKPQ V+ H+DIAP K DPGPLFPW +L GIGAW PD + + +P
Sbjct: 156 YDIKPQNVVAHSDIAPQRKDDPGPLFPWREL-AQQGIGAWPDPDRVNF------YLNGQP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+++D + L+LL YGY V T ++ VI AF+ HF P+ E +
Sbjct: 209 RYQEVDSALLLDLLARYGYEVPEAATAQQQKRVITAFQMHF----RPQLWNGVADRETLA 264
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 265 IAEALLEKYGQ 275
>gi|212710578|ref|ZP_03318706.1| hypothetical protein PROVALCAL_01641 [Providencia alcalifaciens DSM
30120]
gi|212686815|gb|EEB46343.1| hypothetical protein PROVALCAL_01641 [Providencia alcalifaciens DSM
30120]
Length = 295
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 22/251 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++++LHYTV + AH I T + SSHY+I + + ++Q+VP+ ++AWH
Sbjct: 40 IQFIVLHYTVSDDAHSIKTLTKGKV----SSHYLIPSQPAQKNGQPVILQLVPERLKAWH 95
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W+ LN SIGI +VN G V + + + PF+++QI L L KDI+ ++ I
Sbjct: 96 AGDSRWQYHHGLNDSSIGIEIVNEGFVRKNGQDI-WPPFNDSQIDALIPLLKDIMQRYDI 154
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+GH+DIAP K DPG FPW L L +GIGAW PD TV K+ R
Sbjct: 155 PPENVIGHSDIAPLRKQDPGRAFPWQSLAL-HGIGAW--PDPQTVT----KYLADRQVNA 207
Query: 214 KLDRGIFLELLKAYGY-NVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
++ + LK YGY + T K + +RAF+ H+ P I E
Sbjct: 208 PVNVLNLQKALKFYGYAGIPQTGKLDKETKQTLRAFQMHY----RPRDIDGRPDAETEAI 263
Query: 268 AWALVAKYGSM 278
A AL+ KY +M
Sbjct: 264 ALALIEKYRNM 274
>gi|333368140|ref|ZP_08460355.1| N-acetylmuramoyl-L-alanine amidase [Psychrobacter sp. 1501(2011)]
gi|332977799|gb|EGK14557.1| N-acetylmuramoyl-L-alanine amidase [Psychrobacter sp. 1501(2011)]
Length = 303
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 142/289 (49%), Gaps = 43/289 (14%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
SS G+ ID N+++ ++ ++LHYT N + I T+
Sbjct: 37 SSCVSNTGFFID-------NQSYQSQGKNQRIQSIVLHYTAENESESIRILTTENV---- 85
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I E K + Q+VPDN RAWHAG G++ + LN SIGI +VN G+ +
Sbjct: 86 SAHYLIPLTENK-----TIYQLVPDNERAWHAGAGEFAGRQVLNDTSIGIEIVNEGIKHQ 140
Query: 123 KFRSTN-----YYP------FDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMD 171
+S N Y+P F + QI L L + +V +++IKP ++GH+D+AP K+D
Sbjct: 141 YRKSANKDNDGYHPPKHFVAFSDTQIKKLAHLIQQLVQKYEIKPTQIIGHSDMAPSRKID 200
Query: 172 PGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV 231
PG FPW +LY +YGIGAW + + F+ A K +L + YGY +
Sbjct: 201 PGAKFPWERLYKEYGIGAWYDEADKQRFMVDGSFETATTPEIK-------QLFRDYGYAI 253
Query: 232 TITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
++ R+VI AF+ HF P+++ + E AL KY
Sbjct: 254 NDSDDWDKPSRNVIYAFQLHF----RPQKLTGKMDLETYAILRALHNKY 298
>gi|397167739|ref|ZP_10491179.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter radicincitans
DSM 16656]
gi|396090557|gb|EJI88127.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter radicincitans
DSM 16656]
Length = 275
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 129/267 (48%), Gaps = 25/267 (9%)
Query: 20 EKNRNHYDSRDGMS-----VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
+KN D+R +K L++HYT +F + T + S+HY++ +
Sbjct: 24 DKNGYQLDTRRQAQAAYPRIKVLVIHYTADDFDVSLATLTDKQV----SAHYLVPARPPL 79
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
Y ++ Q+VP+ AWHAG+ WR +N SIGI L N G + T + PF
Sbjct: 80 YHGKPRIWQLVPEQDLAWHAGVSFWRGATRINDTSIGIELENRGWQRSEGGKT-FAPFAP 138
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L KDI+S++ I PQ V+ H DIAP K DPGPLFPW L GIGAW PD
Sbjct: 139 EQISALIPLVKDIISRYNIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PD 195
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSAN 250
V + P +P ++ L+LL YGY V T ++ VI AF+ HF
Sbjct: 196 AARVAFYLNGRSPHQP----VETASLLDLLARYGYEVKPEMTSAQQKRVIEAFQMHF--- 248
Query: 251 QNPERIYADITTEDMFWAWALVAKYGS 277
P + E A AL+ KYG
Sbjct: 249 -RPGLWHGVADAESQAIAEALLEKYGQ 274
>gi|386742890|ref|YP_006216069.1| N-acetylmuramoyl-L-alanine amidase [Providencia stuartii MRSN 2154]
gi|384479583|gb|AFH93378.1| N-acetylmuramoyl-L-alanine amidase [Providencia stuartii MRSN 2154]
Length = 256
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 139/267 (52%), Gaps = 34/267 (12%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG- 79
N Y S G + V++L++HYT NF + A + N A S+HY++ + K Y G
Sbjct: 7 NAYRSIKGFNRRVRFLVMHYTALNFQGSVNALSGNAAV---SAHYLVPDPTDKMYTDAGF 63
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY--PFDE 134
+V +V +N RAWHAG+ W NLN SIGI +VN + + N+ P++E
Sbjct: 64 KEMRVFNLVDENERAWHAGVSAWAGRTNLNDTSIGIEIVNEA----QDNNGNFLFPPYNE 119
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAP-GSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI + L +I+ ++ I P ++GH DIAP G K DPG FPW +LY D GIGAW
Sbjct: 120 VQIEAIKQLALNIIERYPDIIPTNIVGHADIAPDGRKSDPGAAFPWKQLY-DAGIGAWY- 177
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
DE T ++K+ P ++ LE LK YGY+V+ N + +IRAF+ HF
Sbjct: 178 -DEATKSCYMQKYNGGLP-----EKAEILEKLKRYGYDVSKANTDNGYKMLIRAFQLHFR 231
Query: 249 ANQNPERIYADITTEDMFWAWALVAKY 275
PE E + +ALV KY
Sbjct: 232 ----PENYDGIADVETVAIIYALVEKY 254
>gi|406025183|ref|YP_006705484.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cardinium endosymbiont
cEper1 of Encarsia pergandiella]
gi|404432782|emb|CCM10064.1| N-acetylmuramoyl-L-alanine amidase AmiD [Cardinium endosymbiont
cEper1 of Encarsia pergandiella]
Length = 269
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 24/220 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG-KVIQIVPDNMRAW 92
+ L++HYT + +TA T S+HY++ + L G KV +VPD+ R+W
Sbjct: 41 ISSLVMHYTALDLEESLTALTGQFTG--VSAHYLVPKTA---LDGARKVFNLVPDHKRSW 95
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ W+ NLN SIGI +VN G E + + PF + QI T+ LL K IV +
Sbjct: 96 HAGVSAWKNRTNLNDTSIGIEIVNLGYKDENGKRI-WEPFTDYQIETIILLAKQIVQDYG 154
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP ++GH DIAPG K DPGP FPW KLY + G+GA+ E+ ++ +
Sbjct: 155 IKPTNIVGHADIAPGRKQDPGPFFPWKKLY-ENGVGAFYDASELDLKQKIN--------- 204
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+D + LK YGY V IT + R+ + +F+ HF
Sbjct: 205 --IDIEQLQKDLKTYGYPVNITGTLDIDTRNTLISFQMHF 242
>gi|354722742|ref|ZP_09036957.1| N-acetylmuramoyl-L-alanine amidase AmiD [Enterobacter mori LMG
25706]
Length = 276
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 129/251 (51%), Gaps = 26/251 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
+K L++HYT +F + T SSHY+I P GK + Q+VP++ A
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAIPPA--PDGKPRIWQLVPESELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQ 150
WHAGI WR +N S+GI L N G +K ++ PF+ QI L L KDI+++
Sbjct: 98 WHAGISFWRGTNRINDTSVGIELENRG--WQKTSGVKHFTPFEPAQIAALVPLAKDIITR 155
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I+P+ V+ H+DIAP K DPGPLFPW +L L GIGAW PD V + RP
Sbjct: 156 YNIRPENVVAHSDIAPQRKDDPGPLFPWRQLALQ-GIGAW--PDAGRVAF----YMNGRP 208
Query: 211 YPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ +D L+LL YGY V T ++ +I F+ HF P+ E M
Sbjct: 209 PYQVVDTAALLDLLARYGYEVPDNSTPAQQKRIIMVFQMHF----RPQLWNGVADVETMA 264
Query: 267 WAWALVAKYGS 277
A AL+ KYG
Sbjct: 265 IAEALLEKYGQ 275
>gi|197285459|ref|YP_002151331.1| N-acetylmuramoyl-L-alanine amidase [Proteus mirabilis HI4320]
gi|194682946|emb|CAR43344.1| probable N-acetylmuramoyl-L-alanine amidase [Proteus mirabilis
HI4320]
Length = 294
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 120/220 (54%), Gaps = 19/220 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
VK+L++HYT + + TS SSHY+I K Y+ G V+ +V ++ RAW
Sbjct: 47 VKFLVMHYTAVDDKESLKTLTSGNV----SSHYLIPTKP-NYVDGKPVVFALVSEDKRAW 101
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ +W LN SIGI +VN G ++ + P+ Q+ T+ ++ KDI+ ++
Sbjct: 102 HAGLSQWGNSAGLNDGSIGIEIVNYGY-NDQGTLREWLPYTAEQLSTITMMMKDIIQRYG 160
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+PQ V+GH+DIAP K+DPGPLFPW +L GIGAW PD+ TV + + P
Sbjct: 161 IEPQNVVGHSDIAPQRKVDPGPLFPWAEL-AKQGIGAW--PDDETVTFYLAGRAASEP-- 215
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+D F LL YGY T + V+ AF+ HF
Sbjct: 216 --VDIANFQTLLAKYGYQTPTTGILDPETQKVVSAFQMHF 253
>gi|300723591|ref|YP_003712896.1| amidase [Xenorhabdus nematophila ATCC 19061]
gi|297630113|emb|CBJ90750.1| putative amidase [Xenorhabdus nematophila ATCC 19061]
Length = 277
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 137/275 (49%), Gaps = 33/275 (12%)
Query: 16 FPEWEKNRNHY---------DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
FPE E +RN+Y ++D SV+ L+LHYT N I A T S+HY
Sbjct: 20 FPERE-DRNNYIVDHSYPYTTNQDIDSVRVLVLHYTALNDKRSIRALTGGEV----STHY 74
Query: 67 VISEKEGKYLPGGKVI-QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFR 125
+I + KY VI Q+VP+N +AWHAG +W +NLN SIGI +VN G ++F
Sbjct: 75 LIPS-QPKYEKKEPVIFQLVPENQKAWHAGKSEWNGYQNLNRYSIGIEIVNCGF-KQQFI 132
Query: 126 STNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDY 185
+ + +QI + L KD++ +++IK V+GH+DIAP K DPGP FPW LY
Sbjct: 133 KKEWCSYHPSQIDAVIRLAKDVIQRYQIKAINVVGHSDIAPLRKEDPGPFFPWQLLYTQ- 191
Query: 186 GIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVI 240
GIGAW P+ MTV + P P + L YGY++ T R I
Sbjct: 192 GIGAW--PEHMTVNKYLAGRAPDTP----ASVISIQKALSLYGYSIPQTGILDTATRKTI 245
Query: 241 RAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
+ F+ HF P I E A AL+ KY
Sbjct: 246 QVFQMHF----RPSDISGMPDAETEAIALALIEKY 276
>gi|429114911|ref|ZP_19175829.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 701]
gi|426318040|emb|CCK01942.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter sakazakii 701]
Length = 231
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 124/250 (49%), Gaps = 30/250 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRAWHA 94
L++HYT +F + T SSHY+I + GGK + Q+VP+ AWHA
Sbjct: 2 LVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPQK--GGKSVIWQLVPERELAWHA 55
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
G+ + LN S+GI L N G + G+K Y+PF QI L L +DI+ ++
Sbjct: 56 GVSFFSGATRLNDTSVGIELENYGYRKIDGQK----QYFPFSPPQIAVLSKLARDIIQRY 111
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
+I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P P
Sbjct: 112 QIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDESRVAFYLAGRNPYTP- 167
Query: 212 PRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
+D L+LL YGY VT ++ VI+AF+ HF P R +
Sbjct: 168 ---VDEATLLDLLARYGYEVTPQMSEAQRKRVIQAFQMHF----RPARYDGLPDAQSEAI 220
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 221 AEALLEKYGQ 230
>gi|418020332|ref|ZP_12659620.1| Negative regulator of beta-lactamase [Candidatus Regiella
insecticola R5.15]
gi|347604315|gb|EGY28993.1| Negative regulator of beta-lactamase [Candidatus Regiella
insecticola R5.15]
Length = 275
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 121/249 (48%), Gaps = 21/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V L LHYT N I T + S+HY++ E K V+Q+V + RAWH
Sbjct: 42 VSSLFLHYTALNDEKSIKVLTQGQV----SAHYLVLEYPEKERGKPVVLQLVGEENRAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ WR NLN SIGI +VN G + F +YPF+ QI + L KDIV ++K+
Sbjct: 98 AGVSNWRGRSNLNDSSIGIEIVNLGYT-KTFFGKKWYPFNPQQIELITHLTKDIVKRYKL 156
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+ H+DIAP K DPGPLFPW L G+GAW PD E +V+K+ R
Sbjct: 157 DPTNVIAHSDIAPLRKSDPGPLFPWKGL-ASIGVGAW--PD----ENVVKKYIAQRDKYA 209
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+ L YGY + T + + VI AF+ HF P E A
Sbjct: 210 IASVSEIQKALAKYGYTIPQTGELDKETKRVISAFQMHF----RPADFSGTPDAETEAIA 265
Query: 269 WALVAKYGS 277
ALV KY S
Sbjct: 266 LALVEKYRS 274
>gi|395231569|ref|ZP_10409855.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter sp. A1]
gi|421846603|ref|ZP_16279750.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|424730553|ref|ZP_18159149.1| n-acetylmuramoyl-l-alanine amidase [Citrobacter sp. L17]
gi|394714555|gb|EJF20471.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter sp. A1]
gi|411772197|gb|EKS55835.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|422895123|gb|EKU34913.1| n-acetylmuramoyl-l-alanine amidase [Citrobacter sp. L17]
gi|455646157|gb|EMF25200.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citrobacter freundii GTC
09479]
Length = 276
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 123/249 (49%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKNV----SSHYLIPAVPPLYHGKPRIWQLVPEKDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISFWRGATRINDTSIGIELENRG--WQKSAGIKYFAPFEPAQIQALIPLAKDIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKPQ V+ H DIAP K DPGPLFPW K+ + GIGAW PD V + P P
Sbjct: 158 IKPQNVVAHADIAPQRKDDPGPLFPW-KVLAEQGIGAW--PDTQRVAFYLAGRAPHTPVA 214
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+ L+LL YGY + T ++ VI AF+ HF P E A
Sbjct: 215 TE----SLLDLLSRYGYEIKSDMTPREQQRVIMAFQMHF----RPTLWNGVADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>gi|425072139|ref|ZP_18475245.1| hypothetical protein HMPREF1310_01570 [Proteus mirabilis WGLW4]
gi|404597942|gb|EKA98435.1| hypothetical protein HMPREF1310_01570 [Proteus mirabilis WGLW4]
Length = 294
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 120/220 (54%), Gaps = 19/220 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
VK+L++HYT + + TS SSHY+I K Y+ G V+ +V ++ RAW
Sbjct: 47 VKFLVMHYTAVDDKESLKTLTSGNV----SSHYLIPTKP-NYVDGKPVVFALVSEDKRAW 101
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ +W LN SIGI +VN G ++ + P+ Q+ T+ ++ KDI+ ++
Sbjct: 102 HAGLSQWGNSAGLNDGSIGIEIVNYGY-KDQGTLREWLPYTAEQLSTITMMMKDIIQRYG 160
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+PQ V+GH+DIAP K+DPGPLFPW +L GIGAW PD+ TV + + P
Sbjct: 161 IEPQNVVGHSDIAPQRKVDPGPLFPWAEL-AKQGIGAW--PDDETVTFYLAGRAASEP-- 215
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+D F LL YGY T + V+ AF+ HF
Sbjct: 216 --VDIANFQTLLAKYGYQTPTTGILDPETQKVVSAFQMHF 253
>gi|15893281|ref|NP_360995.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia conorii str. Malish
7]
gi|15620502|gb|AAL03896.1| ampD protein homolog [Rickettsia conorii str. Malish 7]
Length = 247
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAVIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|227355945|ref|ZP_03840337.1| N-acetylmuramoyl-L-alanine amidase [Proteus mirabilis ATCC 29906]
gi|227163933|gb|EEI48835.1| N-acetylmuramoyl-L-alanine amidase [Proteus mirabilis ATCC 29906]
Length = 300
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 120/220 (54%), Gaps = 19/220 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
VK+L++HYT + + TS SSHY+I K Y+ G V+ +V ++ RAW
Sbjct: 53 VKFLVMHYTAVDDKESLKTLTSGNV----SSHYLIPTKP-NYVDGKPVVFALVSEDKRAW 107
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ +W LN SIGI +VN G ++ + P+ Q+ T+ ++ KDI+ ++
Sbjct: 108 HAGLSQWGNSAGLNDGSIGIEIVNYGY-KDQGTLREWLPYTAEQLSTITMMMKDIIQRYG 166
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+PQ V+GH+DIAP K+DPGPLFPW +L GIGAW PD+ TV + + P
Sbjct: 167 IEPQNVVGHSDIAPQRKVDPGPLFPWAEL-AKQGIGAW--PDDETVTFYLAGRAASEP-- 221
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+D F LL YGY T + V+ AF+ HF
Sbjct: 222 --VDIANFQTLLAKYGYQTPTTGILDPETQKVVSAFQMHF 259
>gi|238753529|ref|ZP_04614891.1| hypothetical protein yruck0001_12570 [Yersinia ruckeri ATCC 29473]
gi|238708081|gb|EEQ00437.1| hypothetical protein yruck0001_12570 [Yersinia ruckeri ATCC 29473]
Length = 260
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 136/264 (51%), Gaps = 30/264 (11%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + V++LILHYTV +F IT T + SSHY+I + + Y+ G
Sbjct: 12 NSYRSVKGFNKRVRFLILHYTVVDFVGAITVLTGSTV----SSHYLIPDPTDPGYIAAGF 67
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAGI W NLN SIGI LVN + + S + P+++ Q
Sbjct: 68 DGLRIFNLVDENDRAWHAGISHWHDRTNLNDSSIGIELVNQAI--DNKGSFTFPPYNDEQ 125
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I L L +I+ ++ I P +VL H+DI+ G K DPG FPW +LY+ GIGAW D+
Sbjct: 126 IEALKDLAFNILQRYPDITPTHVLAHSDISLGRKSDPGAAFPWYELYM-CGIGAWY--DD 182
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
T + KF P ++ L L K YGY+V+ ++R F+ HF
Sbjct: 183 ETKDKYELKFSKCIPPKSEV-----LHLFKTYGYDVSHAESDLGLEILVRGFQLHF---- 233
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
PE I +E M ALV KY
Sbjct: 234 RPECYDGIIDSETMAILAALVEKY 257
>gi|379714247|ref|YP_005302585.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia massiliae str.
AZT80]
gi|376334893|gb|AFB32125.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia massiliae str.
AZT80]
Length = 247
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 126/248 (50%), Gaps = 29/248 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + TS + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTSEKL----SSHYLINNENPEH-----IFQLVEEHDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGQERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQI 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTGILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKY 275
AL+ KY
Sbjct: 235 LDALILKY 242
>gi|448243064|ref|YP_007407117.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia marcescens WW4]
gi|445213428|gb|AGE19098.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia marcescens WW4]
Length = 255
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 134/255 (52%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIV 85
G V++L+LHYT NFA +T+ T S+HY++ + + Y G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVTSLTGKSV----SAHYLVPDPTDATYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W N+N SIGI +VN + + + PF+ QI + L +
Sbjct: 72 DENERAWHAGTSQWGTRSNINDTSIGIEIVN--LASGDGGNITFPPFNPQQIEAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +LY G+GAW DE T + ++
Sbjct: 130 NILQRYPDISPVNVVAHSDIAPGRKSDPGPQFPWQQLY-QAGVGAWY--DEATKQQRQQE 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
+ ++ P + + L+L YGY+ + N R ++RAF+ HF P++ +
Sbjct: 187 YC-SQGLPAQAE---LLKLFAQYGYDTSAANTAEGYRQLVRAFQLHF----RPQKYDGVM 238
Query: 261 TTEDMFWAWALVAKY 275
E ALV KY
Sbjct: 239 DVETAAVLRALVDKY 253
>gi|299132094|ref|ZP_07025289.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Afipia sp. 1NLS2]
gi|298592231|gb|EFI52431.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Afipia sp. 1NLS2]
Length = 252
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 28/227 (12%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D RDG V ++LHYT A + + SSHYV+ E G+++Q+
Sbjct: 19 NFDERDGSPVDVVVLHYTGMPEEEAALARLCDPEAKV-SSHYVVRES-------GEIVQL 70
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V ++ RAWHAG+ +WR LN+ SIGI +VN G G PF + QI + L
Sbjct: 71 VAEDKRAWHAGVSRWREWSGLNARSIGIEIVNPGHDG------GCPPFPDAQIDAVIALT 124
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
DI ++ + VL H+DIAP K DPG FPW +L + G+G W++P ++ E
Sbjct: 125 SDITARRALPRDQVLAHSDIAPLRKQDPGEWFPWERLAAE-GVGLWVAPAPLSDEGF--- 180
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITN----KRSVIRAFKTHF 247
PR+LD F+E L YGY V +++ K++V+ AF+ HF
Sbjct: 181 ----EANPRELD--AFVEALATYGYGVALSDPCETKQAVVAAFQRHF 221
>gi|17986848|ref|NP_539482.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella melitensis bv.
1 str. 16M]
gi|23502315|ref|NP_698442.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis 1330]
gi|62290337|ref|YP_222130.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 1 str.
9-941]
gi|82700260|ref|YP_414834.1| peptidoglycan binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|148559422|ref|YP_001259335.1| N-acetylmuramoyl-L-alanine amidase [Brucella ovis ATCC 25840]
gi|163843698|ref|YP_001628102.1| protein ampD [Brucella suis ATCC 23445]
gi|189024568|ref|YP_001935336.1| peptidoglycan binding domain 1 [Brucella abortus S19]
gi|225852925|ref|YP_002733158.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Brucella
melitensis ATCC 23457]
gi|237815842|ref|ZP_04594839.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str.
2308 A]
gi|256263595|ref|ZP_05466127.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str.
63/9]
gi|256369860|ref|YP_003107371.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM
4915]
gi|260546877|ref|ZP_05822616.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC
8038]
gi|260565329|ref|ZP_05835813.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
bv. 1 str. 16M]
gi|260566052|ref|ZP_05836522.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4
str. 40]
gi|260755165|ref|ZP_05867513.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6
str. 870]
gi|260758384|ref|ZP_05870732.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4
str. 292]
gi|260762210|ref|ZP_05874553.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2
str. 86/8/59]
gi|260884179|ref|ZP_05895793.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str.
C68]
gi|261214427|ref|ZP_05928708.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3
str. Tulya]
gi|261219206|ref|ZP_05933487.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M13/05/1]
gi|261315618|ref|ZP_05954815.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
M163/99/10]
gi|261318055|ref|ZP_05957252.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
B2/94]
gi|261322267|ref|ZP_05961464.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M644/93/1]
gi|261325507|ref|ZP_05964704.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33]
gi|261752734|ref|ZP_05996443.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5
str. 513]
gi|261755394|ref|ZP_05999103.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3
str. 686]
gi|265984481|ref|ZP_06097216.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13]
gi|265989088|ref|ZP_06101645.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
M292/94/1]
gi|265991501|ref|ZP_06104058.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
bv. 1 str. Rev.1]
gi|265995339|ref|ZP_06107896.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str.
Ether]
gi|294852769|ref|ZP_06793442.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026]
gi|297248723|ref|ZP_06932441.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str.
B3196]
gi|306839252|ref|ZP_07472069.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653]
gi|340791052|ref|YP_004756517.1| N-acetylmuramoyl-L-alanine amidase [Brucella pinnipedialis B2/94]
gi|376272823|ref|YP_005151401.1| N-acetylmuramoyl-L-alanine amidase family protein [Brucella abortus
A13334]
gi|376275943|ref|YP_005116382.1| N-acetylmuramoyl-L-alanine amidase family protein [Brucella canis
HSK A52141]
gi|376281107|ref|YP_005155113.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis VBI22]
gi|384211811|ref|YP_005600893.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Brucella
melitensis M5-90]
gi|384225101|ref|YP_005616265.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis 1330]
gi|384408920|ref|YP_005597541.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28]
gi|384445483|ref|YP_005604202.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella melitensis NI]
gi|423166483|ref|ZP_17153186.1| hypothetical protein M17_00173 [Brucella abortus bv. 1 str. NI435a]
gi|423171142|ref|ZP_17157817.1| hypothetical protein M19_01675 [Brucella abortus bv. 1 str. NI474]
gi|423172775|ref|ZP_17159446.1| hypothetical protein M1A_00173 [Brucella abortus bv. 1 str. NI486]
gi|423178531|ref|ZP_17165175.1| hypothetical protein M1E_02771 [Brucella abortus bv. 1 str. NI488]
gi|423180572|ref|ZP_17167213.1| hypothetical protein M1G_01672 [Brucella abortus bv. 1 str. NI010]
gi|423183704|ref|ZP_17170341.1| hypothetical protein M1I_01673 [Brucella abortus bv. 1 str. NI016]
gi|423185356|ref|ZP_17171970.1| hypothetical protein M1K_00174 [Brucella abortus bv. 1 str. NI021]
gi|423188491|ref|ZP_17175101.1| hypothetical protein M1M_00173 [Brucella abortus bv. 1 str. NI259]
gi|17982484|gb|AAL51746.1| anhydro-n-acetylmuramyl-tripeptide amidase [Brucella melitensis bv.
1 str. 16M]
gi|23348293|gb|AAN30357.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella suis 1330]
gi|62196469|gb|AAX74769.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella abortus bv.
1 str. 9-941]
gi|82616361|emb|CAJ11418.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine
amidase, family 2 [Brucella melitensis biovar Abortus
2308]
gi|148370679|gb|ABQ60658.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella ovis ATCC
25840]
gi|163674421|gb|ABY38532.1| Protein ampD [Brucella suis ATCC 23445]
gi|189020140|gb|ACD72862.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19]
gi|225641290|gb|ACO01204.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
ATCC 23457]
gi|237789140|gb|EEP63351.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str.
2308 A]
gi|256000023|gb|ACU48422.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM
4915]
gi|260095927|gb|EEW79804.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC
8038]
gi|260151397|gb|EEW86491.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
bv. 1 str. 16M]
gi|260155570|gb|EEW90650.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4
str. 40]
gi|260668702|gb|EEX55642.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4
str. 292]
gi|260672642|gb|EEX59463.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2
str. 86/8/59]
gi|260675273|gb|EEX62094.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6
str. 870]
gi|260873707|gb|EEX80776.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str.
C68]
gi|260916034|gb|EEX82895.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3
str. Tulya]
gi|260924295|gb|EEX90863.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M13/05/1]
gi|261294957|gb|EEX98453.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M644/93/1]
gi|261297278|gb|EEY00775.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
B2/94]
gi|261301487|gb|EEY04984.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33]
gi|261304644|gb|EEY08141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
M163/99/10]
gi|261742487|gb|EEY30413.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5
str. 513]
gi|261745147|gb|EEY33073.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3
str. 686]
gi|262766452|gb|EEZ12241.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str.
Ether]
gi|263002285|gb|EEZ14860.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
bv. 1 str. Rev.1]
gi|263093644|gb|EEZ17649.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str.
63/9]
gi|264661285|gb|EEZ31546.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis
M292/94/1]
gi|264663073|gb|EEZ33334.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13]
gi|294821358|gb|EFG38357.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026]
gi|297175892|gb|EFH35239.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str.
B3196]
gi|306405799|gb|EFM62061.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653]
gi|326409467|gb|ADZ66532.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28]
gi|326539174|gb|ADZ87389.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis
M5-90]
gi|340559511|gb|AEK54749.1| N-acetylmuramoyl-L-alanine amidase [Brucella pinnipedialis B2/94]
gi|343383281|gb|AEM18773.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis 1330]
gi|349743472|gb|AEQ09015.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella melitensis NI]
gi|358258706|gb|AEU06441.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis VBI22]
gi|363400429|gb|AEW17399.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus
A13334]
gi|363404510|gb|AEW14805.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella canis HSK
A52141]
gi|374538476|gb|EHR09984.1| hypothetical protein M19_01675 [Brucella abortus bv. 1 str. NI474]
gi|374543967|gb|EHR15445.1| hypothetical protein M17_00173 [Brucella abortus bv. 1 str. NI435a]
gi|374544294|gb|EHR15771.1| hypothetical protein M1A_00173 [Brucella abortus bv. 1 str. NI486]
gi|374545312|gb|EHR16775.1| hypothetical protein M1E_02771 [Brucella abortus bv. 1 str. NI488]
gi|374548103|gb|EHR19555.1| hypothetical protein M1G_01672 [Brucella abortus bv. 1 str. NI010]
gi|374548532|gb|EHR19980.1| hypothetical protein M1I_01673 [Brucella abortus bv. 1 str. NI016]
gi|374559053|gb|EHR30442.1| hypothetical protein M1M_00173 [Brucella abortus bv. 1 str. NI259]
gi|374560066|gb|EHR31449.1| hypothetical protein M1K_00174 [Brucella abortus bv. 1 str. NI021]
Length = 268
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVISEKEGKYL 76
E + + N RDG +LILHYT A A ++ + S+HYV+ E
Sbjct: 26 ELDPSPNFGPRRDGKQPVFLILHYT--GLATAKEAMDVLKSPEMEVSAHYVVHED----- 78
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G+V+Q+V + RAWHAG W+ + ++NS SIGI +VN GV+ NY PF + Q
Sbjct: 79 --GRVVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGVL------ENYPPFHDAQ 130
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I + L +DI + +I+P+ VL H+DIAP K DPG FPW +L+ D GIG ++ P +
Sbjct: 131 IEAVIRLCQDICKRHEIRPENVLAHSDIAPARKTDPGQSFPWKRLH-DAGIGHYVEPTPI 189
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+ + + +P +L YGY + IT VI+AF+ HF Q
Sbjct: 190 CGGRFLARGEQGQPVE------ALQSMLALYGYEIAITGIFDEATEIVIKAFQRHFRP-Q 242
Query: 252 NPERIYADITTEDMFW 267
N + + AD++T D +
Sbjct: 243 NVDGV-ADVSTIDTLY 257
>gi|225627891|ref|ZP_03785927.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella ceti str.
Cudo]
gi|261222586|ref|ZP_05936867.1| N-acetylmuramoyl-L-alanine amidase [Brucella ceti B1/94]
gi|261758622|ref|ZP_06002331.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. F5/99]
gi|265998551|ref|ZP_06111108.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M490/95/1]
gi|225617054|gb|EEH14100.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella ceti str.
Cudo]
gi|260921170|gb|EEX87823.1| N-acetylmuramoyl-L-alanine amidase [Brucella ceti B1/94]
gi|261738606|gb|EEY26602.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. F5/99]
gi|262553175|gb|EEZ09009.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti
M490/95/1]
Length = 268
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVISEKEGKYL 76
E + + N RDG +LILHYT A A ++ + S+HYV+ E
Sbjct: 26 ELDPSPNFGPRRDGKQPVFLILHYT--GLATAKEAMDVLKSPEMEVSAHYVVHED----- 78
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G+V+Q+V + RAWHAG W+ + ++NS SIGI +VN GV+ NY PF + Q
Sbjct: 79 --GRVVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGVL------ENYPPFHDAQ 130
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I + L +DI + +I+P+ VL H+DIAP K DPG FPW +L+ D GIG ++ P +
Sbjct: 131 IEAVIRLCQDICKRHEIRPENVLAHSDIAPARKTDPGQSFPWKRLH-DAGIGHYVEPTPI 189
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+ + + +P +L YGY + IT VI+AF+ HF Q
Sbjct: 190 CGGRFLARGEQGQPME------ALQSMLALYGYEIAITGIFDEATEIVIKAFQRHFRP-Q 242
Query: 252 NPERIYADITTEDMFW 267
N + + AD++T D +
Sbjct: 243 NVDGV-ADVSTIDTLY 257
>gi|306843211|ref|ZP_07475823.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2]
gi|306286601|gb|EFM58176.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2]
Length = 268
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVISEKEGKYL 76
E + + N RDG +LILHYT A A ++ + S+HYV+ E
Sbjct: 26 ELDPSPNFGPRRDGKQPVFLILHYT--GLATAKEAMDVLKSPEMEVSAHYVVHED----- 78
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G+V+Q+V + RAWHAG W+ + ++NS SIGI +VN GV+ NY PF + Q
Sbjct: 79 --GRVVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGVL------ENYPPFHDAQ 130
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I + L +DI + +I+P+ VL H+DIAP K DPG FPW +L+ D GIG ++ P +
Sbjct: 131 IEAVIRLCQDICKRHEIRPENVLAHSDIAPARKTDPGQSFPWKRLH-DAGIGHYVEPTPI 189
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+ + + +P +L YGY + IT VI+AF+ HF Q
Sbjct: 190 CGGRFLARGEQGQPVE------ALQSMLALYGYEIAITGIFDEATEIVIKAFQRHFRP-Q 242
Query: 252 NPERIYADITTEDMFW 267
N + + AD++T D +
Sbjct: 243 NVDGV-ADVSTIDTLY 257
>gi|413962451|ref|ZP_11401678.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. SJ98]
gi|413928283|gb|EKS67571.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. SJ98]
Length = 279
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 124/254 (48%), Gaps = 25/254 (9%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIDEAGSLAVLTGDEV----SVHYVVPDAPRIEKGEPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN+ SIGI VN G +G + P+ Q+ L L +D
Sbjct: 95 EDKRAWHAGVSSWQGATELNASSIGIENVNLGPIG-PLSDGKWQPYPPAQVDALIKLSRD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW LY D G+GAW PD+ V +
Sbjct: 154 IVARYHIPPTRVVGHSDIAPQRKIDPGPLFPWHALY-DAGVGAW--PDDAAVATHLAGRD 210
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P P D E L YGY V R V AF+ HF P +
Sbjct: 211 PKAPS----DVRALQEKLNRYGYEVATDGVLDAKTRRVFSAFQMHF----RPSDYAGNAD 262
Query: 262 TEDMFWAWALVAKY 275
E A AL+ +Y
Sbjct: 263 AESDAIAQALLDEY 276
>gi|188533814|ref|YP_001907611.1| N-acetylmuramoyl-L-alanine amidase [Erwinia tasmaniensis Et1/99]
gi|188028856|emb|CAO96718.1| N-acetylmuramoyl-L-alanine amidase [Erwinia tasmaniensis Et1/99]
Length = 289
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 125/263 (47%), Gaps = 21/263 (7%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E+ N + V++L+LHYT + A + T + S+HY++ +
Sbjct: 28 EYRLNTQYPSESQNERVRFLVLHYTAADDAESLRLLTQSGV----SAHYLVPSAADPLMR 83
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
V Q+V ++ RAWHAG+ W NLN SIGI +V+ G + ++YP+++ QI
Sbjct: 84 QNTVYQLVAEDKRAWHAGVSHWNGRSNLNDSSIGIEIVHPGFT-DTPSGRHWYPWNDRQI 142
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ L KDI+ ++ I P V+ H+DIAPG K DPGPLFPW +L + GIGAW D
Sbjct: 143 GLVASLAKDIIQRYAITPDNVVAHSDIAPGRKFDPGPLFPWQQL-AEQGIGAWPDSD--- 198
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQN 252
+V+ + R L YG+ + T R VI AF+ HF
Sbjct: 199 ---LVQHYLAGRSAYAAGSVSKIQADLARYGFTIPQTGIDDSQTRKVISAFQMHF----R 251
Query: 253 PERIYADITTEDMFWAWALVAKY 275
P E A ALVAKY
Sbjct: 252 PTNFTGTADAETEAIAAALVAKY 274
>gi|170732874|ref|YP_001764821.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia MC0-3]
gi|169816116|gb|ACA90699.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia MC0-3]
Length = 290
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + + T + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDETKSLRTLTGDSV----SVHYVVPPQPRAERGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EARRAWHAGVSEWQGTTELNAVSIGIENVNRGPLDPQHRT--WQPYPPEQVDALTRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLAGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY+V T R V AF+ HF P +
Sbjct: 209 PHAP----VDVRELQLKLAR-YGYDVPTDGVLDTRTRRVFAAFQMHF----RPSDYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAESDAIAQALLDKY 274
>gi|421782688|ref|ZP_16219142.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica A30]
gi|407755097|gb|EKF65226.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica A30]
Length = 278
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + Q+VP+ +RAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPLREQGKPVAFQLVPEALRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +LN SIGI +VN G + T++ P+ QI L L +DI+ ++ I
Sbjct: 101 AGASYWRGRTSLNDTSIGIEIVNRGF-SRRMLFTHWQPYTPEQIALLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+GH+DIAP K DPGPLFPW +L + GIGAW E+ R A P
Sbjct: 160 QPTDVVGHSDIAPQRKQDPGPLFPWQQL-AEAGIGAWPDAAEVQRRLAGRDRHAAVPL-- 216
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
LE L YGY V +R+V+ AF+ HF P + E
Sbjct: 217 ----APLLEKLARYGYGVDAQWDARQQRNVLAAFQMHF----RPSDFRGEPDAESEAIVD 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLQKYGA 276
>gi|157804270|ref|YP_001492819.1| lipoyltransferase [Rickettsia canadensis str. McKiel]
gi|379023408|ref|YP_005300069.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia canadensis str.
CA410]
gi|157785533|gb|ABV74034.1| lipoyltransferase [Rickettsia canadensis str. McKiel]
gi|376324346|gb|AFB21587.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia canadensis str.
CA410]
Length = 248
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 129/250 (51%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I++++ ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINDEKPEH-----IFQLVEEHDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFKVDAKNNDVIWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE T F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNSIGAWY--DEQT-------FNELLPQI 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + VI +F+ HF P ++ E +
Sbjct: 179 DITDIMAIQQKFITYGYKLEVTGVLESKMKDVIISFQMHF----RPSNFSGNLDAETVAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|206559921|ref|YP_002230685.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
cenocepacia J2315]
gi|444358883|ref|ZP_21160256.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia BC7]
gi|444365951|ref|ZP_21166052.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia
K56-2Valvano]
gi|198035962|emb|CAR51854.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
cenocepacia J2315]
gi|443603290|gb|ELT71313.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia BC7]
gi|443605330|gb|ELT73188.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia
K56-2Valvano]
Length = 290
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + + T + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDETKSLRTLTGDSV----SVHYVVPPQPRTERGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAGI +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EAQRAWHAGISEWQGTTELNAVSIGIENVNRGPLDPQHRT--WQPYSPEQVDALTRLAKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLGGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 209 PHAP----VDVRDLQLKLAR-YGYDVPTDGVLDARTRRVFAAFQMHF----RPSDYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAESDAIAQALLDKY 274
>gi|107022621|ref|YP_620948.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia AU 1054]
gi|116689570|ref|YP_835193.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia HI2424]
gi|105892810|gb|ABF75975.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia AU 1054]
gi|116647659|gb|ABK08300.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cenocepacia HI2424]
Length = 290
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + + T + S HYVI + + Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDETKSLRTLTGDSV----SVHYVIPPQPRAERGMPVIYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EARRAWHAGVSEWQGTTELNAVSIGIENVNRGPLDPQHRT--WQPYPPEQVDALTRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLAGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY+V T R V AF+ HF P +
Sbjct: 209 PHAP----VDVRELQLKLAR-YGYDVPTDGVLDTRTRRVFAAFQMHF----RPSDYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAESDAIAQALLDKY 274
>gi|425068421|ref|ZP_18471537.1| hypothetical protein HMPREF1311_01586 [Proteus mirabilis WGLW6]
gi|404599414|gb|EKA99868.1| hypothetical protein HMPREF1311_01586 [Proteus mirabilis WGLW6]
Length = 294
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 120/220 (54%), Gaps = 19/220 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
VK+L++HYT + + TS SSHY+I + Y+ G V+ +V ++ RAW
Sbjct: 47 VKFLVMHYTAVDDKESLKTLTSGNV----SSHYLIPTQP-NYVDGKPVVFALVSEDKRAW 101
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG+ +W LN SIGI +VN G ++ + P+ Q+ T+ ++ KDI+ ++
Sbjct: 102 HAGLSQWGNSAGLNDGSIGIEIVNYGY-KDQGTLREWLPYTAEQLSTITMMMKDIIQRYG 160
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+PQ V+GH+DIAP K+DPGPLFPW +L GIGAW PD+ TV + + P
Sbjct: 161 IEPQNVVGHSDIAPQRKVDPGPLFPWAEL-AKQGIGAW--PDDETVTFYLAGRAASEP-- 215
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+D F LL YGY T + V+ AF+ HF
Sbjct: 216 --VDIANFQTLLAKYGYQTPTTGILDPETQKVVSAFQMHF 253
>gi|157146476|ref|YP_001453795.1| hypothetical protein CKO_02236 [Citrobacter koseri ATCC BAA-895]
gi|157083681|gb|ABV13359.1| hypothetical protein CKO_02236 [Citrobacter koseri ATCC BAA-895]
Length = 276
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 129/250 (51%), Gaps = 24/250 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T SSHY+I + ++ Q+VP++ AWH
Sbjct: 44 IKILVIHYTADDFDTSLATLTDKNV----SSHYLIPAVPPLHRGKPRIWQLVPEHDLAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR +N S+GI L N G +K Y+ PF+ QI L L K+I++++
Sbjct: 100 AGISFWRGATRINDTSVGIELENRG--WQKSAGMKYFAPFEPAQIQALIPLAKEIIARYD 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKPQ V+ H DIAP K DPGPLFPW L GIGAW PDE V + P P
Sbjct: 158 IKPQNVVAHADIAPQRKDDPGPLFPWRDLAAQ-GIGAW--PDEQRVVFYLAGRAPNTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFS-ANQNPERIYADITTEDMFW 267
+D L+LL YGY V T ++ VI AF+ HF A N AD T+ +
Sbjct: 213 --VDPASLLDLLSRYGYEVKPEMTAREQQRVIMAFQMHFRPALWNG---VADAQTQAI-- 265
Query: 268 AWALVAKYGS 277
A AL+ KYG
Sbjct: 266 ANALLEKYGQ 275
>gi|254245540|ref|ZP_04938861.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Burkholderia
cenocepacia PC184]
gi|124870316|gb|EAY62032.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Burkholderia
cenocepacia PC184]
Length = 290
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 133/255 (52%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + + T + S HYVI + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDETKSLRTLTGDSV----SVHYVIPPQPRAERGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EVRRAWHAGVSEWQGTTELNAVSIGIENVNRGPLDPQHRT--WQPYPPEQVDALTRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLAGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY+V T R V AF+ HF P +
Sbjct: 209 PHAP----VDVRELQLKLAR-YGYDVPTDGVLDTRTRRVFAAFQMHF----RPSDYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAESDAIAQALLDKY 274
>gi|157369902|ref|YP_001477891.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia proteamaculans 568]
gi|157321666|gb|ABV40763.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia proteamaculans 568]
Length = 278
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 24/281 (8%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
+ MP I ++ H +++L++HYT +F + T
Sbjct: 14 AGCQSMPQNTIVDHGGYQLETLHQAQGADQRIRFLVMHYTAEDFHSSLKTLTDEHV---- 69
Query: 63 SSHYVISEKEGKYLPGGKVI--QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S+HY++ L GK + Q+VP+ +RAWHAG WR NLN SIGI +VN G
Sbjct: 70 SAHYLLPAHPP--LAQGKPVAFQLVPEALRAWHAGASSWRGRTNLNDTSIGIEIVNRGF- 126
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
+ T++ P+ QI L L +DI+ ++ I+P V+GH+DIAP K DPGPLFPW +
Sbjct: 127 NQTLLFTHWQPYTPQQIALLIPLSRDIIQRYGIQPTDVVGHSDIAPQRKQDPGPLFPWQQ 186
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNK 236
L GIGAW PDE V+ K R ++ + L +YGY + + +
Sbjct: 187 L-AQAGIGAW--PDEGQVQ----KLLAGRDKHAEVPLAPLMAKLASYGYGMDARWDVRQQ 239
Query: 237 RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
++V+ AF+ HF P + E AL+ KYG+
Sbjct: 240 KNVLAAFQMHF----RPSDYRGEPDAESEAIVDALLLKYGA 276
>gi|306844341|ref|ZP_07476933.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella inopinata BO1]
gi|306275413|gb|EFM57154.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella inopinata BO1]
Length = 268
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVISEKEGKYL 76
E + + N RDG +LILHYT A A ++ + S+HYV+ E
Sbjct: 26 ELDPSPNFGPRRDGKQPVFLILHYT--GLATAKEAMDVLKSPEMEVSAHYVVHED----- 78
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G+V+Q+V + RAWHAG W+ + ++NS SIGI +VN GV+ NY PF + Q
Sbjct: 79 --GRVVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGVL------ENYPPFHDAQ 130
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I + L +DI + +I+P+ VL H+DIAP K DPG FPW +L+ D GIG ++ P +
Sbjct: 131 IEAVIRLCQDICKRHEIRPENVLAHSDIAPARKTDPGQSFPWKRLH-DAGIGHYVEPTLI 189
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+ + + +P +L YGY + IT VI+AF+ HF Q
Sbjct: 190 CGGRFLARGEQGQPVE------ALQSMLALYGYEIAITGIFDEATEIVIKAFQRHFRP-Q 242
Query: 252 NPERIYADITTEDMFW 267
N + + AD++T D +
Sbjct: 243 NVDGV-ADVSTIDTLY 257
>gi|291616880|ref|YP_003519622.1| hypothetical protein PANA_1327 [Pantoea ananatis LMG 20103]
gi|291151910|gb|ADD76494.1| YbjR [Pantoea ananatis LMG 20103]
Length = 274
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 126/279 (45%), Gaps = 28/279 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S I PGY +D H VK +++HYT +F+ + T
Sbjct: 18 SGIESRPGYWVD--------LRHPAQGARPRVKVVVIHYTAEDFSSSLATLTDRDV---- 65
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S HY+I + + G + Q+VP+ AWHAG WR +N S+GI LVN G
Sbjct: 66 SVHYLIPRQPPQRKGQGIIWQLVPEQDLAWHAGPSFWRGATRINDTSVGIELVNNGYR-R 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF QI L L KDI ++ I P+ ++GH+DIAP K DPGP FPW +L
Sbjct: 125 TLTGLEWQPFPPEQIRVLSALIKDIARRYGIAPENIVGHSDIAPQRKQDPGPRFPWREL- 183
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT----ITNKRS 238
+ GIGAW P + + A P LDR L+ YGY VT +R+
Sbjct: 184 AEQGIGAWPDPQRVAFYLAGQHRDAAVPVATVLDR------LQRYGYEVTEGMSANQQRN 237
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
+I AF+ HF P E + AL+ KYG
Sbjct: 238 LIAAFQMHF----RPANYQGLADAETLAITEALLEKYGE 272
>gi|341584507|ref|YP_004764998.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia heilongjiangensis
054]
gi|350274016|ref|YP_004885329.1| AmpD-like protein [Rickettsia japonica YH]
gi|340808732|gb|AEK75320.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia heilongjiangensis
054]
gi|348593229|dbj|BAK97190.1| ampD protein homolog [Rickettsia japonica YH]
Length = 247
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE + F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DE-------QAFNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|270261151|ref|ZP_06189424.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia odorifera 4Rx13]
gi|270044635|gb|EFA17726.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia odorifera 4Rx13]
Length = 278
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + Q+VP+ +RAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPLREQGKPVAFQLVPEALRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +LN SIGI +VN G + T++ P+ QI L L +DI+ ++ I
Sbjct: 101 AGASYWRGRTSLNDTSIGIEIVNRGF-SRRMLFTHWQPYTPEQIALLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+GH+DIAP K DPGPLFPW +L + GIGAW E+ R A P
Sbjct: 160 QPTDVVGHSDIAPQRKQDPGPLFPWQQL-AEAGIGAWPDAAEVQRRLAGRDRHAAVPL-- 216
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
LE L YGY V +R+V+ AF+ HF P + E
Sbjct: 217 ----APLLEKLARYGYGVDALWDARQQRNVLAAFQMHF----RPSDFRGEPDAESEAIVD 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLQKYGA 276
>gi|429081868|ref|ZP_19144963.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter condimenti 1330]
gi|426549434|emb|CCJ71004.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter condimenti 1330]
Length = 306
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 119/225 (52%), Gaps = 30/225 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
+K L++HYT +F + T SSHY+I EK GK + + Q+VP+
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPEKGGKPV----IWQLVPERE 95
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKD 146
AWHAG+ WR LN S+GI L N G + G+K Y+PF+ QI L L +D
Sbjct: 96 LAWHAGVSFWRGATRLNDTSVGIELENYGYRKINGQK----RYFPFNPPQIDVLSKLARD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I+ +++I PQ V+ H DIAP K DPGPLFPW L GIGAW PDE V +
Sbjct: 152 IIHRYQIAPQNVVAHADIAPQRKDDPGPLFPWQALAAQ-GIGAW--PDEHRVAFYLAGRN 208
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVT----ITNKRSVIRAFKTHF 247
P P +R + L LL YGY VT ++ VI+AF+ HF
Sbjct: 209 PYAPV---AERDLLL-LLSRYGYEVTPQMSDAQRKRVIQAFQMHF 249
>gi|339998795|ref|YP_004729678.1| N-acetylmuramoyl-L-alanine amidase [Salmonella bongori NCTC 12419]
gi|339512156|emb|CCC29887.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella bongori
NCTC 12419]
Length = 276
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFGVSLATLTGPDV----SSHYLIPATPPLYGGKPRIWQLVPEQEQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG WR LN SIGI L N GGV ++ PF+ QI L L K+I
Sbjct: 100 AGASFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKEI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWHELAAQ-GIGAW--PDARRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P +D L LL YGY V T ++ VI AF+ HF Q AD T+
Sbjct: 210 YTP----VDTASVLALLSRYGYEVKTDMTAREQQRVIMAFQMHFRPAQWDG--IADAETQ 263
Query: 264 DMFWAWALVAKYGS 277
+ AL+ KYG
Sbjct: 264 AIV--EALLEKYGQ 275
>gi|313206060|ref|YP_004045237.1| n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485373|ref|YP_005394285.1| n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386321956|ref|YP_006018118.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-GD]
gi|416112077|ref|ZP_11593101.1| N-acetylmuramoyl-L-alanine amidase [Riemerella anatipestifer RA-YM]
gi|442314751|ref|YP_007356054.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-CH-2]
gi|312445376|gb|ADQ81731.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022373|gb|EFT35401.1| N-acetylmuramoyl-L-alanine amidase [Riemerella anatipestifer RA-YM]
gi|325336499|gb|ADZ12773.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-GD]
gi|380460058|gb|AFD55742.1| n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd
[Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441483674|gb|AGC40360.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-CH-2]
Length = 336
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 125/254 (49%), Gaps = 34/254 (13%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++LILHYT + + T S+HY++S+ LP + Q+V +N RA+HA
Sbjct: 101 RFLILHYTALDNETSVRVLTQRGV----SAHYLVSD-----LPDDDIWQLVDENKRAYHA 151
Query: 95 GIGKWRRDRNLNSMSIGIHLVN----GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
GI WR +N SIGI +VN G GEK +YPF E+Q + L KDIV +
Sbjct: 152 GISFWRNTTEMNDNSIGIEIVNKGYTTGTAGEKV----FYPFPEHQFKKVAALAKDIVER 207
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I P +L H+DIAP K DPGP FPW +LY +Y +G W D T +
Sbjct: 208 YNIPPTQILAHSDIAPTRKQDPGPFFPWKRLYDEYNLGMWY--DATTKQNFHETALSDLD 265
Query: 211 YPRKLDRGIFLE----LLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADIT 261
+ + F+ L+++GY++T T + VI AF+ HF PE+ +
Sbjct: 266 F--NYNNSTFISKVQNTLRSFGYDITPTGTWDKPSQKVIEAFQYHF----RPEKCDGVLD 319
Query: 262 TEDMFWAWALVAKY 275
E AL+ KY
Sbjct: 320 AETWAILQALIVKY 333
>gi|414165412|ref|ZP_11421659.1| hypothetical protein HMPREF9697_03560 [Afipia felis ATCC 53690]
gi|410883192|gb|EKS31032.1| hypothetical protein HMPREF9697_03560 [Afipia felis ATCC 53690]
Length = 252
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 28/227 (12%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R G V L+LHYT A + A + SSHY++ E GG+++Q+
Sbjct: 19 NFDERGGSVVDILVLHYTGMPEEEAALARLCDPAAKV-SSHYLVRE-------GGEIVQL 70
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V ++ RAWHAG +WR +LN+ SIGI + N G G F + QI + L
Sbjct: 71 VAEDKRAWHAGQSRWREWSDLNARSIGIEIANPGHDG------GCPAFPDVQIDAVIALC 124
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+DI +++ I VL H+DIAP K DPG FPW +L + G+G W++P ++ + +
Sbjct: 125 RDITARWPIPRDRVLAHSDIAPLRKQDPGEWFPWDRLAAE-GVGLWVTPAPLSAD----R 179
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITN----KRSVIRAFKTHF 247
F+P P +LD +FL+ L AYGY VT ++ K++V+ AF+ HF
Sbjct: 180 FEPT---PHELD--VFLKALVAYGYGVTHSDSWDTKQAVVAAFQRHF 221
>gi|421491942|ref|ZP_15939304.1| B0867 [Morganella morganii subsp. morganii KT]
gi|455739681|ref|YP_007505947.1| N-acetylmuramoyl-L-alanine amidase [Morganella morganii subsp.
morganii KT]
gi|400193702|gb|EJO26836.1| B0867 [Morganella morganii subsp. morganii KT]
gi|455421244|gb|AGG31574.1| N-acetylmuramoyl-L-alanine amidase [Morganella morganii subsp.
morganii KT]
Length = 275
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 21/245 (8%)
Query: 36 YLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
YL+ HYT N + T+ + + + ++GK + V+Q+VP+ AWHAG
Sbjct: 46 YLVFHYTALNDEASLRVLTAGGVSVQYLVPTIPAVRDGKPV----VLQLVPEGNEAWHAG 101
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
WR + +LN SIG+ +VN G V + P+ QI + L +D++++ I P
Sbjct: 102 KSHWRGESSLNKSSIGVEIVNPGTVKMSV-GQRWVPYQTAQIDLIVKLAQDVIARHNIAP 160
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
Q V+GH+DIAP K+DPGP+FPW L G+GAW PD + V++F R K+
Sbjct: 161 QNVVGHSDIAPQRKLDPGPMFPWEYL-AKRGVGAW--PD----ASDVKRFLGNRHPSDKI 213
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWAWA 270
G + LK YGY + +T K R+VI+AF+ HF ++ ++ + E + A
Sbjct: 214 SVGELQQALKKYGYEIPLTGKADGKTRNVIKAFQMHFRSH----KVNGEADAETLALVKA 269
Query: 271 LVAKY 275
L+ KY
Sbjct: 270 LLKKY 274
>gi|421499221|ref|ZP_15946276.1| putative N-acetylmuramoyl-L-alanine amidase [Aeromonas media WS]
gi|407181747|gb|EKE55749.1| putative N-acetylmuramoyl-L-alanine amidase [Aeromonas media WS]
Length = 272
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 24/249 (9%)
Query: 12 VIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK 71
P P +E + H + + +LILHYT + A + T AH + + + V +
Sbjct: 12 ACQPAP-YELSTRHTSANQNERIAFLILHYTDEDDARSLRLLTEP-AHKVSAHYLVPRDT 69
Query: 72 EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS----- 126
+ + LP V Q+VPD+ RAWHAG +W + LN+ S+GI +VN G EK +
Sbjct: 70 DERPLP---VYQLVPDSQRAWHAGRSRWHQYAGLNASSLGIEIVNLGY-DEKEAALPAHL 125
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
++ P+ QI LG L +++V +++I VL H+DIAP K DPGP FPW +L L +G
Sbjct: 126 RHWQPYTRAQIAALGALSQELVQRYRIPATQVLAHSDIAPERKQDPGPHFPWRELALHHG 185
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIR 241
+GAW PDE V + ++ P + + + L YGY + + R+ +R
Sbjct: 186 VGAW--PDEARVAELRQQPPPV------WNALAWQQQLARYGYGILPSGAWDEQSRAAMR 237
Query: 242 AFKTHFSAN 250
AF+ HF A
Sbjct: 238 AFQLHFRAT 246
>gi|386825128|ref|ZP_10112255.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica PRI-2C]
gi|386377985|gb|EIJ18795.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica PRI-2C]
Length = 278
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + Q+VP+ +RAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPLREWGKPVAFQLVPEALRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +LN SIGI +VN G ST++ P+ QI L L +DI+ ++ I
Sbjct: 101 AGASYWRGRTSLNDTSIGIEIVNRGF-SRSMLSTHWQPYTPEQIALLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+GH+DIAP K DPGPLFPW +L + GIGAW E+ R A P
Sbjct: 160 QPTDVVGHSDIAPQRKQDPGPLFPWQQL-AEAGIGAWPDAAEVQRRLAGRGRHAAVPL-- 216
Query: 214 KLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
LE L YGY V +R+++ AF+ HF P + E
Sbjct: 217 ----APLLEKLARYGYGVDARWDARQQRNLLAAFQMHF----RPSDFRGEPDAESEAIVD 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLQKYGA 276
>gi|416997293|ref|ZP_11939228.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. TJI49]
gi|325517968|gb|EGC97791.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. TJI49]
Length = 289
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 133/254 (52%), Gaps = 26/254 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDEAKSLRTLTGDAV----SVHYVVPPQPRIERGQPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EAQRAWHAGVSEWQGTTELNAVSIGIENVNRGPLDPQNRT--WQPYPPEQVDALIRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAA---RLG 205
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADIT 261
P+ R + L+L + YGY+V T R V AF+ HF P +
Sbjct: 206 GRDPHASVDVRELQLKLAR-YGYDVPTDGVLDTRTRRVFAAFQMHF----RPSDYAGNPD 260
Query: 262 TEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 261 AETDAIAQALLDKY 274
>gi|85058078|ref|YP_453780.1| N-acetylmuramoyl-L-alanine amidase [Sodalis glossinidius str.
'morsitans']
gi|84778598|dbj|BAE73375.1| putative N-acetylmuramoyl-L-alanine amidase [Sodalis glossinidius
str. 'morsitans']
Length = 258
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 132/255 (51%), Gaps = 27/255 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG----KVIQIVPDN 88
V++L++HYT NF IT T N S+HY++ + K Y G +V +V +N
Sbjct: 19 VRFLVMHYTAVNFKGSITVLTGNSV----SAHYLVPDPSDKTYTDAGFKDMRVFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG W NLN +IGI VN + + + PF QI + L K+IV
Sbjct: 75 DRAWHAGASDWAGRSNLNDTAIGIETVN--LATDNHGEFVFPPFHLQQIDAIIELSKNIV 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P ++GH+DIAPG K DPG FPW +LY GIGAW PD TVE KF
Sbjct: 133 QRYPDITPVNIVGHSDIAPGRKSDPGAAFPWKELY-QAGIGAW--PDADTVEKYTVKF-I 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
++ P +R + LL YGY+V N + +IRAF+ HF +N + + + TE
Sbjct: 189 SQGVP---ERSAIINLLNKYGYSVKAANTADGFKQLIRAFQLHFR-QENYDGV---LDTE 241
Query: 264 DMFWAWALVAKYGSM 278
AL KY ++
Sbjct: 242 TAAILAALCEKYKNI 256
>gi|392389710|ref|YP_006426313.1| negative regulator of beta-lactamase expression [Ornithobacterium
rhinotracheale DSM 15997]
gi|390520788|gb|AFL96519.1| negative regulator of beta-lactamase expression [Ornithobacterium
rhinotracheale DSM 15997]
Length = 303
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 127/252 (50%), Gaps = 34/252 (13%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
K+LILHYT + + + S HYV+++ + ++ +V +N RAWHA
Sbjct: 76 KFLILHYTALDTPKSLMVLSERNV----SVHYVVNDYDD-----NQINALVSENKRAWHA 126
Query: 95 GIGKWRRDRNLNSMSIGIHLVN-GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
G+ W NLN SIGI +VN G GE Y F + QI +G L KDIVS++ I
Sbjct: 127 GVSYWGGRTNLNDSSIGIEIVNMGNTYGE------YQDFPDYQIKKVGALAKDIVSRYNI 180
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P +VLGH DIAP K DPGP FPW +LY +YG+GAW DE T + +F P +
Sbjct: 181 DPTHVLGHEDIAPQRKPDPGPKFPWKRLYDEYGVGAWY--DEPTKIFYMNQF----PEAQ 234
Query: 214 KLDRGI---FLELLKAYGYNVT-----ITNKRSVIRAFKTHFSANQNPERIYADITTEDM 265
K D F + L YGY ++ + V++AF+ HF P ++ E
Sbjct: 235 KDDMNFIADFQKDLATYGYEISPLGYWDEKSKKVVKAFQKHFR----PTNYDGNLDAETW 290
Query: 266 FWAWALVAKYGS 277
AL+ KY S
Sbjct: 291 AILKALLKKYKS 302
>gi|293396865|ref|ZP_06641139.1| N-acetylmuramoyl-L-alanine amidase [Serratia odorifera DSM 4582]
gi|291420336|gb|EFE93591.1| N-acetylmuramoyl-L-alanine amidase [Serratia odorifera DSM 4582]
Length = 278
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 24/222 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK----EGKYLPGGKVIQIVPDNM 89
+++L++HYT +F + T S+HY++ + GK L Q+VP+ M
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPARPPVQNGKPL----AYQLVPEQM 96
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG +WR LN SIGI +VN G + S ++ P+ QI L L +DI++
Sbjct: 97 RAWHAGASQWRGRSGLNDTSIGIEIVNRGY-QRRLLSQSWQPYTPQQIALLTELARDIIA 155
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I+P V+GH+DIAP K DPGPLFPW +L G+GAW PD V+ + KP
Sbjct: 156 RYGIQPVDVVGHSDIAPQRKQDPGPLFPWRQL-AQAGVGAW--PDPGVVQHYLAGRKPQA 212
Query: 210 PYPRKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHF 247
P P L L YGY V + +++ AF+ HF
Sbjct: 213 PVPML----PLLAKLARYGYTVDAKWDARQQHNLLAAFQMHF 250
>gi|148652361|ref|YP_001279454.1| N-acetylmuramoyl-L-alanine amidase [Psychrobacter sp. PRwf-1]
gi|148571445|gb|ABQ93504.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Psychrobacter sp.
PRwf-1]
Length = 308
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 47/292 (16%)
Query: 3 SSIHGMPG--YVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
S G+P Y ID ++++ +KY++LHYT N + T+
Sbjct: 41 SGCMGLPATTYAID-------SQSYQAQGKSQRIKYIVLHYTAENEPESLRILTTANV-- 91
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S+HY+I + K + Q+VPDN RAWHAG G + LN SIGI +VN G+
Sbjct: 92 --SAHYLIPITDDK-----PIYQLVPDNQRAWHAGQGSFAGRSILNDTSIGIEIVNEGI- 143
Query: 121 GEKFR------------STNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGS 168
++FR + +Y F + QI + L +D+ +++I+P ++GH+D+AP
Sbjct: 144 QQQFRKAKNTDNDGYHPAEHYVEFTDIQIKKIAQLVQDLAQKYEIEPTLIIGHSDMAPSR 203
Query: 169 KMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYG 228
K+DPG FPW +LY +YGIGAW EA ++F + I ++L YG
Sbjct: 204 KIDPGAKFPWERLYKEYGIGAWYE------EADKQQFMTEGSFQSATVADI-QQMLSDYG 256
Query: 229 YNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
Y++T +++ R+V+ AF+ HF P+++ + E AL KY
Sbjct: 257 YDITPSDEWDRSSRNVVYAFQLHF----RPQKLTGQMDLETYAILKALNKKY 304
>gi|34496764|ref|NP_900979.1| N-acetylmuramoyl-L-alanine amidase [Chromobacterium violaceum ATCC
12472]
gi|34102619|gb|AAQ58984.1| probable N-acetylmuramoyl-L-alanine amidase [Chromobacterium
violaceum ATCC 12472]
Length = 299
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 31/251 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G +I+ + + ++ + DSR ++ L+ HYT +FA + T + S+HY++
Sbjct: 30 GEMIEYWIDESRSSANQDSR----IRTLVFHYTAEDFATSLKLLTEPQYRT--SAHYLVP 83
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS--- 126
+ ++++V + RAWHAG WR R LN SIG+ +VN G
Sbjct: 84 DA-ATLSRRPAILRLVEEERRAWHAGDSYWRGQRYLNGASIGVEIVNRGYPSPLQDDWPP 142
Query: 127 --TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
++ FD+ QI +G L IV++ +I+P V+GH DIAPG KMDPGP FPW +L+ +
Sbjct: 143 MRRDWQAFDDAQIAQVGKLAAGIVARHRIQPCDVVGHADIAPGRKMDPGPKFPWERLHRE 202
Query: 185 YGIGAWLSPDEMTVEAIVRKF---KPARPYPRKLDRGIFLELLKAYGYNVTITNK----- 236
+G+GAW PD+ VR+F +P P D + L AYGY+ + +
Sbjct: 203 FGVGAWPDPDD------VRRFLALQPGTP-----DAASWQRRLAAYGYDAPRSGEWDEKT 251
Query: 237 RSVIRAFKTHF 247
R I+AF+ HF
Sbjct: 252 RHAIQAFQMHF 262
>gi|161619391|ref|YP_001593278.1| protein ampD [Brucella canis ATCC 23365]
gi|161336202|gb|ABX62507.1| Protein ampD [Brucella canis ATCC 23365]
Length = 268
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 28/255 (10%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP 77
E + + N RDG +LILHYT A + + S+HYV+ E
Sbjct: 26 ELDPSPNFGPRRDGKQPVFLILHYTGLVTAKEAMDVLKSPEMEV-SAHYVVHED------ 78
Query: 78 GGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
G+V+Q+V + RAWHAG W+ + ++NS SIGI +VN GV+ NY PF + QI
Sbjct: 79 -GRVVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGVL------ENYPPFHDAQI 131
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ L +DI + +I+P+ VL H+DIAP K DPG FPW +L+ D GIG ++ P +
Sbjct: 132 EAVIRLCQDICKRHEIRPENVLAHSDIAPARKTDPGQSFPWKRLH-DAGIGHYVEPTPIC 190
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQN 252
+ + + +P +L YGY + IT VI+AF+ HF QN
Sbjct: 191 GGRFLARGEQGQPVE------ALQSMLALYGYEIAITGIFDEATEIVIKAFQRHFRP-QN 243
Query: 253 PERIYADITTEDMFW 267
+ + AD++T D +
Sbjct: 244 VDGV-ADVSTIDTLY 257
>gi|410086673|ref|ZP_11283381.1| N-acetylmuramoyl-L-alanine amidase [Morganella morganii SC01]
gi|409766893|gb|EKN50981.1| N-acetylmuramoyl-L-alanine amidase [Morganella morganii SC01]
Length = 275
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 21/245 (8%)
Query: 36 YLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
YL+ HYT N + T+ + + + ++GK + V+Q+VP+ AWHAG
Sbjct: 46 YLVFHYTALNDEASLRVLTAGGVSVQYLVPTIPAVRDGKPV----VLQLVPEGNEAWHAG 101
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
WR + +LN SIG+ +VN G V + P+ QI + L +D++++ I P
Sbjct: 102 KSYWRGESSLNKSSIGVEIVNPGTVKMSV-GQRWVPYQTAQIDLIVKLAQDVIARHNIAP 160
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
Q V+GH+DIAP K+DPGP+FPW L G+GAW PD + V++F R K+
Sbjct: 161 QNVVGHSDIAPQRKLDPGPMFPWEYL-AKRGVGAW--PD----ASDVKRFLGNRHPSDKI 213
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWAWA 270
G + LK YGY + +T K R+VI+AF+ HF ++ ++ + E + A
Sbjct: 214 SVGELQQALKKYGYEIPLTGKADGKTRNVIKAFQMHFRSH----KVNGEADAETLALVKA 269
Query: 271 LVAKY 275
L+ KY
Sbjct: 270 LLKKY 274
>gi|426407733|ref|YP_007027832.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas sp. UW4]
gi|426265950|gb|AFY18027.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas sp. UW4]
Length = 256
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 141/269 (52%), Gaps = 31/269 (11%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S + +++L+LHYT NF+ ++A T S+HY++ + + YL
Sbjct: 5 NYNKYRSARSFNSRIRFLVLHYTAANFSSSVSALTGPNV----SAHYLVPDITDPSYLKA 60
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G +V +V + RAWHAG+ +W NLN SIGI +VN + + + P+
Sbjct: 61 GYTGQEVFNLVDETHRAWHAGVSQWGNRSNLNDTSIGIEVVN--LATDNKGQFTFPPYHP 118
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + LL +I+ ++ I P VLGH+DI+ G K DPGP+FPW LYL G+GAW
Sbjct: 119 EQIAAIELLALNILKRYPDITPTQVLGHSDISIGRKSDPGPMFPWQALYLK-GVGAWF-- 175
Query: 194 DEMTVEAIVRKFKPAR-PYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
DE T + + ++ + P R L L K+YGY+V+ + + ++RAF+ HF
Sbjct: 176 DEATRDQYLSQYTTSGVPV-----RSELLGLFKSYGYDVSGASTEGGFQQLVRAFQMHF- 229
Query: 249 ANQNPERIYADITTEDMFWAWALVAKYGS 277
PE+ + + ALV+KY S
Sbjct: 230 ---RPEKFDGKMDAQTAANLKALVSKYFS 255
>gi|330811661|ref|YP_004356123.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327379769|gb|AEA71119.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 254
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 135/266 (50%), Gaps = 29/266 (10%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S+ G + +++L+ HYT NF+ + A T S+HY+I + + YL
Sbjct: 4 NYNSYRSKKGYNSRIRFLVFHYTAANFSSSVNALTGASV----SAHYLIPDITDPSYLNA 59
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G ++ +V +N RAWHAG+ W NLN SIGI +VN + ++ P+
Sbjct: 60 GFNDQQIFNLVDENQRAWHAGVSSWGGRTNLNDTSIGIEIVNRATDNQG--QFSFPPYQS 117
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + +L DI+ ++ I P V+GH+DIA G K DPGP+FPW LY GIGAW
Sbjct: 118 RQIEAIEVLALDILKRYPDISPVNVVGHSDIAAGRKSDPGPMFPWQALYAK-GIGAWF-- 174
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHFSA 249
DE T +A ++ R+ G+F K YGY+ T T + ++RAF+ HF
Sbjct: 175 DEPTQKAYREVYQGNGLPTREQQLGLF----KKYGYDTSAATTDTGFQRLVRAFQLHF-- 228
Query: 250 NQNPERIYADITTEDMFWAWALVAKY 275
P R + E ALV KY
Sbjct: 229 --RPARYDGVMDIETAANLAALVKKY 252
>gi|383480911|ref|YP_005389826.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933250|gb|AFC71753.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 247
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 125/248 (50%), Gaps = 29/248 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEEHDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGQERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTGILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKY 275
AL+ KY
Sbjct: 235 LDALILKY 242
>gi|422016839|ref|ZP_16363416.1| N-acetylmuramoyl-L-alanine amidase AmiD [Providencia
burhodogranariea DSM 19968]
gi|414091482|gb|EKT53166.1| N-acetylmuramoyl-L-alanine amidase AmiD [Providencia
burhodogranariea DSM 19968]
Length = 292
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S++ GY +D ++H ++Y++LHYTV + + I T
Sbjct: 17 STLSSQQGYYLD--------KSHPSQNVSERIQYVVLHYTVSDDEYSIYLLTKQNV---- 64
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHY+I + + V+Q+VP+ ++AWHAG WR LN SIGI +VN G +
Sbjct: 65 SSHYLILSQPAQKNNQPVVLQLVPEELKAWHAGDSHWRYHSGLNDTSIGIEIVNPGFTVD 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
K + + PF++ QI L L KDI+ ++ I + ++GH+DIAP K DPG +FPW L
Sbjct: 125 KQGNKTWAPFNDTQITALIPLLKDIMQRYDIPAENIIGHSDIAPLRKEDPGRVFPWEALS 184
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGY-NVTITNK----- 236
GIGAW PD TV + R + + + LK YGY + T K
Sbjct: 185 -KQGIGAW--PDAKTVT----NYLSGRAVDEPSNVLLLQKTLKFYGYAEIPQTGKLDAKT 237
Query: 237 RSVIRAFKTHFSANQNPERI--YADITTEDMFWAWALVAKYGSM 278
+ I AF+ HF P I +AD TE + A AL+ KY M
Sbjct: 238 QKTISAFQMHF----RPRNIDGFADAETEAI--ALALIDKYRDM 275
>gi|238027542|ref|YP_002911773.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia glumae BGR1]
gi|237876736|gb|ACR29069.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia glumae BGR1]
Length = 307
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 31/231 (13%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI----SEKEGKYLPGGKVI 82
DSR V++L+LHYT + T H+ S+HY++ S ++GK + V+
Sbjct: 53 DSR----VRFLVLHYTESDDQRARFVLT----HDEVSAHYLVPSHPSYRDGKPV----VL 100
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV-GEKFRSTNYYPFDENQIHTLG 141
Q+VP++ RAWHAG+ W+ LN+ SIGI +VN G + R+ YP D Q+ +
Sbjct: 101 QLVPESERAWHAGVSDWQGTTELNAASIGIEIVNAGPLDAPANRTWQAYPPD--QVEAVV 158
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L +DIV++++I P V+ H+DIAP K+DPGP FPW L G+GAW PD+ TV A
Sbjct: 159 KLAQDIVARYRIPPTRVVAHSDIAPQRKIDPGPAFPWQALAR-AGVGAW--PDDATVAAR 215
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
+ P P RG+ L+L + YGY+V R V AF+ HF
Sbjct: 216 LAGRAPGDP---AEVRGLQLKLAR-YGYDVATDGVLDARTRRVFAAFQMHF 262
>gi|383484650|ref|YP_005393563.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia parkeri str.
Portsmouth]
gi|378937004|gb|AFC75504.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia parkeri str.
Portsmouth]
Length = 247
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ ++N SIGI +VN V + + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHEHINDTSIGIEIVNPAFEVNAENNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|325955371|ref|YP_004239031.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Weeksella virosa DSM 16922]
gi|323437989|gb|ADX68453.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Weeksella virosa DSM 16922]
Length = 306
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 27/223 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++++LHYT + + ++ + SSHYV+ + ++ +V ++ RAWH
Sbjct: 76 IRHVVLHYTSMDQEPSLRVLSTRQV----SSHYVVGDSFD-----DEIFALVDESKRAWH 126
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ KW+ N+N SIGI +VN K+ ++ P+ E Q + L KDIV ++ I
Sbjct: 127 AGVSKWKGLDNINFSSIGIEIVNKSN-DNKYGGIDFVPYPEYQFRKVAALTKDIVDRYNI 185
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+GH+D+APG K DPGP FPW +LYL+YG+GAW D+ + + YP
Sbjct: 186 EPTNVIGHSDVAPGRKHDPGPQFPWKRLYLEYGVGAWY--DDADKNGYLYQ------YPY 237
Query: 214 KLDRGIFLEL----LKAYGYNVTIT-----NKRSVIRAFKTHF 247
F++ L YGYN+ IT + VI+AF+ HF
Sbjct: 238 DTSSFTFIQQFQNDLAKYGYNIAITGVWDDQTKKVIQAFQYHF 280
>gi|344175520|emb|CCA88204.1| putative N-acetylmuramyl-L-alanine amidase (amiD), negative
regulator of AmpC, AmpD [Ralstonia syzygii R24]
Length = 343
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 131/233 (56%), Gaps = 30/233 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE---GKYLPGGKVIQ 83
DSR V+ L+LHYT + A I T + SSHY++ + G++ +V
Sbjct: 64 DSR----VRTLVLHYTGGSLAESIAWLTDSLRQV--SSHYLVPDAADGGGQF----RVYA 113
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+VP++ RAWHAG+ W+ +R LN+ +IGI +VN G + + +YP+ + QI
Sbjct: 114 LVPESRRAWHAGLSYWQGERMLNAGTIGIEVVNSGFPAQDGSAPLMNRRWYPYPDPQIAV 173
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L DIV++ I PQ V+GH D+AP K+DPGPLFPW KLY Y +GAW P+ E
Sbjct: 174 VGRLAADIVARHGILPQKVVGHADVAPSRKVDPGPLFPWQKLYEQYRVGAW--PE---AE 228
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
AI ++ +P+ R G+ +LL AYGY+ T +V+ AF+ HF
Sbjct: 229 AI-GYYRSQQPF-RGDIAGLQAKLL-AYGYDAPQTGVLDAQTINVVVAFQMHF 278
>gi|78066160|ref|YP_368929.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia sp. 383]
gi|77966905|gb|ABB08285.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia sp. 383]
Length = 290
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 134/255 (52%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V++L++HYT + A + T + S HYVI + V Q+VP
Sbjct: 42 DSR----VRFLVMHYTESDEAKSLRTLTGDSV----SVHYVIPPQARIERGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 ESERAWHAGVSEWQGTTELNAVSIGIENVNRGPLDPQNRT--WQPYPPEQVAALTRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVTARLGGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY++ R V AF+ HF P +
Sbjct: 209 PHAP----VDVRELQLKLAR-YGYDLATDGVLDARTRRVFAAFQMHF----RPSGYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAETDAIAQALLDKY 274
>gi|238651123|ref|YP_002916981.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia peacockii str.
Rustic]
gi|238625221|gb|ACR47927.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia peacockii str.
Rustic]
Length = 247
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIILFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|344169681|emb|CCA82042.1| putative N-acetylmuramyl-L-alanine amidase (amiD), negative
regulator of AmpC, AmpD [blood disease bacterium R229]
Length = 343
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 131/233 (56%), Gaps = 30/233 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE---GKYLPGGKVIQ 83
DSR V+ L+LHYT + A I T + SSHY++ + G++ +V
Sbjct: 64 DSR----VRTLVLHYTGGSLAESIAWLTDSLRQV--SSHYLVPDAADGGGQF----RVYA 113
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+VP++ RAWHAG+ W+ +R LN+ +IGI +VN G + + +YP+ + QI
Sbjct: 114 LVPESRRAWHAGLSYWQGERMLNAGTIGIEVVNSGFPAQDGSAPLMNRRWYPYPDPQIAV 173
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L DIV++ I PQ V+GH D+AP K+DPGPLFPW KLY Y +GAW P+ E
Sbjct: 174 VGRLAADIVARHGILPQKVVGHADVAPSRKVDPGPLFPWQKLYEQYRVGAW--PE---AE 228
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
AI ++ +P+ R G+ +LL AYGY+ T +V+ AF+ HF
Sbjct: 229 AI-GYYRSQQPF-RGDIAGLQAKLL-AYGYDAPQTGVLDAQTINVVVAFQMHF 278
>gi|157829196|ref|YP_001495438.1| hypothetical protein A1G_07455 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933921|ref|YP_001650710.1| anhydro-N-acetylmuramyl-tripeptide amidase-like protein [Rickettsia
rickettsii str. Iowa]
gi|378722006|ref|YP_005286893.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Colombia]
gi|378723350|ref|YP_005288236.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Arizona]
gi|378724705|ref|YP_005289589.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hauke]
gi|379017079|ref|YP_005293314.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Brazil]
gi|379018490|ref|YP_005294725.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hino]
gi|157801677|gb|ABV76930.1| hypothetical protein A1G_07455 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165909008|gb|ABY73304.1| anhydro-N-acetylmuramyl-tripeptide amidase-like protein [Rickettsia
rickettsii str. Iowa]
gi|376325603|gb|AFB22843.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Brazil]
gi|376327030|gb|AFB24269.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Colombia]
gi|376328374|gb|AFB25612.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Arizona]
gi|376331056|gb|AFB28292.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hino]
gi|376333720|gb|AFB30953.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hauke]
Length = 247
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEESDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+P V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IRPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNNLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTKILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|300694036|ref|YP_003750009.1| n-acetylmuramyl-l-alanine amidase (amid) , negative regulator of
ampc, ampd [Ralstonia solanacearum PSI07]
gi|299076073|emb|CBJ35383.1| putative N-acetylmuramyl-L-alanine amidase (amiD) , negative
regulator of AmpC, AmpD [Ralstonia solanacearum PSI07]
Length = 343
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 131/233 (56%), Gaps = 30/233 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE---GKYLPGGKVIQ 83
DSR V+ L+LHYT + A I T + SSHY++ + G++ +V
Sbjct: 64 DSR----VRTLVLHYTGGSLAESIAWLTDSLRQV--SSHYLVPDAADGGGQF----RVYA 113
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDENQIHT 139
+VP++ RAWHAG+ W+ +R LN+ +IGI +VN G + + +YP+ + QI
Sbjct: 114 LVPESRRAWHAGLSYWQGERMLNAGTIGIEVVNSGFPAQDGSAPLMNRRWYPYPDPQIAV 173
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+G L DIV++ I PQ V+GH D+AP K+DPGPLFPW KLY Y +GAW P+ E
Sbjct: 174 VGRLAADIVARHGILPQKVVGHADVAPSRKVDPGPLFPWQKLYEQYRVGAW--PE---AE 228
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
AI ++ +P+ R G+ +LL AYGY+ T +V+ AF+ HF
Sbjct: 229 AI-GYYRSQQPF-RGDIAGLQAKLL-AYGYDAPQTGVLDAQTINVVVAFQMHF 278
>gi|167562888|ref|ZP_02355804.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
oklahomensis EO147]
Length = 298
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 132/255 (51%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ ++ V Q+VP
Sbjct: 42 DSR----IRFLVMHYTEIGEAQSLRVLTQENV----SAHYVVPDQPSLERGVPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + + P+ Q+ + L KD
Sbjct: 94 ESERAWHAGVSSWQGATELNGVSIGIENVNRGPI-DTPQGRMWAPYPPAQVDAIVRLAKD 152
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IVS+++I P V+GH+DIAP K DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 153 IVSRYQIPPTRVVGHSDIAPQRKTDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 206
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R VI AF+ HF P +
Sbjct: 207 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVIAAFQMHF----RPTDYAGNP 260
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 261 DAETDAIAQALLDKY 275
>gi|390433326|ref|ZP_10221864.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea agglomerans IG1]
Length = 274
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 113/218 (51%), Gaps = 16/218 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S+HY+I + + G + Q+VP+ AWH
Sbjct: 41 VKVIVIHYTAEDFSSSLATLTDREV----SAHYLIPRQPPQRAGKGVIWQLVPEQQLAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +N SIGI LVN G + PF QI TL L +DI ++ I
Sbjct: 97 AGSSFWRGASRINDTSIGIELVNQGYR-RTLTGLEWQPFTAAQITTLEALLRDIAQRYGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K DPGPLFPW +L L G+GAW PD V+ + P P
Sbjct: 156 TPENIVGHSDIAPQRKQDPGPLFPWHQLAL-RGMGAW--PDAGRVQFHLAGHDPHAVVPV 212
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHF 247
+ LE L+ YGY VT ++ VI AF+ HF
Sbjct: 213 E----PLLESLQRYGYPVTAEMSAREQQRVIAAFQMHF 246
>gi|92113767|ref|YP_573695.1| negative regulator of AmpC, AmpD [Chromohalobacter salexigens DSM
3043]
gi|91796857|gb|ABE58996.1| negative regulator of AmpC, AmpD [Chromohalobacter salexigens DSM
3043]
Length = 303
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 127/247 (51%), Gaps = 28/247 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L+LHYT + ++ T S+HYV++ + K+ Q+V ++ RAWH
Sbjct: 64 VRHLVLHYTDSDARRSLSTLTGPHV----SAHYVLTRE------APKIYQLVDESRRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W NLN SIGI +VN G + + P+ QI TL L +DIV++ I
Sbjct: 114 AGASAWHSRTNLNDTSIGIEVVNRGPY-QTPAGRAWTPYPSAQIDTLIALARDIVARHAI 172
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH DIAP K+DPGP FPW +LY GIGAW P+ V A R+F + P
Sbjct: 173 DPVDVVGHADIAPRRKIDPGPRFPWYRLY-RAGIGAW--PETARVMAYQRRFMASPPSLT 229
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+ R L AYGY V +T + +RAF+ HF ++ + D + +
Sbjct: 230 QWQRA-----LAAYGYPVAVTGRFDALTHDTLRAFQMHFRPTRHDG--FPDAHSAAIL-- 280
Query: 269 WALVAKY 275
WAL+ KY
Sbjct: 281 WALLEKY 287
>gi|421865297|ref|ZP_16296977.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia H111]
gi|358074760|emb|CCE47855.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia cenocepacia H111]
Length = 290
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++H+T + + T + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHHTESDETKSLRTLTGDSV----SVHYVVPPQPRTERGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAGI +W+ LN++SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 EAQRAWHAGISEWQGTTELNAVSIGIENVNRGPLDPQHRT--WQPYSPEQVDALTRLAKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLGGRD 208
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
P P +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 209 PHAP----VDVRDLQLKLAR-YGYDVPTDGVLDARTRRVFAAFQMHF----RPSDYAGNP 259
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 260 DAESDAIAQALLDKY 274
>gi|34581053|ref|ZP_00142533.1| ampD protein homolog [Rickettsia sibirica 246]
gi|229587251|ref|YP_002845752.1| Negative regulator of beta-lactamase expression [Rickettsia africae
ESF-5]
gi|28262438|gb|EAA25942.1| ampD protein homolog [Rickettsia sibirica 246]
gi|228022301|gb|ACP54009.1| Negative regulator of beta-lactamase expression [Rickettsia africae
ESF-5]
Length = 247
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V + + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAENNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|379713075|ref|YP_005301414.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia philipii str. 364D]
gi|376329720|gb|AFB26957.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia philipii str. 364D]
Length = 247
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+P V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IRPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNNLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|422024063|ref|ZP_16370564.1| N-acetylmuramoyl-L-alanine amidase [Providencia sneebia DSM 19967]
gi|414091463|gb|EKT53148.1| N-acetylmuramoyl-L-alanine amidase [Providencia sneebia DSM 19967]
Length = 290
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 145/282 (51%), Gaps = 29/282 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S++ PGY +D + KN + ++Y+ILHYTV + + + T +
Sbjct: 17 STLSSRPGYYVDS-SQPSKNTSE-------RIQYVILHYTVADDDYSLHLLTQGQV---- 64
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHY+++ + + V+Q+VP+ ++AWHAG W RNLN+ SIGI +VN G +
Sbjct: 65 SSHYLVTSEPEQKSDQPIVLQLVPEELKAWHAGHSHWLYHRNLNNSSIGIEIVNPGYQLD 124
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ + + F+E+QI L L KDI+ ++ I + ++GH+DIAP K DPG FPW +L
Sbjct: 125 EQGNKTWPEFNESQIVALIPLIKDIMQRYNIPAENIIGHSDIAPLRKEDPGKAFPWERLS 184
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYN-VTITNK----- 236
+GIGAW PD T V K+ R D + LK YGY + ++ +
Sbjct: 185 -QHGIGAW--PDAAT----VTKYLSGRTIDESSDLLKLQKALKFYGYTEIPLSGELDEET 237
Query: 237 RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM 278
+ I AF+ HF P I E A+AL+ KY +M
Sbjct: 238 QKTISAFQMHF----RPRNIDGLPDAETEAIAFALIEKYRNM 275
>gi|383311960|ref|YP_005364761.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Rickettsia
amblyommii str. GAT-30V]
gi|378930620|gb|AFC69129.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Rickettsia
amblyommii str. GAT-30V]
Length = 247
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY + IGAW DE F P
Sbjct: 129 IKPTRVIGHSDIAPGRKQDPGPLFPWKPLY-NNNIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTGILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|379019799|ref|YP_005296033.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hlp#2]
gi|376332379|gb|AFB29613.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia rickettsii str.
Hlp#2]
Length = 247
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I+P V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IRPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNNLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTKILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|115351502|ref|YP_773341.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria AMMD]
gi|115281490|gb|ABI87007.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria AMMD]
Length = 300
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 128/247 (51%), Gaps = 22/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT + A + T + S HYV+ + V Q+VP++ RAWH
Sbjct: 56 IRFLVMHYTESDEAKSLRTLTGDSV----SVHYVVPPQPRIEHGMPVVYQLVPESKRAWH 111
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AGI +W+R LN+ SIGI VN G + + + + P+ Q+ L L KDIV+++ I
Sbjct: 112 AGISEWQRTTELNAASIGIENVNRGPLDPQ--NLTWQPYSPEQVDALIRLSKDIVARYGI 169
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A + P+
Sbjct: 170 APTRVVGHSDIAPQRKIDPGPLFPWQAL-AQAGVGAW--PDDATVAA---RLGDRDPHAL 223
Query: 214 KLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
R + L+L + YGY+V R V AF+ HF P + E A
Sbjct: 224 VDVRELQLKLAR-YGYDVPTDGVLDARTRRVFAAFQMHF----RPSDYAGNPDAETDAIA 278
Query: 269 WALVAKY 275
AL+ KY
Sbjct: 279 QALLDKY 285
>gi|167570075|ref|ZP_02362949.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
oklahomensis C6786]
Length = 297
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 132/255 (51%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ ++ V Q+VP
Sbjct: 42 DSR----IRFLVMHYTEIGEAQSLRVLTQENV----SAHYVVPDQPSLERGVPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + + P+ Q+ + L KD
Sbjct: 94 ESERAWHAGVSSWQGATELNGVSIGIENVNRGPI-DTPQGRMWAPYPPAQVDAIVRLAKD 152
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IVS+++I P V+GH+DIAP K DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 153 IVSRYQIPPTRVVGHSDIAPQRKTDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 206
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R VI AF+ HF P +
Sbjct: 207 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVIAAFQMHF----RPTDYVGNP 260
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 261 DAETDAIAQALLDKY 275
>gi|386743062|ref|YP_006216241.1| N-acetylmuramoyl-L-alanine amidase [Providencia stuartii MRSN 2154]
gi|384479755|gb|AFH93550.1| N-acetylmuramoyl-L-alanine amidase [Providencia stuartii MRSN 2154]
Length = 294
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 31/283 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMS-VKYLILHYTVYNFAHIITAFTSNRAHNL 61
S++ GY +D N Y SR+ V+Y++LHYTV + I T
Sbjct: 17 STLSPRQGYYVD---------NRYPSRNTSERVQYVVLHYTVSDDNQSIYLLTKGNV--- 64
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
SSHY+I + V+Q+VP++++AWHAG W NLN SIGI +VN G
Sbjct: 65 -SSHYLIPSTPSQENNKPVVLQLVPESLKAWHAGDSHWLNSSNLNDTSIGIEIVNSGFST 123
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++ + PF+++QI L L KDI+ ++ I Q ++GH+DIAP K DPG FPW +L
Sbjct: 124 DQNGRKIWAPFNQSQILALIPLVKDIMQRYNIPAQNIIGHSDIAPLRKEDPGRAFPWEEL 183
Query: 182 YLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGY-NVTITNK---- 236
GIGAW PD TV+ + P + + + L+ YGY + ++ +
Sbjct: 184 -AKQGIGAW--PDAATVKGYLSNRGKDEPS----NVLLLQKALRFYGYAEIPLSGELDGQ 236
Query: 237 -RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM 278
+ +I AF+ HF P I E A AL+ KY M
Sbjct: 237 TQQIISAFQMHF----RPRNIDGKADAETEAIALALIEKYRDM 275
>gi|312171920|emb|CBX80177.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC
BAA-2158]
Length = 280
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 134/278 (48%), Gaps = 28/278 (10%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
P + GY +D + Y R +K L++HYT +F + T
Sbjct: 24 PQGLQPQRGYTVD------TRQQAYGIRP--RIKVLVIHYTAGDFPRSLNVLTDRSV--- 72
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY++ KY V ++VP++M AWHAGI WR LN SIGI L N G
Sbjct: 73 -SAHYLLPAVPPKYDGQPLVWRLVPESMLAWHAGISFWRGATRLNDTSIGIELENPGW-H 130
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++ PF Q+ L L +DIV ++ I P V+ H+DIAP K DPGPLFPW L
Sbjct: 131 RTASGVSWAPFPAAQMAALLPLLRDIVERYAISPPDVVAHSDIAPMRKQDPGPLFPWRWL 190
Query: 182 YLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT----NKR 237
L G+GAW D + + RP +++D L LL +YGY V ++
Sbjct: 191 ALQ-GVGAWPDDDRVAF------YLAGRPASQRVDITKLLGLLASYGYEVPNPILPYQRQ 243
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
++I AF+ HF + R AD TE + A AL+ KY
Sbjct: 244 ALIAAFQMHFRPSDY--RGIADAETEAI--AAALLEKY 277
>gi|238920402|ref|YP_002933917.1| N-acetylmuramoyl-L-alanine amidase AmiD, putative [Edwardsiella
ictaluri 93-146]
gi|238869971|gb|ACR69682.1| N-acetylmuramoyl-L-alanine amidase AmiD, putative [Edwardsiella
ictaluri 93-146]
Length = 277
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 130/257 (50%), Gaps = 38/257 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNM 89
V+YL+LHYT +F + + S+HY++ +++G+ + V Q+VP++
Sbjct: 44 VRYLVLHYTAEDFPASLRVLMGKQV----SAHYLVPGLPPQRDGRPV----VWQLVPESR 95
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY----YPFDENQIHTLGLLGK 145
AWHAG+ WR +LN SIGI + N G +R T Y YPF Q+ + L +
Sbjct: 96 SAWHAGVSYWRGQTHLNDNSIGIEIENPG-----YRRTPYGIVWYPFTPQQMTAVRALAQ 150
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DIV ++ I PQ V+GH DIAP K+DPGPLFPW ++ GIGAW P+ V ++++
Sbjct: 151 DIVRRYAIAPQNVVGHMDIAPQRKVDPGPLFPW-QMLAQQGIGAW--PEAARVRVYLQRY 207
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADI 260
+ P D L +GY + + R I AF+ HF P +
Sbjct: 208 RQHLP-----DVAYLQRRLAQWGYQIVPSGINDVASRRAIAAFQMHF----RPTDFRGEP 258
Query: 261 TTEDMFWAWALVAKYGS 277
E + AL+A+YG+
Sbjct: 259 DAETIAIVDALIAQYGT 275
>gi|374319866|ref|YP_005066365.1| Negative regulator of beta-lactamase expression [Rickettsia slovaca
13-B]
gi|383751975|ref|YP_005427076.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia slovaca str. D-CWPP]
gi|360042415|gb|AEV92797.1| Negative regulator of beta-lactamase expression [Rickettsia slovaca
13-B]
gi|379774989|gb|AFD20345.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia slovaca str. D-CWPP]
Length = 247
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I+ ++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIVRYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW + F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWYDK---------QVFNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTEILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|423699217|ref|ZP_17673707.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
fluorescens Q8r1-96]
gi|387996260|gb|EIK57590.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
fluorescens Q8r1-96]
Length = 254
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 135/266 (50%), Gaps = 29/266 (10%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S+ G + +++L+ HYT NF+ + A T S+HY+I + + YL
Sbjct: 4 NYNSYRSKKGYNSRIRFLVFHYTAANFSSSVNALTGASV----SAHYLIPDITDPSYLNA 59
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G ++ +V +N RAWHAG+ W NLN SIGI +VN + ++ P+
Sbjct: 60 GFNDQQIFNLVDENQRAWHAGVSSWGGRTNLNDTSIGIEIVNRATDNQG--QFSFPPYQS 117
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + ++ DI+ ++ I P V+GH+DIA G K DPGP+FPW LY GIGAW
Sbjct: 118 RQIEAIEVVALDILKRYPDISPVNVVGHSDIAAGRKSDPGPMFPWQALYAK-GIGAWF-- 174
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHFSA 249
DE T +A R+ P + + L L K YGY+ T T + ++RAF+ HF
Sbjct: 175 DEPTQKA-YREVYQGNGLPTREQQ---LGLFKKYGYDTSAATTDTGFQRLVRAFQLHF-- 228
Query: 250 NQNPERIYADITTEDMFWAWALVAKY 275
P R + E ALV KY
Sbjct: 229 --RPARYDGVMDIETAANLAALVKKY 252
>gi|378952764|ref|YP_005210252.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens F113]
gi|359762778|gb|AEV64857.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens F113]
Length = 254
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 136/265 (51%), Gaps = 31/265 (11%)
Query: 21 KNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG 79
+++ Y+SR +++L+ HYT NF+ + A T S+HY+I + + YL G
Sbjct: 9 RSKKGYNSR----IRFLVFHYTAANFSSSVNALTGASV----SAHYLIPDITDPSYLDAG 60
Query: 80 ----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
++ +V +N RAWHAG+ W NLN SIG+ +VN + + ++ P++
Sbjct: 61 FNDQQIFNLVEENQRAWHAGVSSWGGRSNLNDTSIGVEIVN--LATDNHGQFSFPPYESR 118
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + +L DI+ ++ I P VLGH+DIA G K DPGP+FPW LY GIGAW D
Sbjct: 119 QIEAIEVLALDILKRYPDISPVNVLGHSDIAAGRKSDPGPMFPWQALYAK-GIGAWF--D 175
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSAN 250
E T +A ++ R+ G+F K YGY+ + + ++RAF+ HF
Sbjct: 176 ESTQKAYREVYQGNGLPTREQQIGLF----KKYGYDTSAATTHIGFQRLVRAFQLHF--- 228
Query: 251 QNPERIYADITTEDMFWAWALVAKY 275
P + + E ALV KY
Sbjct: 229 -RPAKYDGVMDIETAANLAALVKKY 252
>gi|398869965|ref|ZP_10625321.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM74]
gi|398210086|gb|EJM96743.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM74]
Length = 256
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 136/267 (50%), Gaps = 31/267 (11%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S + +++L+LHYT NF+ +A T S+HY++ + + YL
Sbjct: 5 NYNQYRSARSFNSRIRFLVLHYTAANFSSSFSALTGPNV----SAHYLVPDITDPSYLKA 60
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G +V +V +N RAWHAG+ +W NLN SIGI LVN + + + P+
Sbjct: 61 GYTGQEVFNLVDENHRAWHAGVSQWGNRSNLNDTSIGIELVN--LATDNKGEFTFPPYHS 118
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + L +I+ ++ I P VLGH+DI+ G K DPGP+FPW LYL G+GAW
Sbjct: 119 EQIAAIEQLALNILKRYPDITPTQVLGHSDISIGRKSDPGPMFPWQALYLK-GVGAWF-- 175
Query: 194 DEMTVEAIVRKF-KPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
DE T + + ++ P R L L K+YGY+V+ + + ++RAF+ HF
Sbjct: 176 DEATRDQYLSQYITSGIP-----GRSELLGLFKSYGYDVSGASTEGGFQQLVRAFQMHF- 229
Query: 249 ANQNPERIYADITTEDMFWAWALVAKY 275
PE + + ALV KY
Sbjct: 230 ---RPEHFDGKMDAQTAANLKALVVKY 253
>gi|383482805|ref|YP_005391719.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia montanensis str. OSU
85-930]
gi|378935159|gb|AFC73660.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia montanensis str. OSU
85-930]
Length = 247
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEERDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHECINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY + IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-NNDIGAWY--DEQV-------FNDLLPQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P D+ E +
Sbjct: 179 DITDIAAIQQKFITYGYKLEVTGILDSKMKDIIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|398948270|ref|ZP_10672684.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM33]
gi|398160924|gb|EJM49175.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM33]
Length = 256
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 139/268 (51%), Gaps = 29/268 (10%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N NHY S + +++LILHYT NF+ ++ T S+HY++ + + YL
Sbjct: 5 NYNHYRSTRSFNSRIRFLILHYTAANFSGSVSTLTGPNV----SAHYLVPDITDPSYLKA 60
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G +V +V ++ RAWHAG+ +W NLN SIGI +VN + + + P+
Sbjct: 61 GYSGQEVFNLVDESHRAWHAGVSQWGNRSNLNDTSIGIEVVN--LATDNKGQFTFPPYHP 118
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + L +I+ ++ I P VLGH+DI+ G K DPGP+FPW LYL G+GAW
Sbjct: 119 EQIAAIEQLALNILKRYPDITPTQVLGHSDISIGRKSDPGPMFPWQALYLK-GVGAWF-- 175
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSA 249
DE T + + ++ + R L L K+YGY+V+ + + ++RAF+ HF
Sbjct: 176 DEATRDQYLSQYTTS----GVPGRSELLGLFKSYGYDVSGASTEGGFQQLVRAFQMHF-- 229
Query: 250 NQNPERIYADITTEDMFWAWALVAKYGS 277
PE+ + + ALV KY S
Sbjct: 230 --RPEKFDGKMDAQTAANLKALVFKYFS 255
>gi|377576348|ref|ZP_09805332.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia hermannii NBRC
105704]
gi|377542380|dbj|GAB50497.1| N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia hermannii NBRC
105704]
Length = 276
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 128/254 (50%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE----KEGKYLPGGKVIQIVPDNM 89
VK L++HYT +F + T S+HY+I + + GK + + Q+VP+
Sbjct: 44 VKVLVIHYTADDFDSSLATLTDRNV----SAHYLIPDTPPVRNGKPV----IWQLVPEQE 95
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
AWHAGI WR +N SIGI L N G E + + F+ QI L L +DI++
Sbjct: 96 LAWHAGISFWRGTNRINDTSIGIELENRGWRREGGQK-RFTAFNPAQIAVLAKLARDIIN 154
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+ I P V+ H+DIAP K DPGPLFPW +L GIGAW PD V + +P
Sbjct: 155 SYNILPVNVVAHSDIAPQRKDDPGPLFPWAEL-AKQGIGAW--PDPARVNFWLMGRQPDE 211
Query: 210 PYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERI--YADITTE 263
P +D L+LL YGY V T ++ VI AF+ HF P R AD TE
Sbjct: 212 P----VDSAGLLKLLARYGYEVTPEMTPAQQKRVIEAFQMHF----RPARYDGVADAETE 263
Query: 264 DMFWAWALVAKYGS 277
+ A AL+ KYG
Sbjct: 264 AI--AEALLEKYGQ 275
>gi|334705875|ref|ZP_08521741.1| putative N-acetylmuramoyl-L-alanine amidase [Aeromonas caviae
Ae398]
Length = 296
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 25/237 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS-EKEGKYLPGGK 80
N+ H + + +LILHYT A + T H + S+HY+I + + + P
Sbjct: 45 NQEHQSASQNERIAFLILHYTDEEDARSLRLLTEPE-HKV-SAHYLIPRDTDEQPFP--- 99
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS-----TNYYPFDEN 135
V Q+VPD+ RAWHAG +W LN+ S+GI +VN G EK + ++ P+
Sbjct: 100 VYQLVPDSQRAWHAGRSRWHHYAGLNASSLGIEIVNLGY-DEKDAALPAHLRHWQPYPPA 158
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
QI LG L +D+V +++I P VL H+D+AP K DPGP FPW +L L YG+GAW PD
Sbjct: 159 QIAALGALARDLVERYQIPPTQVLAHSDVAPERKQDPGPRFPWRELALRYGVGAW--PD- 215
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
EA V + + + P D + + L YGY + R+ +RAF+ HF
Sbjct: 216 ---EARVAELRQTQLIP--WDALQWQQQLARYGYGLPQHGAWDEQSRAALRAFQLHF 267
>gi|292487801|ref|YP_003530676.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora CFBP1430]
gi|292899031|ref|YP_003538400.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC 49946]
gi|428784737|ref|ZP_19002228.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ACW56400]
gi|291198879|emb|CBJ45989.1| putative N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ATCC
49946]
gi|291553223|emb|CBA20268.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora CFBP1430]
gi|426276299|gb|EKV54026.1| N-acetylmuramoyl-L-alanine amidase [Erwinia amylovora ACW56400]
Length = 280
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 134/278 (48%), Gaps = 28/278 (10%)
Query: 2 PSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL 61
P + GY +D + Y R +K L++HYT +F + T
Sbjct: 24 PQGLQPQRGYTVD------TRQQAYGIRP--RIKVLVIHYTAGDFPRSLNVLTDRSV--- 72
Query: 62 HSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY++ KY V ++VP++M AWHAGI WR LN SIGI L N G
Sbjct: 73 -SAHYLLPAVPPKYDGQPLVWRLVPESMLAWHAGISFWRGATRLNDTSIGIELENPGW-H 130
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++ PF Q+ L + +DIV ++ I P V+ H+DIAP K DPGPLFPW L
Sbjct: 131 RTASGVSWAPFPAAQMAALLPMLRDIVERYAISPPDVVAHSDIAPMRKQDPGPLFPWRWL 190
Query: 182 YLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT----NKR 237
L G+GAW D + + RP +++D L LL +YGY V ++
Sbjct: 191 ALQ-GVGAWPDDDRVAF------YLAGRPASQRVDITKLLGLLASYGYEVPNPILPYQRQ 243
Query: 238 SVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
++I AF+ HF + R AD TE + A AL+ KY
Sbjct: 244 ALIAAFQMHFRPSDY--RGIADAETEAI--AAALLEKY 277
>gi|290475745|ref|YP_003468634.1| amidase [Xenorhabdus bovienii SS-2004]
gi|289175067|emb|CBJ81870.1| putative amidase [Xenorhabdus bovienii SS-2004]
Length = 290
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 132/256 (51%), Gaps = 22/256 (8%)
Query: 26 YDSRDGM-SVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
Y ++ G+ S ++L+LHYT N + + T S+HY+I + + Q+
Sbjct: 50 YSTKQGIDSARFLVLHYTALNDQNSLQILTGGNV----SAHYLIPSRPEYENKEPVIFQL 105
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V +N +AWHAG WR ++LNS SIGI +VN G + F + + +QI L L
Sbjct: 106 VSENEKAWHAGTSGWRGYKSLNSNSIGIEIVNCGF-KQHFIKKEWCLYHPSQIDALIRLV 164
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDI+ +++I+ V+GH+DIAP K DPGP+FPW LY GIGAW PD +TV +
Sbjct: 165 KDIIQRYQIEAVNVVGHSDIAPLRKKDPGPVFPWQALY-QQGIGAW--PDLITVNKYLAN 221
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYAD 259
P+ P P GI + L YGY++ T + +I+AF+ HF P I
Sbjct: 222 RVPSMPVPVI---GI-QKALALYGYSIPQTGHLDEDTHKIIQAFQMHF----RPSDISGV 273
Query: 260 ITTEDMFWAWALVAKY 275
E ALV KY
Sbjct: 274 PDAETEAIVLALVEKY 289
>gi|157965008|ref|YP_001499832.1| negative regulator of beta-lactamase expression [Rickettsia
massiliae MTU5]
gi|157844784|gb|ABV85285.1| Negative regulator of beta-lactamase expression [Rickettsia
massiliae MTU5]
Length = 249
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 29/248 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 20 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEEHDRAWH 70
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ E QI+++ L K I++++
Sbjct: 71 AGVSYWQGQERINDTSIGIEIVNPAFEVNAKNNDIVWLPYSERQINSVISLCKQIIARYD 130
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 131 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQV 180
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + +T + +I +F+ HF P ++ E +
Sbjct: 181 DITDIAAIQQKFITYGYKLEVTGILDSKMKDIIISFQMHF----RPSNFSGNLDAETIAI 236
Query: 268 AWALVAKY 275
AL+ KY
Sbjct: 237 LDALILKY 244
>gi|172060521|ref|YP_001808173.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria MC40-6]
gi|171993038|gb|ACB63957.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria MC40-6]
Length = 289
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 128/247 (51%), Gaps = 22/247 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT + A + T + S HYV+ + V Q+VP++ RAWH
Sbjct: 45 IRFLVMHYTESDEAKSLRTLTGDSV----SVHYVVPPQPRIEHGMPVVYQLVPESKRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AGI +W+R LN+ SIGI VN G + + + + P+ Q+ L L KDIV+++ I
Sbjct: 101 AGISEWQRTTELNAASIGIENVNRGPLDPQ--NLTWQPYSPEQVDALIRLSKDIVARYGI 158
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A + P+
Sbjct: 159 APTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAA---RLGDRDPHAL 212
Query: 214 KLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
R + L+L + YGY+V R V AF+ HF P + E A
Sbjct: 213 VDVRELQLKLAR-YGYDVPTDGVLDARTRRVFAAFQMHF----RPSDYAGNPDAETDAIA 267
Query: 269 WALVAKY 275
AL+ KY
Sbjct: 268 QALLDKY 274
>gi|333926500|ref|YP_004500079.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS12]
gi|333931453|ref|YP_004505031.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica AS9]
gi|386328323|ref|YP_006024493.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS13]
gi|333473060|gb|AEF44770.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia plymuthica AS9]
gi|333490560|gb|AEF49722.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS12]
gi|333960656|gb|AEG27429.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS13]
Length = 278
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 120/248 (48%), Gaps = 20/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L++HYT +F + T S+HY++ + Q+VP+ +RAWH
Sbjct: 45 IRFLVMHYTAEDFHSSLKTLTDEHV----SAHYLLPAHPLREQGKPVAFQLVPEALRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +LN SIGI +VN G + T + P+ Q L L +DI+ ++ I
Sbjct: 101 AGASYWRGRTSLNDTSIGIEIVNRGF-SRRMLFTRWQPYTPEQTALLIPLSRDIIQRYGI 159
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P V+GH+DIAP K DPGPLFPW +L + GIGAW E+ R A P
Sbjct: 160 QPPDVVGHSDIAPQRKQDPGPLFPWQQL-AEAGIGAWPDAAEVQRRLAGRDRHAAVPL-- 216
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
LE L YGY V +R+++ AF+ HF P + E
Sbjct: 217 ----APLLEKLARYGYGVDAQWDARQQRNLLAAFQMHF----RPSDFRGEPDAESEAIVD 268
Query: 270 ALVAKYGS 277
AL+ KYG+
Sbjct: 269 ALLQKYGA 276
>gi|251789973|ref|YP_003004694.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya zeae Ech1591]
gi|247538594|gb|ACT07215.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya zeae Ech1591]
Length = 289
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 126/253 (49%), Gaps = 25/253 (9%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
G V++L+ HYT N + + T+ S+HY++ + ++VP++
Sbjct: 48 GERVRFLVFHYTAENLSTSLETLTTGHV----SAHYLVPAYPRQVNGKPVAWKLVPESQA 103
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR LN+ S+GI N G + + P+ QI + L +DI+++
Sbjct: 104 AWHAGGSYWRGYSQLNATSVGIEQENPGWRQTALGTYWWQPYTPQQITLVTHLARDIIAR 163
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV---RKFKP 207
I PQ V+GH+DIAP K+DPGPLFPW +L L GIGAW PD V + + + P
Sbjct: 164 HHIAPQNVVGHSDIAPQRKVDPGPLFPWRQLALA-GIGAW--PDAQRVRFYLGDKQTYTP 220
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTE 263
A DRG L+ L YGY V + ++ V+ AF+ HF +R D E
Sbjct: 221 A-------DRGALLKKLACYGYEVNPGMSEDQQQRVVAAFQMHF----RQQRYDGDADAE 269
Query: 264 DMFWAWALVAKYG 276
A AL+ KYG
Sbjct: 270 TEAIADALLEKYG 282
>gi|372276188|ref|ZP_09512224.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea sp. SL1_M5]
Length = 274
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 112/218 (51%), Gaps = 16/218 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S+HY+I + + G + Q+VP+ AWH
Sbjct: 41 VKVIVIHYTAEDFSSSLATLTDREV----SAHYLIPRQPPQRAGKGVIWQLVPEQQLAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +N SIGI LVN G + PF QI TL L +DI ++ I
Sbjct: 97 AGSSFWRGASRINDTSIGIELVNQGYR-RTLTGLEWQPFTAAQITTLEALLRDIAQRYGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K DPGPLFPW +L G+GAW PD V+ + P P
Sbjct: 156 APENIVGHSDIAPQRKQDPGPLFPWHQL-AQRGMGAW--PDAGRVQFHLAGQDPHAVVPV 212
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHF 247
+ LE L+ YGY VT ++ VI AF+ HF
Sbjct: 213 E----PLLERLQRYGYPVTAEMSAREQQRVIAAFQMHF 246
>gi|386823442|ref|ZP_10110591.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica PRI-2C]
gi|386379653|gb|EIJ20441.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica PRI-2C]
Length = 255
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 29/258 (11%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-----LPGGKVIQIV 85
G V++L+LHYT NFA + + T S+HY++ + E + G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVQSLTGKSV----SAHYLVPDPEDQTYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
++ RAWHAG+ KW NLN +IGI +VN + + PF+ QI + L +
Sbjct: 72 DEDERAWHAGVSKWGNRNNLNDTAIGIEIVN--LASGDGEDITFPPFNPQQIAAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +LY G+GAW DE R+
Sbjct: 130 NILQRYPDITPINVVAHSDIAPGRKSDPGPQFPWHQLY-QAGVGAWY--DEAVKRQHQRE 186
Query: 205 FK-PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYAD 259
+ P R+L L L YGY+ + R ++RAF+ HF +R
Sbjct: 187 YHCQGVPAQREL-----LALFAKYGYDTSAATNAEGYRQLVRAFQLHF----RQQRYDGV 237
Query: 260 ITTEDMFWAWALVAKYGS 277
+ E ALV KY +
Sbjct: 238 MDVETAAILRALVDKYAA 255
>gi|268591559|ref|ZP_06125780.1| N-acetylmuramoyl-L-alanine amidase [Providencia rettgeri DSM 1131]
gi|291313013|gb|EFE53466.1| N-acetylmuramoyl-L-alanine amidase [Providencia rettgeri DSM 1131]
Length = 295
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 135/266 (50%), Gaps = 30/266 (11%)
Query: 24 NHYDSRDG-MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI----SEKEGKYLPG 78
N Y S++ ++Y+I+HYTV + A I T + SSH++I K G+ +
Sbjct: 27 NRYPSKNSSQRIQYVIIHYTVSDDARSIATLTQGKV----SSHFLIPSVPETKNGQPV-- 80
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
V+Q+VP++++AWHAG W + LN +SIGI +VN G + + P++E QI
Sbjct: 81 --VLQLVPESLKAWHAGESYWLQHNGLNDISIGIEIVNAGGQKDAKGKQLWAPYNEAQIV 138
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L +DI+ ++ I P+ ++GH+DIAP K DPG FPW +L +GIGAW P +T
Sbjct: 139 ALIPLIQDIMQRYSIPPENIIGHSDIAPLRKQDPGKAFPWQRL-AQHGIGAWPDPKTVT- 196
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYN-VTITNK-----RSVIRAFKTHFSANQN 252
KF R + L YGY+ + ++ K + +RAF+ HF
Sbjct: 197 -----KFLAGRNANEPASVLRIQKALNFYGYSTIPLSGKLDPQTKKTLRAFQLHF----R 247
Query: 253 PERIYADITTEDMFWAWALVAKYGSM 278
P I E A AL+ KY M
Sbjct: 248 PRDIEGQADAETEAIALALIEKYRDM 273
>gi|421784505|ref|ZP_16220944.1| N-acetylmuramoyl-L-alanine amidase amiD [Serratia plymuthica A30]
gi|407753347|gb|EKF63491.1| N-acetylmuramoyl-L-alanine amidase amiD [Serratia plymuthica A30]
Length = 255
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 29/258 (11%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-----LPGGKVIQIV 85
G V++L+LHYT NFA + + T S+HY++ + E + G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVQSLTGKSV----SAHYLVPDPEDQTYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
++ RAWHAG+ KW NLN +IGI +VN + + + PF+ QI + L +
Sbjct: 72 DEDERAWHAGVSKWGSRNNLNDTAIGIEIVN--LASGEGEDITFPPFNPQQIAAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +L+ G+GAW D+ + R+
Sbjct: 130 NILQRYPDITPINVVAHSDIAPGRKSDPGPQFPWRQLH-QAGVGAWY--DDAVKQRHQRE 186
Query: 205 FK-PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYAD 259
+ P R+L L L YGY+ + R ++RAF+ HF P++
Sbjct: 187 YHCQGIPAQREL-----LALFAKYGYDTSAATDAEGYRQLVRAFQLHF----RPQQYGGV 237
Query: 260 ITTEDMFWAWALVAKYGS 277
+ E ALV KY S
Sbjct: 238 MDVETAAILRALVDKYAS 255
>gi|153009062|ref|YP_001370277.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum anthropi ATCC
49188]
gi|151560950|gb|ABS14448.1| N-acetylmuramoyl-L-alanine amidase family 2 [Ochrobactrum anthropi
ATCC 49188]
Length = 268
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 36/264 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVI 68
G +DP P N RDG +LILHYT A A ++ ++ S+HY++
Sbjct: 24 GATLDPSP------NFGPRRDGKVPAFLILHYT--GLATAEEAVQVLKSPDMEVSAHYLV 75
Query: 69 SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
E G+++Q+V + RAWHAG W+ + ++NS SIGI +VN G + +
Sbjct: 76 HED-------GRIVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGNL------ED 122
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIG 188
Y PF + QI + L +DI ++ IKP+ +L H+DIAP K DPG FPW +L+ + GIG
Sbjct: 123 YPPFKDAQIDAVIRLCRDICERYTIKPENILAHSDIAPSRKTDPGHNFPWKRLH-EAGIG 181
Query: 189 AWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAF 243
++ P + + + + +P +L YGY + IT +VI+AF
Sbjct: 182 HYIEPTSIRGGRFLARGENGQPVE------ALQSMLALYGYEIAITGVFDEGTETVIKAF 235
Query: 244 KTHFSANQNPERIYADITTEDMFW 267
+ HF QN + + AD++T D +
Sbjct: 236 QRHFR-TQNVDGV-ADVSTIDTLY 257
>gi|440230266|ref|YP_007344059.1| negative regulator of beta-lactamase expression [Serratia
marcescens FGI94]
gi|440051971|gb|AGB81874.1| negative regulator of beta-lactamase expression [Serratia
marcescens FGI94]
Length = 276
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 118/243 (48%), Gaps = 17/243 (6%)
Query: 9 PGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI 68
PG +D +++ H +++L++HYT +F + T S+HY++
Sbjct: 20 PGTTVD-RGDYQLETLHQAQGADQRIRFLVMHYTAEDFQTSLKTLTDEHV----SAHYLL 74
Query: 69 SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
+ + Q+VP+ MRAWHAG WR LN SIGI +VN G T
Sbjct: 75 PAQPRRAHARPTAYQLVPEAMRAWHAGASSWRGRSQLNDTSIGIEIVNRGF-SRSMLFTR 133
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIG 188
+ P+ QI L L +DI+ ++ I+P V+GH+DIAP K DPGPLFPW L + GIG
Sbjct: 134 WQPYSAEQIALLIPLSRDIIRRYGIQPVDVVGHSDIAPQRKQDPGPLFPWQTL-AEAGIG 192
Query: 189 AWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFK 244
AW PD+ V + P P + LE L YGY + + V+ AF+
Sbjct: 193 AW--PDKEDVRRYLAGRDPHAP----VALAPLLEKLARYGYAIDPQWDERQQTRVLAAFQ 246
Query: 245 THF 247
HF
Sbjct: 247 MHF 249
>gi|91780400|ref|YP_555607.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
xenovorans LB400]
gi|91693060|gb|ABE36257.1| Putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
xenovorans LB400]
Length = 292
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 102/181 (56%), Gaps = 17/181 (9%)
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK----FRSTNYYPFDEN 135
+V +VP+ RAWHAG+ W+ +R LN+ S+GI +VN G + + +YP+
Sbjct: 72 RVYALVPEPRRAWHAGVSYWQGERMLNASSVGIEVVNLGFPAQDENVPLTNRRWYPYAPA 131
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
QI +G L D+V++ KI PQ V+GH+DIAPG K DPGPLFPW KLY Y +GAW PD
Sbjct: 132 QIAVVGKLAADVVARHKILPQKVVGHSDIAPGRKFDPGPLFPWQKLYEQYQVGAW--PDA 189
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSAN 250
+ + R ++P R D +L AYGY+ T SV+ AF+ HF
Sbjct: 190 EAI-SYYRSYQPFRG-----DIAELQAMLLAYGYDTPQTGVLDAQTLSVVGAFQMHFRPA 243
Query: 251 Q 251
Q
Sbjct: 244 Q 244
>gi|407452183|ref|YP_006723908.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-CH-1]
gi|403313167|gb|AFR36008.1| Negative regulator of beta-lactamase expression [Riemerella
anatipestifer RA-CH-1]
Length = 347
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 124/252 (49%), Gaps = 30/252 (11%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++LILHYT + + T S+HY++++ LP + Q+V +N RA+HA
Sbjct: 112 RFLILHYTALDNETSVRVLTQRGV----SAHYLVND-----LPDDNIWQLVDENKRAYHA 162
Query: 95 GIGKWRRDRNLNSMSIGIHLVN----GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
G WR +N SIGI +VN G GEK +YPF E+Q + L KDIV +
Sbjct: 163 GFSFWRNTTEMNDNSIGIEIVNKGYTTGTAGEKV----FYPFPEHQFKKVAALVKDIVER 218
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWL--SPDEMTVEAIVRKFKPA 208
+ I P +L H+DIAP K DPGP FPW +LY +Y +G W S + E + +
Sbjct: 219 YNIPPTQILAHSDIAPTRKQDPGPFFPWKRLYDEYNVGMWYDNSTKQNFYETALSDLE-- 276
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTE 263
Y L+++GY++T T + + VI AF+ HF PE+ + E
Sbjct: 277 FNYNNYAFISKVQNTLRSFGYDITPTGTWDKSSQKVIEAFQYHFR----PEKCDGVLDAE 332
Query: 264 DMFWAWALVAKY 275
AL+ KY
Sbjct: 333 TWAILQALIVKY 344
>gi|271500843|ref|YP_003333868.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya dadantii Ech586]
gi|270344398|gb|ACZ77163.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Dickeya dadantii Ech586]
Length = 290
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 131/254 (51%), Gaps = 27/254 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP--GGKVI--QIVP 86
G V++L+LHYT + + T+ + S+HY++ Y P GK + ++VP
Sbjct: 48 GERVRFLVLHYTAEDLDSSLETLTAEQV----SAHYLVP----AYPPRVNGKPVAWKLVP 99
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ AWHAG WR LN+ S+GI N G + + P+ QI + L +D
Sbjct: 100 ESQAAWHAGASYWRGYSQLNATSVGIEQENPGWRQTASGTHWWQPYTPQQIALVTSLARD 159
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I+++ I PQ V+GH+DIAP K+DPGPLFPW +L GIGAW PD A VR +
Sbjct: 160 IIARHHIAPQDVVGHSDIAPQRKVDPGPLFPWRQLAAS-GIGAW--PD----AARVRFYM 212
Query: 207 PARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITT 262
R +DR + L L YGY V + ++ V+ AF+ HF Q AD T
Sbjct: 213 GDRGKTMPVDRTVLLTKLACYGYEVKEGMSERQQKRVVAAFQMHF--RQQRYDGEADAET 270
Query: 263 EDMFWAWALVAKYG 276
E + A AL+ KYG
Sbjct: 271 EAI--ADALLEKYG 282
>gi|378582595|ref|ZP_09831232.1| N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp.
stewartii DC283]
gi|377814731|gb|EHT97849.1| N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp.
stewartii DC283]
Length = 253
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 135/269 (50%), Gaps = 30/269 (11%)
Query: 19 WEKNRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
++ + N Y S G + V++LI+HYT +F + I A T + S+HY++ + K
Sbjct: 2 YQVDYNSYRSVKGFNRRVRFLIMHYTALDFENSIIALTGSSV----SAHYLVPDPSDKSY 57
Query: 77 PGG-----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
G ++ +V +N RAWHAG+ W NLN SIGI VN + + + P
Sbjct: 58 AGAGFKDMRIFNLVDENERAWHAGVSSWAGRSNLNDTSIGIEAVN--LATDNNGVFTFPP 115
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
++ QI + L +I+ ++ I P V+GH+DIAPG K DPG FPW +LY GIGAW
Sbjct: 116 YNPVQIDAIKELALNILQRYPDITPVNVVGHSDIAPGRKSDPGAAFPWKELYA-AGIGAW 174
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTH 246
DE T + +F A P + +LK YGY+ + + + +IRAF+ H
Sbjct: 175 F--DEETKHKYLEQFSHALP-----SKDDVTGMLKRYGYDTSDSGSDAGYAQLIRAFQLH 227
Query: 247 FSANQNPERIYADITTEDMFWAWALVAKY 275
F P + TE +ALV KY
Sbjct: 228 F----RPCNYSGKLDTETAAILYALVEKY 252
>gi|310780098|ref|YP_003968430.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ilyobacter polytropus DSM 2926]
gi|309749421|gb|ADO84082.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ilyobacter polytropus DSM 2926]
Length = 262
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 121/257 (47%), Gaps = 51/257 (19%)
Query: 7 GMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
M Y ID K +N VK++ILHYT N I T SSHY
Sbjct: 16 SMVNYEIDNITYTAKGKNQ-------RVKFIILHYTACNDKISIKTLTKENV----SSHY 64
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEK 123
+I+ L + Q+V +N RAWHAG + NLN SIGI +VN G V GE
Sbjct: 65 LITT-----LRWDPIFQLVSENERAWHAGFSSFNGRTNLNDTSIGIEIVNLGFSEVDGE- 118
Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
+Y F+E+QI L K +F I+P +LGH+DIAPG K DPGP FPW +LY
Sbjct: 119 ---LQFYSFEESQIRKTAHLLKKTSKKFNIEPTNILGHSDIAPGRKSDPGPRFPWERLYK 175
Query: 184 DYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIF--------LELLKAYGYNVTIT- 234
++GIGAW + Y D IF K YGY++ I+
Sbjct: 176 EFGIGAWYDHAD---------------YNFYYDSAIFDIYSIEDIQSEFKKYGYDMEISG 220
Query: 235 ----NKRSVIRAFKTHF 247
+++V++AF+ HF
Sbjct: 221 QWNEKEKNVLKAFQMHF 237
>gi|424920676|ref|ZP_18344037.1| Negative regulator of beta-lactamase expression [Pseudomonas
fluorescens R124]
gi|404301836|gb|EJZ55798.1| Negative regulator of beta-lactamase expression [Pseudomonas
fluorescens R124]
Length = 259
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++I+HYT + A + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVIVHYTSASLARSLQLLT----HGEVSSHYLIGDDKS-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F+ T ++P+ E QI +L
Sbjct: 77 MDENQRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRRWFPYSEAQIQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W PDE V
Sbjct: 132 IVLLKDISQRQGISPRHIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGVW--PDEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F E L +GY+ T + R V+ AF+ HF
Sbjct: 189 QQAQFSAELP-----SISWFQEQLARFGYDTPQTGELDVATRHVLAAFQMHF 235
>gi|255534725|ref|YP_003095096.1| N-acetylmuramoyl-L-alanine amidase [Flavobacteriaceae bacterium
3519-10]
gi|255340921|gb|ACU07034.1| N-acetylmuramoyl-L-alanine amidase [Flavobacteriaceae bacterium
3519-10]
Length = 342
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
KY+ILHYT + + T SSHY+++ L ++ Q+V +N R++HA
Sbjct: 106 KYIILHYTALDDDKSVMVLTQQSV----SSHYLVNN-----LGDREIYQLVDENKRSYHA 156
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
GI WR D LN SIGI +VN G V + + FDE Q+ + L KDI ++ I
Sbjct: 157 GISTWRNDSMLNDTSIGIEIVNAGYVTDSTGVKIFPGFDEGQVKKVAALVKDIAGRYMIP 216
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
P +L H+DIAP K DPGP FPW KLY +Y IG W DE + + + P + +
Sbjct: 217 PTNILAHSDIAPTRKQDPGPKFPWKKLYDEYQIGMWY--DESAKQNFLNQLTPEQFSAQA 274
Query: 215 LDRGIFLE---LLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ LK GY + + + + I AF+ HF
Sbjct: 275 AESDFIYRYQLALKNLGYGLEASGRIDDSTKKTIEAFQYHF 315
>gi|383501096|ref|YP_005414455.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia australis str.
Cutlack]
gi|378932107|gb|AFC70612.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia australis str.
Cutlack]
Length = 248
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT F + T + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCGFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEEHDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN + K + + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEINTKNNNIVWLPYAERQINSVISLCKQIIAKYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNDIGAWY--DEQV-------FNDLLPQI 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + T + VI +F+ HF P D+ E +
Sbjct: 179 DITDIAATQQKFITYGYKLEATGILDSKMKDVIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|451941015|ref|YP_007461653.1| N-acetylmuramoyl-L-alanine amidase [Bartonella australis Aust/NH1]
gi|451900402|gb|AGF74865.1| N-acetylmuramoyl-L-alanine amidase [Bartonella australis Aust/NH1]
Length = 256
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 30/264 (11%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N+Y S S V++L++HYT NF ++A T SSHY++ + KE Y+ G
Sbjct: 7 NNYRSVKSFSRRVRFLVMHYTAINFKESVSALTGASV----SSHYLVPDPKEQTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V ++ RAWHAG+ W NLN SIGI +VN G + + + P++ Q
Sbjct: 63 KDMRIFNLVDEDKRAWHAGVSSWAGRNNLNDTSIGIEIVNLGSASNE--KSLFPPYNPTQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ + I P V+GH+DIA G K DPG FPW LY + GIGAW D+
Sbjct: 121 IDAVKELALNILQRHPDITPTNVVGHSDIAVGRKSDPGAAFPWKGLYAE-GIGAWY--DD 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
KF A P ++ L L YGYN +I +++IRAF+ HF
Sbjct: 178 KLKAQYQGKFMKALPTKTEV-----LSKLTRYGYNTSIAGTEDGYKTLIRAFQLHF---- 228
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
PE + E +ALV KY
Sbjct: 229 RPENYDGVLDAETAAVLFALVDKY 252
>gi|83718870|ref|YP_443036.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia thailandensis E264]
gi|167620198|ref|ZP_02388829.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis Bt4]
gi|257139266|ref|ZP_05587528.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia thailandensis E264]
gi|83652695|gb|ABC36758.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis E264]
Length = 299
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 132/258 (51%), Gaps = 33/258 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAQSLRVLTQENV----SAHYVVPDAPRTKRHAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSSWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYQIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQ---NPERIY 257
RP +D R + L+L + YGY+V R V AF+ HF + NP+
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFAAFQMHFRSTDYAGNPD--- 262
Query: 258 ADITTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 263 ----AETDAIAQALLDKY 276
>gi|354597978|ref|ZP_09015995.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Brenneria sp. EniD312]
gi|353675913|gb|EHD21946.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Brenneria sp. EniD312]
Length = 275
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY 75
F ++ + H +++L++HYT +F ++ T S+HY+I
Sbjct: 25 FGRYKVDAAHRAQAQESRIRFLVIHYTAEDFPTSLSTLTDEHV----SAHYLIPAHPP-- 78
Query: 76 LPGGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFD 133
L GK V Q+V ++ AWHAG WR LN+ SIGI L N G + PF
Sbjct: 79 LDRGKPVVWQLVAESQAAWHAGASGWRGFTRLNNSSIGIELENAGY-RRTLTGVKWTPFP 137
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI L + + IV ++ I PQ V+ H+DIAP K DPGPLFPW +L GIGAW P
Sbjct: 138 AAQIAVLSDMARQIVERYGIAPQNVVAHSDIAPLRKQDPGPLFPWEQL-ARAGIGAW--P 194
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSA 249
+ V + PARP +D L L YGY V + KR VI AF+ HF
Sbjct: 195 EAERVRFHLDGRDPARP----VDADRLLAKLVRYGYQVRDDMSARQKRQVIAAFQMHFRP 250
Query: 250 NQNPERIYADITTEDMFWAWALVAKYGS 277
R AD TE + A AL+ KY +
Sbjct: 251 RDY--RGEADTQTEAI--ADALLEKYAA 274
>gi|270262713|ref|ZP_06190984.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia odorifera 4Rx13]
gi|270043397|gb|EFA16490.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia odorifera 4Rx13]
Length = 255
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 29/258 (11%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-----LPGGKVIQIV 85
G V++L+LHYT NFA + + T S+HY++ + E + G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVQSLTGKSV----SAHYLVPDPEDQTYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
++ RAWHAG+ KW NLN +IGI +VN + + + PF+ QI + L +
Sbjct: 72 DEDERAWHAGVSKWGSRNNLNDTAIGIEIVN--LASGEGEDITFPPFNPQQIAAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +L+ G+GAW D+ + R+
Sbjct: 130 NILQRYPDITPINVVAHSDIAPGRKSDPGPQFPWHQLH-QAGVGAWY--DDAVKQRHQRE 186
Query: 205 FK-PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYAD 259
+ P R+L L L YGY+ + R ++RAF+ HF P++
Sbjct: 187 YHCQGIPAQREL-----LALFAKYGYDTSAATDAEGYRQLVRAFQLHF----RPQQYGGV 237
Query: 260 ITTEDMFWAWALVAKYGS 277
+ E ALV KY +
Sbjct: 238 MDVETAAILRALVDKYAA 255
>gi|121600474|ref|YP_993066.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia mallei SAVP1]
gi|251767766|ref|ZP_02268339.2| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei PRL-20]
gi|121229284|gb|ABM51802.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei SAVP1]
gi|243061766|gb|EES43952.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei PRL-20]
Length = 314
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 58 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 109
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 110 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 168
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 169 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 222
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 223 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 276
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 277 DAETDAIAQALLDKY 291
>gi|389694267|ref|ZP_10182361.1| negative regulator of beta-lactamase expression [Microvirga sp.
WSM3557]
gi|388587653|gb|EIM27946.1| negative regulator of beta-lactamase expression [Microvirga sp.
WSM3557]
Length = 255
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 131/250 (52%), Gaps = 40/250 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + +D +ILHYT + N + + ++V + G+V+Q
Sbjct: 19 NHGERKDAQRPSMVILHYTGMPDEGEALQWLCNPVSQVSAHYFVFGD--------GRVLQ 70
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG+ W ++NS SIGI + N G G PF + QI ++ L
Sbjct: 71 LVPEMRRAWHAGLSSWDGVTDINSCSIGIEIANPGHPG------GLPPFPDAQIESVAAL 124
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDIV++++I VLGH+D+APG K+DPG LFPW +L+ + G+G W++P + + R
Sbjct: 125 TKDIVTRWRIPQTRVLGHSDVAPGRKVDPGELFPWRRLH-EAGVGHWVAP---SATSDGR 180
Query: 204 KFKPARPYPRKLDRGIFLELLKA----YGYNVTIT-----NKRSVIRAFKTHFSANQNPE 254
F + D+G+ +E L+A YGY+V I + V+ AF+ HF PE
Sbjct: 181 FFS-------RGDQGMPIEALQAMLAMYGYSVRINGVFDEDTEKVVAAFQRHF----RPE 229
Query: 255 RI--YADITT 262
R+ AD +T
Sbjct: 230 RVDGVADAST 239
>gi|284007324|emb|CBA72681.1| N-acetylmuramoyl-L-alanine amidase [Arsenophonus nasoniae]
Length = 254
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 134/253 (52%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG----KVIQIVPDN 88
++L++HYT NF ITA T N S+HY++ + K Y G ++ +V +N
Sbjct: 19 TRFLVMHYTALNFQASITALTGNSV----SAHYLVPDPTDKTYQAAGFKDVRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN-GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG+ W NLN +IGI +VN G K + PF++ QI + L +I
Sbjct: 75 ERAWHAGVSFWAGRSNLNDTAIGIEIVNEAGYANGKMI---FPPFNDKQIDAVKELALNI 131
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + P ++ H+DIAPG K DPG FPW KLY + GIGAW +E + + +FK
Sbjct: 132 IQRYPDMLPTNIVAHSDIAPGRKSDPGAAFPWKKLY-NAGIGAWY--EEEIKQQYMAQFK 188
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVT-ITNKRS---VIRAFKTHFSANQNPERIYADITT 262
P ++ + LK YGY+V+ TN +IRAF+ HF + I DI T
Sbjct: 189 NKMP-----EKAEIVTKLKRYGYDVSQATNNNDYTKLIRAFQLHFRQSNYDGNI--DIET 241
Query: 263 EDMFWAWALVAKY 275
+ +ALVAKY
Sbjct: 242 VAIL--YALVAKY 252
>gi|167582033|ref|ZP_02374907.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis TXDOH]
Length = 299
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 132/258 (51%), Gaps = 33/258 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAQSLRVLTQENV----SAHYVVPDAPRTKRHAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESKRAWHAGVSSWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYQIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-ARAGVGAW--PDDETVAARLD--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQ---NPERIY 257
RP +D R + L+L + YGY+V R V AF+ HF + NP+
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFAAFQMHFRSTDYAGNPD--- 262
Query: 258 ADITTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 263 ----AETDAIAQALLDKY 276
>gi|53723478|ref|YP_102932.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei ATCC 23344]
gi|67640278|ref|ZP_00439091.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia mallei GB8
horse 4]
gi|254178543|ref|ZP_04885198.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
gi|254199874|ref|ZP_04906240.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei FMH]
gi|254206202|ref|ZP_04912554.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei JHU]
gi|52426901|gb|AAU47494.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 23344]
gi|147749470|gb|EDK56544.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei FMH]
gi|147753645|gb|EDK60710.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei JHU]
gi|160699582|gb|EDP89552.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei ATCC 10399]
gi|238520970|gb|EEP84425.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia mallei GB8
horse 4]
Length = 299
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|217423549|ref|ZP_03455050.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 576]
gi|217393407|gb|EEC33428.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 576]
Length = 299
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|134282269|ref|ZP_01768974.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 305]
gi|167911107|ref|ZP_02498198.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 112]
gi|237812097|ref|YP_002896548.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia pseudomallei
MSHR346]
gi|254179936|ref|ZP_04886535.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 1655]
gi|418541092|ref|ZP_13106591.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|418547332|ref|ZP_13112493.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
gi|134246307|gb|EBA46396.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 305]
gi|184210476|gb|EDU07519.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 1655]
gi|237503034|gb|ACQ95352.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia pseudomallei
MSHR346]
gi|385359020|gb|EIF64998.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258a]
gi|385361637|gb|EIF67519.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1258b]
Length = 299
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|76809231|ref|YP_333369.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1710b]
gi|76578684|gb|ABA48159.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 1710b]
Length = 285
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 29 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 80
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 81 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 139
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 140 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 193
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 194 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 247
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 248 DAETDAIAQALLDKY 262
>gi|406674453|ref|ZP_11081656.1| hypothetical protein HMPREF9700_02198 [Bergeyella zoohelcum CCUG
30536]
gi|405583734|gb|EKB57673.1| hypothetical protein HMPREF9700_02198 [Bergeyella zoohelcum CCUG
30536]
Length = 343
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 131/264 (49%), Gaps = 34/264 (12%)
Query: 23 RNHYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+NH+ S G +Y+ILHYT N + T S+HY++++ E ++
Sbjct: 102 KNHFPSLGQGFRQRYIILHYTALNNEASLRVLTQQAV----SAHYLVNDTED-----NEI 152
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTL 140
Q+V +N RA+HAG+ WR + NLN SIGI +VN + Y+P F + Q+ +
Sbjct: 153 YQLVDENKRAYHAGVSYWRGNNNLNDSSIGIEIVNQA---KDVPGGYYFPDFPDYQVKKV 209
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD--EMTV 198
L KDI +++ I PQ +L H+DIAP K DPGP FPW KLY DYGIG W D E +
Sbjct: 210 AELVKDIANRYGILPQNILAHSDIAPTRKQDPGPKFPWKKLYTDYGIGMWYDEDAKERFM 269
Query: 199 EAIVRK--FKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+V + + P+ Y + D L +G+N+ + + I AF+ F
Sbjct: 270 VQLVNEDLYAPSVIYQYQKD-------LNQFGFNIATSGMVDEATKKTITAFQYRFR--- 319
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
PE + E AL+ KY
Sbjct: 320 -PENYDGIMDVETYAILKALLQKY 342
>gi|333928187|ref|YP_004501766.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS12]
gi|333933140|ref|YP_004506718.1| N-acetylmuramoyl-L-alanine amidase [Serratia plymuthica AS9]
gi|386330011|ref|YP_006026181.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS13]
gi|333474747|gb|AEF46457.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia plymuthica AS9]
gi|333492247|gb|AEF51409.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS12]
gi|333962344|gb|AEG29117.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia sp. AS13]
Length = 255
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 29/258 (11%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-----LPGGKVIQIV 85
G V++L+LHYT NFA + + T S+HY++ + E + G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVQSLTGKSV----SAHYLVPDPEDQTYQAAGFSGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
++ RAWHAG+ KW NLN +IGI +VN + + + PF+ QI + L +
Sbjct: 72 DEDERAWHAGVSKWGSRNNLNDTAIGIEIVN--LASGEGEDITFPPFNPQQIAAVTQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +L+ G+GAW D+ + R+
Sbjct: 130 NILQRYPDITPINVVAHSDIAPGRKSDPGPQFPWRQLH-QAGVGAWY--DDAVKQHHQRE 186
Query: 205 FK-PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYAD 259
+ P R+L L L YGY+ + R ++RAF+ HF P++
Sbjct: 187 YHCQGIPTQREL-----LALFAKYGYDTSAATDAEGYRQLVRAFQLHF----RPQQYGGV 237
Query: 260 ITTEDMFWAWALVAKYGS 277
+ E ALV KY +
Sbjct: 238 MDVETAAILRALVDKYAA 255
>gi|53719485|ref|YP_108471.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
K96243]
gi|124384334|ref|YP_001026154.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei NCTC 10229]
gi|126450753|ref|YP_001080575.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia mallei NCTC 10247]
gi|167738753|ref|ZP_02411527.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 14]
gi|167815977|ref|ZP_02447657.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 91]
gi|167824351|ref|ZP_02455822.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 9]
gi|167894462|ref|ZP_02481864.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei 7894]
gi|167919126|ref|ZP_02506217.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei BCC215]
gi|226196393|ref|ZP_03791975.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
Pakistan 9]
gi|254188658|ref|ZP_04895169.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
Pasteur 52237]
gi|254197774|ref|ZP_04904196.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei S13]
gi|254261130|ref|ZP_04952184.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1710a]
gi|254297768|ref|ZP_04965221.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 406e]
gi|254358377|ref|ZP_04974650.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei 2002721280]
gi|386861904|ref|YP_006274853.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
gi|418387459|ref|ZP_12967322.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
gi|418534048|ref|ZP_13099899.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|418553511|ref|ZP_13118334.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|52209899|emb|CAH35871.1| putative N-acetylmuramoyl-L-alanine amidase [Burkholderia
pseudomallei K96243]
gi|124292354|gb|ABN01623.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10229]
gi|126243623|gb|ABO06716.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
mallei NCTC 10247]
gi|148027504|gb|EDK85525.1| putative N-acetylmuramoyl-L-alanine amidase protein [Burkholderia
mallei 2002721280]
gi|157807630|gb|EDO84800.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 406e]
gi|157936337|gb|EDO92007.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
Pasteur 52237]
gi|169654515|gb|EDS87208.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei S13]
gi|225931610|gb|EEH27615.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
Pakistan 9]
gi|254219819|gb|EET09203.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1710a]
gi|385360297|gb|EIF66236.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026a]
gi|385371664|gb|EIF76831.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354e]
gi|385376365|gb|EIF81056.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 354a]
gi|385659032|gb|AFI66455.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Burkholderia pseudomallei 1026b]
Length = 299
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|126439932|ref|YP_001058838.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 668]
gi|126219425|gb|ABN82931.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 668]
Length = 299
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|134295619|ref|YP_001119354.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia vietnamiensis G4]
gi|134138776|gb|ABO54519.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia vietnamiensis G4]
Length = 297
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 22/226 (9%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + + T + S HYV+ + V Q+VP
Sbjct: 49 DSR----IRFLVMHYTESDEVRALRTLTGDSV----SVHYVVPPQPRIERGEPVVYQLVP 100
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN++SIGI VN G + + RS + P+ Q+ L L KD
Sbjct: 101 ESKRAWHAGVSAWQGTTELNAVSIGIENVNRGPLDPQHRS--WQPYTPEQVDALIRLSKD 158
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 159 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAA---RLG 212
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
P+ R + L+L + YGY+V R V AF+ HF
Sbjct: 213 TRDPHALVDVRELQLKLAR-YGYDVPTDGVLDERSRRVFAAFQMHF 257
>gi|402702906|ref|ZP_10850885.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia helvetica C9P9]
Length = 248
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 124/250 (49%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+++ ++ + Q+V + RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINDENPEH-----IFQLVEEYDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + P+ + QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEVNAKNNDIIWLPYSKPQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D GIGAW R F
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DNGIGAWYD---------YRSFNDLLSQV 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + T + VI +F+ HF P D+ E +
Sbjct: 179 DITDIKAVQQKFITYGYKLEATGILDSKMKDVIISFQMHF----RPSNFSGDLDIETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|423316255|ref|ZP_17294160.1| hypothetical protein HMPREF9699_00731 [Bergeyella zoohelcum ATCC
43767]
gi|405584151|gb|EKB58073.1| hypothetical protein HMPREF9699_00731 [Bergeyella zoohelcum ATCC
43767]
Length = 343
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 131/264 (49%), Gaps = 34/264 (12%)
Query: 23 RNHYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+NH+ S G +Y+ILHYT N + T S+HY++++ E ++
Sbjct: 102 KNHFPSLGQGFRQRYIILHYTALNNEASLRVLTQQAV----SAHYLVNDTED-----NEI 152
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTL 140
Q+V +N RA+HAG+ WR + NLN SIGI +VN + Y+P F + Q+ +
Sbjct: 153 YQLVDENKRAYHAGVSYWRGNNNLNDSSIGIEIVNQA---KDVPGGYYFPDFPDYQVKKV 209
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD--EMTV 198
L KDI +++ I PQ +L H+DIAP K DPGP FPW KLY DYGIG W D E +
Sbjct: 210 AELVKDIANRYGILPQNILAHSDIAPTRKQDPGPKFPWKKLYTDYGIGMWYDEDAKERFM 269
Query: 199 EAIVRK--FKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+V + + P+ Y + D L +G+N+ + + I AF+ F
Sbjct: 270 VQLVNEDLYAPSVIYQYQKD-------LNQFGFNIATSGMVDEATKKTITAFQYRFR--- 319
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
PE + E AL+ KY
Sbjct: 320 -PENYDGIMDVETYAILKALLQKY 342
>gi|404318784|ref|ZP_10966717.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum anthropi CTS-325]
Length = 268
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 134/264 (50%), Gaps = 36/264 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVI 68
G +DP P N RDG +LILHYT A A ++ ++ S+HY++
Sbjct: 24 GATLDPSP------NFGPRRDGKVPAFLILHYT--GLATAEEAVQVLKSPDMEVSAHYLV 75
Query: 69 SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
E G+++Q+V + RAWHAG W+ + ++NS SIGI +VN G +
Sbjct: 76 HED-------GRIVQMVSEKARAWHAGKSFWKGETDINSASIGIEIVNPGNL------EG 122
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIG 188
Y PF + QI + L +DI + IKP+ VL H+DIAP K DPG FPW +L+ + GIG
Sbjct: 123 YPPFKDAQIDAVIRLCRDICERHAIKPENVLAHSDIAPSRKTDPGHNFPWKRLH-EAGIG 181
Query: 189 AWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAF 243
++ P + + + + +P +L YGY + IT +VI+AF
Sbjct: 182 HYIEPTSIRGGRFLARGENGQPVE------ALQSMLALYGYEIAITGVFDEGTETVIKAF 235
Query: 244 KTHFSANQNPERIYADITTEDMFW 267
+ HF QN + + AD++T D +
Sbjct: 236 QRHFR-TQNVDGV-ADVSTIDTLY 257
>gi|386015732|ref|YP_005934015.1| N-acetylmuramoyl-L-alanine amidase YbjR [Pantoea ananatis AJ13355]
gi|327393797|dbj|BAK11219.1| probable N-acetylmuramoyl-L-alanine amidase YbjR [Pantoea ananatis
AJ13355]
Length = 297
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 17/220 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+ HYT + A + T N S+HY+I E + Q+V ++ RAWH
Sbjct: 59 IRFLVFHYTAADNATSLKLLTGNNV----SAHYLIPESPDNTADKPLIYQLVHEDKRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W NLN S+GI +VN G +YP+DE QI L L + I+ ++ I
Sbjct: 115 AGVSNWNGRVNLNDSSVGIEIVNRGFSENMLGHKTWYPYDEKQIKALVALSRRIIQRYNI 174
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K DPG LFPW +L GIGAW P+ ++ + P P
Sbjct: 175 TPDNVVGHSDIAPLRKQDPGKLFPWKQLAAQ-GIGAW--PEAEKIKKYLNGRLPTAP--- 228
Query: 214 KLDRGIFLELLKAYGYNVT----ITNKRSV--IRAFKTHF 247
++ LLK YGY+ + ++ ++ I+AF+ HF
Sbjct: 229 -VNVHKMQVLLKTYGYDAIPQTGVLDEETIKTIQAFQMHF 267
>gi|238757813|ref|ZP_04618996.1| N-acetylmuramoyl-L-alanine amidase [Yersinia aldovae ATCC 35236]
gi|238704056|gb|EEP96590.1| N-acetylmuramoyl-L-alanine amidase [Yersinia aldovae ATCC 35236]
Length = 192
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 110/199 (55%), Gaps = 17/199 (8%)
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
+Q+VP+ RAWHAG+ W+ +LN SIGI +VN G R +YP++E+QI +
Sbjct: 1 MQLVPEEQRAWHAGVSNWQGRSSLNDTSIGIEIVNKGFTEGMLRR-EWYPYNESQIELIE 59
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDI+ ++ I+P V+ H+DIAP K DPGPLFPW +L + G+GAW PD+ TV
Sbjct: 60 RLSKDIIQRYNIEPTAVVAHSDIAPMRKSDPGPLFPWKRL-AEQGVGAW--PDDATVA-- 114
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI 256
++ R + + L YGY + + + R VI+AF+ HF A
Sbjct: 115 --QYIGGRNKQDMASVEVIQQALARYGYQIPQSGELDDETRQVIKAFQMHFRAADFSG-- 170
Query: 257 YADITTEDMFWAWALVAKY 275
D+ TE + A ALV KY
Sbjct: 171 VPDVETEAI--ALALVEKY 187
>gi|378767366|ref|YP_005195831.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea ananatis LMG 5342]
gi|365186844|emb|CCF09794.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea ananatis LMG 5342]
Length = 297
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 17/220 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+ HYT + A + T N S+HY+I E + Q+V ++ RAWH
Sbjct: 59 IRFLVFHYTAADNATSLKLLTGNNV----SAHYLIPESPDNTADKPLIYQLVHEDKRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W NLN S+GI +VN G +YP+DE QI L L + I+ ++ I
Sbjct: 115 AGVSNWNGRVNLNDSSVGIEIVNRGFSENMLGHKTWYPYDEKQIKALVALSRRIIQRYNI 174
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K DPG LFPW +L GIGAW P+ ++ + P P
Sbjct: 175 TPDNVVGHSDIAPLRKQDPGKLFPWKQLAAQ-GIGAW--PEAEKIKKYLNGRLPTAP--- 228
Query: 214 KLDRGIFLELLKAYGYNVT----ITNKRSV--IRAFKTHF 247
++ LLK YGY+ + ++ ++ I+AF+ HF
Sbjct: 229 -VNVHKMQVLLKTYGYDAIPQTGVLDEETIKTIQAFQMHF 267
>gi|340757346|ref|ZP_08693948.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium varium
ATCC 27725]
gi|251834610|gb|EES63173.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium varium
ATCC 27725]
Length = 275
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 133/266 (50%), Gaps = 44/266 (16%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +KY++LHYT N I A T SSHY+I+ KE + +VP
Sbjct: 36 DSR----IKYIVLHYTATNDEVGIRALTGPNV----SSHYLITSKEEE-----PTYALVP 82
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--------FRSTN-YYPFDENQI 137
RAWHAG+ ++ N+N SIGI ++N G+ FR + Y +D+ QI
Sbjct: 83 HEERAWHAGVSEFAGRSNINDTSIGIEIINMGIKAIPDAPKYDGFFRPYDEYVEYDDAQI 142
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ L K ++ Q++IKP++V+GH+DIAP K+DPGP FPW +LY +Y IGAW +
Sbjct: 143 KKVAALLKKLIEQYQIKPKFVVGHSDIAPLRKIDPGPKFPWERLYKEYNIGAWYDESDKI 202
Query: 198 V---EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
EA+ A I EL K YGY + T++ + V+ FK HF
Sbjct: 203 FFMNEALFNVTPIAE---------IKAELRK-YGYKINTTDEWDEESKRVVYNFKAHF-- 250
Query: 250 NQNPERIYADITTEDMFWAWALVAKY 275
NP+ + ++ E AL KY
Sbjct: 251 --NPKMLSEEMDLESFAILKALNKKY 274
>gi|291617354|ref|YP_003520096.1| hypothetical protein PANA_1801 [Pantoea ananatis LMG 20103]
gi|291152384|gb|ADD76968.1| YbjR [Pantoea ananatis LMG 20103]
Length = 297
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 17/220 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+ HYT + A + T N S+HY+I E + Q+V ++ RAWH
Sbjct: 59 IRFLVFHYTAADNATSLKLLTGNNV----SAHYLIPESPDNTADKPLIYQLVHEDKRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W NLN S+GI +VN G +YP+DE QI L L + I+ ++ I
Sbjct: 115 AGVSNWNGRVNLNDSSVGIEIVNRGFSENMLGHKTWYPYDEKQIKALVALSRRIIQRYNI 174
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K DPG LFPW +L GIGAW P+ ++ + P P
Sbjct: 175 TPDNVVGHSDIAPLRKQDPGKLFPWKQLAAQ-GIGAW--PEAEKIKKYLNGRLPTAP--- 228
Query: 214 KLDRGIFLELLKAYGYNVT----ITNKRSV--IRAFKTHF 247
++ LLK YGY+ + ++ ++ I+AF+ HF
Sbjct: 229 -VNVHKMQVLLKTYGYDAIPQTGVLDEETIKTIQAFQMHF 267
>gi|167836766|ref|ZP_02463649.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis MSMB43]
gi|424904247|ref|ZP_18327757.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis MSMB43]
gi|390930225|gb|EIP87627.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
thailandensis MSMB43]
Length = 299
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 133/255 (52%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAQSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGTTELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVTRYQIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVT---ITNKRS--VIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY++ + + R+ V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDIATDGVLDDRTQRVFAAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|238785170|ref|ZP_04629163.1| Negative regulator of beta-lactamase expression [Yersinia
bercovieri ATCC 43970]
gi|238713918|gb|EEQ05937.1| Negative regulator of beta-lactamase expression [Yersinia
bercovieri ATCC 43970]
Length = 257
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 130/251 (51%), Gaps = 25/251 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG----KVIQIVPDNM 89
V++L+LHYT NF I + T + N+ + V + Y+ G ++ +V +N
Sbjct: 19 VRFLVLHYTAENFEGSIKSLTGD---NVSVQYLVPDITDESYIQAGFKDMQIFNLVDENA 75
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG+ W NLN SIGI +VN + E ++ P+ QI + L +I+
Sbjct: 76 RAWHAGVSSWAERTNLNDTSIGIEIVN--LATENKGVWHFPPYTAVQIAAVKQLAANILQ 133
Query: 150 QF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
++ +I P V+ H+DIAP K DPGP FPW +LY + GIGAW P+ T E +++F A
Sbjct: 134 RYPEISPVNVVAHSDIAPTRKSDPGPEFPWQELY-EEGIGAWYDPE--TKEKFIQEFT-A 189
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTITNKR----SVIRAFKTHFSANQNPERIYADITTED 264
P K + + YGY+ TI + ++RAF+ HF N + DI T
Sbjct: 190 EGLPNKAE---IVAHFGTYGYDATIASSELGYHDLVRAFQLHFRPNNYDGEV--DIETAA 244
Query: 265 MFWAWALVAKY 275
+ +ALV KY
Sbjct: 245 IL--YALVEKY 253
>gi|238921292|ref|YP_002934807.1| N-acetylmuramoyl-L-alanine amidase domain protein [Edwardsiella
ictaluri 93-146]
gi|238870861|gb|ACR70572.1| N-acetylmuramoyl-L-alanine amidase domain protein [Edwardsiella
ictaluri 93-146]
Length = 256
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 28/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF + A T + S+HY+I + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTAINFKASVAALTGSSV----SAHYLIPDPSEKTYIDAGFNDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
R+WHAG W NLN +IGI +VN + + + P++ QI + L +I+
Sbjct: 75 ERSWHAGSSSWAGRTNLNDTAIGIEIVN--LATDNNNVFVFPPYNPTQIAAIKELAANIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P ++GH+DIAPG K DPG FPW LY + GIGAW +E T++ + +F
Sbjct: 133 QRYPDITPTNIVGHSDIAPGRKSDPGAAFPWKALY-EAGIGAWY--EESTMQHYLAQF-- 187
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
++ P K D + LK YGY+ + K R++IRAF+ HF Q AD T
Sbjct: 188 SKSLPAKAD---IIAKLKTYGYDTSDAGKESGYRNLIRAFQLHF--RQKNYDGGADAETT 242
Query: 264 DMFWAWALVAKY 275
+ +ALV KY
Sbjct: 243 AIL--YALVEKY 252
>gi|157826369|ref|YP_001494089.1| hypothetical protein A1C_06790 [Rickettsia akari str. Hartford]
gi|157800327|gb|ABV75581.1| hypothetical protein A1C_06790 [Rickettsia akari str. Hartford]
Length = 248
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V ++ RAWH
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEEHDRAWH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN + K + + P+ E QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFEINTKNNNIVWIPYAERQINSVISLCKQIIAKYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY + IGAW DE F P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-NNDIGAWY--DEQV-------FNDLLPQI 178
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
+ + YGY + T + VI +F+ HF P D+ E +
Sbjct: 179 DITNIAAIQQKFITYGYKLEATGILDSKMKDVIISFQMHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|126455255|ref|YP_001066086.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1106a]
gi|167845893|ref|ZP_02471401.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
B7210]
gi|167902865|ref|ZP_02490070.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei NCTC
13177]
gi|242317361|ref|ZP_04816377.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1106b]
gi|403518520|ref|YP_006652653.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
BPC006]
gi|126228897|gb|ABN92437.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1106a]
gi|242140600|gb|EES27002.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
1106b]
gi|403074162|gb|AFR15742.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei
BPC006]
Length = 299
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGAPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARL---- 206
Query: 207 PARPYPRKLDRGIFLEL-LKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
A P+ L L+L L YGY+V R V AF+ HF P +
Sbjct: 207 -AGRSPKSLVDVRELQLKLARYGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|167719758|ref|ZP_02402994.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia
pseudomallei DM98]
Length = 299
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT A + T S+HYV+ + V Q+VP
Sbjct: 43 DSR----IRFLVMHYTEIGEAPSLRVLTQENV----SAHYVVPDAPRTERGVPVVYQLVP 94
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ W+ LN +SIGI VN G + + + P+ Q+ + L KD
Sbjct: 95 ESERAWHAGVSAWQGATELNGVSIGIENVNRGPI-DTPHGRMWAPYPPAQVDAIVRLAKD 153
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV++++I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A +
Sbjct: 154 IVARYRIPPTRVVGHSDIAPQRKIDPGPLFPWRAL-AKAGVGAW--PDDETVAARLA--- 207
Query: 207 PARPYPRKLD-RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D R + L+L + YGY+V R V AF+ HF P +
Sbjct: 208 -GRPPKSLVDVRELQLKLAR-YGYDVATDGVLDDRTRRVFSAFQMHF----RPTDYAGNP 261
Query: 261 TTEDMFWAWALVAKY 275
E A AL+ KY
Sbjct: 262 DAETDAIAQALLDKY 276
>gi|398858528|ref|ZP_10614217.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM79]
gi|398238987|gb|EJN24706.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM79]
Length = 255
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++LI HYT NF+ + A T S+HY++ + + YL G +V +V +
Sbjct: 19 VRFLIFHYTAGNFSSSVNALTGPNV----SAHYLVPDITDPSYLKAGYTGQEVFNLVDET 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIG+ +VN + N+ P+ QI + L +I+
Sbjct: 75 KRAWHAGVSTWGNRSNLNDTSIGVEIVNLATFSQGV--FNFPPYQPEQIAAIEELALNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P VLGH+DIA G K DPGP FPW LYL G+GAW D+ T + ++++
Sbjct: 133 ERYPDISPTLVLGHSDIAVGRKSDPGPKFPWHALYLK-GVGAWF--DDATRDTFLQQYNE 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPERIYADITTE 263
P + D L+L K YGY+V+ + ++RAF+ HF PE + +
Sbjct: 190 TG-IPARSD---LLKLFKTYGYDVSGASTEQGFTHLVRAFQLHF----RPETYDGIMDVQ 241
Query: 264 DMFWAWALVAKY 275
ALV KY
Sbjct: 242 TAANLAALVDKY 253
>gi|67459776|ref|YP_247400.1| N-acetylmuramoyl-L-alanine amidase [Rickettsia felis URRWXCal2]
gi|67005309|gb|AAY62235.1| AmpD protein homolog [Rickettsia felis URRWXCal2]
Length = 248
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 29/250 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K+L+LHYT +F + T + SSHY+I+ + ++ + Q+V ++ RA H
Sbjct: 18 IKFLVLHYTQCDFKQSLDFLTGEKL----SSHYLINNENPEH-----IFQLVEEHDRARH 68
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
AG+ W+ +N SIGI +VN V K + + P+ + QI+++ L K I++++
Sbjct: 69 AGVSYWQGHERINDTSIGIEIVNPAFKVNAKNNNITWLPYSKQQINSVISLCKQIIARYD 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP V+GH+DIAPG K DPGPLFPW LY D IGAW E I K P
Sbjct: 129 IKPTRVVGHSDIAPGRKQDPGPLFPWKLLY-DSDIGAWYD------EQIFNKLLPQVDIT 181
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
D + YGY + T + VI +F+ HF P D+ E +
Sbjct: 182 ---DIKAIQQKFITYGYKLEATGILDSKMKDVIISFQIHF----RPSNFSGDLDAETIAI 234
Query: 268 AWALVAKYGS 277
AL+ KY S
Sbjct: 235 LDALILKYKS 244
>gi|171317518|ref|ZP_02906708.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria MEX-5]
gi|171097347|gb|EDT42192.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria MEX-5]
Length = 289
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 131/248 (52%), Gaps = 24/248 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
+++L++HYT + A + T + S HYV+ ++ + G V+ Q+VP++ RAW
Sbjct: 45 IRFLVMHYTESDEAKSLRTLTGDSV----SVHYVVP-RQPRIEHGMPVVYQLVPESKRAW 99
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAGI +W+ LN+ SIGI VN G + + + + P+ +QI L L KD+V ++
Sbjct: 100 HAGISEWQGTTELNAASIGIENVNRGPLDPQ--NLTWQPYSPDQIDALIRLSKDVVVRYG 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A + P+
Sbjct: 158 IPPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAA---RLGGRDPHA 211
Query: 213 RKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
R + L+L + YGY+V R V AF+ HF P + E
Sbjct: 212 LVDVRELQLKLAR-YGYDVPTDGVLDARTRRVFAAFQMHF----RPSDYAGNPDAETDAI 266
Query: 268 AWALVAKY 275
A AL+ KY
Sbjct: 267 AQALLDKY 274
>gi|437189908|ref|ZP_20710699.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435232469|gb|ELO13565.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
Length = 232
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 103/204 (50%), Gaps = 24/204 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV 231
P +D L LL YGY V
Sbjct: 210 YTP----VDTATVLALLSRYGYEV 229
>gi|378955742|ref|YP_005213229.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|357206353|gb|AET54399.1| putative N-acetylmuramoyl-L-alanine amidase [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
Length = 238
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 103/204 (50%), Gaps = 24/204 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V + P
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQHVAFYLAGRAP 209
Query: 208 ARPYPRKLDRGIFLELLKAYGYNV 231
P +D L LL YGY V
Sbjct: 210 YTP----VDTATVLALLSRYGYEV 229
>gi|440757630|ref|ZP_20936813.1| N-acetylmuramoyl-L-alanine amidase [Pantoea agglomerans 299R]
gi|436428619|gb|ELP26273.1| N-acetylmuramoyl-L-alanine amidase [Pantoea agglomerans 299R]
Length = 274
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S HY+I + + G V Q+VP+ AWH
Sbjct: 41 VKVIVIHYTAEDFSSSLATLTDREV----SVHYLIPRQPPQRAGKGIVWQLVPEQQLAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +N SIGI LVN G + PF QI TL L +DI ++ I
Sbjct: 97 AGPSFWRGASRINDTSIGIELVNRGYR-RTLTGLEWQPFTAAQIITLEALVRDIAQRYGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K DPGPLFPW +L G+GAW PD V+ + P P
Sbjct: 156 PPENIVGHSDIAPQRKQDPGPLFPWQQL-AQRGLGAW--PDAGRVQFYLAGQDPHAQVPV 212
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHF 247
+ +E L+ +GY T ++ VI AF+ HF
Sbjct: 213 Q----PLMENLQRFGYAATAEMSAREQQKVIAAFQMHF 246
>gi|218517152|ref|ZP_03513992.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli 8C-3]
Length = 253
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 127/264 (48%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + DG ++LHYT + RA + SSHY +
Sbjct: 10 GACVRPSP------NHGERADGRRPDMILLHYTGMPTPDGALDWLC-RAESQVSSHYFVH 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG W R+ ++NS+SIGI + N G G
Sbjct: 63 EN-------GEVIQLVPEGRRAWHAGKSSWHRESDINSLSIGIEIANAGHPG----GLPD 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
YP + QI + L +D V ++ I P+ VLGH+D+AP K+DPG FPW L+ G+G
Sbjct: 112 YP--KEQIAAVIELCRDCVKRWSIAPERVLGHSDVAPVRKVDPGEKFPWAALHR-AGVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P ++T ++ +P +L YGY IT + S + AF+
Sbjct: 169 WVEPAKITGGRFFQRGDAGQPVE------ALQSMLSLYGYGTDITGEFSEGTAGDVEAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF PER+ AD +T D
Sbjct: 223 RHF----RPERVDGIADFSTIDTL 242
>gi|260889610|ref|ZP_05900873.1| N-acetylmuramoyl-L-alanine amidase domain protein [Leptotrichia
hofstadii F0254]
gi|260861021|gb|EEX75521.1| N-acetylmuramoyl-L-alanine amidase domain protein [Leptotrichia
hofstadii F0254]
Length = 322
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+++ILHYT + + A T+N S+HY+IS ++ V +V +N RAWHA
Sbjct: 97 RFIILHYTAMDRDGSLRALTNNEV----SAHYLISNQKND-----PVFYLVDENRRAWHA 147
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G +W+ +NLN SIGI +VN G V F PF + QI + +L K + +++I
Sbjct: 148 GASEWKTSKNLNDSSIGIEIVNSGNVSGSFE-----PFRDFQIKDVAVLVKYLADKYEIP 202
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+LGH+DIAP K DPGPLFPW +LY Y IG W D + A
Sbjct: 203 ATNILGHSDIAPQRKPDPGPLFPWEELYRKYNIGMWYDNDRKSAFENEYSLSWA-----S 257
Query: 215 LDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
L L +GY+++ T + ++VI+ F+ HF
Sbjct: 258 LPAATVQAELSKFGYSISTTGRWDEQTKNVIKVFQYHF 295
>gi|238898574|ref|YP_002924255.1| amidase and lipoprotein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|238898575|ref|YP_002924256.1| amidase and lipoprotein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466333|gb|ACQ68107.1| predicted amidase and lipoprotein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466334|gb|ACQ68108.1| predicted amidase and lipoprotein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 274
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ ++LHYT N + T + S+HY+I K V+Q+VP++ RAWH
Sbjct: 42 INSIVLHYTALNDEKSLKVLTQQKV----SAHYLILINPKKIGNKPVVLQLVPEDKRAWH 97
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR NLN S+GI +VN G F +YPF++ Q + L KD+V ++ I
Sbjct: 98 AGSSYWRNRTNLNDTSLGIEIVNLGY-KPMFFGKRWYPFNDQQRVLIERLTKDLVKRYDI 156
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
KP VL H+DIAP K DPGPLF W +L G+GAW PD++ +V+K+ R
Sbjct: 157 KPTNVLAHSDIAPLRKHDPGPLFFWERL-AKIGVGAW--PDQV----VVKKYIGPRNIKD 209
Query: 214 KLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+LL YGY + T + + V AF+ HF + R D TE + A
Sbjct: 210 LASVANIQKLLAQYGYTIPQTGQLDPDTKKVNSAFQMHFRPSDFSGR--PDAQTEAI--A 265
Query: 269 WALVAKYG 276
AL+ KY
Sbjct: 266 AALLEKYS 273
>gi|157371447|ref|YP_001479436.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia proteamaculans 568]
gi|157323211|gb|ABV42308.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Serratia proteamaculans 568]
Length = 255
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 128/257 (49%), Gaps = 27/257 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY-----LPGGKVIQIV 85
G V++L+LHYT NFA + + T S+HY++ + E + G ++ +V
Sbjct: 16 GHRVRFLVLHYTAQNFADSVQSLTGKSV----SAHYLVPDPEDQSYQAAGFNGVRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG +W NLN SIGI +VN + + PF+ QI + L +
Sbjct: 72 DEVERAWHAGASQWGNRNNLNDTSIGIEIVN--LASGDGEDITFPPFNPQQIAAVSQLAQ 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ I P V+ H+DIAPG K DPGP FPW +LYL G+GAW DE +
Sbjct: 130 NILQRYPDITPVNVVAHSDIAPGRKSDPGPKFPWRQLYL-AGVGAWY--DEAVKHRHQHE 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
++ + P + D L L YGY+ + R ++RAF+ HF Q D+
Sbjct: 187 YQ-CQGLPAQPD---LLALFAKYGYDTSAATNAEGYRQLVRAFQLHF--RQRKYDGVMDV 240
Query: 261 TTEDMFWAWALVAKYGS 277
T + ALV KY +
Sbjct: 241 ETAAIL--RALVDKYAA 255
>gi|308186230|ref|YP_003930361.1| N-acetylmuramoyl-L-alanine amidase [Pantoea vagans C9-1]
gi|308056740|gb|ADO08912.1| N-acetylmuramoyl-L-alanine amidase [Pantoea vagans C9-1]
Length = 274
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 111/218 (50%), Gaps = 16/218 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S+HY++ + + G + Q+VP+ AWH
Sbjct: 41 VKVIVVHYTAEDFSSSLATLTDREV----SAHYLVPRQPPQRAGKGVIWQLVPEQQLAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +N SIGI LVN G + PF QI TL L +DI ++ I
Sbjct: 97 AGPSFWRGATRINDTSIGIELVNRGYR-RTLTGLEWQPFTAAQITTLEALVRDIAQRYGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K DPGPLF W +L G+GAW PD V+ + P P
Sbjct: 156 PPENIVGHSDIAPQRKQDPGPLFLWQQL-AQRGLGAW--PDAGRVQFYLAGQDPHARVPV 212
Query: 214 KLDRGIFLELLKAYGYNVT----ITNKRSVIRAFKTHF 247
+ +E L+ YGY VT ++ VI AF+ HF
Sbjct: 213 QQ----LMESLQRYGYAVTAGMSAREQQKVIAAFQMHF 246
>gi|307130772|ref|YP_003882788.1| N-acetylmuramoyl-L-alanine amidase ybjR [Dickeya dadantii 3937]
gi|306528301|gb|ADM98231.1| Probable N-acetylmuramoyl-L-alanine amidase ybjR [Dickeya dadantii
3937]
Length = 290
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 11/247 (4%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
G V++L+ HYT N + T+ R S+HY++ + ++VP++
Sbjct: 45 GERVRFLVFHYTAENLGDSLETLTTERV----SAHYLVPAYPLQVNGKPVAWKLVPESQT 100
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR LN+ SIGI VN G + + P+ QI + L +DI+++
Sbjct: 101 AWHAGTSYWRGYSQLNATSIGIEQVNPGWRQTASGTRWWQPYTPQQITLVTHLARDIIAR 160
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
+ I PQ V+GH+DIAP K+DPGPLFPW +L + GIGAW P V + R
Sbjct: 161 YHIAPQDVVGHSDIAPQRKVDPGPLFPWHQLAMA-GIGAWPEPQR------VHFYLKGRQ 213
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWA 270
++R + L+ L YGY V+ S + F + +R + E A A
Sbjct: 214 EYAPVERNVLLDKLARYGYEVSPEMTASQQQQVVAAFQMHFRQQRYDGEADAETEAIADA 273
Query: 271 LVAKYGS 277
L+ KYG+
Sbjct: 274 LLEKYGA 280
>gi|170698708|ref|ZP_02889774.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria IOP40-10]
gi|170136412|gb|EDT04674.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ambifaria IOP40-10]
Length = 289
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 130/249 (52%), Gaps = 26/249 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI-QIVPDNMRAW 92
+++L++HYT + A + T + S HYV+ + + + G V+ Q+VP++ RAW
Sbjct: 45 IRFLVMHYTESDEAKSLRTLTGDSV----SVHYVVPPQP-RIVHGMPVVYQLVPESKRAW 99
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAGI +W+ LN+ SIGI VN G + + + + P+ Q+ L L KDIV+++
Sbjct: 100 HAGISEWQGTTELNAASIGIENVNRGPLDPQ--NLTWQPYSPEQVDALIRLSKDIVARYG 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P V+GH+DIAP K+DPGPLFPW L G+GAW PD+ TV A + P
Sbjct: 158 IAPTRVVGHSDIAPQRKIDPGPLFPWHAL-AQAGVGAW--PDDATVAARLGGRD-----P 209
Query: 213 RKLDRGIFLEL-LKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERIYADITTEDMF 266
+L L+L L YGY+V R V AF+ HF P + E
Sbjct: 210 HELVDVHELQLKLARYGYDVPADGVLDARTRRVFAAFQMHF----RPSDYAGNPDAETDA 265
Query: 267 WAWALVAKY 275
A AL+ KY
Sbjct: 266 IAQALLDKY 274
>gi|423141267|ref|ZP_17128905.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379050439|gb|EHY68331.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 256
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 30/264 (11%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + V++L++HYT +F ITA T S+HY++ + E Y+ G
Sbjct: 7 NSYRSVKGFNRRVRFLVMHYTAIDFKASITALTGPSV----STHYLVPDPSEQTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAG+ W NLN +IGI VN + + + P++ Q
Sbjct: 63 KDMRIFNLVDENERAWHAGVSSWAGRSNLNDTAIGIETVN--LACDNNGVFVFPPYNPVQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIAPG K DPG FPW LY D GIGAW +E
Sbjct: 121 IDAIKELAANILQRYPDITPVNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWY--EE 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQ 251
T++ + +F ++ P K D + LK YGY++ T +++IR F+ HF +
Sbjct: 178 STMQHYLTQF--SKSVPSKAD---IVAKLKEYGYDISEVGTEIGYKNLIRTFQLHFR-QK 231
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + + AD T + +ALV KY
Sbjct: 232 NYDGV-ADAETTAIL--YALVDKY 252
>gi|304397045|ref|ZP_07378924.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pantoea sp. aB]
gi|304355194|gb|EFM19562.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pantoea sp. aB]
Length = 274
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S HY+I + + G V Q+VP+ AWH
Sbjct: 41 VKVIVIHYTAEDFSSSLATLTDREV----SVHYLIPRQPPQRAGKGIVWQLVPEQQLAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR +N SIGI LVN G + PF QI TL L +DI ++ I
Sbjct: 97 AGPSFWRGASRINDTSIGIELVNRGYR-RTLTGLEWQPFTAAQIITLEALVRDIAQRYGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K DPGPLFPW +L G+GAW PD V+ + P P
Sbjct: 156 PPENIVGHSDIAPQRKQDPGPLFPWHQL-AQRGLGAW--PDAGRVQFYLAGQDPHAQVPV 212
Query: 214 KLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHF 247
+ +E L+ +GY T ++ VI AF+ HF
Sbjct: 213 Q----PLMENLQRFGYAATAEMSAREQQKVIAAFQMHF 246
>gi|340750644|ref|ZP_08687482.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium
mortiferum ATCC 9817]
gi|229420272|gb|EEO35319.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium
mortiferum ATCC 9817]
Length = 275
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 32/231 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+KY+I+HYT + A T SSHY+I+ K+ + + +V + RAWH
Sbjct: 39 IKYIIIHYTATTDEVSVRALTKGNV----SSHYLITSKDEE-----PIYNLVSLDKRAWH 89
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVG----EK-----FRSTNYYPFDENQIHTLGLLG 144
AG+ ++ RNLN SIGI +VN G+ EK Y F+E QI L L
Sbjct: 90 AGLSEFGDRRNLNDTSIGIEIVNLGIKSYDETEKKYGFFIPEDKYIEFEEGQIKKLAFLL 149
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
K+++ ++ IKP+ +LGH+DIAP K+DPG FPW +LY +YGIGAW + + + K
Sbjct: 150 KELIKKYNIKPKDILGHSDIAPTRKIDPGAKFPWERLYKEYGIGAWYDEKD-KIFFMNEK 208
Query: 205 FKPARPYPR-KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
P K D L+ YGY + T++ R V+ +F+ HF++
Sbjct: 209 LYLVTPISEIKKD-------LRKYGYKINNTDEWDEESRRVVYSFQAHFNS 252
>gi|121602034|ref|YP_989189.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis KC583]
gi|421760998|ref|ZP_16197804.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis INS]
gi|120614211|gb|ABM44812.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis KC583]
gi|411173602|gb|EKS43645.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis INS]
Length = 254
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 129/252 (51%), Gaps = 30/252 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L+LHYT +F I A T + S+HY+I + E Y+ G ++ +V +N
Sbjct: 19 VRFLVLHYTAIDFEVSIAALTGAKV----SAHYLIPDPSEKTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIGI +VN G+ + P++ QI + LG +I+
Sbjct: 75 ERAWHAGVSSWAGRTNLNDTSIGIEIVNLA-TGD---PGGFPPYNPIQIDAVKELGANIL 130
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+ H+DIAP K DPGP FPW +LY GIGAW D+ E KF
Sbjct: 131 QRYPDIVPTNVVAHSDIAPTRKSDPGPSFPWKELYR-VGIGAWY--DDDLKEEYQAKFLK 187
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPERIYADITTE 263
P ++ + L+ YGY+ +I N S +IRAF+ HF E + E
Sbjct: 188 NIPSQSEI-----VAQLRKYGYDTSIANTESGYEALIRAFQMHFRQ----ETYDGILDAE 238
Query: 264 DMFWAWALVAKY 275
+ALVAKY
Sbjct: 239 TAAILYALVAKY 250
>gi|410094025|ref|ZP_11290484.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas viridiflava
UASWS0038]
gi|409758573|gb|EKN43858.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas viridiflava
UASWS0038]
Length = 259
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 IQYVVMHYTSASLERSLQLLT----HGEVSSHYLIGDDAS-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWDGRTWLNSSSIGIEIVNPGYT-ETPTGRLWYPYTEAQYQSIKVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
+P++++GH+DIAP KMDPGPLFPW +L D G+G W PDE V +A++ P
Sbjct: 145 EPKHIIGHSDIAPTRKMDPGPLFPWKRLAAD-GLGVW--PDERLVAQRQALMMNNLPT-- 199
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPER 255
G F + L GY T + R V+ AF+ HF PER
Sbjct: 200 ------IGWFQQQLARLGYTTPQTGELDTATREVMAAFQMHF----RPER 239
>gi|429333716|ref|ZP_19214407.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida CSV86]
gi|428761520|gb|EKX83743.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida CSV86]
Length = 261
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 31/240 (12%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P + ++ + V++++LHYT + + T H SSHY+IS+ +
Sbjct: 20 PALRIDHSYVSANQNSRVQFVVLHYTNASLERSLALLT----HGEVSSHYLISDDDK--- 72
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G + Q+V +N R+WHAG+ +W LNS SIGI +VN G + ++P+ E Q
Sbjct: 73 --GTIYQLVDENRRSWHAGVSQWDGRTWLNSSSIGIEIVNPGFT-DTPSGRVWHPYTEAQ 129
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
+ +L LL KDI + I+P+Y++GH+DIAP K+DPGPLFPW +L D G+ W PD
Sbjct: 130 VQSLILLLKDIAKRNDIQPKYIIGHSDIAPQRKLDPGPLFPWKRL-ADEGLAIW--PDAQ 186
Query: 197 TVEAIVRKFKPARP----YPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
V F P Y ++L R +GY + T R VI AF+ F
Sbjct: 187 AVSQQQALFAVNPPNAVWYQQQLAR---------FGYAIEQTGVFDVATRHVIAAFQMRF 237
>gi|404366718|ref|ZP_10972100.1| hypothetical protein FUAG_01910 [Fusobacterium ulcerans ATCC 49185]
gi|404288955|gb|EFS26395.2| hypothetical protein FUAG_01910 [Fusobacterium ulcerans ATCC 49185]
Length = 275
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 128/263 (48%), Gaps = 38/263 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +KY++LHYT N I A T SSHY+I+ K +VP
Sbjct: 36 DSR----IKYIVLHYTATNDEVGIRALTGPNV----SSHYLITSK-----AEDPTYALVP 82
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--------FRSTN-YYPFDENQI 137
N RAWHAG+ ++ N+N SIGI +VN G+ FR + Y FD+ QI
Sbjct: 83 HNERAWHAGVSEFAGRSNINDTSIGIEIVNIGIKAIPGAPKYDGFFRPYDEYVDFDDAQI 142
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L K ++ ++ IKP++++GH+D+AP K+DPGP FPW +LY +Y IGAW +
Sbjct: 143 EKAAALLKVLIKEYNIKPKFIVGHSDVAPLRKIDPGPKFPWERLYKEYNIGAWYDESDKI 202
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQN 252
F + K + L+ YGY + T++ + V+ FK HF N
Sbjct: 203 FFMNQTLFDVTPVHEIK-------DELRKYGYKINTTDEWDEESKRVVYNFKAHF----N 251
Query: 253 PERIYADITTEDMFWAWALVAKY 275
P+ + ++ E AL KY
Sbjct: 252 PKMLSEEMDLESFAILKALNKKY 274
>gi|213971021|ref|ZP_03399142.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. tomato T1]
gi|301385584|ref|ZP_07234002.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tomato
Max13]
gi|302058832|ref|ZP_07250373.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tomato
K40]
gi|302132139|ref|ZP_07258129.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422656372|ref|ZP_16718818.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|213924257|gb|EEB57831.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. tomato T1]
gi|331014875|gb|EGH94931.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 259
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + + ++
Sbjct: 30 NFDNR----VQYVVMHYTSTSMERSLQLLT----HGEVSSHYLIGDDSK-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQIQSI 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + KI P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 TVLLKDIVKRNKIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGTW--PDERLVAQ 188
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R VI AF+ H+
Sbjct: 189 RQAMLATNLPSVSW--------FQQQLARLGYSTPQTGELDTATRQVIAAFQMHY 235
>gi|398380410|ref|ZP_10538528.1| negative regulator of beta-lactamase expression [Rhizobium sp.
AP16]
gi|397721726|gb|EJK82274.1| negative regulator of beta-lactamase expression [Rhizobium sp.
AP16]
Length = 253
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 125/264 (47%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + G ++LHYT A + RA + SSHY +
Sbjct: 10 GASVQPSP------NHGEREGGRKPDMILLHYTGMGTAEGALDWLC-RAESQVSSHYFVF 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG WR + ++NS+SIGI + N G G
Sbjct: 63 ED-------GRVIQLVPEERRAWHAGKSLWRGEADINSLSIGIEIANAGHPG------GL 109
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F + Q+ + L +D ++ I P+ VLGH+D+AP K+DPG FPW +L G+G
Sbjct: 110 PDFPDAQVEAVIELCRDCGQRWAIAPERVLGHSDVAPVRKVDPGEKFPWARLAA-AGVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P +T +K +P +L YGY IT + S ++AF+
Sbjct: 169 WVEPAPITGGRFFQKGDVGQPIE------ALQSMLSLYGYGTEITGEFSTKLEGDVQAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF PER+ AD +T D
Sbjct: 223 RHF----RPERVDGIADFSTIDTL 242
>gi|319406154|emb|CBI79791.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella sp. AR 15-3]
Length = 256
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 26/254 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
V++L++HYT +F + A T + SSHY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTAIDFKESVAALTGTKV----SSHYLVPDPLEKTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAGI W +LN SIGI +V+ + + P++ QI + L +I+
Sbjct: 75 ERAWHAGISSWAGRNDLNDTSIGIEIVSVVTDNDMNGVPIFPPYNPMQIDAIKELALNIL 134
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+GH+DIAP K DPG FPW +LY GIGAW D+ +F
Sbjct: 135 QRYPDITPTNVVGHSDIAPDRKSDPGAAFPWKELYT-VGIGAWY--DDELKNCYQTQFCK 191
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
+ P D+ + LK YGY+ I R++IRAF+ HF N N + I + E
Sbjct: 192 SLP-----DKADIIAKLKQYGYDTAIAKTEDGYRTLIRAFQLHFRQN-NYDGI---LDAE 242
Query: 264 DMFWAWALVAKYGS 277
+ALV KY S
Sbjct: 243 TAAVLYALVDKYFS 256
>gi|386079513|ref|YP_005993038.1| N-acetylmuramoyl-L-alanine amidase YbjR [Pantoea ananatis PA13]
gi|354988694|gb|AER32818.1| N-acetylmuramoyl-L-alanine amidase YbjR [Pantoea ananatis PA13]
Length = 297
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 17/220 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+++L+ HYT + A + T N S+HY+I E + +V ++ RAWH
Sbjct: 59 IRFLVFHYTAADNATSLKLLTGNNV----SAHYLIPESPDNTADKPLIYPLVHEDKRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W NLN S+GI +VN G +YP+DE QI L L + I+ ++ I
Sbjct: 115 AGVSNWNGRVNLNDSSVGIEIVNRGFSENMLGHKTWYPYDEKQIKALVALSRRIIQRYNI 174
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIAP K DPG LFPW +L GIGAW P+ ++ + P P
Sbjct: 175 TPDNVVGHSDIAPLRKQDPGKLFPWKQLAAQ-GIGAW--PEAEKIKKYLNGRLPTAP--- 228
Query: 214 KLDRGIFLELLKAYGYNVT----ITNKRSV--IRAFKTHF 247
++ LLK YGY+ + ++ ++ I+AF+ HF
Sbjct: 229 -VNVHKMQVLLKTYGYDAIPQTGVLDEETIKTIQAFQMHF 267
>gi|239832320|ref|ZP_04680649.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG
3301]
gi|444310515|ref|ZP_21146136.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium M86]
gi|239824587|gb|EEQ96155.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG
3301]
gi|443486077|gb|ELT48858.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium M86]
Length = 268
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 133/263 (50%), Gaps = 34/263 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G ++DP P N RDG +LILHYT A + + S+HY++
Sbjct: 24 GAMLDPSP------NFGPRRDGKMPTFLILHYTGLETAEEAVQVLKSPDMEV-SAHYLVH 76
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+++Q+V + RAWHAG W+ + ++NS SIGI +VN G + +Y
Sbjct: 77 ED-------GRIVQMVSEKARAWHAGQSFWKGETDINSASIGIEIVNPGNL------QDY 123
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF + QI + L +DI + I+P+ VL H+DIAP K DPG FPW +L+ + GI
Sbjct: 124 PPFKDAQIEAVIRLCRDICERQAIRPENVLAHSDIAPSRKTDPGHNFPWKRLH-EAGIAH 182
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFK 244
++ P + + + + +P +L YGY + IT + +VI+AF+
Sbjct: 183 YIEPTPIRGGRFLARGENGQPVE------ALQSMLALYGYGIAITGIFDEDTETVIKAFQ 236
Query: 245 THFSANQNPERIYADITTEDMFW 267
HF QN + + AD++T D +
Sbjct: 237 RHFRP-QNVDGV-ADVSTIDTLY 257
>gi|424885206|ref|ZP_18308817.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|424886270|ref|ZP_18309878.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393175621|gb|EJC75663.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393176968|gb|EJC77009.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2012]
Length = 253
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 127/254 (50%), Gaps = 40/254 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTS----NRAHNLHSSHYVISEKEGKYLPGG 79
NH + DG ++LHYT + TAF + RA + SSHY + E G
Sbjct: 18 NHGERADGRRPDMILLHYT-----GMPTAFGALDWLCRAESQVSSHYFVHEN-------G 65
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+V+Q+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI
Sbjct: 66 EVVQLVPEVRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAA 119
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+ L +D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T
Sbjct: 120 VIELCRDCVKRWSIAPERVLGHSDVAPVRKVDPGEKFPWAELHR-AGIGHWVEPATITGG 178
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS-----VIRAFKTHFSANQNPE 254
++ +P +L YGY+ IT + S + AF+ HF PE
Sbjct: 179 RFFQRGDAGQPVE------ALQSMLSLYGYSTEITGQFSDKTAGDVEAFQRHF----RPE 228
Query: 255 RI--YADITTEDMF 266
R+ AD +T D
Sbjct: 229 RVDGIADFSTIDTL 242
>gi|257125918|ref|YP_003164032.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Leptotrichia buccalis C-1013-b]
gi|257049857|gb|ACV39041.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Leptotrichia buccalis C-1013-b]
Length = 316
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 24/218 (11%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
+++ILHYT N + A T N SSHY++S+++ V +V +N RAWHA
Sbjct: 92 RFIILHYTAVNRDGSLRALTGNDV----SSHYLVSDQKND-----PVFYLVDENKRAWHA 142
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G +W+ +NLN SIGI +VN G V +F PF + QI + +L + ++ +++I
Sbjct: 143 GASEWKTTKNLNDSSIGIEIVNNGDVSGRFE-----PFKDFQIKEVAVLVRHLIDKYEIP 197
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
P +LGH+DIAP K DPGPLFPW +L Y IG W + + + + A +
Sbjct: 198 PTNILGHSDIAPQRKPDPGPLFPWEELNKKYNIGMWYDSSSKS----MYESQYASTWDTI 253
Query: 215 LDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ E K +GY V T + +++I+AF+ HF
Sbjct: 254 PAATVQAEFSK-FGYAVNQTGRWDEQTKNIIKAFQYHF 290
>gi|402566653|ref|YP_006615998.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cepacia GG4]
gi|402247850|gb|AFQ48304.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia cepacia GG4]
Length = 290
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 22/226 (9%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + + S HYV+ + V Q+VP
Sbjct: 42 DSR----IRFLVMHYTESDEAKSLHTLMGDSV----SVHYVVPPQPRIEHGMPVVYQLVP 93
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
++ RAWHAG+ +W+ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 94 ESQRAWHAGVSEWQGTTELNAASIGIENVNRGPLDPQNRT--WQPYPPEQVDALIRLSKD 151
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
IV+++ I P V+GH+DIAP K+DPGPLFPW L L G+GAW PD+ TV A +
Sbjct: 152 IVARYGIPPTRVVGHSDIAPQRKIDPGPLFPWHALAL-AGVGAW--PDDTTVAA---RLG 205
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
P+ R + L+L + YGY+V + V AF+ HF
Sbjct: 206 GRDPHALVDVRELQLKLAR-YGYDVPTDGVFDARAQRVFAAFQMHF 250
>gi|449673888|ref|XP_004208056.1| PREDICTED: N-acetylmuramoyl-L-alanine amidase AmiD-like [Hydra
magnipapillata]
Length = 259
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 130/245 (53%), Gaps = 25/245 (10%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++L++HYT + + + T ++ SSHY++ + GK G + Q V +N+RA+
Sbjct: 35 RFLVIHYTAIDLENSVKILTGDKV----SSHYLVPD--GKLADEGVIYQFVDENLRAFTQ 88
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGV--VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
GI WR NLN I I +VN G + E + ++PF +QI + L KDI+ ++
Sbjct: 89 GISYWRGWTNLNDNGISIEIVNLGYEHINETIK---WFPFSNSQIQLVTNLSKDIIKRYS 145
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
++P+ V+GH+D APG K DPGPLFPW +LY + GIGAW PD+ V + +
Sbjct: 146 LEPKNVIGHSDCAPGRKQDPGPLFPWEQLYKN-GIGAW--PDKNDVLHFQQHYSNTN--- 199
Query: 213 RKLDRGIFLELLKAYGY--NVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWA 270
KL+ I LE L+ YGY N R+ I +F+ HF P + + TE A
Sbjct: 200 LKLEE-IHLE-LQTYGYYINKDAETTRNAIISFQMHFR----PAKYDGIMDTETFAILKA 253
Query: 271 LVAKY 275
L KY
Sbjct: 254 LNKKY 258
>gi|381405125|ref|ZP_09929809.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea sp. Sc1]
gi|380738324|gb|EIB99387.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pantoea sp. Sc1]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK +++HYT +F+ + T S+HY+I + + G + Q+VP+ AWH
Sbjct: 36 VKVIVIHYTAEDFSSSLATLTDREV----SAHYLIPRQPPQRAGKGIIWQLVPEQQLAWH 91
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIHTLGLLGKDIVS 149
AG WR ++N SIGI LVN G +R T + PF Q+ L L +DI
Sbjct: 92 AGPSFWRGATHINDTSIGIELVNRG-----YRRTPTGLEWQPFTVAQMTALEALLRDIAR 146
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
++ I P+ ++GH+DIAP K DPGP FPW +L G+GAW PD V+ + P
Sbjct: 147 RYAIPPENIVGHSDIAPQRKQDPGPCFPWQQL-AQRGLGAW--PDSRRVQFWLAGKAPHA 203
Query: 210 PYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHF 247
P + L LL YGY V + ++ VI AF+ HF
Sbjct: 204 AVPAEQ----VLTLLSRYGYPVSDGMSAREQQKVIAAFQMHF 241
>gi|398939838|ref|ZP_10668892.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM41(2012)]
gi|398163606|gb|EJM51760.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM41(2012)]
Length = 255
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 127/252 (50%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++LI HYT NF+ + A S+HY++ + + YL G +V +V +
Sbjct: 19 VRFLIFHYTAGNFSSSVNALIGPNV----SAHYLVPDITDPSYLKAGYTGQEVFNLVDET 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIG+ +VN + N+ P+ QI + L +I+
Sbjct: 75 KRAWHAGVSTWGNRSNLNDTSIGVEIVNLATFSQGV--FNFPPYQPEQIAAIEELALNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P VLGH+DIA G K DPGP FPW LYL G+GAW DE T + ++++
Sbjct: 133 ERYPDISPTQVLGHSDIAVGRKSDPGPKFPWHALYLK-GVGAWF--DEATRDIYLQQYCE 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPERIYADITTE 263
P + D L+L K YGY+V+ + ++RAF+ HF PE I +
Sbjct: 190 TG-IPARSD---LLKLFKTYGYDVSGASTEQGFTHLVRAFQLHF----RPEMYDGIIDAQ 241
Query: 264 DMFWAWALVAKY 275
ALV KY
Sbjct: 242 TAANLAALVHKY 253
>gi|218672191|ref|ZP_03521860.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli GR56]
Length = 242
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 123/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT + RA + SSHY + E G+VIQ
Sbjct: 7 NHGERADGRRPDMILLHYTGMPTPDGALDWLC-RAESQVSSHYFVHES-------GEVIQ 58
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W+ + ++NS+SIGI + N G G YP + QI + L
Sbjct: 59 LVPEGRRAWHAGKSSWQGESDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 112
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T +
Sbjct: 113 CRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELHR-AGIGHWVEPATITGGRFFQ 171
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PERI
Sbjct: 172 RGDAGQPVE------ALQSMLSLYGYGTEITGQFSEKTAGDVEAFQRHF----RPERIDG 221
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 222 IADFSTIDTL 231
>gi|398944758|ref|ZP_10671427.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM41(2012)]
gi|398157741|gb|EJM46114.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM41(2012)]
Length = 259
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR ++++++HYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----IQFVVVHYTSASLERSLQLLT----HGDVSSHYLIGDNKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI ++ I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IVLLKDISKRYAINPRSIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGIW--PNEQAVTR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F+ P F L GY T + R VI AF+ HF
Sbjct: 189 QQAQFEVQLP-----TISWFQAQLARAGYPTPQTGELDVATRHVIAAFQMHF 235
>gi|15596004|ref|NP_249498.1| AmpDh3 [Pseudomonas aeruginosa PAO1]
gi|116048725|ref|YP_792475.1| hypothetical protein PA14_53820 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893249|ref|YP_002442118.1| AmpDh3 [Pseudomonas aeruginosa LESB58]
gi|355647308|ref|ZP_09054975.1| hypothetical protein HMPREF1030_04061 [Pseudomonas sp. 2_1_26]
gi|418586922|ref|ZP_13150959.1| AmpDh3 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589097|ref|ZP_13153026.1| AmpDh3 [Pseudomonas aeruginosa MPAO1/P2]
gi|421169845|ref|ZP_15627848.1| AmpDh3 [Pseudomonas aeruginosa ATCC 700888]
gi|421176199|ref|ZP_15633867.1| AmpDh3 [Pseudomonas aeruginosa CI27]
gi|421515428|ref|ZP_15962114.1| AmpDh3 [Pseudomonas aeruginosa PAO579]
gi|9946700|gb|AAG04196.1|AE004516_1 AmpDh3 [Pseudomonas aeruginosa PAO1]
gi|115583946|gb|ABJ09961.1| hypothetical protein PA14_53820 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218773477|emb|CAW29289.1| AmpDh3 [Pseudomonas aeruginosa LESB58]
gi|354827999|gb|EHF12131.1| hypothetical protein HMPREF1030_04061 [Pseudomonas sp. 2_1_26]
gi|375042541|gb|EHS35190.1| AmpDh3 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051989|gb|EHS44449.1| AmpDh3 [Pseudomonas aeruginosa MPAO1/P2]
gi|404349156|gb|EJZ75493.1| AmpDh3 [Pseudomonas aeruginosa PAO579]
gi|404525479|gb|EKA35744.1| AmpDh3 [Pseudomonas aeruginosa ATCC 700888]
gi|404531352|gb|EKA41312.1| AmpDh3 [Pseudomonas aeruginosa CI27]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|254245059|ref|ZP_04938381.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|392985711|ref|YP_006484298.1| AmpDh3 [Pseudomonas aeruginosa DK2]
gi|416865564|ref|ZP_11915764.1| AmpDh3 [Pseudomonas aeruginosa 138244]
gi|419752695|ref|ZP_14279101.1| AmpDh3 [Pseudomonas aeruginosa PADK2_CF510]
gi|420136632|ref|ZP_14644668.1| AmpDh3 [Pseudomonas aeruginosa CIG1]
gi|421155027|ref|ZP_15614513.1| AmpDh3 [Pseudomonas aeruginosa ATCC 14886]
gi|421158790|ref|ZP_15617986.1| AmpDh3 [Pseudomonas aeruginosa ATCC 25324]
gi|424939853|ref|ZP_18355616.1| hypothetical protein AmpDh3 [Pseudomonas aeruginosa NCMG1179]
gi|126198437|gb|EAZ62500.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|334834386|gb|EGM13353.1| AmpDh3 [Pseudomonas aeruginosa 138244]
gi|346056299|dbj|GAA16182.1| hypothetical protein AmpDh3 [Pseudomonas aeruginosa NCMG1179]
gi|384400825|gb|EIE47182.1| AmpDh3 [Pseudomonas aeruginosa PADK2_CF510]
gi|392321216|gb|AFM66596.1| AmpDh3 [Pseudomonas aeruginosa DK2]
gi|403250592|gb|EJY64012.1| AmpDh3 [Pseudomonas aeruginosa CIG1]
gi|404521058|gb|EKA31687.1| AmpDh3 [Pseudomonas aeruginosa ATCC 14886]
gi|404549216|gb|EKA58129.1| AmpDh3 [Pseudomonas aeruginosa ATCC 25324]
gi|453044531|gb|EME92254.1| AmpDh3 [Pseudomonas aeruginosa PA21_ST175]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFTSLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|319404301|emb|CBI77894.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella rochalimae ATCC
BAA-1498]
Length = 260
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 131/264 (49%), Gaps = 26/264 (9%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y + G + V++L++HYT NF + T S+HY++ + E Y+ G
Sbjct: 7 NSYRTVKGFNRRVRFLVMHYTAANFKSSVITLTGPSV----SAHYLVPDPSEQTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAGI W NLN +IGI VN + + + PF Q
Sbjct: 63 KDMRIFNLVDENERAWHAGISSWAGRNNLNDTAIGIETVN--LATDNNGKFTFPPFHPKQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIAPG KMDPG FPW KLY D GIGAW D
Sbjct: 121 IDAIKELAFNILQRYPDISPTNVVGHSDIAPGRKMDPGAAFPWKKLY-DSGIGAWY--DA 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQ 251
+ + +F + K + L LK YGY+ + N S +I AF+ HF Q
Sbjct: 178 VQKDFYQEEFTRDPSFFAKAKEEV-LAKLKKYGYDTSGANTESGYKNLIMAFQLHF--RQ 234
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
DI T + +ALV KY
Sbjct: 235 ENYNGLLDIETAAII--YALVEKY 256
>gi|319899284|ref|YP_004159377.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella clarridgeiae
73]
gi|319403248|emb|CBI76807.1| N-acetylmuramoyl-L-alanine amidase amiD precursor [Bartonella
clarridgeiae 73]
Length = 256
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 24/224 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V +L++HYT +F + A T + SSHY++ + E Y+ G ++ +V +N
Sbjct: 19 VFFLVMHYTAIDFKESVAALTGVKV----SSHYLVPDPSEKTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W + NLN SIGI +V+ +V + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSSWAKRNNLNDTSIGIEIVS--IVTNNNGIFTFPPYNPMQIDAVKELALNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+GH+DIAPG K DPG FPW +LY GIGAW D+ + +F
Sbjct: 133 QRYPDITPTNVVGHSDIAPGRKSDPGAAFPWKELYTA-GIGAWY--DDELKDCYQSQF-- 187
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHF 247
+ P K D L+ K YGY+ +I S +IRAF+ HF
Sbjct: 188 CKSLPAKED---ILDKFKQYGYDTSIAETESGYKVLIRAFQLHF 228
>gi|398918337|ref|ZP_10658424.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM49]
gi|398171392|gb|EJM59295.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM49]
Length = 256
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 31/267 (11%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S ++ V++LI HYT NF+ ++A T S+HY+I + + YL
Sbjct: 5 NYNQYRSIRSVNSRVRFLIFHYTAANFSSSVSALTGPNV----SAHYLIPDITDPGYLKA 60
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G + +V + RAWHAG+ +W NLN SIGI +VN + + + P+
Sbjct: 61 GYTGQETFNLVNETHRAWHAGVSQWGNRSNLNDTSIGIEIVN--LATDNKGEFTFPPYHP 118
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + L +I+ ++ I P VLGH+D++ G K DPGP+FPW LYL G+GAW
Sbjct: 119 EQIAAIEQLALNILKRYPDITPTQVLGHSDVSIGRKSDPGPMFPWQALYLK-GVGAWF-- 175
Query: 194 DEMTVEAIVRKFKPAR-PYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
D T + + ++ + P R L L K+YGY+V+ + + ++RAF+ HF
Sbjct: 176 DATTRDEYLCQYNTSGVPV-----RSELLGLFKSYGYDVSGASTEGGFQQLVRAFQMHF- 229
Query: 249 ANQNPERIYADITTEDMFWAWALVAKY 275
PE+ + + ALV KY
Sbjct: 230 ---RPEKFDGKMDAQTAANLKALVVKY 253
>gi|293395288|ref|ZP_06639573.1| N-acetylmuramoyl-L-alanine amidase [Serratia odorifera DSM 4582]
gi|291422245|gb|EFE95489.1| N-acetylmuramoyl-L-alanine amidase [Serratia odorifera DSM 4582]
Length = 255
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 23/228 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG----KVIQIVPDN 88
V++L+LHYT NFA IT+ T S+HY++ + + + Y G ++ +V +N
Sbjct: 19 VRFLVLHYTAQNFADSITSLTGPAV----SAHYLVPDPDDQSYREAGYGDLRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG +W NLN +IGI +VN + + ++ PF+ QI + L +I+
Sbjct: 75 ERAWHAGASQWAGRTNLNDTAIGIEIVN--LASGDGENIHFPPFNSQQIDAVIQLTSNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+ H+DIAPG K DPGP FPW +LY G+GAW + V+ ++
Sbjct: 133 QRYPDISPVNVVAHSDIAPGRKSDPGPQFPWLQLY-QAGVGAWY---DAAVQHRHQQHYC 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
P +R L L YGY+ + + R ++RAF+ HF Q
Sbjct: 189 RHGLP---ERSALLALFARYGYDTSAADSDEGYRQLVRAFQLHFRQRQ 233
>gi|421182222|ref|ZP_15639704.1| AmpDh3 [Pseudomonas aeruginosa E2]
gi|404542382|gb|EKA51702.1| AmpDh3 [Pseudomonas aeruginosa E2]
Length = 255
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPTPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|422652609|ref|ZP_16715390.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330965673|gb|EGH65933.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 259
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + + ++
Sbjct: 30 NFDNR----VQYVVMHYTSASMERSLQLLT----HGEVSSHYLIGDDSQ-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQIQSI 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + +I P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 TVLLKDIVKRNRIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGTW--PDERLVAQ 188
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R VI AF+ H+
Sbjct: 189 RQAMLATNLPSVSW--------FQQQLARLGYSTPQTGELDTATRQVIAAFQMHY 235
>gi|296390840|ref|ZP_06880315.1| AmpDh3 [Pseudomonas aeruginosa PAb1]
gi|416875074|ref|ZP_11918482.1| AmpDh3 [Pseudomonas aeruginosa 152504]
gi|334842414|gb|EGM21022.1| AmpDh3 [Pseudomonas aeruginosa 152504]
Length = 255
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEGRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|28867569|ref|NP_790188.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28850804|gb|AAO53883.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 259
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + + ++
Sbjct: 30 NFDNR----VQYVVMHYTSTSMERSLQLLT----HGEVSSHYLIGDDSK-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQIQSI 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + +I P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 TVLLKDIVKRNRIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGTW--PDERLVAQ 188
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R VI AF+ H+
Sbjct: 189 RQAMLATNLPSVSW--------FQQQLARLGYSTPQTGELDTATRQVIAAFQMHY 235
>gi|417102851|ref|ZP_11960879.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli CNPAF512]
gi|327191484|gb|EGE58502.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli CNPAF512]
Length = 253
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 127/264 (48%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + DG ++LHYT + RA + SSHY +
Sbjct: 10 GACVRPSP------NHGERADGRRPDMILLHYTGMPTPDGALDWLC-RAESQVSSHYFVH 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG +W + ++NS+SIGI + N G G
Sbjct: 63 EN-------GEVIQLVPEGRRAWHAGKSRWHGESDINSLSIGIEIANAGHPG----GLPD 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
YP + QI + L +D V ++ I P+ VLGH+D+AP K+DPG FPW L+ G+G
Sbjct: 112 YP--KEQIAAVIELCRDCVKRWSIAPERVLGHSDVAPVRKVDPGEKFPWAALHR-AGVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P ++T ++ +P +L YGY IT + S + AF+
Sbjct: 169 WVEPAKITGGRFFQRGDAGQPVE------ALQSMLSLYGYGTEITGEFSERTAGDVEAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF PER+ AD +T D
Sbjct: 223 RHF----RPERVDGIADFSTIDTL 242
>gi|422296351|ref|ZP_16384022.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas avellanae BPIC 631]
gi|407992502|gb|EKG34122.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas avellanae BPIC 631]
Length = 259
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + + ++
Sbjct: 30 NFDNR----VQYVVMHYTSASMERSLQLLT----HGEVSSHYLIGDDSQ-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQIQSI 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + +I P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 TVLLKDIVKRNRIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGTW--PDERLVAQ 188
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R VI AF+ H+
Sbjct: 189 RQAMLATNLPSVSW--------FQQQLARLGYSTPQTGELDTATRQVIAAFQMHY 235
>gi|241205570|ref|YP_002976666.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240859460|gb|ACS57127.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 253
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 124/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + S RA + SSHY + E G+V+Q
Sbjct: 18 NHGERADGRRPDMILLHYTGMPTADGALDWLS-RAESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEMRRAWHAGKSNWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T +
Sbjct: 124 CRDCVKRWSIVPERVLGHSDVAPIRKVDPGEKFPWAELHR-AGIGHWVEPATITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PERI
Sbjct: 183 RGDTGQPVE------ALQSMLSLYGYGTEITGEFSEKTAGDVEAFQRHF----RPERIDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|451987706|ref|ZP_21935859.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 18A]
gi|451754696|emb|CCQ88382.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 18A]
Length = 255
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYGGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|422588300|ref|ZP_16662968.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330874569|gb|EGH08718.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 259
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + + ++
Sbjct: 30 NFDNR----VQYVVMHYTSASMERSLQLLT----HGEVSSHYLIGDDSQ-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQIQSI 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + +I P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 TVLLKDIVKRNRIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGTW--PDERLVAQ 188
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R VI AF+ H+
Sbjct: 189 RQAMLATNLPSVSW--------FQQQLARLGYSTPQTGELDTATRQVIAAFQMHY 235
>gi|386060291|ref|YP_005976813.1| AmpDh3 [Pseudomonas aeruginosa M18]
gi|347306597|gb|AEO76711.1| AmpDh3 [Pseudomonas aeruginosa M18]
Length = 255
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + G+GAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGVGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|398896950|ref|ZP_10647882.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM55]
gi|398177634|gb|EJM65307.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM55]
Length = 256
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 134/270 (49%), Gaps = 37/270 (13%)
Query: 22 NRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPG 78
N N Y S ++ +++LI HYT NF I T S+HY++ + + YL
Sbjct: 5 NYNQYRSIRSVNGRIRFLIFHYTAGNFTSSINVLTGPNV----SAHYLVPDITDPSYLKA 60
Query: 79 G----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G +V +V + RAWHAG+ +W NLN SIGI +VN + + + P+
Sbjct: 61 GYTGQEVFNLVDETYRAWHAGVSQWGNRSNLNDTSIGIEIVN--LATDNKGEFTFPPYHP 118
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + L +I+ ++ I P VLGH+D++ G K DPGP+FPW LYL G+GAW
Sbjct: 119 EQIAAIEQLALNILKRYPDITPTQVLGHSDVSIGRKSDPGPMFPWQALYLK-GVGAWF-- 175
Query: 194 DEMTVEAIVRKFK----PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKT 245
DE T + + ++ PA R L L K+YGY+V+ + + ++RAF+
Sbjct: 176 DETTRDEYLCQYNTSGIPA--------RSELLGLFKSYGYDVSGASTEEGFQRLVRAFQM 227
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKY 275
HF PE + + ALV KY
Sbjct: 228 HF----RPENFDGKMDAQTAANLKALVIKY 253
>gi|313105632|ref|ZP_07791897.1| AmpDh3 [Pseudomonas aeruginosa 39016]
gi|386064482|ref|YP_005979786.1| hypothetical protein NCGM2_1536 [Pseudomonas aeruginosa NCGM2.S1]
gi|310878399|gb|EFQ36993.1| AmpDh3 [Pseudomonas aeruginosa 39016]
gi|348033041|dbj|BAK88401.1| hypothetical protein NCGM2_1536 [Pseudomonas aeruginosa NCGM2.S1]
Length = 255
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYVLPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|373495586|ref|ZP_09586142.1| hypothetical protein HMPREF0402_00015 [Fusobacterium sp. 12_1B]
gi|371967622|gb|EHO85091.1| hypothetical protein HMPREF0402_00015 [Fusobacterium sp. 12_1B]
Length = 275
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 128/263 (48%), Gaps = 38/263 (14%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +KY++LHYT N I A T SSHY+I+ K +VP
Sbjct: 36 DSR----IKYIVLHYTATNDEVGIRALTGPNV----SSHYLITFK-----AEDPTYALVP 82
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK--------FRSTN-YYPFDENQI 137
N RAWHAG+ ++ N+N SIGI +VN G+ FR + Y FD+ QI
Sbjct: 83 HNERAWHAGVSEFAGRSNINDTSIGIEIVNIGIKAIPGAPKYDGFFRPYDEYVDFDDAQI 142
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L K ++ ++ IKP++++GH+D+AP K+DPGP FPW +LY +Y IGAW +
Sbjct: 143 EKAAALLKVLIKEYNIKPKFIVGHSDVAPLRKIDPGPKFPWERLYKEYNIGAWYDESDKI 202
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQN 252
F + K + L+ YGY + T++ + V+ FK HF N
Sbjct: 203 FFMNQTLFDVTPVHEIK-------DELRKYGYKINTTDEWDEESKRVVYNFKAHF----N 251
Query: 253 PERIYADITTEDMFWAWALVAKY 275
P+ + ++ E AL KY
Sbjct: 252 PKMLSEEMDLESFAILKALNKKY 274
>gi|398963736|ref|ZP_10679803.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM30]
gi|398149257|gb|EJM37910.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM30]
Length = 259
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++I+HYT + A + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVIVHYTSASLARSLQLLT----HGEVSSHYLIGDDKS-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F+ T ++P+ E QI +L
Sbjct: 77 MDENQRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWFPYSEAQIQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IVLLKDISQRQGISPRHIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGVW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F E L GY+ T + R V+ AF+ HF
Sbjct: 189 QQVQFNAELP-----SISWFQEQLARVGYDTPQTGELDVATRHVLAAFQMHF 235
>gi|107100268|ref|ZP_01364186.1| hypothetical protein PaerPA_01001292 [Pseudomonas aeruginosa PACS2]
Length = 255
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G + +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRTFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFASLLRAFQMHF----RPENYDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|410664114|ref|YP_006916485.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
gi|389620907|gb|AFK93841.1| N-acetylmuramoyl-L-alanine amidase AmiD1 [Simiduia agarivorans SA1
= DSM 21679]
gi|409026471|gb|AFU98755.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
Length = 303
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
V++L++HYT +F + A T ++N SSHY+I E++ P KV Q+V ++ RA
Sbjct: 38 VRFLVMHYTAIDFDRSLRALTLP-SNNPVSSHYLIPERDDPSYPHDELKVFQLVDEHRRA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYP-FDENQIHTLGLLGKD 146
WHAG GKW +N SIGI +VN T ++P FD QI + L KD
Sbjct: 97 WHAGPGKWEDREQVNDQSIGIEIVNRAHCHPPMEQTKAGICFFPEFDREQIELVIQLSKD 156
Query: 147 IVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
I+++ I P V+GH DI P K DPGP FPW +L G+GAW D+ TV +
Sbjct: 157 ILARNPDITPTRVVGHGDILPQFKNDPGPRFPWQQLAA-AGVGAWY--DDATVIRYFDQL 213
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNV-----TITNKRSVIRAFKTHFSA 249
A F+ LL AYGY + T T+ + AF+ HF A
Sbjct: 214 SAATETDPADSEREFVGLLAAYGYGIDPKDYTETDLSLYVSAFQYHFRA 262
>gi|300723740|ref|YP_003713047.1| amidase [Xenorhabdus nematophila ATCC 19061]
gi|297630264|emb|CBJ90915.1| putative amidase [Xenorhabdus nematophila ATCC 19061]
Length = 256
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 114/223 (51%), Gaps = 24/223 (10%)
Query: 35 KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEG-KYLPGG----KVIQIVPDNM 89
++L++HYT NF I A T L S+HY++ E Y G + +V +
Sbjct: 20 RFLVMHYTALNFEKAIQALTGE----LVSAHYLVPNPEDPTYQAAGFNKIHIFNLVDEIE 75
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAGI W LN SIGI +VN E + P++ QI + L +I+
Sbjct: 76 RAWHAGISSWAGREGLNDTSIGIEIVNEA--SEDCGIITFPPYNPEQIEAIKELAINILQ 133
Query: 150 QF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
++ I P +V+GH+DIA K DPGP FPW LY D GIGAW DE T + +++F +
Sbjct: 134 RYPDITPTHVVGHSDIAWQRKTDPGPSFPWKALY-DAGIGAWY--DEETKQKYIKQFDHS 190
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHF 247
P DR L+ K YGY ++ K +IRAF+ HF
Sbjct: 191 LP-----DRTEILKKFKRYGYGISEAEKDEYFPLLIRAFQMHF 228
>gi|22125738|ref|NP_669161.1| regulator [Yersinia pestis KIM10+]
gi|45441621|ref|NP_993160.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar Microtus
str. 91001]
gi|108807834|ref|YP_651750.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Antiqua]
gi|108812110|ref|YP_647877.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Nepal516]
gi|145599047|ref|YP_001163123.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Pestoides F]
gi|149366359|ref|ZP_01888393.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
CA88-4125]
gi|162420854|ref|YP_001607852.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Angola]
gi|165925453|ref|ZP_02221285.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938487|ref|ZP_02227044.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008262|ref|ZP_02229160.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166210976|ref|ZP_02237011.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167401682|ref|ZP_02307173.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167422638|ref|ZP_02314391.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167426323|ref|ZP_02318076.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167468732|ref|ZP_02333436.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis FV-1]
gi|218928813|ref|YP_002346688.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis CO92]
gi|229841676|ref|ZP_04461834.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843793|ref|ZP_04463936.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229894535|ref|ZP_04509717.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Pestoides A]
gi|229902429|ref|ZP_04517548.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Nepal516]
gi|270490390|ref|ZP_06207464.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis KIM D27]
gi|294504128|ref|YP_003568190.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Z176003]
gi|384122648|ref|YP_005505268.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis D106004]
gi|384126514|ref|YP_005509128.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis D182038]
gi|384140431|ref|YP_005523133.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis A1122]
gi|384414324|ref|YP_005623686.1| putative N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420546449|ref|ZP_15044435.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-01]
gi|420551772|ref|ZP_15049196.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-02]
gi|420557327|ref|ZP_15054088.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-03]
gi|420562866|ref|ZP_15058970.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-04]
gi|420567872|ref|ZP_15063508.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-05]
gi|420573570|ref|ZP_15068675.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|420578838|ref|ZP_15073451.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-07]
gi|420584213|ref|ZP_15078333.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-08]
gi|420589377|ref|ZP_15082981.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-09]
gi|420594691|ref|ZP_15087764.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-10]
gi|420600380|ref|ZP_15092846.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|420605839|ref|ZP_15097740.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|420611195|ref|ZP_15102577.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-13]
gi|420616524|ref|ZP_15107276.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-14]
gi|420621897|ref|ZP_15112040.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-15]
gi|420626944|ref|ZP_15116616.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|420632147|ref|ZP_15121307.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|420637257|ref|ZP_15125888.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|420642800|ref|ZP_15130912.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-29]
gi|420647995|ref|ZP_15135646.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-32]
gi|420653647|ref|ZP_15140721.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|420657388|ref|ZP_15144126.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-36]
gi|420664453|ref|ZP_15150415.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-42]
gi|420669395|ref|ZP_15154900.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-45]
gi|420674730|ref|ZP_15159757.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-46]
gi|420680286|ref|ZP_15164785.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|420685563|ref|ZP_15169506.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-48]
gi|420690743|ref|ZP_15174087.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-52]
gi|420696536|ref|ZP_15179156.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-53]
gi|420702045|ref|ZP_15183777.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-54]
gi|420707882|ref|ZP_15188636.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-55]
gi|420713236|ref|ZP_15193431.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-56]
gi|420718659|ref|ZP_15198168.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-58]
gi|420724224|ref|ZP_15202977.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|420729827|ref|ZP_15207989.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-60]
gi|420734874|ref|ZP_15212553.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-61]
gi|420740341|ref|ZP_15217475.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|420745816|ref|ZP_15222227.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-64]
gi|420751484|ref|ZP_15227139.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-65]
gi|420756898|ref|ZP_15231735.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-66]
gi|420762615|ref|ZP_15236492.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-71]
gi|420767880|ref|ZP_15241240.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-72]
gi|420772852|ref|ZP_15245711.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-76]
gi|420778290|ref|ZP_15250546.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-88]
gi|420783841|ref|ZP_15255408.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|420789121|ref|ZP_15260090.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-90]
gi|420794602|ref|ZP_15265031.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|420798005|ref|ZP_15268114.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-92]
gi|420805061|ref|ZP_15274448.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|420810348|ref|ZP_15279222.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-94]
gi|420816018|ref|ZP_15284317.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|420821211|ref|ZP_15289004.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-96]
gi|420826300|ref|ZP_15293561.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|420832066|ref|ZP_15298772.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-99]
gi|420836893|ref|ZP_15303129.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-100]
gi|420842048|ref|ZP_15307800.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-101]
gi|420847691|ref|ZP_15312886.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|420853147|ref|ZP_15317639.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-103]
gi|420858617|ref|ZP_15322336.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-113]
gi|421763149|ref|ZP_16199945.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis INS]
gi|21958658|gb|AAM85412.1|AE013787_9 putative regulator [Yersinia pestis KIM10+]
gi|45436482|gb|AAS62037.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Microtus str. 91001]
gi|108775758|gb|ABG18277.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Nepal516]
gi|108779747|gb|ABG13805.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Antiqua]
gi|115347424|emb|CAL20327.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis CO92]
gi|145210743|gb|ABP40150.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis Pestoides F]
gi|149290733|gb|EDM40808.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
CA88-4125]
gi|162353669|gb|ABX87617.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
Angola]
gi|165913602|gb|EDR32222.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. IP275]
gi|165922562|gb|EDR39713.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992644|gb|EDR44945.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166208156|gb|EDR52636.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166958485|gb|EDR55506.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167048787|gb|EDR60195.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167054678|gb|EDR64482.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229680475|gb|EEO76572.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Nepal516]
gi|229689401|gb|EEO81464.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694139|gb|EEO84187.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229703554|gb|EEO90571.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Pestoides A]
gi|262362244|gb|ACY58965.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
D106004]
gi|262366178|gb|ACY62735.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
D182038]
gi|270338894|gb|EFA49671.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis KIM D27]
gi|294354587|gb|ADE64928.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis
Z176003]
gi|320014828|gb|ADV98399.1| putative N-acetylmuramoyl-L-alanine amidase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342855560|gb|AEL74113.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis A1122]
gi|391427750|gb|EIQ89805.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-01]
gi|391429231|gb|EIQ91108.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-02]
gi|391430605|gb|EIQ92304.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-03]
gi|391443235|gb|EIR03571.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-04]
gi|391444645|gb|EIR04846.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-05]
gi|391447556|gb|EIR07456.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-06]
gi|391460088|gb|EIR18817.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-07]
gi|391461178|gb|EIR19807.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-08]
gi|391463060|gb|EIR21500.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-09]
gi|391476193|gb|EIR33334.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-10]
gi|391477913|gb|EIR34888.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-11]
gi|391478100|gb|EIR35057.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-12]
gi|391492198|gb|EIR47689.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-13]
gi|391493084|gb|EIR48468.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-15]
gi|391495325|gb|EIR50433.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-14]
gi|391507953|gb|EIR61738.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-16]
gi|391508195|gb|EIR61960.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-19]
gi|391513009|gb|EIR66275.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-25]
gi|391523418|gb|EIR75731.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-29]
gi|391526103|gb|EIR78181.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-34]
gi|391526957|gb|EIR78929.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-32]
gi|391541733|gb|EIR92255.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-42]
gi|391543035|gb|EIR93409.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-45]
gi|391545429|gb|EIR95520.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-36]
gi|391556884|gb|EIS05931.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-46]
gi|391557325|gb|EIS06331.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-47]
gi|391558554|gb|EIS07425.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-48]
gi|391572187|gb|EIS19447.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-52]
gi|391572703|gb|EIS19896.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-53]
gi|391582063|gb|EIS27873.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-54]
gi|391584685|gb|EIS30184.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-55]
gi|391587923|gb|EIS33028.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-56]
gi|391600880|gb|EIS44358.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-58]
gi|391601374|gb|EIS44802.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-60]
gi|391603085|gb|EIS46308.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-59]
gi|391615902|gb|EIS57625.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-61]
gi|391616640|gb|EIS58277.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-63]
gi|391622278|gb|EIS63220.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-64]
gi|391627877|gb|EIS68037.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-65]
gi|391639029|gb|EIS77769.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-71]
gi|391639169|gb|EIS77892.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-66]
gi|391641320|gb|EIS79757.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-72]
gi|391651093|gb|EIS88313.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-76]
gi|391656313|gb|EIS92964.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-88]
gi|391660816|gb|EIS96930.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-89]
gi|391664365|gb|EIT00106.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-90]
gi|391671243|gb|EIT06208.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-91]
gi|391681969|gb|EIT15885.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-93]
gi|391684227|gb|EIT17928.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-94]
gi|391688467|gb|EIT21676.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-92]
gi|391695813|gb|EIT28357.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-95]
gi|391699188|gb|EIT31403.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-96]
gi|391700569|gb|EIT32654.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-98]
gi|391709740|gb|EIT40889.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-99]
gi|391716632|gb|EIT47073.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-100]
gi|391717351|gb|EIT47727.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-101]
gi|391728205|gb|EIT57341.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-102]
gi|391730894|gb|EIT59661.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-103]
gi|391735568|gb|EIT63694.1| N-acetylmuramoyl-L-alanine amidase family protein [Yersinia pestis
PY-113]
gi|411176596|gb|EKS46614.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pestis INS]
Length = 254
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 24/224 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT +NF I A T S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTAFNFKDSIDALTGPSV----SAHYLVPDPTEQTYIDAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN +IGI VN + + + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSYWDGRNNLNDTAIGIETVNLATDNDGVFT--FPPYNVTQIAAIKALASNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+F I P V+GH+DIAPG K DPG FPW LY D GIGAW D+ T + + +F
Sbjct: 133 YRFPDITPVNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWY--DDETKQRYLDQFLC 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHF 247
+ P + + LK YGY+ V+ +IRAF+ HF
Sbjct: 190 SLP-----SKNDIISKLKRYGYDTSGAVSEVGYNQLIRAFQLHF 228
>gi|325273995|ref|ZP_08140154.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. TJI-51]
gi|324100884|gb|EGB98571.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. TJI-51]
Length = 262
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H SSHY+I + V
Sbjct: 27 DRSHPSANQDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V ++ RAWHAG +W+ LNS SIGI +VN G + +YP+ E QI L
Sbjct: 77 YQLVDESRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGF-ADTPNGRVWYPYSEAQIQALI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRL-ADAGLGVW--PDANAVAQQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 193 QAYFNVNPP-----SVGWYQQELARFGYQIEQTGVLDVATRHVIAAFQMRF 238
>gi|209694359|ref|YP_002262287.1| N-acetylmuramoyl-L-alanine amidase [Aliivibrio salmonicida LFI1238]
gi|208008310|emb|CAQ78462.1| N-acetylmuramoyl-L-alanine amidase [Aliivibrio salmonicida LFI1238]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 121/248 (48%), Gaps = 23/248 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
V++L++HYT NF+ I A T A S+HY++ + Y G ++ +V +N
Sbjct: 19 VRFLVMHYTAINFSASINALTGKEA--TVSAHYLVPNPLDITYQNAGFGDMRIFNLVDEN 76
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W LN SIGI +VN + + P+ QI L L K+I+
Sbjct: 77 ERAWHAGVSSWAGRNGLNDSSIGIEIVNEA--SDDKGVFTFPPYSPTQIQALISLSKNIL 134
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ + P V+GH+DIA G K+DPGP FPW LY D G+GAW DE + K
Sbjct: 135 QRYPDLSPTNVVGHSDIAVGRKVDPGPAFPWKALY-DEGVGAWY--DEDKKQKYTTKLST 191
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
P D+ L K YGY V ++RAF+ HF P R E +
Sbjct: 192 GLP-----DKKDILAAFKKYGYAVD-GEYSLLVRAFQLHF----RPRRTTGVADLETLSI 241
Query: 268 AWALVAKY 275
+ALV KY
Sbjct: 242 LFALVEKY 249
>gi|209963956|ref|YP_002296871.1| N-acetylmuramoyl-L-alanine amidase [Rhodospirillum centenum SW]
gi|209957422|gb|ACI98058.1| N-acetylmuramoyl-L-alanine amidase [Rhodospirillum centenum SW]
Length = 254
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 96/170 (56%), Gaps = 15/170 (8%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R G ++ L+LHYT A + A + S+HYVI E G + +
Sbjct: 13 NHGPRRPGAAIDMLVLHYTGMRTAEEALERLCDPAAEV-SAHYVIDED-------GTLYR 64
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG+ WR +R++NS SIGI LVN G + Y PF E Q+ TL L
Sbjct: 65 LVREDRRAWHAGLSFWRGERDVNSRSIGIELVNPG------HAFGYRPFPEAQMATLESL 118
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
D+V+ ++I P +VLGH+D+AP K DPG LF W +L GIGAW P
Sbjct: 119 AADLVAHYRIPPLHVLGHSDVAPARKEDPGELFDWPRLA-RAGIGAWPEP 167
>gi|424918892|ref|ZP_18342256.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|392855068|gb|EJB07589.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM597]
Length = 253
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 124/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + RA + SSHY + E G+VIQ
Sbjct: 18 NHGERADGRRPDMILLHYTGMPTALGALDWLC-RAESQVSSHYFVHEN-------GEVIQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEVRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T +
Sbjct: 124 CRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELH-RAGIGHWVEPATITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY+ IT + S + AF+ HF PER+
Sbjct: 183 QGDAGQPVE------ALQSMLSLYGYSTEITGQFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|226326506|ref|ZP_03802024.1| hypothetical protein PROPEN_00355 [Proteus penneri ATCC 35198]
gi|225205105|gb|EEG87459.1| N-acetylmuramoyl-L-alanine amidase [Proteus penneri ATCC 35198]
Length = 213
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VKYLI+HYT N A + T SSHY+I K V+ +V +N RAWH
Sbjct: 47 VKYLIMHYTAANDAVSLKTLTGGTV----SSHYLIPTKPKFINNKPIVLSLVNENKRAWH 102
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ +W LN SIGI + N G E ++ + Q+ T+ L+ KDI+ ++ I
Sbjct: 103 AGLSQWGNSAGLNDGSIGIEITNLGYKDEGILRY-WFSYTPEQVLTITLMMKDIIQRYGI 161
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+PQ VLGH+DIAP K+DPGPLFPW +L GIGAW PDE TV
Sbjct: 162 EPQNVLGHSDIAPQRKVDPGPLFPWAEL-AKQGIGAW--PDEETV 203
>gi|398891451|ref|ZP_10644827.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM55]
gi|398187132|gb|EJM74486.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM55]
Length = 259
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 122/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR V++++LHYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----VQFVVLHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWNGRTWLNSSSIGIEIVNPG-----FKDTPTGRVWYPYTEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + IKP ++GH+DIAP K+DPGPLFPW +L + G+G W P+E +V
Sbjct: 132 IVLLKDISKRHGIKPHEIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGIW--PNEQSVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P F L GY T + R VI AF+ HF
Sbjct: 189 QQMLFAEQLP-----SISWFQAQLARLGYASPQTGELDVATRHVIAAFQMHF 235
>gi|209550187|ref|YP_002282104.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535943|gb|ACI55878.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 253
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 123/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + RA + SSHY + E G+V+Q
Sbjct: 18 NHGERADGRRPDMILLHYTGMPTALGALDWLC-RAESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEVRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPEYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T +
Sbjct: 124 CRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELH-RAGIGHWVEPATITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PER+
Sbjct: 183 QGDAGQPVE------ALQSMLSLYGYGTEITGQFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|167031166|ref|YP_001666397.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida GB-1]
gi|166857654|gb|ABY96061.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida GB-1]
Length = 262
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 119/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H SSHY+I + V
Sbjct: 27 DRSHPSANQDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E Q+ +L
Sbjct: 77 YQLVDENRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQVQSLI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGIW--PDANAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY V T R VI AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYQVEQTGVLDVATRHVIAAFQMRF 238
>gi|395784808|ref|ZP_10464626.1| hypothetical protein ME3_01282 [Bartonella melophagi K-2C]
gi|395421833|gb|EJF88065.1| hypothetical protein ME3_01282 [Bartonella melophagi K-2C]
Length = 260
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 127/252 (50%), Gaps = 26/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF I T L S+HY++ + E YL G ++ +V +N
Sbjct: 19 VRFLVIHYTAVNFETSIALLTGP----LVSAHYLVPDPSEKTYLEAGFKDIRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIGI +VN E F + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSSWSEHNNLNDTSIGIEIVNLATTEEVF---TFPPYNPTQIDAIKELALNIL 131
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+GH+DIA G K DPG FPW +LY + GIGAW DE+ + +K
Sbjct: 132 QRYPDITPTNVVGHSDIAIGRKNDPGAAFPWKQLY-EAGIGAWYD-DEL--KNCYQKEFC 187
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPERIYADITTE 263
K + + ++ LK YGY+ + + +IRAF+ HF E + E
Sbjct: 188 NYTCLEKAKKQVVVK-LKQYGYDTSTAKTKCGYKNLIRAFQLHFRQ----ENYNGILDAE 242
Query: 264 DMFWAWALVAKY 275
+ALV KY
Sbjct: 243 TTAIIYALVDKY 254
>gi|421171492|ref|ZP_15629352.1| AmpDh2 [Pseudomonas aeruginosa ATCC 700888]
gi|404520063|gb|EKA30766.1| AmpDh2 [Pseudomonas aeruginosa ATCC 700888]
Length = 259
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 121/235 (51%), Gaps = 31/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N ++ + V+++ILHYT + H + T H S+HY+I + E V
Sbjct: 24 NTDYTSANQDSRVQFIILHYTSTDLPHSLGILT----HGGVSAHYLIGDDEP-----ATV 74
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
++V +N RAWHAG+ +W+ LN+ SIGI +VN G +R T +YPF E QI
Sbjct: 75 YRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQG-----YRDTPQGRVWYPFSEAQI 129
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L KDI + I P ++GH+DIAPG K+DPGPLFPW +L D G+ W P E+
Sbjct: 130 QALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLA-DAGLVPWPKPGEL- 187
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
R+ A + D F + L +GY V T + R VI AF+ +
Sbjct: 188 ----ARRL--AELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKY 236
>gi|319405743|emb|CBI79366.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella sp. AR 15-3]
Length = 260
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 131/269 (48%), Gaps = 36/269 (13%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y + G + V++L++HYT NF + T S+HY++ + E Y+ G
Sbjct: 7 NSYRTVQGFNRRVRFLVMHYTAANFKSSVATLTGPSV----SAHYLVPDPSEQTYMDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAG+ W NLN SIGI VN + + + PF Q
Sbjct: 63 KDVRIFNLVDENERAWHAGVSSWAGRNNLNDTSIGIETVN--LATDNNGKFTFPPFHPKQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIA G K+DPG FPW KLY D GIGAW ++
Sbjct: 121 IDAIKELTFNILQRYPNISPTNVVGHSDIALGRKIDPGAAFPWKKLY-DAGIGAWYDEEQ 179
Query: 196 MTVEAIVRKFKPARPYPRKLDRGI-----FLELLKAYGYNVTITNKRS----VIRAFKTH 246
K+ + + + L I + LK YGY+ + N S +I AF+ H
Sbjct: 180 --------KYAYQKEFAKNLSSFIKAKTEVIAKLKKYGYDTSTANTESGYKNLIIAFQLH 231
Query: 247 FSANQNPERIYADITTEDMFWAWALVAKY 275
F P+ + TE +ALV KY
Sbjct: 232 F----RPKNYDGILDTETAAIIYALVEKY 256
>gi|90418209|ref|ZP_01226121.1| putative N-acetylmuramoyl-L-alanine amidase [Aurantimonas
manganoxydans SI85-9A1]
gi|90337881|gb|EAS51532.1| putative N-acetylmuramoyl-L-alanine amidase [Aurantimonas
manganoxydans SI85-9A1]
Length = 262
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 114/234 (48%), Gaps = 36/234 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + RDG+ LILHYT + + S HY++ E G+V+Q
Sbjct: 16 NHTERRDGLRPDMLILHYTGMGTGEAAMRWLCTPESEV-SCHYLVHED-------GRVVQ 67
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGL 142
+VP+ RAWHAG G WR ++NS SIGI +VN G N YP F QI +
Sbjct: 68 LVPEERRAWHAGAGSWRGRDDINSRSIGIEIVNVG-------HGNGYPDFPPAQIDAVTR 120
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L D V+++ I+P++VL H+D+AP K DPG FPW +L+ GIG + P A +
Sbjct: 121 LCADCVARWPIRPEFVLAHSDVAPARKSDPGEKFPWLQLF-SAGIGHAVDP------APL 173
Query: 203 RKFKPARPYPRKLDRG----IFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
R + Y DRG + LL AYGY V R AF+ HF
Sbjct: 174 RGGR----YFSLGDRGEPVAAYQSLLAAYGYGVPCDGTFDDTTRQATVAFQRHF 223
>gi|238790377|ref|ZP_04634149.1| Negative regulator of beta-lactamase expression [Yersinia
frederiksenii ATCC 33641]
gi|238721564|gb|EEQ13232.1| Negative regulator of beta-lactamase expression [Yersinia
frederiksenii ATCC 33641]
Length = 257
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 129/271 (47%), Gaps = 33/271 (12%)
Query: 19 WEKNRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKY 75
++ + N Y S G + V++L+LHYT NFA I + T ++ S Y++ +K + Y
Sbjct: 2 YQIDYNSYRSVKGFNFRVRFLVLHYTSENFADSIASLTGSKV----SVQYLVPDKTDESY 57
Query: 76 LPGG----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
+ G ++ +V + RAWHAG W +N SIGI +VN E N+ P
Sbjct: 58 IQAGFKDMRIFNLVDEQARAWHAGESGWAGRTQINDSSIGIEIVNLATESEGI--FNFPP 115
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
+ QI + L +I+ ++ I P V+ H+DIAP K DPGP FPW +LY + GIGAW
Sbjct: 116 YPAEQIVAVKQLASNILQRYPDITPVNVVAHSDIAPTRKSDPGPAFPWQELY-EAGIGAW 174
Query: 191 LSPD--EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFK 244
D + + V P R L YGY++T N ++RAF+
Sbjct: 175 YDNDTKQKYAQHFVSHGLPT--------RAELLSRFSIYGYDITCANSDDGYHYLVRAFQ 226
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKY 275
HF PE I E +ALV KY
Sbjct: 227 LHF----RPENYSGSIDIETAAILYALVEKY 253
>gi|398883344|ref|ZP_10638301.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM60]
gi|398197006|gb|EJM83996.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM60]
Length = 260
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 34/232 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++++HYT + + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVVVHYTSASLERSLQLLT----HGEVSSHYLIGDDKN-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV----VGEKFRSTNYYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G GE++ +YP+ E Q+ +L
Sbjct: 77 MDENQRAWHAGESEWQGRTWLNSSSIGIEIVNPGFKELPTGERY----WYPYSEAQVQSL 132
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W PDE V
Sbjct: 133 IVLLKDISKRHAISPRSIIGHSDIAPFRKLDPGPLFPWKRLAAE-GLGVW--PDEQAVTR 189
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY T + R VI AF+ HF
Sbjct: 190 QQVQFDSKLP-----SVSWFQAQLARLGYATPQTGELDVATRHVIGAFQMHF 236
>gi|343505616|ref|ZP_08743178.1| putative N-acetylmuramoyl-L-alanine amidase [Vibrio ichthyoenteri
ATCC 700023]
gi|342806833|gb|EGU42042.1| putative N-acetylmuramoyl-L-alanine amidase [Vibrio ichthyoenteri
ATCC 700023]
Length = 256
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 32/266 (12%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + V++L++HYT +F+ + + + S+HY++ + E Y+ G
Sbjct: 7 NSYRSVKGFNRRVRFLVMHYTAADFSSSVKFLSGDGGV---SAHYLVPDPTEKTYINSGF 63
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY--PFDE 134
++ +V + RAWHAGI W+ N+N SIGI +VN K+ + PF +
Sbjct: 64 KDMRIFNLVDEGDRAWHAGISNWQGRSNINDTSIGIEIVNLA----KYEDGEFVFPPFKQ 119
Query: 135 NQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
QI + +L +I+ ++ I P V+GH+DIA G K DPGPLFPW +LY YG+GAW
Sbjct: 120 EQIEAVKILALNIIQRYPDISPINVIGHSDIAAGRKSDPGPLFPWFELY-QYGVGAWYD- 177
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSA 249
DE R K P R + +K YGY+++I +++IR+F+ HF
Sbjct: 178 DETKDNYYNRFCKEGIP-----TRDDIISKMKIYGYDISIAKTDDGYQNLIRSFQLHFRQ 232
Query: 250 NQNPERIYADITTEDMFWAWALVAKY 275
+ R + E ++LV KY
Sbjct: 233 KKYDGR----MDEETAAILYSLVDKY 254
>gi|451983742|ref|ZP_21932018.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 18A]
gi|451758688|emb|CCQ84541.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 18A]
Length = 259
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 121/235 (51%), Gaps = 31/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N ++ + V++++LHYT + H + T H S+HY+I + E V
Sbjct: 24 NTDYTSANQDSRVQFIVLHYTSTDLPHSLGILT----HGGVSAHYLIGDDEP-----ATV 74
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
++V +N RAWHAG+ +W+ LN+ SIGI +VN G +R T +YPF E QI
Sbjct: 75 YRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQG-----YRDTPQGRVWYPFSEAQI 129
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L KDI + I P ++GH+DIAPG K+DPGPLFPW +L D G+ W P E+
Sbjct: 130 QALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLA-DAGLVPWPKPGEL- 187
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
R+ A + D F + L +GY V T + R VI AF+ +
Sbjct: 188 ----ARRL--AELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKY 236
>gi|422643615|ref|ZP_16706754.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330957168|gb|EGH57428.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 259
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 33/231 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H SSHY+I + V ++
Sbjct: 30 NFDNR----VQYVVMHYTSTSLERSLQLLT----HGEVSSHYLIGDDAK-----ATVYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V +N RAWHAG +W LNS SIGI +VN G E +YP+ E Q+ ++ +L
Sbjct: 77 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYSEAQVRSMIVLL 135
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAI 201
KDIV + KI P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V +A+
Sbjct: 136 KDIVKRNKIDPKHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGIW--PDERQVAQRQAL 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 193 LAVNLPSITW--------FQQQLARLGYSTPQTGELDTATRQVLAAFQMHY 235
>gi|424896055|ref|ZP_18319629.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|393180282|gb|EJC80321.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WSM2297]
Length = 253
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 34/251 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFT-SNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH + DG ++LHYT A + A RA + SSHY + E G+V+
Sbjct: 18 NHGERADGRRPDMILLHYTGMPTA--VGALDWLCRAESQVSSHYFVHEN-------GEVV 68
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI +
Sbjct: 69 QLVPEVRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIE 122
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L +D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG W+ P +T
Sbjct: 123 LCRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWSELHR-AGIGHWVEPATITGGRFF 181
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI- 256
++ +P +L YGY+ IT + S + AF+ HF PER+
Sbjct: 182 QRGDAGQPVE------ALQSMLSLYGYSTEITGQFSEKTAGDVEAFQRHF----RPERVD 231
Query: 257 -YADITTEDMF 266
AD +T D
Sbjct: 232 GIADFSTIDTL 242
>gi|400405030|ref|YP_006587889.1| negative regulator of beta-lactamase expression [secondary
endosymbiont of Ctenarytaina eucalypti]
gi|400363393|gb|AFP84461.1| negative regulator of beta-lactamase expression [secondary
endosymbiont of Ctenarytaina eucalypti]
Length = 307
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 119/248 (47%), Gaps = 23/248 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++LI HYT + + T S+HY++ + ++Q+VP+N RAWH
Sbjct: 65 VRFLIFHYTAVDDNESLRLLTQGSV----SAHYLVPTNHTEIRGKPVILQLVPENKRAWH 120
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W N+N SIGI +VN G E + + + Q L +DI++++ I
Sbjct: 121 AGVSSWAGRNNINDTSIGIEIVNDG-FHEGPTGKQWITYHKKQTALAAALARDIIARYHI 179
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA-IVRKFKPARPYP 212
KPQ VL H+DIAP K DPGP FPW +L G+GAW PD+ T++ + RK + +
Sbjct: 180 KPQNVLAHSDIAPLRKSDPGPRFPWYEL-AKRGVGAW--PDDATLKKHLQRKHRCSSG-- 234
Query: 213 RKLDRGIFLELLKAYGYNVTITNKRS-----VIRAFKTHFSANQNPERIYADITTEDMFW 267
+ + L YGY + T VI AF+ HF P E
Sbjct: 235 ---SVALIQQALGTYGYTIPQTGTLDQETLRVISAFQMHF----RPSNCTGAADKETEAI 287
Query: 268 AWALVAKY 275
A ALV KY
Sbjct: 288 AKALVEKY 295
>gi|237797952|ref|ZP_04586413.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331020803|gb|EGI00860.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 250
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 41/235 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R V+Y+++HYT + + T H S+HY+I + + + ++
Sbjct: 21 NFDNR----VQYVVMHYTSTSMERSLQLLT----HGEVSAHYLIGDDKQ-----ATIYKL 67
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G F+ T +YP+ E Q+ ++
Sbjct: 68 VDENARAWHAGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEAQVQSI 122
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV-- 198
+L KDIV + KI P++V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 123 TVLLKDIVKRNKIDPRHVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGVW--PDEALVAQ 179
Query: 199 -EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+A++ P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 180 RQALLAVNLPSISW--------FQQQLARLGYSTPQTGELDVATREVLAAFQMHY 226
>gi|15600678|ref|NP_254172.1| AmpDh2 [Pseudomonas aeruginosa PAO1]
gi|107104587|ref|ZP_01368505.1| hypothetical protein PaerPA_01005666 [Pseudomonas aeruginosa PACS2]
gi|116053635|ref|YP_793962.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218894588|ref|YP_002443458.1| AmpDh2 [Pseudomonas aeruginosa LESB58]
gi|254237833|ref|ZP_04931156.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243037|ref|ZP_04936359.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296392350|ref|ZP_06881825.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa PAb1]
gi|313111574|ref|ZP_07797373.1| putative N-acetylmuramoyl-L-alanine amidase family protein
[Pseudomonas aeruginosa 39016]
gi|355650820|ref|ZP_09056286.1| hypothetical protein HMPREF1030_05372 [Pseudomonas sp. 2_1_26]
gi|386061663|ref|YP_005978185.1| AmpDh2 [Pseudomonas aeruginosa M18]
gi|386069149|ref|YP_005984453.1| putative N-acetylmuramoyl-L-alanine amidase family protein
[Pseudomonas aeruginosa NCGM2.S1]
gi|392987209|ref|YP_006485796.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa DK2]
gi|416859116|ref|ZP_11913684.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 138244]
gi|416877914|ref|ZP_11920053.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 152504]
gi|418586770|ref|ZP_13150808.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418591525|ref|ZP_13155421.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
MPAO1/P2]
gi|419757313|ref|ZP_14283657.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
PADK2_CF510]
gi|420142655|ref|ZP_14650245.1| AmpDh2 [Pseudomonas aeruginosa CIG1]
gi|421153158|ref|ZP_15612719.1| AmpDh2 [Pseudomonas aeruginosa ATCC 14886]
gi|421164016|ref|ZP_15622684.1| AmpDh2 [Pseudomonas aeruginosa ATCC 25324]
gi|421177749|ref|ZP_15635395.1| AmpDh2 [Pseudomonas aeruginosa CI27]
gi|421183613|ref|ZP_15641062.1| AmpDh2 [Pseudomonas aeruginosa E2]
gi|421520058|ref|ZP_15966729.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa PAO579]
gi|424943707|ref|ZP_18359470.1| putative N-acetylmuramoyl-L-alanine amidase family protein AmpDh2
[Pseudomonas aeruginosa NCMG1179]
gi|9951819|gb|AAG08870.1|AE004961_5 AmpDh2 [Pseudomonas aeruginosa PAO1]
gi|115588856|gb|ABJ14871.1| putative N-acetylmuramoyl-L-alanine amidase family protein
[Pseudomonas aeruginosa UCBPP-PA14]
gi|126169764|gb|EAZ55275.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196415|gb|EAZ60478.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218774817|emb|CAW30635.1| AmpDh2 [Pseudomonas aeruginosa LESB58]
gi|310883875|gb|EFQ42469.1| putative N-acetylmuramoyl-L-alanine amidase family protein
[Pseudomonas aeruginosa 39016]
gi|334838773|gb|EGM17480.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 138244]
gi|334839038|gb|EGM17736.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa 152504]
gi|346060153|dbj|GAA20036.1| putative N-acetylmuramoyl-L-alanine amidase family protein AmpDh2
[Pseudomonas aeruginosa NCMG1179]
gi|347307969|gb|AEO78083.1| AmpDh2 [Pseudomonas aeruginosa M18]
gi|348037708|dbj|BAK93068.1| putative N-acetylmuramoyl-L-alanine amidase family protein
[Pseudomonas aeruginosa NCGM2.S1]
gi|354826574|gb|EHF10785.1| hypothetical protein HMPREF1030_05372 [Pseudomonas sp. 2_1_26]
gi|375042726|gb|EHS35370.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049584|gb|EHS42075.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
MPAO1/P2]
gi|384396354|gb|EIE42773.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322714|gb|AFM68094.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa DK2]
gi|403244565|gb|EJY58431.1| AmpDh2 [Pseudomonas aeruginosa CIG1]
gi|404345977|gb|EJZ72329.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa PAO579]
gi|404524144|gb|EKA34497.1| AmpDh2 [Pseudomonas aeruginosa ATCC 14886]
gi|404526680|gb|EKA36881.1| AmpDh2 [Pseudomonas aeruginosa ATCC 25324]
gi|404528939|gb|EKA38997.1| AmpDh2 [Pseudomonas aeruginosa CI27]
gi|404539707|gb|EKA49154.1| AmpDh2 [Pseudomonas aeruginosa E2]
gi|453044807|gb|EME92529.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas aeruginosa
PA21_ST175]
Length = 259
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 121/235 (51%), Gaps = 31/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N ++ + V++++LHYT + H + T H S+HY+I + E V
Sbjct: 24 NTDYTSANQDSRVQFIVLHYTSTDLPHSLGILT----HGGVSAHYLIGDDEP-----ATV 74
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
++V +N RAWHAG+ +W+ LN+ SIGI +VN G +R T +YPF E QI
Sbjct: 75 YRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQG-----YRDTPQGRVWYPFSEAQI 129
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L KDI + I P ++GH+DIAPG K+DPGPLFPW +L D G+ W P E+
Sbjct: 130 QALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLA-DAGLVPWPKPGEL- 187
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
R+ A + D F + L +GY V T + R VI AF+ +
Sbjct: 188 ----ARRL--AELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKY 236
>gi|398947684|ref|ZP_10672320.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM33]
gi|398161596|gb|EJM49823.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM33]
Length = 259
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR V++++LHYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----VQFVVLHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWDGRTWLNSSSIGIEIVNPG-----FKDTPAGRVWYPYSEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + IKP+ ++GH+DIAP K+DPGPLFPW +L + G+G W P E V
Sbjct: 132 IVLLKDISKRQGIKPRDIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGIW--PSEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P F L GY T + R VI AF+ HF
Sbjct: 189 QQMLFAEQLP-----SISWFQAQLARLGYATPQTGELDVATRHVIAAFQMHF 235
>gi|49082910|gb|AAT50855.1| PA5485, partial [synthetic construct]
Length = 260
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 121/235 (51%), Gaps = 31/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N ++ + V++++LHYT + H + T H S+HY+I + E V
Sbjct: 24 NTDYTSANQDSRVQFIVLHYTSTDLPHSLGILT----HGGVSAHYLIGDDEP-----ATV 74
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
++V +N RAWHAG+ +W+ LN+ SIGI +VN G +R T +YPF E QI
Sbjct: 75 YRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQG-----YRDTPQGRVWYPFSEAQI 129
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L KDI + I P ++GH+DIAPG K+DPGPLFPW +L D G+ W P E+
Sbjct: 130 QALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLA-DAGLVPWPKPGEL- 187
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
R+ A + D F + L +GY V T + R VI AF+ +
Sbjct: 188 ----ARRL--AELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKY 236
>gi|402701350|ref|ZP_10849329.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fragi A22]
Length = 260
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 118/232 (50%), Gaps = 36/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V++++LHYT + + TS SSHY+I + + ++
Sbjct: 30 NHDSR----VQFVVLHYTSTSLERSLQLLTSGPV----SSHYLIGDTPPT------IYKL 75
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V +N RAWHAG +W LNS SIGI +VN G FR T +YP+ E QI ++
Sbjct: 76 VDENQRAWHAGESQWNGRTWLNSSSIGIEIVNKG-----FRDTPNGRVWYPYTEGQIQSV 130
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI +++KI P ++GH+DIAP K+DPGPLFPW +L + G G W P V
Sbjct: 131 IALLKDITTRYKIDPHNIIGHSDIAPLRKLDPGPLFPWKRLA-EAGFGVW--PQAQAVAR 187
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F A P G F + L GY T + R V+ AF+ HF
Sbjct: 188 EQALFANALP-----SIGWFQQQLALLGYETPQTGELDVATRHVLAAFQMHF 234
>gi|254470560|ref|ZP_05083964.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062]
gi|211960871|gb|EEA96067.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062]
Length = 252
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 25/228 (10%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+++ R + LILHYT A ++ + + S HY++ E G V Q+
Sbjct: 18 NHNERRVPAADMLILHYTAMESAEKAISWLCDPRSEV-SCHYLVDEM-------GMVTQM 69
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP++ RAWHAGI W+ + +LNS SIGI + N G + E T YP + QI + L
Sbjct: 70 VPESRRAWHAGISSWKGEDDLNSRSIGIEISNMGDLEE---GTQDYP--DVQIEAVIALA 124
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDI + I P+ VLGH+D+AP K DPG FPW +L + G+G ++ P ++ + ++
Sbjct: 125 KDICERHNIAPERVLGHSDVAPSRKQDPGRHFPWARLA-EAGVGHFIEPVDIDASSFFQE 183
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+P LL YGY+V ++ R + AF+ HF
Sbjct: 184 GDEGQPIE------ALQSLLGLYGYDVMVSGVFDEKTRFAVEAFQRHF 225
>gi|307944914|ref|ZP_07660251.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4]
gi|307771838|gb|EFO31062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4]
Length = 254
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 28/234 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHI-ITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH + G S+ LILHYT A + RA S+HYV+ E GG ++
Sbjct: 18 NHGERVGGGSIDMLILHYTGMETAEAALQRLCDPRAEV--SAHYVVEE-------GGSIL 68
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ RAWHAG W+ ++NS SIGI +VN G +Y F + QI +
Sbjct: 69 QCVPEARRAWHAGRSYWKGTTDINSRSIGIEIVNRGY------DYDYPEFPDVQIEAVCD 122
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L DIV + +IKP VL H+DIAP K+DPG FPWG+L G+G ++ P+ +
Sbjct: 123 LCADIVERHEIKPWRVLAHSDIAPDRKLDPGEKFPWGRLAAK-GVGLYVEPEVTGRGIFM 181
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQ 251
++ + +P +L +GY + +T + R + AF+ H+ Q
Sbjct: 182 QEGESGQPVE------ALQSMLAIFGYRMEVTGQFDATTRLAVEAFQRHYRPEQ 229
>gi|319407306|emb|CBI80947.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella sp. 1-1C]
Length = 260
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 132/264 (50%), Gaps = 26/264 (9%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y + G + V++L++HYT NF + T S+HY++ + E Y+ G
Sbjct: 7 NSYRTVKGFNRRVRFLVMHYTAANFKSSVITLTGPSV----SAHYLVPDPSEQTYIDAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V +N RAWHAGI W NLN +IGI VN + + + PF Q
Sbjct: 63 KDMRIFNLVDENERAWHAGISSWAGRNNLNDTAIGIETVN--LATDNNGKFTFPPFHPEQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIAPG K+DPG FPW KLY D GIGAW ++
Sbjct: 121 IDAIKELAFNILQRYPDISPTNVVGHSDIAPGRKIDPGAAFPWKKLY-DSGIGAWYDAEQ 179
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQ 251
++ +F K + + LK YGY+++ N S +I AF+ HF Q
Sbjct: 180 K--DSYQEEFTKDPSLFAKAKEEVIAK-LKKYGYDISGANTESGYKNLIMAFQLHF--RQ 234
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
DI T + +ALV KY
Sbjct: 235 ENYNGLLDIETAAII--YALVEKY 256
>gi|222086456|ref|YP_002544990.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium radiobacter K84]
gi|221723904|gb|ACM27060.1| N-acetylmuramoyl-L-alanine amidase protein [Agrobacterium
radiobacter K84]
Length = 253
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + G ++LHYT A + RA + SSHY +
Sbjct: 10 GASVQPSP------NHGEREGGRKPDMILLHYTGMGTAEGALDWLC-RAESQVSSHYFVF 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+V+Q+VP+ RAWHAG WR + ++NS+SIGI + N G G
Sbjct: 63 ED-------GRVVQLVPEERRAWHAGKSLWRDEADINSLSIGIEIANAGHPG------GL 109
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F + Q+ + L +D ++ I P+ VLGH+D+AP K+DPG FPW +L G+G
Sbjct: 110 PDFPDAQVEAVIELCRDCGQRWAIAPERVLGHSDVAPVRKVDPGEKFPWARLAA-AGVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P +T +K +P +L YGY IT + S ++AF+
Sbjct: 169 WVEPAPITGGRFFQKGDVGQPIE------ALQSMLSLYGYGTEITGEFSTKLEGDVQAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF P R+ AD +T D
Sbjct: 223 RHF----RPARVDGIADFSTIDTL 242
>gi|148545404|ref|YP_001265506.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida F1]
gi|386009795|ref|YP_005928072.1| AmiD [Pseudomonas putida BIRD-1]
gi|395446455|ref|YP_006386708.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida ND6]
gi|148509462|gb|ABQ76322.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas putida
F1]
gi|313496501|gb|ADR57867.1| AmiD [Pseudomonas putida BIRD-1]
gi|388560452|gb|AFK69593.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida ND6]
Length = 262
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T SSHY+I + V
Sbjct: 27 DRSHPSANQDNRIQFVVLHYTNASLERSLALLTQGEV----SSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E QI +L
Sbjct: 77 YQLVDENRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQIQSLI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGIW--PDANAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYQIEQTGVLDVATRHVIAAFQMRF 238
>gi|440227121|ref|YP_007334212.1| N-acetylmuramoyl-L-alanine amidase family 2 [Rhizobium tropici CIAT
899]
gi|440038632|gb|AGB71666.1| N-acetylmuramoyl-L-alanine amidase family 2 [Rhizobium tropici CIAT
899]
Length = 253
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 119/250 (47%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + RDG L+LHYT A + RA + SSHY + E G+V+Q
Sbjct: 18 NHGERRDGHRPDILLLHYTGMGTAEGALDWLC-RAESQVSSHYFVFED-------GRVMQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS SIGI + N G G F + QI + L
Sbjct: 70 LVPEERRAWHAGKSFWHGETDINSSSIGIEIANAGHPG------GLPEFPDEQIEAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D ++ I P+ VLGH+D+AP K+DPG FPW +L G+G W+ P +T +
Sbjct: 124 CRDCGQRWAIAPERVLGHSDVAPVRKVDPGEKFPWARLAA-AGVGHWVEPASITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI-- 256
K +P +L YGYN I + + + AF+ HF ER+
Sbjct: 183 KGDVGQPIE------ALQSMLSLYGYNTEINGEFSEKLKGDVEAFQRHF----RQERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|257481809|ref|ZP_05635850.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422680098|ref|ZP_16738370.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331009444|gb|EGH89500.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 259
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSISMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L + GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLASLGYSAPQTGELDTATRQVLAAFQMHY 235
>gi|402488374|ref|ZP_10835186.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium sp. CCGE 510]
gi|401812765|gb|EJT05115.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium sp. CCGE 510]
Length = 253
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + RA + SSHY + E G+V+Q
Sbjct: 18 NHGERADGRRPDMILLHYTGMPKADGALDWLC-RAESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W+ ++NS+SIGI + N G G YP + Q+ + L
Sbjct: 70 LVPEVRRAWHAGKSSWQGKTDINSLSIGIEIANAGHPG----GLPDYP--KEQVAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ G+G W+ P +T +
Sbjct: 124 CRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELHR-AGVGHWVEPATITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY+ IT + S + AF+ HF PER+
Sbjct: 183 RGDAGQPVE------ALQSMLSLYGYSTEITGEFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|417372185|ref|ZP_12142542.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353605984|gb|EHC60344.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
Length = 201
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 111/216 (51%), Gaps = 30/216 (13%)
Query: 74 KYLPGGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFR 125
K L GGK + Q+VP+ +AWHAG+ WR LN SIGI L N GGV
Sbjct: 3 KPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV------ 56
Query: 126 STNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDY 185
++ PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L
Sbjct: 57 -KSFAPFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ- 114
Query: 186 GIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIR 241
GIGAW PD V + P P +D L LL YGY V T ++ VI
Sbjct: 115 GIGAW--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIM 168
Query: 242 AFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
AF+ HF Q AD T+ + A AL+ KYG
Sbjct: 169 AFQMHFRPAQ--WNGIADAETQAI--AEALLEKYGQ 200
>gi|398930274|ref|ZP_10664466.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM48]
gi|398165516|gb|EJM53632.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM48]
Length = 259
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V++++LHYT + + T H SSHY+I + +G + ++
Sbjct: 30 NHDSR----VQFVVLHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENLRAWHAGESEWNGRTWLNSSSIGIEIVNPG-----FKDTPTGRVWYPYTEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I+P ++GH+DIAP K+DPGPLFPW +L + G+G W P+E +V
Sbjct: 132 IVLLKDISKRHGIRPGDIIGHSDIAPMRKLDPGPLFPWKRLAAE-GLGIW--PNEQSVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY T + R+VI AF+ HF
Sbjct: 189 QQMQFAEQLP-----SISWFQAQLARLGYASPQTGELDVATRNVIAAFQLHF 235
>gi|398868400|ref|ZP_10623799.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM78]
gi|398233370|gb|EJN19304.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM78]
Length = 259
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR +++++LHYT + + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----IQFVVLHYTNASLERSLQLLT----HGEVSSHYLIGDDKK-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W+ +NS SIGI +VN G F+ T +YP+ E Q+ +L
Sbjct: 77 MDENLRAWHAGESQWQGRTWMNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEAQVESL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI ++ I P+ ++GH+DIAP K+DPGPLFPW +L + GIG W P+E V
Sbjct: 132 IVLLKDISQRYAISPRSIVGHSDIAPLRKLDPGPLFPWKRL-AEQGIGIW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F+ P F L GY+ T + R V+ AF+ HF
Sbjct: 189 QQPRFETQLP-----SISWFQAQLARVGYDTPQTGELDVATRHVLAAFQMHF 235
>gi|424871563|ref|ZP_18295225.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|393167264|gb|EJC67311.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 253
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 123/250 (49%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + A + SSHY + E G+V+Q
Sbjct: 18 NHGERADGRRPDMILLHYTGMPTADGALDWLCC-AESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEMRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW L+ GIG W+ P +T ++
Sbjct: 124 CRDCVKRWSITPERVLGHSDVAPLRKVDPGEKFPWAALH-QAGIGHWVEPATITGGRFLQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY+ IT + S + AF+ HF PER+
Sbjct: 183 RGDTGQPVE------ALQSMLSLYGYSTEITGEFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|400286524|ref|ZP_10788556.1| negative regulator of AmpC, AmpD [Psychrobacter sp. PAMC 21119]
Length = 293
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 32/230 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K ++LHYTV + I T+ + S+HY++ + + K+ +VP+N RAWH
Sbjct: 49 IKTIVLHYTVSDNDRSIKTLTTGKV----SAHYLVLDNDD-----NKIYNLVPENERAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGE-----KFRSTNYYP------FDENQIHTLGL 142
AG G + LN SIGI +VN G+ E K + +Y+P FD+ QI +
Sbjct: 100 AGDGGFAGRTILNDTSIGIEIVNAGIAPEYKDALKNGNIDYHPYEHYVAFDKLQIKKVAE 159
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L +DI +++ I P+ ++GH+D+AP K+DPG FPW +LY YGIGAW +
Sbjct: 160 LVQDITARYDISPKNIIGHSDMAPSRKIDPGAKFPWQQLYKQYGIGAWYEDADKLAFMDT 219
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F A K + + YGY + +++ R V+ AF+ HF
Sbjct: 220 DAFAAATIPEIK-------QQFRDYGYQINNSDEWDKASRDVVYAFQLHF 262
>gi|417509616|ref|ZP_12174741.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353648805|gb|EHC91597.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
Length = 206
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 30/212 (14%)
Query: 78 GGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNY 129
GGK + Q+VP+ +AWHAG+ WR LN SIGI L N GGV ++
Sbjct: 12 GGKPRIWQLVPEQYQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSF 64
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGA
Sbjct: 65 APFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGA 123
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKT 245
W PD V + P P +D L LL YGY V T ++ VI AF+
Sbjct: 124 W--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQM 177
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF Q AD T+ + A AL+ KYG
Sbjct: 178 HFRPAQ--WNGIADAETQAI--AEALLEKYGQ 205
>gi|452124141|ref|ZP_21936725.1| N-acetylmuramoyl-L-alanine amidase [Bordetella holmesii F627]
gi|452127527|ref|ZP_21940108.1| N-acetylmuramoyl-L-alanine amidase [Bordetella holmesii H558]
gi|451923371|gb|EMD73512.1| N-acetylmuramoyl-L-alanine amidase [Bordetella holmesii F627]
gi|451926807|gb|EMD76937.1| N-acetylmuramoyl-L-alanine amidase [Bordetella holmesii H558]
Length = 260
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 21/219 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y++LHYT + A + + + S+HY++S + P +V Q+V +N AWH
Sbjct: 34 VRYIVLHYTTADDAESLRLLSQTQV----SAHYLVSAR-----PDARVYQLVDENRSAWH 84
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W +LN SIGI +VN G + + Y P+ QI L L ++I + I
Sbjct: 85 AGASRWFEQNSLNFTSIGIEIVNAGWQKQADGTLLYAPYLPAQITALSHLLREIAGRHGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+P+ ++GH+DIAP K+DPGP FPW L + GIG W + DE + ++R + P
Sbjct: 145 RPENIVGHSDIAPQRKLDPGPAFPWRALAQE-GIGRWYNEDEAATQ-LLRLQSASLP--- 199
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
D F L GY+ K R+V+ AF+ H+
Sbjct: 200 --DVAWFQTELARLGYDTPRHGKLDRATRNVLTAFQMHY 236
>gi|71734050|ref|YP_272559.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416019373|ref|ZP_11566266.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
glycinea str. B076]
gi|416022237|ref|ZP_11567477.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|71554603|gb|AAZ33814.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322201|gb|EFW78297.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331852|gb|EFW87790.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 259
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+I+HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVIMHYTSTSMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSTPQTGELDTATRQVLAAFQMHY 235
>gi|51596718|ref|YP_070909.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP
32953]
gi|153947682|ref|YP_001400626.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP
31758]
gi|186895780|ref|YP_001872892.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis PB1/+]
gi|51590000|emb|CAH21633.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia
pseudotuberculosis IP 32953]
gi|152959177|gb|ABS46638.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia
pseudotuberculosis IP 31758]
gi|186698806|gb|ACC89435.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis PB1/+]
Length = 254
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 24/224 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF I A T S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTALNFKDSIDALTGPSV----SAHYLVPDPTEQTYIDAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN +IGI VN + + + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSYWDGRNNLNDTAIGIETVNLATDNDGVFT--FPPYNVTQIAAIKALASNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+F I P V+GH+DIAPG K DPG FPW LY D GIGAW D+ T + + +F
Sbjct: 133 YRFPDITPVNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWY--DDETKQRYLEQFLC 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHF 247
P + + LK YGY+ V+ +IRAF+ HF
Sbjct: 190 GLP-----SKNDIISKLKRYGYDTSGAVSEVGYNQLIRAFQLHF 228
>gi|26986875|ref|NP_742300.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida KT2440]
gi|24981477|gb|AAN65764.1|AE016202_7 N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
putida KT2440]
Length = 262
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H SSHY+I + V
Sbjct: 27 DRSHPSANQDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E Q+ L
Sbjct: 77 YQLVDENRRAWHAGESQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQVQALI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGIW--PDANAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R V+ AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYQIEQTGVLDVATRHVVAAFQMRF 238
>gi|289646453|ref|ZP_06477796.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 259
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSISMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATSL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSTPQTGELDTATRQVLAAFQMHY 235
>gi|348028090|ref|YP_004870776.1| hypothetical protein GNIT_0630 [Glaciecola nitratireducens FR1064]
gi|347945433|gb|AEP28783.1| hypothetical protein GNIT_0630 [Glaciecola nitratireducens FR1064]
Length = 847
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 128/270 (47%), Gaps = 43/270 (15%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP--GGKVIQIVPDNMRA 91
VK L++H+T N+ + A A SSHY+I + + P KV Q+V +N RA
Sbjct: 40 VKSLVMHFTAVNYQESVDALV---AEGNVSSHYLIPKADDPSYPYRVPKVFQLVDENQRA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVV-------------------GEKFRSTNYYP- 131
WHAGI W+ LN SIGI +VN EK R +P
Sbjct: 97 WHAGISYWQGRSGLNDHSIGIEIVNTPSCQEDWPVDASAQAVIPEIMGAEKNRDLCVFPE 156
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+E QI L L K+I+++ I+P V+GH+DIAP K DPGP FPW +LY + GIGAW
Sbjct: 157 FEEKQIQLLIKLSKEILARNPDIEPTAVIGHSDIAPARKNDPGPKFPWYRLYKE-GIGAW 215
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKR-----SVIRAFKT 245
D + + F P G+ + L YGY++ T + + AF+
Sbjct: 216 YENDSLMHHWLA--FNQTSP-----SLGLIQKALGTYGYDIVATGRMDQQTIDTLSAFQM 268
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKY 275
HF P ++ ++ + +AL+ KY
Sbjct: 269 HFV----PWQVTGELNNQTAAAVFALLEKY 294
>gi|417538066|ref|ZP_12190773.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
gi|353667314|gb|EHD04863.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 30/212 (14%)
Query: 78 GGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNY 129
GGK + Q+VP+ +AWHAG+ WR LN SIGI L N GGV ++
Sbjct: 12 GGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSF 64
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGA
Sbjct: 65 APFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGA 123
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKT 245
W PD V + P P +D L LL YGY V T ++ VI AF+
Sbjct: 124 W--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQM 177
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF Q AD T+ + A AL+ KYG
Sbjct: 178 HFRPAQ--WNGIADAETQAI--AEALLEKYGQ 205
>gi|374332637|ref|YP_005082821.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudovibrio sp. FO-BEG1]
gi|359345425|gb|AEV38799.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudovibrio sp. FO-BEG1]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 25/228 (10%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+++ R + LILHYT A + + + S HY++ E G V Q+
Sbjct: 18 NHNERRVPAADMLILHYTAMESAEKAIYWLCDPRSEV-SCHYLVDEM-------GMVTQM 69
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP++ RAWHAG+ W+ + +LNS SIGI + N G + E T YP + QI + L
Sbjct: 70 VPESRRAWHAGVSSWKGEDDLNSRSIGIEISNMGDLEE---GTQDYP--DVQIEAVIALA 124
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDI + I P+ VLGH+D+AP K DPG FPW +L + G+G ++ P E+ + ++
Sbjct: 125 KDICERHNIAPERVLGHSDVAPSRKQDPGRHFPWARL-AEAGVGHFIEPVEIDASSFFQE 183
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+P LL YGY+V ++ R + AF+ HF
Sbjct: 184 GDEGQPIE------ALQSLLGLYGYDVMVSGVFDEKTRFAVEAFQRHF 225
>gi|398920250|ref|ZP_10659167.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM49]
gi|398168259|gb|EJM56280.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM49]
Length = 259
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR V+++++HYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----VQFVVVHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWNGRTWLNSSSIGIEIVNPG-----FKDTPTGRVWYPYTEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I+P+ ++GH+DIAP K+DPGPLFPW +L + G+G W P+E +V
Sbjct: 132 IVLLKDISKRHGIRPRDIVGHSDIAPFRKLDPGPLFPWKRLAAE-GLGIW--PNEQSVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY T + R VI AF+ HF
Sbjct: 189 QQMQFAEQLP-----SISWFQAQLAHLGYASPQTGELDVATRHVIAAFQMHF 235
>gi|421523048|ref|ZP_15969681.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida LS46]
gi|402753153|gb|EJX13654.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida LS46]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T SSHY+I + V
Sbjct: 15 DRSHPSVNQDNRIQFVVLHYTNASLERSLALLTQGEV----SSHYLIGDGPAT------V 64
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E QI +L
Sbjct: 65 YQLVDENRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQIQSLI 123
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 124 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGIW--PDANAVARQ 180
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 181 QAYFSVNPP-----SVGWYQQELARFGYQIEQTGVLDVATRHVIAAFQMRF 226
>gi|284008757|emb|CBA75473.1| N-acetylmuramoyl-L-alanine amidase [Arsenophonus nasoniae]
Length = 258
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 27/252 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF + T + S+HY++ + + Y+ G + +V +N
Sbjct: 19 VRFLVMHYTAANFKSSVNMLTGSSV----SAHYLVPDPSDQTYIDAGFKNMCIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
R+WHAG+ W NLN +IGI VN + + + PF QI + L K+I+
Sbjct: 75 ERSWHAGVSNWAGRNNLNDTAIGIETVN--LATDNNGEFTFPPFHPQQIEAIIELSKNII 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I V+GH+DIAPG K DPG FPW LY GIGAW PD T+E +KF
Sbjct: 133 QRYPDISQVNVIGHSDIAPGRKSDPGAAFPWEDLY-KAGIGAW--PDIDTIEKYKKKF-I 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTE 263
++ P +R + L YGY+V N + + RAF+ HF E + TE
Sbjct: 189 SQGIP---ERNAIINLFNKYGYSVQNANNADGFKQLTRAFQLHFRQ----ENYDGVMDTE 241
Query: 264 DMFWAWALVAKY 275
+ AL KY
Sbjct: 242 TISILAALCEKY 253
>gi|152986437|ref|YP_001351595.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
gi|150961595|gb|ABR83620.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
Length = 259
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 120/230 (52%), Gaps = 35/230 (15%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V++++LHYT + H + T H S+HY+I + E V ++V
Sbjct: 33 DSR----VQFIVLHYTSTDLPHSLGILT----HGGVSAHYLIGDDEP-----ATVYRLVD 79
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGL 142
+N RAWHAG+ +W+ LN+ SIGI +VN G +R T +YPF E QI L
Sbjct: 80 ENRRAWHAGVSEWQGRTWLNATSIGIEIVNQG-----YRDTPQGRVWYPFSEAQIQALIP 134
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L KDI + I P ++GH+DIAPG K+DPGPLFPW +L D G+ W P E+
Sbjct: 135 LLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLA-DAGLVPWPKPGELA----- 188
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
R+ A + D F + L +GY V T + R VI AF+ +
Sbjct: 189 RRL--AELNGQLPDVRWFQQQLARHGYLVPQTGVLEQDTRDVIGAFQMKY 236
>gi|421591345|ref|ZP_16036218.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium sp. Pop5]
gi|403703204|gb|EJZ19523.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium sp. Pop5]
Length = 253
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + G ++LHYT + RA + SSHY + E G V+Q
Sbjct: 18 NHGERAHGRRPDMILLHYTGMPTPEGALDWLC-RAESQVSSHYFVHEN-------GDVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEARRAWHAGKSSWHSETDINSLSIGIEIANAGHPG----GLPDYP--KEQIVAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPWG+L+ G+G W+ P +T +
Sbjct: 124 CRDCVKRWSIAPERVLGHSDVAPVRKVDPGEKFPWGQLH-QAGVGHWVEPARITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PER+
Sbjct: 183 RGDAGQPVE------ALQSMLSLYGYGTEITGEFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|398845017|ref|ZP_10602064.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM84]
gi|398253962|gb|EJN39072.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM84]
Length = 258
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H S+HY+I + V
Sbjct: 23 DRSHPSANQDDRIQFVVLHYTNASLERSLELLT----HGEVSAHYLIGDGPAT------V 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q++ +N RAWHAG +W+ LNS SIGI +VN G + +YP+ E QI +L
Sbjct: 73 YQLIDENRRAWHAGESQWQGRTWLNSSSIGIEIVNPGF-DDTPNGRVWYPYTEAQIQSLI 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L + GIG W PD A+
Sbjct: 132 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRL-AEAGIGIW--PD---ANAV 185
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
R+ P + G + + L +GY + T + R VI AF+ F
Sbjct: 186 ARQQAYFNVNPPTI--GWYQQELARFGYAIEQTGQLDVATRHVIAAFQMRF 234
>gi|417455500|ref|ZP_12163521.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353634754|gb|EHC81244.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
Length = 199
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 30/212 (14%)
Query: 78 GGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNY 129
GGK + Q+VP+ +AWHAG+ WR LN SIGI L N GGV ++
Sbjct: 5 GGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSF 57
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGA
Sbjct: 58 APFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGA 116
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKT 245
W PD V + P P +D L LL YGY V T ++ VI AF+
Sbjct: 117 W--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQM 170
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF Q AD T+ + A AL+ KYG
Sbjct: 171 HFRPAQ--WNGIADAETQAI--AEALLEKYGQ 198
>gi|427744912|ref|ZP_18965577.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414066636|gb|EKT47159.1| N-acetylmuramoyl-L-alanine amidase AmiD, partial [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 195
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 30/212 (14%)
Query: 78 GGK--VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNY 129
GGK + Q+VP+ +AWHAG+ WR LN SIGI L N GGV ++
Sbjct: 1 GGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSF 53
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF+ QI L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGA
Sbjct: 54 APFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGA 112
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKT 245
W PD V + P P +D L LL YGY V T ++ VI AF+
Sbjct: 113 W--PDAQRVAFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQM 166
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKYGS 277
HF Q AD T+ + A AL+ KYG
Sbjct: 167 HFRPAQ--WNGIADAETQAI--AEALLEKYGQ 194
>gi|422607337|ref|ZP_16679338.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. mori
str. 301020]
gi|330890980|gb|EGH23641.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. mori
str. 301020]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSTSMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSTPQTGELDTATRQVLAAFQMHY 235
>gi|422596517|ref|ZP_16670798.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330986815|gb|EGH84918.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSISMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSAPQTGELDTATRQVLAAFQMHY 235
>gi|187477612|ref|YP_785636.1| N-acetylmuramoyl-L-alanine amidase [Bordetella avium 197N]
gi|115422198|emb|CAJ48722.1| putative N-acetylmuramoyl-L-alanine amidase [Bordetella avium 197N]
Length = 260
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++++LHYT + A + + + S+HY+I+EK P G+ Q+V +N AWH
Sbjct: 35 VRHIVLHYTALDDATSLKTLSRDEV----SAHYLIAEK-----PAGRTYQLVDENRAAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W +N SIGI LVN G + S Y P+ Q+ L L ++++ + I
Sbjct: 86 AGASRWFEQTAINLTSIGIELVNAGGQTQADGSLRYTPYSPAQMTALTRLLRELIQRHGI 145
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L GIG W DE A + + + ++ P
Sbjct: 146 HPENIVGHSDIAPQRKLDPGPLFPWREL-AQAGIGRWY--DEAGAAAHLTRLQ-SQALP- 200
Query: 214 KLDRGI--FLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
G+ F E L GY+ + R+V+ AF+ H+
Sbjct: 201 ----GVSWFQEQLSRLGYDSPRHGQLDRATRNVLAAFQMHY 237
>gi|298160197|gb|EFI01225.1| Negative regulator of beta-lactamase expression [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSISMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSTPQTGELDTATRQVLAAFQMHY 235
>gi|422010339|ref|ZP_16357320.1| N-acetylmuramoyl-L-alanine amidase [Providencia rettgeri Dmel1]
gi|414091642|gb|EKT53325.1| N-acetylmuramoyl-L-alanine amidase [Providencia rettgeri Dmel1]
Length = 295
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 130/266 (48%), Gaps = 30/266 (11%)
Query: 24 NHYDSRDG-MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI----SEKEGKYLPG 78
N Y S++ ++Y+I+HYTV + I T + SSHY+I K G+ +
Sbjct: 27 NRYPSKNSSQRIQYVIIHYTVSDDVRSIATLTQGQV----SSHYLIPSVPETKNGRPV-- 80
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
V+Q+VP+++++WHAG W LN SIGI +VN G+ + + ++E QI
Sbjct: 81 --VLQLVPESLKSWHAGESYWLHHNGLNDTSIGIEIVNAGLQKDVKGKQYWAHYNEAQIV 138
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L +DI+ ++ I P+ ++GH+DIAP K DPG FPW +L +GIGAW PD TV
Sbjct: 139 ALIPLLQDIMQRYNIPPENIIGHSDIAPLRKQDPGKAFPWQRL-AQHGIGAW--PDPKTV 195
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT------ITNKRSVIRAFKTHFSANQN 252
KF R + + L YGY+ + + +RAF+ F
Sbjct: 196 A----KFLAGRNANEPANVLRIQKALHFYGYSTIPLSGQLDSQTKETLRAFQLRF----R 247
Query: 253 PERIYADITTEDMFWAWALVAKYGSM 278
P I E A AL+ KY M
Sbjct: 248 PRDIEGQADAETEAIALALIEKYRDM 273
>gi|289627985|ref|ZP_06460939.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|422581730|ref|ZP_16656871.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330866578|gb|EGH01287.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 37/226 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVVMHYTSISMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFK 206
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLVAQHQALLATNL 197
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P+ + F + L GY+ T + R V+ AF+ H+
Sbjct: 198 PSISW--------FQQQLARLGYSTPETGELDTATRQVLAAFQMHY 235
>gi|398862282|ref|ZP_10617892.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM79]
gi|398230929|gb|EJN16933.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM79]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 35/254 (13%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
+S+ + G P + +YDSR ++++++HYT + + T H
Sbjct: 8 ASLLLLAGCASGPRIDTSHRSANYDSR----IQFVVMHYTSASLETSLQLLT----HGEV 59
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHY+IS+ + + +++ +N RAWHAG +W+ LNS SIGI +VN G
Sbjct: 60 SSHYLISDDKR-----ATIYKLMDENSRAWHAGESEWQGRTWLNSSSIGIEIVNQG---- 110
Query: 123 KFRSTN----YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPW 178
F T +YP+ E QI ++ L KDI + I P++++GH+DIAP K+DPGPLFPW
Sbjct: 111 -FEDTPNGRLWYPYSEAQIQSMIFLLKDISKRQGISPRHIIGHSDIAPMRKLDPGPLFPW 169
Query: 179 GKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-- 236
+L + G+G W P+E V +F P F L GY T +
Sbjct: 170 KRLAAE-GLGIW--PNEQAVARQQAQFAVQLP-----SISWFQAQLARLGYATPQTGELD 221
Query: 237 ---RSVIRAFKTHF 247
R+V+ AF+ HF
Sbjct: 222 VATRNVLAAFQLHF 235
>gi|407790556|ref|ZP_11137649.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Gallaecimonas xiamenensis 3-C-1]
gi|407203679|gb|EKE73664.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Gallaecimonas xiamenensis 3-C-1]
Length = 281
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 24/227 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK--VIQIVPDNMRA 91
V++L+LH+T +F + A + L SSHY+I + + P GK + Q+V + RA
Sbjct: 30 VQFLVLHFTAEHFQGSVDALVHS---GLVSSHYLIPQPDDPTYPYGKLKIFQLVAEKDRA 86
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVG-----EKFRSTNYYPFDENQIHTLGLLGKD 146
WHAG +W+ NLN SIGI +VN R Y F Q+ + L KD
Sbjct: 87 WHAGASQWQGRSNLNDQSIGIEIVNQPSCEPPPYPSGRRQCQYPDFAPAQMALVQALAKD 146
Query: 147 IVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
I++++ I P V+GH DIAP K DPGP FPW +LY G+GAW D+ V ++F
Sbjct: 147 ILARYPDIGPTQVVGHADIAPSRKDDPGPRFPWFELY-QAGVGAWY--DDADVSRFSQQF 203
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P + + L AYGY + + + + + AF+ HF
Sbjct: 204 SAEPP-----SLTLVQQALAAYGYGLAASGEPDRRTQDCLLAFQMHF 245
>gi|397697489|ref|YP_006535372.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida DOT-T1E]
gi|397334219|gb|AFO50578.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida DOT-T1E]
Length = 262
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T SSHY+I + V
Sbjct: 27 DRSHPSVNQDNRIQFVVLHYTNASLERSLALLTQGEV----SSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E QI +L
Sbjct: 77 YQLVDENRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQIQSLI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGIW--PDANAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYQIEQTGVLDVATRHVIAAFQMRF 238
>gi|218663447|ref|ZP_03519377.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli IE4771]
Length = 253
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 126/264 (47%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + DG ++LHYT + A + SSHY +
Sbjct: 10 GACVRPSP------NHGERADGRRPDMILLHYTGMPTPDGALDWLCC-AESQVSSHYFVH 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG W + ++NS+SIGI + N G G+
Sbjct: 63 EN-------GEVIQLVPEGRRAWHAGKSSWHGESDINSLSIGIEIANAGHPGD----LPD 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
YP + QI + L +D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG
Sbjct: 112 YP--KGQIAAVIELCRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELHR-AGIGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P ++T ++ +P +L YGY IT S + AF+
Sbjct: 169 WVEPAKITGGRFFQRGDSGQPVE------ALQSMLSLYGYGTEITAHFSEKTAGDVEAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF PERI AD +T D
Sbjct: 223 RHF----RPERIDGIADFSTIDTL 242
>gi|378580772|ref|ZP_09829425.1| N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp.
stewartii DC283]
gi|377816511|gb|EHT99613.1| N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp.
stewartii DC283]
Length = 260
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 136/264 (51%), Gaps = 28/264 (10%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK-YLPGG- 79
N Y S G + V++L++HYT +FA + A + S+HY++ + + K Y+ G
Sbjct: 9 NSYRSVKGFNRRVRFLVMHYTAVDFAASVQALAGD---GTVSAHYLVPDPDDKTYISAGF 65
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
+V +V +N RAWHAG+ W NLN +IG+ +VN + + + P++ Q
Sbjct: 66 NDMRVFNLVDENERAWHAGVSSWAGRSNLNDTAIGVEVVN--LASDNDGVFVFPPYNPVQ 123
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I+ + L +I+ ++ I P V+GH+DIAPG K DPG FPW LY + G+GAW D+
Sbjct: 124 IYAIKELAINILQRYPDISPVNVVGHSDIAPGRKSDPGAAFPWKTLY-EAGVGAWY--DD 180
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQ 251
T A + +F P D I + LK YGY+V T + + ++RAF+ HF
Sbjct: 181 DTRSAYLAQFTAGGMPP---DEDI-IARLKTYGYDVSGATTASGLQLLVRAFQLHFRQEN 236
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
I AD +AL KY
Sbjct: 237 YDGIIDADTAAV----LYALTDKY 256
>gi|407367523|ref|ZP_11114055.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mandelii JR-1]
Length = 259
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR ++++++HYT + + T H SSHY+I + +G + ++
Sbjct: 30 NHDSR----IQFVVVHYTSASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+R+WHAG +W+ LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENLRSWHAGESEWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI ++ I P+ ++GH+DIAP K+DPGPLFPW +L + GIG W P+E V
Sbjct: 132 IFLLKDISKRYNINPRSIIGHSDIAPLRKLDPGPLFPWKRLAGE-GIGVW--PNEQAVAR 188
Query: 201 IVRKFKPARP----YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P Y +L R GY T + R V+ AF+ HF
Sbjct: 189 QQTQFAAELPSISWYQGQLAR---------LGYATPQTGELDVATRHVLAAFQMHF 235
>gi|167589921|ref|ZP_02382309.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia ubonensis Bu]
Length = 214
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 102/185 (55%), Gaps = 12/185 (6%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY 75
F + ++ D+R +++L++HYT + A + T + S+HYV+ +
Sbjct: 31 FADTSRHAQGADAR----IRFLVMHYTESDEAQSLRTLTGDAV----SAHYVVPAQPRIE 82
Query: 76 LPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
V Q+VP+ RAWHAG+ W+ LN+ SIGI VNGG + + + P+
Sbjct: 83 WGKPVVYQLVPEAQRAWHAGVSAWQGATELNAASIGIENVNGGPA-DTPQGRTWQPYPPE 141
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
Q+ L L +DIV+++ I P V+GH+DIAP K+DPGP FPW L G+GAW PD+
Sbjct: 142 QVDALIRLSQDIVARYAIPPTRVVGHSDIAPQRKIDPGPAFPWRAL-AQAGVGAW--PDD 198
Query: 196 MTVEA 200
TV A
Sbjct: 199 ATVAA 203
>gi|398869760|ref|ZP_10625118.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM74]
gi|398210609|gb|EJM97253.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM74]
Length = 259
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 123/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR V+++++HYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----VQFVVVHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWDGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYTEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + IKP+ ++GH+DIAP K+DPGPLFPW +L + G+G W P+E +V
Sbjct: 132 IVLLKDISKRHGIKPRDIIGHSDIAPLRKLDPGPLFPWKRLASE-GLGIW--PNEQSVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P F L GY T + R VI AF+ HF
Sbjct: 189 QQMLFAEQLP-----SISWFQAQLARLGYASPQTGELDVATRHVIAAFQMHF 235
>gi|118590912|ref|ZP_01548312.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614]
gi|118436434|gb|EAV43075.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614]
Length = 254
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 32/246 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH +G +V ++LHYT A + + S+HY+++E G ++Q
Sbjct: 18 NHGQRAEGTAVDMVVLHYTGMPSAEAALQRLCDPRSEV-SAHYIVNED-------GSILQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
VP+ RAWHAG W+ ++NS SIG+ +VN G Y F E QI + L
Sbjct: 70 CVPEARRAWHAGKSFWKGATDINSRSIGVEIVNPG------HEHGYQSFPEPQIEAVIAL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
DI ++ I+P VLGH+DIAP K DPG LFPW +L GIG +++P + +++
Sbjct: 124 VGDICARHGIQPWMVLGHSDIAPARKEDPGELFPWDRLAA-AGIGLYVTPFPLRTGLLMQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERI-- 256
+ +P +L YGY + IT R V+ AF+ HF PE++
Sbjct: 183 EGDSGQPVE------ALQTMLALYGYELDITGTFDLKTRQVVAAFQRHF----RPEKVDG 232
Query: 257 YADITT 262
AD +T
Sbjct: 233 VADQST 238
>gi|429210947|ref|ZP_19202113.1| AmpDh2 [Pseudomonas sp. M1]
gi|428158361|gb|EKX04908.1| AmpDh2 [Pseudomonas sp. M1]
Length = 271
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 24/233 (10%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E +R H V+Y+I+HYT + + T S+HY+I G P
Sbjct: 23 EIDREHPSRNQDSRVQYIIIHYTSADLPRSLQLLTRGEV----SAHYLI----GANPP-- 72
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+ Q+V +N RAWHAG +W+ LNS SIGI LVN G E + P+ + QI
Sbjct: 73 TIYQLVDENRRAWHAGQSEWQGRTWLNSTSIGIELVNPGYR-ETPEGRVWTPYPQGQIDA 131
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L LL KDIV + I P+++LGH+DIAP K+DPGP FPW +L D G+ W P ++
Sbjct: 132 LILLLKDIVKRQGITPEHILGHSDIAPQRKVDPGPAFPWKRLA-DAGLIPWPQPGDLAHR 190
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ + P P G F + L +GY V + + R+VI AF+ +
Sbjct: 191 --LAELNGQLPAP-----GWFQQQLARHGYAVPLNGQLDEVTRNVIAAFQMRY 236
>gi|170724255|ref|YP_001751943.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida W619]
gi|169762258|gb|ACA75574.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida W619]
Length = 271
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 120/235 (51%), Gaps = 32/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H SSHY+I + V
Sbjct: 36 DRSHPSANHDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 85
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
Q+V ++ RAWHAG +W+ LNS SIGI +VN G F +T +YP+ E QI
Sbjct: 86 YQLVDESRRAWHAGDSQWQGRTWLNSSSIGIEIVNPG-----FDTTPNGRVWYPYSEAQI 140
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+L L DIV + I P++++GH+DIAP K+DPGPLFPW +L D G+G W P+ +
Sbjct: 141 QSLIALLTDIVKRNNIDPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGVWPEPNAVA 199
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ P G + + L +GY + T + R VI AF+ F
Sbjct: 200 RQQAYFNVNPP-------SIGWYQQELARFGYAIEQTGQLDVATRHVIAAFQMRF 247
>gi|104779396|ref|YP_605894.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas entomophila L48]
gi|95108383|emb|CAK13077.1| putative N-acetylmuramoyl-L-alanine amidase [Pseudomonas
entomophila L48]
Length = 258
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H + +++++LHYT + + T H SSHY+I + V
Sbjct: 23 DRSHPSANQDSRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG +W+ LNS SIGI +VN G + ++P+ E Q+ +L
Sbjct: 73 YQLVDENRRAWHAGDSQWQGRTWLNSSSIGIEIVNQGYT-DTPNGRVWHPYSEAQVQSLI 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I P++++GH+DIAP K+DPGPLFPW +L D G+G W P+ V
Sbjct: 132 ALLKDIVKRNNIDPRHIIGHSDIAPLRKLDPGPLFPWKRL-ADAGLGVW--PEAGAVARQ 188
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
F+ P G + + L +GY + T + R VI AF+ F
Sbjct: 189 QAYFEVNPP-----SIGWYQQQLVRFGYAIEQTGTLDVSTRHVIAAFQMRF 234
>gi|254239164|ref|ZP_04932487.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126171095|gb|EAZ56606.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 255
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 127/255 (49%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVKALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAG+ W R NLN SIGI +VN + + + ++ +QI+ L L K
Sbjct: 72 AEEDRAWHAGVSGWARRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQINALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P V+G +DIA G K DPGP PW +LY + GIGAW D+ T +
Sbjct: 130 NILQRYPDMTPNNVVGLSDIAVGRKSDPGPKLPWKELY-EAGIGAWY--DDATRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RADLLEAFRLYGYALPATVDDAYFTSLLRAFQMHF----RPENFDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|398880958|ref|ZP_10635976.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM67]
gi|398191031|gb|EJM78236.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM67]
Length = 260
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 26/228 (11%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++++HYT + + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVVVHYTSASLERSLQLLT----HGEVSSHYLIGDDKN-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
+ +N RAWHAG +W+ LNS SIGI +VN G +YP+ E Q+ +L +L
Sbjct: 77 MDENQRAWHAGESEWQGRTWLNSSSIGIEIVNPGFKELPTGGRYWYPYSEAQVQSLIVLL 136
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDI + I P ++GH+DIAP K+DPGPLFPW +L + G+G W PDE V +
Sbjct: 137 KDISKRHAINPHSIIGHSDIAPFRKLDPGPLFPWKRLAAE-GLGVW--PDEQAVARQQVQ 193
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P F L GY T + R VI AF+ HF
Sbjct: 194 FDSKLP-----SVSWFQAQLARLGYATPQTGELDVATRHVIGAFQMHF 236
>gi|421528140|ref|ZP_15974712.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida S11]
gi|402214394|gb|EJT85719.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida S11]
Length = 290
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T H SSHY+I + V
Sbjct: 27 DRSHPSINQDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V ++ RAWHAG +W+ LNS SIGI +VN G + ++P+ E Q+ +L
Sbjct: 77 YQLVDESRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQVQSLI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGVW--PDATAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYAIEQTGVLDVATRHVIAAFQMRF 238
>gi|445493851|ref|ZP_21460895.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Janthinobacterium sp. HH01]
gi|444790012|gb|ELX11559.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Janthinobacterium sp. HH01]
Length = 289
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 115/219 (52%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+KY+I+HYTV + I T S+HY++++ E + +V ++ +A H
Sbjct: 42 IKYIIIHYTVSDLPRSIKILTQQEV----SAHYLLTDTEQPFF-----YTLVDESRQANH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ LNS SIGI +VN G V E + Y PF QI L LL K IV++ I
Sbjct: 93 AGLSSWKIYNQLNSASIGIEIVNPGFV-ETPQGRVYAPFPPAQIDQLILLLKQIVARHDI 151
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
KP+ +LGH DIAP K DPGP+FPW +L D G+ AW P+ V A + F+ P
Sbjct: 152 KPENILGHNDIAPQRKQDPGPMFPWKRLA-DAGLVAW--PEASRVAARLPLFQEQLP--- 205
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
D F L +GY V T + R+V+ F++ +
Sbjct: 206 --DVAWFQRKLAQHGYAVPQTGELDQATRNVMVVFQSKY 242
>gi|399910437|ref|ZP_10778751.1| negative regulator of AmpC, AmpD [Halomonas sp. KM-1]
Length = 312
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 127/260 (48%), Gaps = 34/260 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++L++HYT + A + T S+HYV+ + V Q+V +N RAWH
Sbjct: 48 VRHLVMHYTDIDEAESLAVLTGPHV----SAHYVLPLPPRDHRGQPLVYQLVDENRRAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-----VVGEKFRSTN--------YYPFDENQIHTL 140
AG WR N+N SIGI +VN G E+ N + P+ + QI L
Sbjct: 104 AGASAWRGRININDTSIGIEIVNLGPDRPYAEVERLLEENPEASVDIQWAPYPDAQIEAL 163
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L +DI+ + I P V+ H+DI+P K+DPGP FPW +LY + GIG W P++ V +
Sbjct: 164 IALSRDIIERHGIHPADVVAHSDISPTRKIDPGPRFPWRELY-EAGIGVW--PEDDAVAS 220
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPER 255
+F+ P + E L+ +GY + T + R+V+RAF+ F + R
Sbjct: 221 WQARFEAQPPA-----LSVLQEALRVWGYPLKETGELDRETRAVLRAFQMRFRPSDY--R 273
Query: 256 IYADITTEDMFWAWALVAKY 275
D T + WAL+ +Y
Sbjct: 274 GTPDAETAAIL--WALLERY 291
>gi|154252852|ref|YP_001413676.1| N-acetylmuramoyl-L-alanine amidase [Parvibaculum lavamentivorans
DS-1]
gi|154156802|gb|ABS64019.1| N-acetylmuramoyl-L-alanine amidase family 2 [Parvibaculum
lavamentivorans DS-1]
Length = 247
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 130/259 (50%), Gaps = 41/259 (15%)
Query: 16 FPEWEKNRNHYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
P E+ +++ R G +V L+LHYT + + A + S+HY++ E
Sbjct: 3 IPCTERPSPNFNERPAGRAVDILLLHYTGMESGEAAASRLCDAAAKV-SAHYLVDED--- 58
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G V ++VP+++RAWHAG+G W + ++N SIGI +VNGG P+ E
Sbjct: 59 ----GAVTRMVPEHLRAWHAGVGNWAGETDINGCSIGIEIVNGG------HDFGCPPYPE 108
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ + L +I+S+ I+ + VL H+DIAP K DPG F W +L G+G W+ P+
Sbjct: 109 AQMKAVEALSLEILSRHPIQARRVLAHSDIAPARKADPGEWFDWARLA-RAGVGVWVEPE 167
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLE----LLKAYGYNVTITNK-----RSVIRAFKT 245
+ P R+ DRG + LL YGY + + + ++V+ AF+
Sbjct: 168 PVG----------EGPVLREGDRGDTVAELQYLLADYGYGLEVLGRYDEATKAVVTAFQR 217
Query: 246 HFSANQNPERI--YADITT 262
HF P+++ AD++T
Sbjct: 218 HF----RPQKVDGVADVST 232
>gi|388544191|ref|ZP_10147480.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. M47T1]
gi|388278019|gb|EIK97592.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. M47T1]
Length = 258
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T H S+HY++ L KV
Sbjct: 23 DRSHPSVNHDSRIQFVVLHYTSASDERSLALLT----HGEVSAHYLVG------LNPPKV 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E QI +
Sbjct: 73 YQLVDESQRAWHAGESQWEGRTWLNSSSIGIEIVNPGYT-DTPNGRLWYPYSEAQIKAVE 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV ++ I+P++++GH+DIAP K DPGPLFPW +L D G+G W PD V
Sbjct: 132 ALVKDIVKRYNIEPRHIIGHSDIAPLRKQDPGPLFPWKRL-ADDGLGIW--PDAGAVARN 188
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P + + L GY + +T + R VI AF+ HF
Sbjct: 189 KARFDVNPP-----SMIWYQQQLAHLGYAIDLTGELDVTTRHVISAFQMHF 234
>gi|433774682|ref|YP_007305149.1| negative regulator of beta-lactamase expression [Mesorhizobium
australicum WSM2073]
gi|433666697|gb|AGB45773.1| negative regulator of beta-lactamase expression [Mesorhizobium
australicum WSM2073]
Length = 251
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 121/255 (47%), Gaps = 31/255 (12%)
Query: 8 MPGYVID-PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
M G++ D P E + N RD ++LHYT A+ + A + SSHY
Sbjct: 1 MSGFLPDEPSAEVRVSPNFGPRRDSQKPDMIVLHYTGMATGAAAEAWLCDPASEV-SSHY 59
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
++ E G V+Q+V ++ RAWHAG W ++NS SIGI +VN G S
Sbjct: 60 LVHEN-------GHVVQMVRESDRAWHAGQSSWFGRTDINSCSIGIEIVNPG------HS 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
Y F + QI + L K IV++ I PQ VL H+D+APG K+DPG FPW L+ G
Sbjct: 107 LGYPGFPKRQITAVIELCKGIVTRHAITPQRVLAHSDVAPGRKIDPGEKFPWAALF-KAG 165
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIR 241
+G + A VR+ + R D +L YGY V I+ R V+
Sbjct: 166 VG------HLVPAAPVRRGAALKSGDRGADVETLQSMLSLYGYGVEISGIFDDRTRIVVE 219
Query: 242 AFKTHFSANQNPERI 256
AF+ HF P RI
Sbjct: 220 AFQRHF----RPRRI 230
>gi|398354343|ref|YP_006399807.1| N-acetylmuramoyl-L-alanine amidase AmiD [Sinorhizobium fredii USDA
257]
gi|390129669|gb|AFL53050.1| N-acetylmuramoyl-L-alanine amidase AmiD [Sinorhizobium fredii USDA
257]
Length = 254
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 28/248 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + R + SSHY + E G++ Q
Sbjct: 18 NHGERADGRRPNMILLHYTGMETALSALDWLC-REESQVSSHYFVHED-------GRIDQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W+ + ++NS SIGI + N G G F E QI + L
Sbjct: 70 LVPEERRAWHAGKSFWKGEADINSCSIGIEIANAGHPG------GLPGFPEAQIEAVAEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D +++I P+ VL H+D+AP K+DPG FPW LY G+G W+ P + +
Sbjct: 124 CRDCGERWQIAPERVLAHSDVAPIRKVDPGENFPWHMLYC-RGVGHWVEPAPVGGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYA 258
+ +P G +L YGYN+ +T V+ AF+ HF Q+ A
Sbjct: 183 RGDHGQPV------GALQSMLSLYGYNIEVTGDFCERTEGVVAAFQRHF--RQSRVDGIA 234
Query: 259 DITTEDMF 266
D++T D
Sbjct: 235 DVSTIDTL 242
>gi|339485036|ref|YP_004699564.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida S16]
gi|431800154|ref|YP_007227057.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida HB3267]
gi|338835879|gb|AEJ10684.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas putida S16]
gi|430790919|gb|AGA71114.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas putida HB3267]
Length = 262
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T H SSHY+I + V
Sbjct: 27 DRSHPSINQDNRIQFVVLHYTNASLERSLALLT----HGEVSSHYLIGDGPAT------V 76
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V ++ RAWHAG +W+ LNS SIGI +VN G + ++P+ E Q+ +L
Sbjct: 77 YQLVDESRRAWHAGDSQWQGRTWLNSSSIGIEIVNPGFT-DTPNGRVWHPYSEAQVQSLI 135
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDIV + I+P++++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 136 ALLKDIVKRNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLA-DAGLGVW--PDATAVARQ 192
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
F P G + + L +GY + T R VI AF+ F
Sbjct: 193 QAYFSVNPP-----SVGWYQQELARFGYAIEQTGVLDVATRHVIAAFQMRF 238
>gi|170023999|ref|YP_001720504.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis YPIII]
gi|169750533|gb|ACA68051.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Yersinia pseudotuberculosis YPIII]
Length = 254
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 24/224 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF I T S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTALNFKDSIDVLTGPSV----SAHYLVPDPTEQTYIDAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN +IGI VN + + + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSYWDGRNNLNDTAIGIETVNLATDNDGVFT--FPPYNVTQIAAIKALASNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+F I P V+GH+DIAPG K DPG FPW LY D GIGAW D+ T + + +F
Sbjct: 133 YRFPDITPVNVVGHSDIAPGRKSDPGAAFPWKALY-DAGIGAWY--DDETKQRYLEQFLC 189
Query: 208 ARPYPRKLDRGIFLELLKAYGYN----VTITNKRSVIRAFKTHF 247
P + + LK YGY+ V+ +IRAF+ HF
Sbjct: 190 GLP-----SKNDIISKLKRYGYDTSGAVSEVGYNQLIRAFQLHF 228
>gi|66043535|ref|YP_233376.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
syringae B728a]
gi|63254242|gb|AAY35338.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. syringae B728a]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + H + T H S+HY+I + + ++V +N RAWH
Sbjct: 59 AQYVVMHYTSTSLEHSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDENARAWH 109
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 110 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 168
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 169 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLATNLPSIT 225
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 226 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 259
>gi|410622894|ref|ZP_11333715.1| hypothetical protein GPAL_2228 [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410157569|dbj|GAC29089.1| hypothetical protein GPAL_2228 [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 813
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 128/270 (47%), Gaps = 43/270 (15%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLP--GGKVIQIVPDNMRA 91
VK L++H+T N+ + A A SSHY+I + + P KV Q+V +N RA
Sbjct: 16 VKSLVMHFTAVNYQESVAALV---AEGSVSSHYLIPKADDPSYPYKDIKVFQLVDENKRA 72
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVV-------------------GEKFRSTNYYP- 131
WHAGI W+ +N SIGI +VN EK R YP
Sbjct: 73 WHAGISYWQGRSGINDHSIGIEVVNMPFCQEDNPADASLAAIMPQIMGAEKNRDLCVYPE 132
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+E QI L L K I+++ I+P V+GH+DIAP K DPGP FPW +LY + GIGAW
Sbjct: 133 FEEKQIQLLIKLSKQILARNPDIEPTAVVGHSDIAPSRKNDPGPKFPWYRLYKE-GIGAW 191
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKR-----SVIRAFKT 245
+ +T + F P + + L AYGY++ T + + AF+
Sbjct: 192 YDNENLTHHWLA--FNQTLP-----SLALIQKALSAYGYDLAATGRMDQQTIDTLAAFQM 244
Query: 246 HFSANQNPERIYADITTEDMFWAWALVAKY 275
HF P ++ ++ + +AL+ KY
Sbjct: 245 HFV----PWKVTGELDNQTAAAVFALLEKY 270
>gi|426406992|ref|YP_007027091.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. UW4]
gi|426265209|gb|AFY17286.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. UW4]
Length = 259
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR V+++++HYT + + T SSHY+I + +G + ++
Sbjct: 30 NYDSR----VQFVVVHYTNASMERSLQLLTRGEV----SSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDENVRAWHAGESEWDGRTWLNSSSIGIEIVNPG-----FKDTPNGRVWYPYSEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + IKP+ ++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IVLLKDISKRQGIKPRDIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGIW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P F L GY T + R VI AF+ HF
Sbjct: 189 QQMLFADQLP-----SISWFQAQLARLGYASPQTGELDVATRHVIAAFQMHF 235
>gi|399006211|ref|ZP_10708739.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
gi|398122670|gb|EJM12256.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
Length = 254
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 29/254 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF + A T+ A S+HY+I + ++ Y G ++ +V +
Sbjct: 19 VRFLVLHYTALNFEASVKALTTGAA----SAHYLIPALQDPTYQAAGFQEQRIFNLVAEE 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG+ W LN SIGI +VN V F +Y + +Q+ L L +I
Sbjct: 75 DRAWHAGVSDWAGRSGLNDTSIGIEIVNEATDVNGVFTFPDY---ERSQVEALKQLALNI 131
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + P+ V+GH+DIA G K DPGP PW +LY GIGAW DE T + V++F+
Sbjct: 132 LQRYPDLSPKNVVGHSDIAVGRKSDPGPKLPWKELY-KAGIGAWY--DEPTKKKYVQQFR 188
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITT 262
A P +R L+ YGY V +S++RAF+ HF P+ +
Sbjct: 189 AAG-LP---ERAEVLKAFATYGYGVPAQATDDFFQSLVRAFQMHF----RPKNYTGKLDV 240
Query: 263 EDMFWAWALVAKYG 276
E +AL KY
Sbjct: 241 ETCAILYALNEKYA 254
>gi|262065890|ref|ZP_06025502.1| N-acetylmuramoyl-L-alanine amidase family protein [Fusobacterium
periodonticum ATCC 33693]
gi|291380370|gb|EFE87888.1| N-acetylmuramoyl-L-alanine amidase family protein [Fusobacterium
periodonticum ATCC 33693]
Length = 299
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT N + I SNR S+H+++ +++ + +VP + RAWH
Sbjct: 64 IQFVVVHYTATNNEYSIKELISNRV----SAHFLVLDEDD-----NTIYNLVPLDQRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-------FDENQIHTLGLLGKD 146
AG +R NLN SIGI +V+ G+ ++ N YP + QI + + K
Sbjct: 115 AGTSSFRGRTNLNDTSIGIEIVSDGIARDRRNDPNRYPPYDAYLEYKPIQIEKVAQIIKY 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ +++ I + ++ H+DIAP K DPG FPW +LY Y IGAW + + KF
Sbjct: 175 VSARYNIPAKNIVAHSDIAPSRKKDPGAKFPWKELYEKYDIGAWYNESDKQAFMDEEKFN 234
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
K E L+ YGY + TN+ + V+ AF+ HF NP+ D+
Sbjct: 235 ATSISDIK-------EELRKYGYEINRTNEWDRDSKDVVYAFQLHF----NPKNATGDMD 283
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 284 LETFAILKALNKKY 297
>gi|399003258|ref|ZP_10705924.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM18]
gi|398123101|gb|EJM12672.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM18]
Length = 259
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR ++++++HYT + + T H SSHY+I + E + ++
Sbjct: 30 NHDSR----IQFVVMHYTSASLEDSLQLLT----HGEVSSHYLIGDDEH-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E QI ++
Sbjct: 77 MDENLRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FQDTPTGRLWYPYSEAQIQSM 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IFLLKDISKRQGISPRHIIGHSDIAPMRKLDPGPLFPWKRLAAE-GLGIW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY T + R+V+ AF+ HF
Sbjct: 189 QQAQFAVQLP-----SISWFQAQLARLGYATPQTGELDVATRNVLAAFQLHF 235
>gi|254500718|ref|ZP_05112869.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia
alexandrii DFL-11]
gi|222436789|gb|EEE43468.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia
alexandrii DFL-11]
Length = 263
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 123/261 (47%), Gaps = 32/261 (12%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH D + LILHYT + + R+ S+HYV+ E G ++
Sbjct: 28 NHGDRAAEAPIDMLILHYTGMQTGEEALQRLCDPRSEV--SAHYVVQED-------GSIL 78
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ RAWHAG W+ +R++NS SIG+ +VN G Y F E QI +
Sbjct: 79 QCVPEARRAWHAGKSFWKGERDINSRSIGVEMVNPG------HEFGYRSFAEPQIEAVIA 132
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L D+ ++ +I P VL H+DIAP K DPG LFPW KL G+G ++ P+ + +
Sbjct: 133 LCADVCARHQIHPWMVLAHSDIAPSRKEDPGELFPWDKLAA-AGVGHYVVPEPIGSGLFM 191
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIY 257
++ + +P +L YGY V I + V+ AF+ HF PE++
Sbjct: 192 QEGEEGQPVE------ALQSMLALYGYEVDINGRFDRRTSEVVTAFQRHF----RPEKVD 241
Query: 258 ADITTEDMFWAWALVAKYGSM 278
+ + L++K S+
Sbjct: 242 GVVDASTIETLHNLLSKLPSL 262
>gi|398900940|ref|ZP_10649927.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM50]
gi|398180769|gb|EJM68347.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM50]
Length = 259
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR ++++++HYT + + T H SSHY+IS+ + + ++
Sbjct: 30 NHDSR----IQFVVMHYTSASLETSLQLLT----HGEVSSHYLISDDKR-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F T +YP+ E QI ++
Sbjct: 77 MDENFRAWHAGESEWQGRTWLNSSSIGIEIVNQG-----FEDTPNGRLWYPYSEAQIQSM 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IFLLKDISKRQGISPRHIIGHSDIAPMRKLDPGPLFPWKRLAAE-GLGIW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L +GY T + R+V+ AF+ HF
Sbjct: 189 QQAQFAVQLP-----SISWFQGQLARFGYATPQTGELDVETRNVLAAFQLHF 235
>gi|289765051|ref|ZP_06524429.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp. D11]
gi|289716606|gb|EFD80618.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp. D11]
Length = 299
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++ILHYT + I TS+R SSH++I +++ K+ +VP RAWH
Sbjct: 64 VQFIILHYTATDNLGSIKELTSSRV----SSHFLILDEDD-----NKIYSLVPLEQRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG+ +R N+N S+GI +VN G+ E N Y+P+D QI + + K
Sbjct: 115 AGVSAFRGRTNINDTSVGIEIVNDGIAKEYRSDPNPYHPYDHYVDYKPIQIEKVAQIIKY 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 175 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 228
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 229 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 283
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 284 LETFAILKALNKKY 297
>gi|424882480|ref|ZP_18306112.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WU95]
gi|392518843|gb|EIW43575.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. trifolii WU95]
Length = 253
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 121/250 (48%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT A + RA + SSHY + E G+V+Q
Sbjct: 18 NHGERADGRHPDMILLHYTGMPTADGALDWLC-RAESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEMRRAWHAGKSSWHGESDINSVSIGIEIANAGHPG----GLPDYP--KGQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW L+ GIG W+ P +T +
Sbjct: 124 CRDCVKRWSITPERVLGHSDVAPIRKVDPGEKFPWAALH-QAGIGHWVEPAPITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PE I
Sbjct: 183 RGDTGQPVE------ALQSMLSLYGYGTEITGEFSEKTAGDVEAFQRHF----RPELIDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|447919290|ref|YP_007399858.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas poae RE*1-1-14]
gi|445203153|gb|AGE28362.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas poae RE*1-1-14]
Length = 258
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+ NH V+++I+HYT N + T H SSHY+I + +
Sbjct: 23 DTNHPSVNHDNRVQFVIVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----ATI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWAGRTWLNSSSIGIEIVNPGY-KDTPTGRLWYPYSEAQVKSLV 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W PD V
Sbjct: 133 VLLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRL-ANEGLGLW--PDAKAVARF 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
+++ P F E L GY T + R VI AF+ HF A+
Sbjct: 190 QQQYATQLP-----STTWFQEELAKLGYPTPQTGELDVATRHVISAFQMHFRAS 238
>gi|190892596|ref|YP_001979138.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium etli CIAT 652]
gi|190697875|gb|ACE91960.1| probable N-acetylmuramoyl-L-alanine amidase protein [Rhizobium etli
CIAT 652]
Length = 224
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 111/217 (51%), Gaps = 31/217 (14%)
Query: 57 RAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN 116
RA + SSHY + E G+VIQ+VP+ RAWHAG W R+ ++NS+SIGI + N
Sbjct: 21 RAESQVSSHYFVHEN-------GEVIQLVPEGRRAWHAGKSSWHRESDINSLSIGIEIAN 73
Query: 117 GGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLF 176
G G YP + QI + L +D V ++ I P+ VLGH+D+AP K+DPG F
Sbjct: 74 AGHPG----GLPDYP--KEQIAAVIELCRDCVKRWSIAPERVLGHSDVAPVRKVDPGEKF 127
Query: 177 PWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK 236
PW L+ G+G W+ P ++T ++ +P +L YGY IT +
Sbjct: 128 PWAALH-RAGVGHWVEPAKITGGRFFQRGDAGQPVE------ALQSMLSLYGYGTDITGE 180
Query: 237 RSV-----IRAFKTHFSANQNPERI--YADITTEDMF 266
S + AF+ HF PER+ AD +T D
Sbjct: 181 FSEGTAGDVEAFQRHF----RPERVDGIADFSTIDTL 213
>gi|217979650|ref|YP_002363797.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocella silvestris BL2]
gi|217505026|gb|ACK52435.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocella silvestris BL2]
Length = 255
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 121/233 (51%), Gaps = 32/233 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + + G + LILHYT A + A + S+HYV+ +P G+++
Sbjct: 19 NHGERKGGKTPNSLILHYTGVPTGEAAVALLCDPASEV-SAHYVV-------MPDGEIML 70
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG G W + ++N +SIGI + + G + R+ + YP E QI ++ L
Sbjct: 71 LVPEARRAWHAGRGIWAGETDMNDVSIGIEIAHPG--HKNGRAAHPYP--EAQIASVTAL 126
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
DIV +++I P VL H+DIAP K+DPG FPW L GIG +++P ++
Sbjct: 127 CGDIVERWRIAPDRVLAHSDIAPDRKIDPGEFFPWDWL-AHAGIGHYVAPCPIS------ 179
Query: 204 KFKPARPYPRKLDRGIFLE----LLKAYGYNVTITNK-----RSVIRAFKTHF 247
A P RG +E +L AYGY ++ + VIRAF+ HF
Sbjct: 180 ----AGPRLDHNSRGAEVEELQAMLGAYGYGAPVSGAYDARTQCVIRAFQRHF 228
>gi|358465968|ref|ZP_09175845.1| hypothetical protein HMPREF9093_00306 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069532|gb|EHI79433.1| hypothetical protein HMPREF9093_00306 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 297
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 28/228 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT N + I SNR S+H+++ +++ K+ +VP + RAWH
Sbjct: 62 IQFIVVHYTATNNEYSIKELISNRV----SAHFLVLDEDD-----NKIYNLVPLDQRAWH 112
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-------FDENQIHTLGLLGKD 146
AG +R NLN SIGI +V+ G+ ++ N YP + QI + + K
Sbjct: 113 AGASSFRGRTNLNDTSIGIEIVSDGIARDRRNDPNRYPPYDAYLEYKPIQIEKVAQIIKY 172
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ +++ I + ++ H+DIAP K DPG FPW +LY Y IGAW + + KF
Sbjct: 173 VSARYNIPARNIIAHSDIAPSRKKDPGAKFPWKELYEKYDIGAWYNESDKQAFMDEEKFN 232
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSA 249
K E L+ YGY + TN+ + V+ AF+ HF+A
Sbjct: 233 ATSISDIK-------EELRKYGYEINRTNEWDRDSKDVVYAFQLHFNA 273
>gi|389683523|ref|ZP_10174855.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
chlororaphis O6]
gi|388553036|gb|EIM16297.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
chlororaphis O6]
Length = 254
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 29/254 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF + A T+ A S+HY+I + ++ Y G ++ +V +
Sbjct: 19 VRFLVLHYTALNFEASVKALTTGAA----STHYLIPAVQDPTYQAAGFQEQRIFNLVAEA 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG+ W LN SIGI +VN V F +Y + +Q+ L L +I
Sbjct: 75 DRAWHAGVSDWAGRSGLNDTSIGIEIVNEATDVNGVFTFPDY---ERSQVEALKQLALNI 131
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + P+ V+GH+DIA G K DPGP PW +LY GIGAW DE T + V++F+
Sbjct: 132 LQRYPDMSPKNVVGHSDIAVGRKSDPGPKLPWKELY-KAGIGAWY--DEPTKKKYVQQFR 188
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITT 262
A P +R L+ YGY V +S++RAF+ HF P+ +
Sbjct: 189 TAG-LP---ERAEVLKAFATYGYGVPAQATDDFFQSLVRAFQMHF----RPKNYTGKLDV 240
Query: 263 EDMFWAWALVAKYG 276
E +AL KY
Sbjct: 241 ETCAILYALNEKYA 254
>gi|418401188|ref|ZP_12974720.1| N-acetylmuramoyl-L-alanine amidase [Sinorhizobium meliloti
CCNWSX0020]
gi|359504845|gb|EHK77375.1| N-acetylmuramoyl-L-alanine amidase [Sinorhizobium meliloti
CCNWSX0020]
Length = 254
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 129/275 (46%), Gaps = 42/275 (15%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M S PG + P P NH + G +ILHYT A + R +
Sbjct: 1 MTSETCDFPGAHLVPSP------NHGERAGGRRPDMIILHYTGMETAASALDWLC-REES 53
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S HY + E+ G++ Q+VP+ RAWHAG G W+ + ++NS SIGI + N G
Sbjct: 54 QVSCHYFVDEE-------GRIAQLVPEERRAWHAGKGVWKGETDINSCSIGIEIANAGHP 106
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
G F E QI + L D +++I P+ VL H+DIAP K+DPG FPW
Sbjct: 107 G------GLPDFPEAQIEAVAELCLDCGERWQITPERVLAHSDIAPIRKVDPGENFPWDV 160
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK 236
L+ G+G W+ P A VR + + ++ D G +E L++ YGY V IT
Sbjct: 161 LF-RRGVGHWVEP------APVRGGR----FFQRGDSGQPVEALQSMLLLYGYGVEITGD 209
Query: 237 -----RSVIRAFKTHFSANQNPERIYADITTEDMF 266
V+ AF+ HF Q+ AD++T D
Sbjct: 210 FCARTEGVVAAFQRHF--RQSRVDGIADVSTIDTL 242
>gi|218460632|ref|ZP_03500723.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium etli Kim 5]
Length = 253
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 124/264 (46%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + DG ++LHYT + A + SSHY +
Sbjct: 10 GACVRPSP------NHGERADGRRPDMILLHYTGMPTPDGALDWLCC-AESQVSSHYFVH 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG W + ++NS+SIGI + N G G
Sbjct: 63 EN-------GEVIQLVPEGRRAWHAGKSSWHGESDINSLSIGIEIANVGHPG----GLPD 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
YP + QI + L +D V ++ I P+ VLGH+D+AP K+DPG FPW +L+ GIG
Sbjct: 112 YP--KEQIAAVIELCRDCVKRWSIAPERVLGHSDVAPIRKVDPGEKFPWAELHR-AGIGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFK 244
W+ P +T ++ +P +L YGY IT S + AF+
Sbjct: 169 WVEPATITGGRFFQRGDSGQPVE------ALQSMLSLYGYGTEITGHFSEKTAGDVEAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF PERI AD +T D
Sbjct: 223 RHF----RPERIDGIADFSTIDTL 242
>gi|126728940|ref|ZP_01744755.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Sagittula stellata
E-37]
gi|126710870|gb|EBA09921.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Sagittula stellata
E-37]
Length = 227
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 39/231 (16%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N D RD + ++LHYT A + A + S+HYV++E
Sbjct: 5 PVWHPSPNVGDRRDCAAPDMIVLHYTAMKTAEAARDRLCDPAAQV-SAHYVVAED----- 58
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G+ Q+V + RAWHAG G W R++NS SIGI + N G PF E Q
Sbjct: 59 --GRTWQLVRETHRAWHAGAGAWGPVRDVNSHSIGIEIANTGAA----------PFPERQ 106
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
+ + L + ++++++I P+ V+GH+D APG K+DPGP F W +L L G+ W PD+
Sbjct: 107 MVVVENLLRRVMARWRIAPERVVGHSDTAPGRKIDPGPRFDWRRLAL-QGVAVW--PDDT 163
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
D G FL + +GY+V + V+ AF+ F
Sbjct: 164 G------------------DPGQFLHDARRFGYDVDAVGEDVVLNAFRMRF 196
>gi|116253061|ref|YP_768899.1| signalling and peptidoglycan binding protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115257709|emb|CAK08807.1| putative signalling and peptidoglycan binding protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 253
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N + +G ++LHYT A + RA + SSHY + E G+V+Q
Sbjct: 18 NQGERAEGRRPDMILLHYTGMPTADGALDWLC-RAESQVSSHYFVHEN-------GEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEMRRAWHAGKSSWHGETDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D V ++ I P+ VLGH+D+AP K+DPG FPW L+ GIG W+ P +T +
Sbjct: 124 CRDCVKRWSITPERVLGHSDVAPIRKVDPGEKFPWAALH-QAGIGHWVEPATITGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF PER+
Sbjct: 183 RGDTGQPVE------ALQSMLSLYGYGTEITGEFSEKTAGDVEAFQRHF----RPERVDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|398989635|ref|ZP_10692871.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM24]
gi|399012742|ref|ZP_10715060.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM16]
gi|398114986|gb|EJM04781.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM16]
gi|398147101|gb|EJM35819.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM24]
Length = 260
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 34/232 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR ++++++HYT + + T H SSHY+I + G V ++
Sbjct: 30 NYDSR----IQFVVVHYTSASLERSLQLLT----HGEVSSHYLIGDDNS-----GTVYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E QI +L
Sbjct: 77 MDENQRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FKDTPSGRLWYPYSEAQIQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IALLKDISKRNGISPRHIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGVW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P F L GY+ T + R V+ AF+ HF
Sbjct: 189 QQMLFNSSE-LP---SISWFQAQLAHLGYDTPQTGELDVATRHVLAAFQMHF 236
>gi|340754166|ref|ZP_08690930.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
2_1_31]
gi|340566604|gb|EEO38745.2| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
2_1_31]
Length = 298
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT N + I SNR S+H+++ +++ + +VP + RAWH
Sbjct: 63 IQFVVVHYTATNNEYSIKELISNRV----SAHFLVLDEDD-----NMIYNLVPLDQRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-------FDENQIHTLGLLGKD 146
AG +R NLN SIGI +V+ G+ ++ N YP + QI + + K
Sbjct: 114 AGASSFRGRTNLNDTSIGIEIVSDGIARDRRNDPNRYPPYDAYLEYKPIQIEKVAQIIKY 173
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ +++ I + ++ H+DIAP K DPG FPW +LY Y IGAW + + KF
Sbjct: 174 VAARYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYEKYDIGAWYNESDKQAFMNEEKFN 233
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
K E L+ YGY + TN+ R V+ AF+ HF NP+ ++
Sbjct: 234 ATSISDIK-------EELRKYGYEINRTNEWDRDSRDVVYAFQLHF----NPKNATGNMD 282
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 283 LETFAILKALNKKY 296
>gi|422315938|ref|ZP_16397350.1| hypothetical protein FPOG_02074 [Fusobacterium periodonticum D10]
gi|404591743|gb|EKA93789.1| hypothetical protein FPOG_02074 [Fusobacterium periodonticum D10]
Length = 298
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT N + I SNR S+H+++ +++ + +VP + RAWH
Sbjct: 63 IQFVVVHYTATNNEYSIKELISNRV----SAHFLVLDEDD-----NMIYNLVPLDQRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-------FDENQIHTLGLLGKD 146
AG +R NLN SIGI +V+ G+ ++ N YP + QI + + K
Sbjct: 114 AGASSFRGRTNLNDTSIGIEIVSDGIARDRRNDPNRYPPYDAYLEYKPIQIEKVAQIIKY 173
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ +++ I + ++ H+DIAP K DPG FPW +LY Y IGAW + + KF
Sbjct: 174 VAARYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYEKYDIGAWYNESDKQAFMNEEKFN 233
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
K E L+ YGY + TN+ R V+ AF+ HF NP+ ++
Sbjct: 234 ATSISDIK-------EELRKYGYEINRTNEWDRDSRDVVYAFQLHF----NPKNATGNMD 282
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 283 LETFAILKALNKKY 296
>gi|77456277|ref|YP_345782.1| AmpD [Pseudomonas fluorescens Pf0-1]
gi|77380280|gb|ABA71793.1| putative membrane-bound N-acetylmuramoyl-L-alanine amidase
[Pseudomonas fluorescens Pf0-1]
Length = 259
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++I+HYT + + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVIVHYTSASLERSLQLLT----HGEVSSHYLIGDDKS-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E Q+ +L
Sbjct: 77 MDENLRAWHAGESEWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEAQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IVLLKDISKRQGISPRHIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGLW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY+ T + R V+ AF+ H+
Sbjct: 189 QQAQFDAELP-----SITWFQSQLARLGYSTPQTGELDVATRHVLAAFQMHY 235
>gi|334316883|ref|YP_004549502.1| N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD
[Sinorhizobium meliloti AK83]
gi|384530072|ref|YP_005714160.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sinorhizobium meliloti BL225C]
gi|384535582|ref|YP_005719667.1| probabable N-acetylmuramoyl-L-alanine amidase [Sinorhizobium
meliloti SM11]
gi|407721221|ref|YP_006840883.1| amidase (AMPD protein) [Sinorhizobium meliloti Rm41]
gi|433613971|ref|YP_007190769.1| Negative regulator of beta-lactamase expression [Sinorhizobium
meliloti GR4]
gi|333812248|gb|AEG04917.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sinorhizobium meliloti BL225C]
gi|334095877|gb|AEG53888.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sinorhizobium meliloti AK83]
gi|336032474|gb|AEH78406.1| probabable N-acetylmuramoyl-L-alanine amidase [Sinorhizobium
meliloti SM11]
gi|407319453|emb|CCM68057.1| amidase (AMPD protein) [Sinorhizobium meliloti Rm41]
gi|429552161|gb|AGA07170.1| Negative regulator of beta-lactamase expression [Sinorhizobium
meliloti GR4]
Length = 254
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 129/275 (46%), Gaps = 42/275 (15%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M S PG + P P NH + G +ILHYT A + R +
Sbjct: 1 MTSETCDFPGAHLVPSP------NHGERAGGRRPDMIILHYTGMETAASALDWLC-REES 53
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S HY + E+ G++ Q+VP+ RAWHAG G W+ + ++NS SIGI + N G
Sbjct: 54 QVSCHYFVDEE-------GRIAQLVPEERRAWHAGKGVWKGETDINSCSIGIEIANAGHP 106
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
G F E QI + L D +++I P+ VL H+DIAP K+DPG FPW
Sbjct: 107 G------GLPDFPEAQIEAVAELCLDCGERWQITPERVLAHSDIAPIRKVDPGENFPWDV 160
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK 236
L+ G+G W+ P A VR + + ++ D G +E L++ YGY V IT
Sbjct: 161 LF-RRGVGHWVEP------APVRGGR----FFQRGDSGQPVEALQSMLLLYGYGVEITGD 209
Query: 237 -----RSVIRAFKTHFSANQNPERIYADITTEDMF 266
V+ AF+ HF Q+ AD++T D
Sbjct: 210 FCARTEGVVAAFQRHF--RQSRVDGIADVSTIDTL 242
>gi|229587664|ref|YP_002869783.1| putative membrane-bound N-acetylmuramoyl-L-alanine amidase
[Pseudomonas fluorescens SBW25]
gi|229359530|emb|CAY46371.1| putative membrane-bound N-acetylmuramoyl-L-alanine amidase
[Pseudomonas fluorescens SBW25]
Length = 270
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+ NH V+++++HYT N + T H SSHY+I + G +
Sbjct: 23 DTNHPSVNHDNRVQFVVVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----GTI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGY-KDTPTGRLWYPYSEAQVKSLV 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W PD V
Sbjct: 133 VLLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGVW--PDAQAVARF 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
++ P F E L GY T + R VI AF+ HF
Sbjct: 190 QVQYATELP-----SITWFQEQLAHLGYQTPQTGELDVATRHVIAAFQMHF 235
>gi|404402747|ref|ZP_10994331.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fuscovaginae
UPB0736]
Length = 260
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR +++I+HYT N + + T H SSHY++ + L ++
Sbjct: 30 NYDSR----AQFVIVHYTSANRENSLRLLT----HGQVSSHYLVGDDNPATL-----YKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V ++ RAWHAG +W+ LNS SIGI +VN G FR T +YP+ E QI L
Sbjct: 77 VDESQRAWHAGESEWQGRTWLNSSSIGIEIVNPG-----FRDTPAGRVWYPYSEAQIQAL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDIV + I+P+ V+GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 132 IVLLKDIVKRNHIEPRNVIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGMW--PDEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVT------ITNKRSVIRAFKTHF 247
+ + P F + L+ GY T + + AF+ HF
Sbjct: 189 QQQVYAYQLP-----SASWFQQQLRYLGYTATPQTGEWDAGTQHTLAAFQMHF 236
>gi|398841266|ref|ZP_10598489.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM102]
gi|398108774|gb|EJL98723.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM102]
Length = 275
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR ++++++HYT + + T H SSHY+IS+ + + ++
Sbjct: 46 NHDSR----IQFVVMHYTSASLETSLQLLT----HGEVSSHYLISDDKR-----ATIYKL 92
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F T +YP+ E QI ++
Sbjct: 93 MDENFRAWHAGESEWQGRTWLNSSSIGIEIVNQG-----FEDTPTGRLWYPYSEAQIQSM 147
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 148 IFLLKDISKRQGISPRHIIGHSDIAPMRKLDPGPLFPWKRLAAE-GLGIW--PNEQAVAR 204
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY T + R+V+ AF+ HF
Sbjct: 205 QQAQFAVQLP-----SISWFQAQLARLGYATPQTGELDVETRNVLAAFQLHF 251
>gi|398976339|ref|ZP_10686245.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM25]
gi|398139175|gb|EJM28176.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM25]
Length = 259
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++DSR V+++I+HYT + + T H SSHY+I + + + ++
Sbjct: 30 NHDSR----VQFVIVHYTSASLERSLQLLT----HGEVSSHYLIGDDKN-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N+RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E Q+ +L
Sbjct: 77 MDENLRAWHAGESEWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEAQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IVLLKDISKRQGISPRHIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGLW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY+ T + R V+ AF+ H+
Sbjct: 189 QQAQFDAELP-----SITWFQSQLARLGYSTPQTGELDVATRHVLAAFQMHY 235
>gi|397688702|ref|YP_006526021.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri DSM 10701]
gi|395810258|gb|AFN79663.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri DSM 10701]
Length = 258
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 116/226 (51%), Gaps = 28/226 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR ++++LHYT + A + ++ SSHY+I E + ++V
Sbjct: 32 DSR----AQFIVLHYTSADLARSLELLEQDQV----SSHYLIGESPPT------IYRLVD 77
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG +WR LNS SIGI LVN G V E + +YP+ E QI L L KD
Sbjct: 78 EGRRAWHAGESEWRGRTWLNSSSIGIELVNLGYV-EGPQGRLWYPYSEQQIDALIELLKD 136
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I+++ + P+ ++GH+DIAP K+DPGPLFPW +L D G+ W PD V F
Sbjct: 137 IMARHGLGPEAIVGHSDIAPQRKVDPGPLFPWKRLA-DAGLVPW--PDAAEVARQQASFA 193
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
P D F + L+ GY V + R+VI AF+ +
Sbjct: 194 IELP-----DVAWFQDQLRMQGYRVPLHGHLDLETRNVIAAFQMKY 234
>gi|312958186|ref|ZP_07772709.1| N-acetyl-anhydromuramyl-L-alanine amidase [Pseudomonas fluorescens
WH6]
gi|311287617|gb|EFQ66175.1| N-acetyl-anhydromuramyl-L-alanine amidase [Pseudomonas fluorescens
WH6]
Length = 281
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 31/223 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++++HYT N + T H S+HY+I + G + ++V ++ RAWH
Sbjct: 35 VQFVVVHYTSTNLERSLALLT----HGQVSAHYLIGDDAG-----ATIYKLVDESQRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G +R T +YP+ E Q+ L +L KDI
Sbjct: 86 AGESEWMGRTWLNSSSIGIEIVNPG-----YRDTPTGRVWYPYSEAQVKALVVLLKDISK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+ I P+ ++GH+DIAP K+DPGPLFPW +L D G+G W P+ TV + ++
Sbjct: 141 RNGIDPRNIIGHSDIAPLRKLDPGPLFPWKRL-ADEGLGVW--PNAQTVTRLQAQYAAEP 197
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P F E L GY T + R VI AF+ F
Sbjct: 198 P-----SASWFQEELAHLGYPTPQTGELDVATRHVIAAFQMRF 235
>gi|188026401|ref|ZP_02961939.2| hypothetical protein PROSTU_04022 [Providencia stuartii ATCC 25827]
gi|188019930|gb|EDU57970.1| N-acetylmuramoyl-L-alanine amidase [Providencia stuartii ATCC
25827]
Length = 246
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 17/222 (7%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHY+I + V+Q+VP++++AWHAG W NLN SIGI +VN G +
Sbjct: 17 SSHYLIPSTPSQENNKPVVLQLVPESLKAWHAGDSHWLNSSNLNDTSIGIEIVNSGFSTD 76
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ + PF+++QI L L KDI+ ++ I Q ++GH+DIAP K DPG FPW +L
Sbjct: 77 QNGRKIWAPFNQSQILALIPLVKDIMQRYNIPAQNIIGHSDIAPLRKEDPGRAFPWEELA 136
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGY-NVTITNK----- 236
GIGAW PD TV+ + P + + + L+ YGY + ++ +
Sbjct: 137 -KQGIGAW--PDAATVKGYLSNRGKDEPS----NVLLLQKALRFYGYAEIPLSGELDGQT 189
Query: 237 RSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM 278
+ +I AF+ HF P I E A AL+ KY M
Sbjct: 190 QQIISAFQMHF----RPRNIDGKADAETEAIALALIEKYRDM 227
>gi|440738567|ref|ZP_20918095.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens
BRIP34879]
gi|440380927|gb|ELQ17479.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens
BRIP34879]
Length = 258
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+ NH V+++I+HYT N + T H SSHY+I + +
Sbjct: 23 DTNHPSVNHDNRVQFVIVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----ATI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWAGRTWLNSSSIGIEIVNPGY-KDTPTGRLWYPYSEAQVKSLV 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W PD V
Sbjct: 133 VLLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRL-ANEGLGLW--PDAKAVARF 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
+++ P F E L GY T + R VI AF+ HF A+
Sbjct: 190 QQQYATQLP-----SITWFQEELAKLGYPTPQTGELDVATRHVISAFQMHFRAS 238
>gi|398851757|ref|ZP_10608437.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM80]
gi|398246209|gb|EJN31706.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM80]
Length = 260
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 34/232 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR ++++I+HYT + + T H SSHY+I + + V ++
Sbjct: 30 NYDSR----IQFVIVHYTSTSLERSLQLLT----HGEVSSHYLIGDDKS-----ATVYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ +N RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E QI +L
Sbjct: 77 MDENQRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRLWYPYSEAQIQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W P+E V
Sbjct: 132 IALLKDISKRNGISPRHIIGHSDIAPLRKLDPGPLFPWQRLAAE-GLGVW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P F L GY+ T + R V+ AF+ HF
Sbjct: 189 QQAVFNSSE-LP---SVSWFQAQLAHLGYDTPQTGELDVATRHVLAAFQMHF 236
>gi|398997315|ref|ZP_10700143.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM21]
gi|398124410|gb|EJM13922.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM21]
Length = 259
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YDSR +++++LHYT + + T H SSHY+I + +G + ++
Sbjct: 30 NYDSR----IQFVVLHYTNASLERSLQLLT----HGEVSSHYLIGDDKG-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
+ + RAWHAG +W+ LNS SIGI +VN G F+ T +YP+ E+Q+ +L
Sbjct: 77 MDEQYRAWHAGESEWQGRTWLNSSSIGIEIVNPG-----FKDTPTGRVWYPYSEDQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L KDI +++ I P+ ++GH+DIAP K+DPGPLFPW +L + GIG W P+E V
Sbjct: 132 IFLLKDISTRYNIHPRAIIGHSDIAPMRKLDPGPLFPWKRLAAE-GIGVW--PNEQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+F P F L GY+ T + R V+ AF+ HF
Sbjct: 189 QQAQFAAQLP-----SISWFQGQLAKLGYDTPQTGELDVATRHVLAAFQLHF 235
>gi|15965941|ref|NP_386294.1| amidase (AMPD protein) [Sinorhizobium meliloti 1021]
gi|15075210|emb|CAC46767.1| Probable N-acetylmuramoyl-L-alanine amidase [Sinorhizobium meliloti
1021]
Length = 263
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 129/275 (46%), Gaps = 42/275 (15%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M S PG + P P NH + G +ILHYT A + R +
Sbjct: 1 MTSETCDFPGAHLVPSP------NHGERAGGRRPDMIILHYTGMETAASALDWLC-REES 53
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
S HY + E+ G++ Q+VP+ RAWHAG G W+ + ++NS SIGI + N G
Sbjct: 54 QVSCHYFVDEE-------GRIAQLVPEERRAWHAGKGVWKGETDINSCSIGIEIANAGHP 106
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
G F E QI + L D +++I P+ VL H+DIAP K+DPG FPW
Sbjct: 107 G------GLPDFPEAQIEAVAELCLDCGERWQITPERVLAHSDIAPIRKVDPGENFPWDV 160
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK 236
L+ G+G W+ P A VR + + ++ D G +E L++ YGY V IT
Sbjct: 161 LF-RRGVGHWVEP------APVRGGR----FFQRGDSGQPVEALQSMLLLYGYGVEITGD 209
Query: 237 -----RSVIRAFKTHFSANQNPERIYADITTEDMF 266
V+ AF+ HF Q+ AD++T D
Sbjct: 210 FCARTEGVVAAFQRHF--RQSRVDGIADVSTIDTL 242
>gi|146302671|ref|YP_001197262.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium johnsoniae
UW101]
gi|146157089|gb|ABQ07943.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Flavobacterium
johnsoniae UW101]
Length = 301
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I FT R SSHY+ISE GKV+Q++ D +RAWHA
Sbjct: 101 FVIIHHTAQDSLQQTINTFTKTRTQ--VSSHYIISE-------NGKVVQMLNDYLRAWHA 151
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G W ++ +LNS SIGI L N G + PF E QI +L L + + I
Sbjct: 152 GNSTWGKNTDLNSSSIGIELDNNG----------FKPFTEAQISSLVALLTKLKKDYNIP 201
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
Q LGH DIAPG K DP LFPW K + G G W PD + EA P+ K
Sbjct: 202 TQNFLGHADIAPGRKQDPSALFPW-KTLAEKGFGIW--PDAVLEEA---------PFDFK 249
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
++ L+ GYN N + I+AFK H+
Sbjct: 250 IEPA-----LRIIGYNT--KNLSAAIQAFKLHY 275
>gi|410647707|ref|ZP_11358127.1| hypothetical protein GAGA_3693 [Glaciecola agarilytica NO2]
gi|410132803|dbj|GAC06526.1| hypothetical protein GAGA_3693 [Glaciecola agarilytica NO2]
Length = 818
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 34/264 (12%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDN 88
G VK+L++H+T ++ + A S+HY+I E P +++++V ++
Sbjct: 38 GHRVKFLVMHFTAIDYQKSVHALVDEGGL---SAHYLIPESNDPSYPNDSLEILKLVDED 94
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN---------GGVVGE--KFRSTNYYPFDENQI 137
RAWHAG W+ LN SIGI +VN E + R + +D QI
Sbjct: 95 KRAWHAGNSVWQGRSELNDSSIGIEIVNVPECHFDSEAQTTSEHGENRLCVFPDYDPKQI 154
Query: 138 HTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
L L KDI+++ I P V+GH DIAP K DPGP FPW +LY GIGAW D
Sbjct: 155 ELLIALSKDILARNPDISPTRVVGHADIAPARKNDPGPRFPWFELY-QAGIGAWYDND-- 211
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
T E ++F +P + G+ L+AYGYNV T R+ I AF+ HF
Sbjct: 212 TFEQYWQRFNQYQP-----NIGLIQSALRAYGYNVLETGIRDEQTRNAISAFQMHFL--- 263
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P ++ ++ +AL+ KY
Sbjct: 264 -PWQVTGKADSKTAAAIFALLDKY 286
>gi|34498486|ref|NP_902701.1| N-acetylmuramoyl-L-alanine amidase [Chromobacterium violaceum ATCC
12472]
gi|34104341|gb|AAQ60700.1| probable N-acetylmuramoyl-L-alanine amidase [Chromobacterium
violaceum ATCC 12472]
Length = 257
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 28/269 (10%)
Query: 19 WEKNRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKY 75
++ + N Y + G + V++L++HYT +F I N S HY+I + E Y
Sbjct: 2 YQIDYNSYRAIKGFNRRVRFLVMHYTAADFKRSIEDLAVN---GKVSVHYLIPDPTEKTY 58
Query: 76 LPGG----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
+ G ++ +V ++ RAWHAG+ W N+N SIGI VN + + + P
Sbjct: 59 IDAGFKELQIFNLVDESERAWHAGVSYWAGRVNINDSSIGIENVN--LAADHGDGIIFLP 116
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
++E Q+ + L +I+ ++ I P V+GH+D+APG K DPGPLFPW +LY + GIGAW
Sbjct: 117 YNEAQVKAIKSLALNILQRYPDISPTNVVGHSDVAPGRKSDPGPLFPWQELYKE-GIGAW 175
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTH 246
D E F+ P +++ +E L YGY+V+ + ++++R+F+ H
Sbjct: 176 YD-DATKKEYEKIFFEHGLPIEKEI-----IEKLGIYGYDVSHASHPDGLKALVRSFQMH 229
Query: 247 FSANQNPERIYADITTEDMFWAWALVAKY 275
F R+ D+ T + +ALV KY
Sbjct: 230 FRPADYDGRV--DVETTAIL--YALVKKY 254
>gi|425897838|ref|ZP_18874429.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397892364|gb|EJL08842.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 254
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 29/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKYLPGG----KVIQIVPDN 88
V++L+LHYT NF + A T+ A S+HY+I + ++ Y G ++ +V +
Sbjct: 19 VRFLVLHYTALNFEASVKALTTGAA----SAHYLIPALQDPTYQAAGFQEQRIFNLVAEE 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG+ W LN SIGI +VN V F +Y + +Q+ L L +I
Sbjct: 75 DRAWHAGVSDWAGRSGLNDTSIGIEIVNEATDVNGVFTFPDY---ERSQVEALKQLALNI 131
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + P+ V+GH+DIA G K DPGP PW +LY GIGAW DE T V++F+
Sbjct: 132 LQRYPDLSPKNVVGHSDIAVGRKSDPGPKLPWKELY-KAGIGAWY--DEPTKRKYVQQFR 188
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITT 262
A P R L+ YGY V +S++RAF+ HF P+ +
Sbjct: 189 AAG-LPA---RAEVLKAFATYGYGVPAQATDDFFQSLVRAFQMHF----RPKNYTGKLDV 240
Query: 263 EDMFWAWALVAKY 275
E +AL KY
Sbjct: 241 ETCAILYALNEKY 253
>gi|161502844|ref|YP_001569956.1| hypothetical protein SARI_00898 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160864191|gb|ABX20814.1| hypothetical protein SARI_00898 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 233
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 28/247 (11%)
Query: 39 LHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDNMRAWH 93
+HYT +F I A T S+HY++ + E Y+ G ++ +V +N RAWH
Sbjct: 1 MHYTSIDFKASIAALTGASV----SAHYLVPDPSEKTYIAAGFKDMRIFNLVDENERAWH 56
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF-K 152
AG+ W NLN SIGI +VN + + + P++ I + L +I+ ++
Sbjct: 57 AGVSSWAGRSNLNDTSIGIEMVN--LASDNNGVFVFPPYNPVLIDAIKELAANILQRYPD 114
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P V+GH+DIAPG K DPG FPW +LY D GIGAW +E T++ +++F + P
Sbjct: 115 ITPVNVVGHSDIAPGRKSDPGAAFPWKELY-DAGIGAWY--EESTMQHYLKQFSKSVPSK 171
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
++ + LKAYGY + T +++IR F+ HF +N + + AD T +
Sbjct: 172 TEI-----VAKLKAYGYGISDAGTEIGYKNLIRTFQLHFR-QKNYDGV-ADAETAAIL-- 222
Query: 269 WALVAKY 275
+ALV KY
Sbjct: 223 YALVDKY 229
>gi|422674424|ref|ZP_16733777.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. aceris
str. M302273]
gi|330972151|gb|EGH72217.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. aceris
str. M302273]
Length = 259
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + H + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYVVMHYTSTSLEHSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLATNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|410640256|ref|ZP_11350794.1| hypothetical protein GCHA_1019 [Glaciecola chathamensis S18K6]
gi|410140260|dbj|GAC08981.1| hypothetical protein GCHA_1019 [Glaciecola chathamensis S18K6]
Length = 818
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 34/264 (12%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDN 88
G VK+L++H+T ++ + A S+HY+I E P +++++V ++
Sbjct: 38 GHRVKFLVMHFTAIDYQKSVHALVDEGGL---SAHYLIPESNDPSYPNDSLEILKLVDED 94
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN---------GGVVGE--KFRSTNYYPFDENQI 137
RAWHAG W+ LN SIGI +VN E + R + +D QI
Sbjct: 95 KRAWHAGNSVWQGRSELNDSSIGIEIVNVPECHFDSEAKTTSEHGENRLCVFPDYDPKQI 154
Query: 138 HTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
L L KDI+++ I P V+GH DIAP K DPGP FPW +LY GIGAW D
Sbjct: 155 ELLIALSKDILARNPDISPTRVVGHADIAPARKNDPGPRFPWFELY-QAGIGAWYDND-- 211
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
T E ++F +P + G+ L+AYGYNV T R+ I AF+ HF
Sbjct: 212 TFEQYWQRFNQYQP-----NIGLVQSALRAYGYNVLETGIRDEQTRNAISAFQMHFL--- 263
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P ++ ++ +AL+ KY
Sbjct: 264 -PWQVTGKADSKTAAAIFALLDKY 286
>gi|253559458|gb|ACT32419.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens]
Length = 259
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + H + T H S+HY+I + + + ++V + RAWH
Sbjct: 35 IQFVVVHYTSASLEHSLALLT----HGEVSAHYLIGDDKD-----ATIYKLVDEGRRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G V + +YP+ E Q+ L +L KDI+ + I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGFV-DTPTGRLWYPYSEAQVQALTVLLKDIIQRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L G+G W PDE V F P P
Sbjct: 145 NPRSIIGHSDIAPQRKLDPGPLFPWKRL-AQAGLGVW--PDEQAVARQQAIFAPQLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F L GY T + V+ AF+ H+
Sbjct: 199 --PASWFQAELARLGYPTPQTGEWDVATHHVLAAFQMHY 235
>gi|422639679|ref|ZP_16703107.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae Cit 7]
gi|330952071|gb|EGH52331.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae Cit 7]
Length = 259
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V +N RAWH
Sbjct: 35 AQYVVMHYTSASLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDENARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + KI
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNKI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAANLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|93005043|ref|YP_579480.1| negative regulator of AmpC, AmpD [Psychrobacter cryohalolentis K5]
gi|92392721|gb|ABE73996.1| negative regulator of AmpC, AmpD [Psychrobacter cryohalolentis K5]
Length = 294
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 34/235 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K ++LHYTV + A I T+ S+HY+I + K+ +VP++ RAWH
Sbjct: 50 IKSIVLHYTVSDNARSIKTLTTGNV----SAHYLILDNND-----NKIYNLVPESERAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFR------STNYYP------FDENQIHTLG 141
AG G + LN SIGI +VN G+ K+R + +Y+P F+E QI +
Sbjct: 101 AGAGGFAGRTILNDTSIGIEIVNAGI-KPKYRDALKNGALDYHPYEHYVEFNELQIKKVA 159
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L +D+ ++ I + ++GH D+AP K+D G FPW +LY DYGIGAW DE +
Sbjct: 160 QLVQDLAKRYNISAKNIIGHADMAPSRKIDSGAKFPWQRLYFDYGIGAWY--DEFDKQYF 217
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+ + + A ++ + + YGY + T+ R+V+ AF+ HF Q
Sbjct: 218 MNQDEFAAVTIPEIKQA-----FRDYGYQINDTDAWDKASRNVVYAFQLHFRPQQ 267
>gi|110634368|ref|YP_674576.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Chelativorans sp. BNC1]
gi|110285352|gb|ABG63411.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Chelativorans sp. BNC1]
Length = 251
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 118/247 (47%), Gaps = 29/247 (11%)
Query: 8 MPGYVIDPFPEW--EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSH 65
M G+ D FPE + N + R G +ILHYT + N + SSH
Sbjct: 1 MTGFPPD-FPEAAVRPSPNFGERRKGRKPDAIILHYTGMTSGQAAEDWLCNPTSEV-SSH 58
Query: 66 YVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFR 125
Y+ E G+V+Q+VP+ RAWHAG G W+ + ++NS SIG+ +VN G +F
Sbjct: 59 YLAHED-------GRVVQMVPEAARAWHAGRGSWKGEDDVNSFSIGVEIVN---PGHQF- 107
Query: 126 STNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDY 185
Y F QI + L DI + I PQ VL H+D APG K+DPG FPW +L +
Sbjct: 108 --GYRDFPSVQIDAVAALCLDICRRNAILPQRVLAHSDTAPGRKVDPGEKFPWKRL-AEM 164
Query: 186 GIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVI 240
G+G ++ P+ +T ++ P R L YGY + T +V+
Sbjct: 165 GVGHYVDPERVTGGEVL------APGDRGSAVAGLQRRLAEYGYGIEKTGVFDAETETVV 218
Query: 241 RAFKTHF 247
AF+ HF
Sbjct: 219 AAFQRHF 225
>gi|378947985|ref|YP_005205473.1| protein AmpDh2 [Pseudomonas fluorescens F113]
gi|359757999|gb|AEV60078.1| AmpDh2 [Pseudomonas fluorescens F113]
Length = 270
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + H + T H S+HY+I + + + ++V + RAWH
Sbjct: 46 IQFVVVHYTSASLEHSLALLT----HGEVSAHYLIGDDKD-----ATIYKLVDEGRRAWH 96
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G V + +YP+ E Q+ L +L KDI+ + I
Sbjct: 97 AGESEWEGRTWLNSSSIGIEIVNPGFV-DTPTGRLWYPYSEAQVQALTVLLKDIIQRNGI 155
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L G+G W PDE V F P P
Sbjct: 156 NPRSIIGHSDIAPQRKLDPGPLFPWKRL-AQAGLGVW--PDEQAVARQQAIFAPQLP--- 209
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F L GY T + V+ AF+ H+
Sbjct: 210 --PASWFQAELARLGYPTPQTGEWDVATHHVLAAFQMHY 246
>gi|332308380|ref|YP_004436231.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Glaciecola sp. 4H-3-7+YE-5]
gi|332175709|gb|AEE24963.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Glaciecola sp. 4H-3-7+YE-5]
Length = 818
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 34/264 (12%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDN 88
G VK+L++H+T ++ + A S+HY+I E P +++++V ++
Sbjct: 38 GHRVKFLVMHFTAIDYQKSVHALVDEGGL---SAHYLIPESNDPSYPNDSLEILKLVDED 94
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN---------GGVVGE--KFRSTNYYPFDENQI 137
RAWHAG W+ LN SIGI +VN E + R + +D QI
Sbjct: 95 KRAWHAGNSVWQGRSELNDSSIGIEIVNVPECHFDSEAQTTSEHGENRLCVFPDYDPKQI 154
Query: 138 HTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
L L KDI+++ I P V+GH DIAP K DPGP FPW +LY GIGAW D
Sbjct: 155 ELLIALSKDILARNPDISPTRVVGHADIAPARKNDPGPRFPWFELY-QAGIGAWYDND-- 211
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
T E ++F +P + G+ L+AYGYNV T R+ I AF+ HF
Sbjct: 212 TFEQYWQRFNQYQP-----NIGLVQSALRAYGYNVLETGIRDEQTRNAISAFQMHFL--- 263
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
P ++ ++ +AL+ KY
Sbjct: 264 -PWQVTGKADSKTAAAIFALLDKY 286
>gi|152987596|ref|YP_001350053.1| hypothetical protein PSPA7_4711 [Pseudomonas aeruginosa PA7]
gi|150962754|gb|ABR84779.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 255
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 27/255 (10%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-----EGKYLPGGKVIQIV 85
G V++L+LHYT +FA + A T+ A S+HY+I + G ++ +V
Sbjct: 16 GKRVRFLVLHYTALDFAASVEALTTGAA----SAHYLIPAPHDPSYKAAGFKGQRIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+ RAWHAGI W NLN SIGI +VN + + + ++ +QI L L K
Sbjct: 72 AEEDRAWHAGISGWAGRDNLNDTSIGIEIVN--LARDDDGVFTFPDYERSQIGALKQLAK 129
Query: 146 DIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+I+ ++ + P+ V+GH+DIA G K DPGP PW +LY GIGAW D+ + +
Sbjct: 130 NILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELYA-AGIGAWY--DDASRDRYREG 186
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADI 260
F+ P R LE + YGY + T S++RAF+ HF PE +
Sbjct: 187 FERDGLPP----RAELLEAFRRYGYALPATIDDAYFASLLRAFQMHF----RPENHDGAL 238
Query: 261 TTEDMFWAWALVAKY 275
E +AL KY
Sbjct: 239 DVETAAILYALNEKY 253
>gi|424065469|ref|ZP_17802944.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
gi|408003335|gb|EKG43526.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
Length = 259
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V +N RAWH
Sbjct: 35 AQYVVMHYTSASLERSLQLLT----HGEVSAHYLIGDDSE-----ATIYKLVDENARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPSRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|424070154|ref|ZP_17807590.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|408001165|gb|EKG41487.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 259
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V +N RAWH
Sbjct: 35 AQYVVMHYTSASLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDENARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPSRKQDPGPLFPWKRLATE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|319898975|ref|YP_004159068.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella clarridgeiae
73]
gi|319402939|emb|CBI76490.1| N-acetylmuramoyl-L-alanine amidase amiD precursor [Bartonella
clarridgeiae 73]
Length = 260
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 28/265 (10%)
Query: 21 KNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG 79
+N ++SR V++L++HYT NF +T T S+HY++ + E Y+ G
Sbjct: 10 RNVKGFNSR----VRFLVMHYTAANFKSSVTTLTGPSV----SAHYLVPDPSEKTYIEAG 61
Query: 80 ----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
+ +V +N RAWHAG+ W NLN +IGI ++N + + PF
Sbjct: 62 FKDMHIFNLVDENERAWHAGVSSWAGRSNLNDTAIGIEIIN--LASNNNGQLIFPPFHPK 119
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ + L +I+ ++ I P V+GH DI+PG K+DPG FPW +LY D GIGAW D
Sbjct: 120 QVDAIKELAFNILQRYPSITPTNVVGHNDISPGRKVDPGAAFPWKELY-DAGIGAWY--D 176
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSAN 250
+ ++F P + + + LK YGY+ + + +++I AF+ HF
Sbjct: 177 VAKKDNYEKEFS-KNPSSFEKAKKEVVSKLKKYGYDTSGADTGNGYKNLIMAFQLHFR-- 233
Query: 251 QNPERIYADITTEDMFWAWALVAKY 275
QN DI T + +ALV KY
Sbjct: 234 QNNYNGVLDIETAAII--YALVEKY 256
>gi|388467034|ref|ZP_10141244.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas synxantha
BG33R]
gi|388010614|gb|EIK71801.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas synxantha
BG33R]
Length = 258
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 116/235 (49%), Gaps = 31/235 (13%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N +H V+++++HYT N + T H SSHY+I + G +
Sbjct: 23 NTSHPSVNHDNRVQFVVVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----GTI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQI 137
++V ++ RAWHAG +W LNS SIGI +VN G FR T +YP+ E Q+
Sbjct: 74 YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPG-----FRDTPTGRVWYPYSEAQV 128
Query: 138 HTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+L +L KDI + I+P+ ++GH+DIAP K+DPGPLFPW +L + G+ W PD
Sbjct: 129 QSLIVLLKDISKRNGIEPKNIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLAVW--PDAQA 185
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
V ++ P F E L GY T + R VI AF+ F
Sbjct: 186 VARFQVQYGAQLP-----SITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRF 235
>gi|410617919|ref|ZP_11328883.1| hypothetical protein GPLA_2116 [Glaciecola polaris LMG 21857]
gi|410162649|dbj|GAC33021.1| hypothetical protein GPLA_2116 [Glaciecola polaris LMG 21857]
Length = 833
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 131/266 (49%), Gaps = 36/266 (13%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDN 88
G VK+L++H+T ++ + A + S+HY+I E P +++++V +N
Sbjct: 48 GHRVKFLVMHFTAIDYQKSVNALVDEGSL---SAHYLIPESNDPSYPNSSLEILKLVDEN 104
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN-----------GGVVGE--KFRSTNYYPFDEN 135
RAWHAG W+ LN SIGI +VN G+ E R + +D
Sbjct: 105 KRAWHAGNSVWQGRTELNDSSIGIEIVNVPECHRDKQAGKGIQTEHGDNRLCVFPDYDPK 164
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L KDI+++ I P V+GH DIAP K DPGP FPW +LY + GIGAW D
Sbjct: 165 QIELLIALSKDILARNPDISPTRVIGHADIAPTRKNDPGPRFPWYELYQE-GIGAWYDND 223
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSA 249
T E ++F +P + G+ L+ YGY++ T +V+ AF+ HF
Sbjct: 224 --TFEQYWQRFNQYQP-----NIGLVQTALRTYGYDILETGILDEQTHNVVSAFQMHFL- 275
Query: 250 NQNPERIYADITTEDMFWAWALVAKY 275
P ++ + ++ +AL+ KY
Sbjct: 276 ---PWQVTGQVDSKTAGAVFALLDKY 298
>gi|269105102|ref|ZP_06157797.1| N-acetylmuramoyl-L-alanine amidase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268160737|gb|EEZ39235.1| N-acetylmuramoyl-L-alanine amidase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 256
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 28/264 (10%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + ++++++HYT +F + + S+HY++ + E Y+ G
Sbjct: 7 NSYRSVKGFNRRIRFIVMHYTAADFFSSVKLLAGDGGV---SAHYLVPDPTEKNYINSGF 63
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
++ +V ++ RAWHAGI W+ +LN SIGI +VN + + + PF + Q
Sbjct: 64 KDMRIFNLVDESDRAWHAGISHWQGRSSLNDTSIGIEIVN--LAKYEHGEFIFPPFKQEQ 121
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIA G K DPGPLFPW +LY +G+GAW DE
Sbjct: 122 IEAVKTLALNIIQRYPDISPINVIGHSDIAVGRKSDPGPLFPWFELY-QFGVGAWYD-DE 179
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
+ +++ K P + + + + AYGY+++ N + ++RAF+ HF
Sbjct: 180 TKDKYLIQFHKEGIPIQKDI-----ISKMNAYGYDISNANTNDGYQKLVRAFQLHFRQKN 234
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
R + E ++LV KY
Sbjct: 235 YDGR----MDNETAAILYSLVDKY 254
>gi|420244384|ref|ZP_14748174.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF080]
gi|398054139|gb|EJL46276.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF080]
Length = 253
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 127/264 (48%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + DG +ILHYT ++ N + SSHY +
Sbjct: 10 GATVRPSP------NHGERVDGRRPDMIILHYTGMPSGDQALSWLCNEESQV-SSHYFVH 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+V+Q+VP+ RAWHAG W + ++NS SIGI + N G G
Sbjct: 63 ED-------GRVVQLVPEERRAWHAGRSSWAGETDINSCSIGIEIANPGHPG----GLPE 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
YP QI + L ++ +++I+P+ VLGH+D+AP K+DPG FPW KL+L+ G+G
Sbjct: 112 YP--AVQIAAVVELCRNCGKRWQIRPERVLGHSDVAPIRKVDPGENFPWEKLHLE-GVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P ++ + + +P +L YGY + IT + V+ AF+
Sbjct: 169 WIDPMHISGGRFFQFGESGQPIE------ALQSMLSLYGYGIDITGNFCERTKGVVEAFQ 222
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF P+ + AD +T D
Sbjct: 223 RHF----RPQLVDGIADFSTIDTL 242
>gi|86358463|ref|YP_470355.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium etli CFN 42]
gi|86282565|gb|ABC91628.1| probable N-acetylmuramoyl-L-alanine amidase protein [Rhizobium etli
CFN 42]
Length = 224
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 117/237 (49%), Gaps = 32/237 (13%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A + R + SSHY + E G+VIQ+VP+ RAWHAG
Sbjct: 2 ILLHYTGMPTADGALDWLC-RGESQVSSHYFVHEN-------GEVIQLVPEARRAWHAGK 53
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W + ++NS+SIGI + N G G YP + QI + L +D V ++ I P+
Sbjct: 54 SSWHGESDINSLSIGIEIANAGHPG----GLPDYP--KEQIAAVIELCRDCVKRWSIAPE 107
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VLGH+D+AP K+DPG FPW +L+ G+G W+ P +T ++ +P
Sbjct: 108 RVLGHSDVAPIRKVDPGEKFPWAELH-RAGVGHWVEPATITGGRFFQRGDAGQPVE---- 162
Query: 217 RGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI--YADITTEDMF 266
+L YGY IT K S + AF+ HF PER+ AD +T D
Sbjct: 163 --ALQSMLSLYGYGTEITGKFSEKTAGDVEAFQRHF----RPERVDGIADFSTIDTL 213
>gi|225621012|ref|YP_002722270.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hyodysenteriae WA1]
gi|225215832|gb|ACN84566.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hyodysenteriae WA1]
Length = 342
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 46/259 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ +KY+ILHYT N T S+HY+I+ +E + + ++V DN R
Sbjct: 47 NLRIKYIILHYTALNDDLSFKVLTDPGV----SAHYLITTREDE-----PIYKLVDDNDR 97
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG------EKFRSTN--------------YY 130
AWHAGI + ++N SIGI +VN G + E R Y
Sbjct: 98 AWHAGITMFDNRHSMNDTSIGIEIVNLGFLQKVTNTYEDLRRMTKKQREELFFIPYDEYI 157
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+++QI + L K+++ ++ IKP +LGH+DIAP K DPGP FPW +LY +Y +G W
Sbjct: 158 EFEDSQIDKVAYLLKELIEKYGIKPYNILGHSDIAPYRKKDPGPKFPWKRLYDEYNLGIW 217
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAFK 244
E F Y + I E +K YGY TN R V+ AF+
Sbjct: 218 YD------EYDYSNFLNDNEYRKAKVMDIKEEFIK-YGYTSMPTNNVWDFDSRKVLYAFQ 270
Query: 245 THFSANQNPERIYADITTE 263
HF PE+I +I E
Sbjct: 271 CHFR----PEKIDGNIDNE 285
>gi|152986441|ref|YP_001346291.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas aeruginosa
PA7]
gi|150961599|gb|ABR83624.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas aeruginosa
PA7]
Length = 291
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 29/247 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVI-SEKEGKY----LPGGKVIQIVPDN 88
V+YL+LHYT +F+ + T S+HY++ S + Y G ++ +V +N
Sbjct: 56 VRYLVLHYTALDFSRSVEMLTRGPG----SAHYLVPSPADASYRRAGFSGQRIFNLVDEN 111
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK-FRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG+ W LN SIGI +VN + F +Y P +QI L L ++I
Sbjct: 112 DRAWHAGVSSWGGREGLNDSSIGIEIVNLARDDDGVFTFPDYEP---SQIEALRQLARNI 168
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF- 205
+ ++ I P++VLGH+DIA G K DPGP PW +L+ D GIGAW D+ T + +F
Sbjct: 169 LQRYPDISPKHVLGHSDIAVGRKSDPGPKLPWKELH-DAGIGAWY--DDATRDRYQARFE 225
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADIT 261
+ P R +LE L+ YGY V + +++RAF+ HF + + AD
Sbjct: 226 RDGLP-----SRAEWLEALRRYGYAVPERGNDEDFANLLRAFQMHFRPDNHDG--VADAE 278
Query: 262 TEDMFWA 268
T + +A
Sbjct: 279 TAAILYA 285
>gi|405381867|ref|ZP_11035689.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF142]
gi|397321355|gb|EJJ25771.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF142]
Length = 253
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 126/254 (49%), Gaps = 40/254 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + DG ++LHYT + R + SSHY + P G+V+Q
Sbjct: 18 NHGERADGRKPDMILLHYTGMPSPEGALDWLC-RDESQVSSHYFVH-------PNGEVVQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP++ RAWHAG W + ++NSMSIGI + N G G YP + QI + L
Sbjct: 70 LVPESRRAWHAGKSFWHGETDINSMSIGIEIANAGHPG----GLPDYP--KEQIAAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D ++ I P+ VLGH+D+AP K+DPG FPW +L+ G+G W+ P +T
Sbjct: 124 CRDCGDRWSIAPERVLGHSDVAPVRKVDPGEKFPWRELH-QAGVGHWVEPAAIT------ 176
Query: 204 KFKPARPYPRKLDRGIFLELLKA----YGYNVTITNKRS-----VIRAFKTHFSANQNPE 254
+ ++ DRG +E L++ YGY IT + S + AF+ HF PE
Sbjct: 177 ----GGRFFQRGDRGQPIEALQSMLSLYGYGTEITGEFSDKTAGDVEAFQRHF----RPE 228
Query: 255 RI--YADITTEDMF 266
R+ AD +T D
Sbjct: 229 RVDGIADFSTIDTL 242
>gi|294783898|ref|ZP_06749220.1| N-acetylmuramoyl-L-alanine amidase family protein [Fusobacterium
sp. 1_1_41FAA]
gi|294479710|gb|EFG27489.1| N-acetylmuramoyl-L-alanine amidase family protein [Fusobacterium
sp. 1_1_41FAA]
Length = 299
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 28/227 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT N + I SNR S+H+++ +++ + +VP + RAWH
Sbjct: 64 IQFVVVHYTATNNEYSIKELISNRV----SAHFLVLDEDDNI-----IYNLVPLDQRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-------FDENQIHTLGLLGKD 146
AG +R NLN SIGI +V+ G+ ++ N YP + QI + + K
Sbjct: 115 AGASSFRGRTNLNDTSIGIEIVSDGIARDRRNDPNRYPPYDAYLEYKPIQIEKVAQIIKY 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ +++ I + ++ H+DIAP K DPG FPW +LY Y IGAW + + KF
Sbjct: 175 VAARYNIPAKNIVAHSDIAPSRKKDPGAKFPWKELYEKYDIGAWYNESDKQAFMNEEKFN 234
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFS 248
K E L+ YGY V TN+ R V+ AF+ HF+
Sbjct: 235 ATSISDIK-------EELRKYGYEVNRTNEWDRDSRDVVYAFQLHFN 274
>gi|384207852|ref|YP_005593572.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira intermedia PWS/A]
gi|343385502|gb|AEM20992.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira intermedia PWS/A]
Length = 343
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 123/259 (47%), Gaps = 46/259 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ +KY+ILHYT N T S+HY+I+ K+ + + ++V D R
Sbjct: 48 NLRIKYIILHYTALNDDLSFKVLTDPGV----SAHYLITTKKDE-----PIYKLVDDGDR 98
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVV------------------GEKFRST--NYY 130
AWHAGI + ++N SIGI +VN G + E F ++ Y
Sbjct: 99 AWHAGITMFDNRYSMNDSSIGIEIVNLGFLKKVTNTYEELNRMTQKQRDELFFTSYDEYI 158
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+E+QI + L KD++ +++IKP +LGH+DIAP K DPGP FPW +L+ +Y +G W
Sbjct: 159 EFEESQIEKVAYLLKDLIEKYEIKPYNILGHSDIAPYRKKDPGPKFPWKRLHDEYNLGIW 218
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAFK 244
E F Y + I E +K YGY TN R VI AF+
Sbjct: 219 YD------EYDYSNFLNDDEYKKAKVMDIKEEFIK-YGYTSMPTNNVWDLDSRKVIYAFQ 271
Query: 245 THFSANQNPERIYADITTE 263
HF PE+I +I E
Sbjct: 272 CHFR----PEKIDGNIDNE 286
>gi|395495871|ref|ZP_10427450.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. PAMC 25886]
Length = 258
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 118/234 (50%), Gaps = 23/234 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+ +H S V+++I+HYT + + T H SSHY+I + G +
Sbjct: 23 DTSHPSSNHDNRVQFVIVHYTSASLERSLALLT----HGQVSSHYLIGDDAS-----GTI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGY-RDLPTGRVWYPYTEAQVQSLV 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L D G+G W PD V
Sbjct: 133 VLLKDISKRNGIDPRNIIGHSDIAPLRKLDPGPLFPWKRL-ADEGLGMW--PDAKAVARY 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
++ P F E L GY T + R V+ AF+ HF A+
Sbjct: 190 QVQYASDLP-----SITWFQEELAKLGYPTPQTGELDVATRHVMAAFQMHFRAS 238
>gi|409422263|ref|ZP_11259368.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. HYS]
Length = 258
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R+H +++++LHYT + + T H SSHY+I + V
Sbjct: 23 DRSHTSVNQDERIQFVVLHYTNASLERSLKLLT----HGEVSSHYLIGDSPAT------V 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V ++ RAWHAG +W LNS SIGI +VN G + ++P+ E Q+ L
Sbjct: 73 YQLVDESRRAWHAGDSQWDGRTWLNSTSIGIEIVNPGFT-DTPTGRIWHPYTEAQVQALI 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDIV + IKP+Y++GH+DIAP K+DPGP+FPW +L D G+G W P+ V
Sbjct: 132 VLLKDIVKRNNIKPRYIIGHSDIAPLRKLDPGPMFPWKRL-ADAGLGVW--PNAQAVAQQ 188
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P + + LK +GY + T + + V+ AF+ F
Sbjct: 189 QAYFSINPP-----SITWYQQQLKRFGYAIEQTGEYDVSTKHVLAAFQMRF 234
>gi|395804006|ref|ZP_10483247.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium sp. F52]
gi|395433650|gb|EJF99602.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium sp. F52]
Length = 301
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I FT + S+HY+ISE GKV+Q++ D +RAWHA
Sbjct: 101 FVIIHHTAQDSLQQTINTFTKTKTQ--VSAHYIISE-------NGKVVQMLNDYLRAWHA 151
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G W + +LNS SIGI L N G + PF E QI +L L + + I
Sbjct: 152 GNSTWGKTTDLNSCSIGIELDNNG----------FKPFTEAQISSLVALLTKLKKDYNIP 201
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
Q LGH DIAPG K DP LFPW L + G G W PDE+ +PA P+ K
Sbjct: 202 TQNFLGHADIAPGRKQDPSALFPWKTL-AEKGFGIW--PDEV--------LEPA-PFDFK 249
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
++ L+ GYN N + I+AFK H+
Sbjct: 250 IEPA-----LRIIGYNT--KNLTAAIQAFKLHY 275
>gi|312114454|ref|YP_004012050.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodomicrobium vannielii ATCC 17100]
gi|311219583|gb|ADP70951.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodomicrobium vannielii ATCC 17100]
Length = 263
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N D R + LILHYT A + + R + S HYV+ E G + Q
Sbjct: 24 NREDRRGCSAPNILILHYTGMESAEAAIRWLALRESGV-SCHYVVDET-------GAITQ 75
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG+ W ++NS SIGI + N G Y F Q+ + L
Sbjct: 76 LVPEGSRAWHAGLSMWEGRDDVNSRSIGIEIHNPG------HGLGYPDFPRAQMLAVEKL 129
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
DIVS+ KI P++VL H+DIAP K DPG F W L L GIG W+ P + VE
Sbjct: 130 CHDIVSRNKIAPRHVLAHSDIAPARKDDPGEKFNWAWLALG-GIGHWVEPAPI-VEGDAL 187
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
R+L + L AYGY + +T R V+RAF+ HF
Sbjct: 188 DTGSCGAAVRELQKK-----LAAYGYGIDVTGAYDDATRIVVRAFQRHF 231
>gi|423092827|ref|ZP_17080623.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
Q2-87]
gi|397882523|gb|EJK99010.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
Q2-87]
Length = 259
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + + T H SSHY+I + +G + ++V ++ RAWH
Sbjct: 35 IQFVVVHYTSASLERSLALLT----HGEVSSHYLIGDDKG-----ATIYKLVDESRRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G V + +YP+ E Q+ L +L KDI+ + I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGFV-DTPTGRLWYPYSEAQVQALIVLLKDIIQRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L G+G W PDE V + F P
Sbjct: 145 NPRSIIGHSDIAPLRKLDPGPLFPWKRLA-QAGLGVW--PDEQAVARLQPTFAAQLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F L GY T + V+ AF+ H+
Sbjct: 199 --SASWFQVELARLGYPTPQTGEWDVATHHVLAAFQMHY 235
>gi|417413557|ref|ZP_12158348.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353625938|gb|EHC74599.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
Length = 186
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIH 138
+P+ +AWHAG+ WR LN SIGI L N GGV ++ PF+ QI
Sbjct: 1 MPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQ 53
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V
Sbjct: 54 ALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRV 110
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPE 254
+ P P +D L LL YGY V T ++ VI AF+ HF Q
Sbjct: 111 AFYLAGRAPYTP----VDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--W 164
Query: 255 RIYADITTEDMFWAWALVAKYGS 277
AD T+ + A AL+ KYG
Sbjct: 165 NGIADAETQAI--AEALLEKYGQ 185
>gi|440743120|ref|ZP_20922437.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP39023]
gi|440376196|gb|ELQ12876.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP39023]
Length = 259
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V +N RAWH
Sbjct: 35 AQYVVMHYTSASLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDENARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + KI
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNKI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V + ++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQTLLAANLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|392419285|ref|YP_006455889.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri CCUG
29243]
gi|390981473|gb|AFM31466.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri CCUG
29243]
Length = 262
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 36/232 (15%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+DSR +++ILHYT + + + SSHY+I+E + ++V
Sbjct: 31 HDSR----AQFIILHYTSTDLPRSLQLLSGRDV----SSHYLIAESPAT------IYRLV 76
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W LN+ SIGI LVN G V +YP+ E QI L +L K
Sbjct: 77 DENRRAWHAGESEWNGRTWLNATSIGIELVNRGYVESADGRRLWYPYSEEQIDALVVLLK 136
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI+++ +KP ++GH+DIAP K+DPGPLFPW +L + G+ W PD V A ++
Sbjct: 137 DIMARHDLKPGAIIGHSDIAPQRKVDPGPLFPWKRL-AEEGLLPW--PDADAVAAERMRY 193
Query: 206 KPARPYPRKLDRGI-----FLELLKAYGYNV-----TITNKRSVIRAFKTHF 247
A G+ F + L A GY V R+VI AF+ +
Sbjct: 194 ASA---------GLPTIAWFQDALAAQGYRVPRHGHLDDETRNVIAAFQMKY 236
>gi|422666764|ref|ZP_16726631.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330977288|gb|EGH77243.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 259
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V +N RAWH
Sbjct: 35 AQYVVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDENARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|422403151|ref|ZP_16480210.1| N-acetylmuramoyl-L-alanine amidase, partial [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330872978|gb|EGH07127.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 231
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 21/169 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y+I+HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQYVIMHYTSTSMEKSLQLLT----HGEVSSHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W LNS SIGI +VN G F+ T +YP+ E QI ++ +L KDIV
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPG-----FKDTPAGRLWYPYTEAQIQSITVLLKDIVK 140
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ KI P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 141 RNKIDPKHIIGHSDIAPTRKQDPGPLFPWKRLAAE-GLGIW--PDERLV 186
>gi|330806707|ref|YP_004351169.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423694553|ref|ZP_17669043.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
Q8r1-96]
gi|327374815|gb|AEA66165.1| Putative N-acetylmuramoyl-L-alanine amidase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|388004363|gb|EIK65676.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
Q8r1-96]
Length = 259
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + + T H S+HY+I + +G + ++V + RAWH
Sbjct: 35 IQFVVVHYTSASLERSLALLT----HGEVSAHYLIGDDKG-----ATIYKLVDEGRRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G V + +YP+ E Q+ L +L KDI+ + I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGFV-DTPTGRLWYPYSEAQVQALIVLLKDIIQRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L G+G W PDE V F P P
Sbjct: 145 NPRSIIGHSDIAPLRKLDPGPLFPWKRLA-QAGLGVW--PDEQAVARQQAVFAPQLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F L GY T + V+ AF+ H+
Sbjct: 199 --PASWFQAELARLGYPTPQTGEWDVATHHVLAAFQMHY 235
>gi|86140023|ref|ZP_01058587.1| N-acetylmuramoyl-L-alanine amidase, putative [Roseobacter sp.
MED193]
gi|85823273|gb|EAQ43484.1| N-acetylmuramoyl-L-alanine amidase, putative [Roseobacter sp.
MED193]
Length = 247
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
W + N RDG+ ++LHYT A A + A + S+HY+I
Sbjct: 26 WSPSPNQSARRDGLRPSMVVLHYTAMQGAEAALARLCDPAAEV-SAHYLIGRD------- 77
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G++ Q+VP++ RAWHAG G+WR ++NS SIGI L N T +PF E Q+
Sbjct: 78 GRLWQMVPESQRAWHAGAGEWRGQGDINSRSIGIELDN----------TGGHPFSEPQMA 127
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
L +L I+ ++ I P+ V+GH+D+APG K DPGP F W +L
Sbjct: 128 VLEVLLAQILRRWSILPEAVIGHSDMAPGRKCDPGPRFDWARL 170
>gi|163761080|ref|ZP_02168157.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43]
gi|162281631|gb|EDQ31925.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43]
Length = 259
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 31/246 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N + R+G LILHYT A + + SSHY + E G + Q
Sbjct: 23 NCGERRNGRKPDMLILHYTGMATAQAALDWLCAEESQV-SSHYFVDE-------AGLITQ 74
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG KW+ + + NS SIGI + + VG + +T +P + QI + L
Sbjct: 75 MVPEAARAWHAGESKWKGETDNNSASIGIEIAH---VGHREDATPDFP--DVQIEAVIAL 129
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDIV + I + VL H+DIAP K DPG +FPW +LY + GIG W+ P + +
Sbjct: 130 CKDIVERNGIAAERVLAHSDIAPMRKQDPGEMFPWNRLYRE-GIGHWVEPLPVGGGRFFQ 188
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHFSANQNPERI-- 256
+ +P +L YGY + + +V+RAF+ HF P R+
Sbjct: 189 EGDSGQPVE------ALQTMLALYGYGLEVDGVYSAQTAAVVRAFQRHF----RPARVDG 238
Query: 257 YADITT 262
AD +T
Sbjct: 239 IADAST 244
>gi|381187872|ref|ZP_09895434.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium frigoris PS1]
gi|379649660|gb|EIA08233.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium frigoris PS1]
Length = 300
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I FT R SSHYVI++ G V+Q++ D MRAWHA
Sbjct: 102 FIIIHHTAQDSLQQTIKTFTLTRTQ--VSSHYVIAD-------DGSVVQMLNDYMRAWHA 152
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G G W +D +LNS SIGI L N G+ PF E QI +L L + ++ I
Sbjct: 153 GKGSWGKDTDLNSSSIGIELDNNGI----------EPFSEAQITSLMALLSKLKKEYNIP 202
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
Q ++GH+DIAP K DP LFPW L + G G W DE +PA P
Sbjct: 203 TQNIIGHSDIAPSRKTDPSVLFPWKTL-AENGFGLW--ADET--------LEPA-PIAFN 250
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+++G L+ GY+ N S I AFK HF
Sbjct: 251 IEQG-----LRIIGYDT--KNLSSAIMAFKLHF 276
>gi|319406760|emb|CBI80393.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella sp. 1-1C]
Length = 256
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 29/255 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
V +L++HYT +F + T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 20 VCFLVMHYTAIDFKQSVAILTGTKV----SAHYLVPDPLEKTYIEAGFKDMRIFNLVYEN 75
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGLLGKDI 147
RAWHAG+ W NLN SIGI +V+ VV + +P ++ QI + L +I
Sbjct: 76 ERAWHAGVSSWAGRSNLNDTSIGIEIVS--VVTDDMNGMPIFPPYNPMQIDAVKELALNI 133
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I P V+GH+DIAP K DPG FPW +LY GIGAW D+ +F
Sbjct: 134 LQRYPDITPTNVVGHSDIAPDRKSDPGAAFPWKELYT-VGIGAWY--DDELKNCYQAQF- 189
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITT 262
+ P K D + K YGY+ +I +++IRAF+ HF N N + I +
Sbjct: 190 -CKSLPVKAD---IIAKFKRYGYDTSIVKTEGGYKALIRAFQLHFRQN-NYDGI---LDA 241
Query: 263 EDMFWAWALVAKYGS 277
E +ALV KY S
Sbjct: 242 ETAAVLYALVDKYFS 256
>gi|300021606|ref|YP_003754217.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523427|gb|ADJ21896.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hyphomicrobium denitrificans ATCC 51888]
Length = 256
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 116/246 (47%), Gaps = 29/246 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R G+ LILHYT + A + + N+ S HYVI E G++ Q
Sbjct: 18 NHEPRRGGVRPSLLILHYTGMSSAEKAIDWLARAESNV-SCHYVIDED-------GRITQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+++RAWHAG WR + ++NS SIGI + N G Y F Q+ + L
Sbjct: 70 LVPESLRAWHAGASFWRGETDINSHSIGIEIQNPG------HQHGYPDFPAAQMQAVIAL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
GKDI + ++ VL H+DIAPG K+DPG F W L G+G W+ P + +
Sbjct: 124 GKDIAQRHRMAADAVLAHSDIAPGRKIDPGEKFNWA-LLARQGLGLWVRPSSVHAD---- 178
Query: 204 KFKPARPYPRKLDR-GIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIY 257
P R ELL YGY V + V++AF+ HF + R+
Sbjct: 179 --DPGLDIGASGSRVAAAQELLALYGYRVEQSGILDDGTSHVLKAFQAHFRPRRVDGRL- 235
Query: 258 ADITTE 263
D +TE
Sbjct: 236 -DRSTE 240
>gi|70733600|ref|YP_257240.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas protegens Pf-5]
gi|68347899|gb|AAY95505.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas protegens
Pf-5]
Length = 259
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YD R +++I+HYT + + T H SSHY+I + + + ++
Sbjct: 30 NYDQR----AQFIIVHYTSASLERSLALLT----HGQVSSHYLIGDDKS-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V + RAWHAG +W+ LNS SIGI +VN G FR +YP+ E QI L
Sbjct: 77 VDEQYRAWHAGDSQWQGRTWLNSSSIGIEIVNPG-----FRDGPSGRLWYPYSEAQIQNL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I P++++GH+DIAP K+DPGPLFPW +L + G+G W PD V
Sbjct: 132 IVLLKDISKRNNISPRHIIGHSDIAPMRKLDPGPLFPWKRL-AEAGLGLW--PDAQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P G + + L GY T + R+V+ AF+ H+
Sbjct: 189 QQAFFTVSPP-----SIGWYQQQLAQLGYATPQTGELDKATRNVLAAFQMHY 235
>gi|408480721|ref|ZP_11186940.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. R81]
Length = 257
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 36/263 (13%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEG-KYLPGG----K 80
++ R+G V+ +ILHYT FA + T + S+HY++ + + +Y G +
Sbjct: 13 FNERNGEPVRQVILHYTAAPFASSLRTLTQDGV----SAHYLLPDPDDPRYRDAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYYPFDEN 135
V ++V ++ RAWHAG+ W NLNS SIGI +VN GGV + + E
Sbjct: 69 VFRLVEEDKRAWHAGVSHWAGRDNLNSRSIGIEIVNLARDDGGVF-------TFPAYGEE 121
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q L L +DI+ ++ +I P +LGH+D+A K DPGP PW +L+ D G+GAW D
Sbjct: 122 QTQVLIALVRDILGRYPQIGPTDILGHSDVAFSRKSDPGPCLPWRRLH-DAGVGAWF--D 178
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK--RSVIRAFKTHFSANQN 252
E T R+F P +++R + YGY + RAF+ HF
Sbjct: 179 EATQAMYQRRFCLGLPSEVEVERA-----FQRYGYAPAKNRQGFEQRTRAFQMHF----R 229
Query: 253 PERIYADITTEDMFWAWALVAKY 275
P + + +AL KY
Sbjct: 230 PRDYSGSLDAQTCAILYALNEKY 252
>gi|395777800|ref|ZP_10458314.1| hypothetical protein MCU_00015 [Bartonella elizabethae Re6043vi]
gi|423715726|ref|ZP_17689947.1| hypothetical protein MEE_01144 [Bartonella elizabethae F9251]
gi|395418585|gb|EJF84907.1| hypothetical protein MCU_00015 [Bartonella elizabethae Re6043vi]
gi|395429240|gb|EJF95309.1| hypothetical protein MEE_01144 [Bartonella elizabethae F9251]
Length = 267
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 137/277 (49%), Gaps = 39/277 (14%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S S V++L++HYT +F + A T + S+HY++ + E Y G
Sbjct: 7 NSYRSVKSFSRRVRFLVMHYTAIDFKASVMALTGEKV----SAHYLVPDPSEQTYREAGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST--------- 127
++ +V +N RAWHAG+ W +LN SIGI +VN K
Sbjct: 63 KDMRIFNLVDENERAWHAGVSAWAGYSHLNDSSIGIEIVNLATSHSKSSEDTVEMNHHNE 122
Query: 128 --NYYPFDENQIHTLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
++ P++ QI + L +I+ ++ I P V+GH+DIA G K DPG FPW +LY +
Sbjct: 123 EFSFPPYNPIQIDAVKELALNILQRYPGITPTDVVGHSDIAIGRKSDPGAAFPWKELY-E 181
Query: 185 YGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVI 240
GIGAW D+ +F ++ +P K + LE LK YGY+++ + +++I
Sbjct: 182 AGIGAWY--DDEPKNRYQEQF--SKSFPSKEEA---LEKLKCYGYDISAASTEIGYKNLI 234
Query: 241 RAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
RAF+ HF E+ + E +ALV KY S
Sbjct: 235 RAFQLHF----RQEKYDGILDVETAAILYALVDKYFS 267
>gi|408479985|ref|ZP_11186204.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. R81]
Length = 258
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++I+HYT N + T H SSHY+I + G + ++V ++ RAWH
Sbjct: 35 VQFVIVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----GTIYKLVDESQRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G + +YP+ E Q+ +L +L KDI + I
Sbjct: 86 AGESEWMGRTWLNSSSIGIEIVNPGY-KDTPTGRVWYPYSEAQVKSLVVLLKDISKRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L D G+G W P+ V ++ P
Sbjct: 145 DPKNIIGHSDIAPLRKLDPGPLFPWKRL-ADEGLGVW--PNAQAVARFQVQYAAELP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F E L GY T + R VI AF+ F
Sbjct: 199 --SITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRF 235
>gi|381166726|ref|ZP_09875940.1| N-acetylmuramoyl-L-alanine amidase AmiD [Phaeospirillum
molischianum DSM 120]
gi|380684299|emb|CCG40752.1| N-acetylmuramoyl-L-alanine amidase AmiD [Phaeospirillum
molischianum DSM 120]
Length = 223
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 113/236 (47%), Gaps = 38/236 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R + V L+LHYT + A + S+HYVI E G+V
Sbjct: 8 NHEPRRSPL-VDMLVLHYTGMPNGPTALDRLCDPAAKV-SAHYVIEED-------GRVFA 58
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG G WR + ++NS SIGI LVN G Y PF + QI L L
Sbjct: 59 LVEESRRAWHAGAGSWRGETDINSRSIGIELVNPG------HEFGYRPFPQPQIDALIDL 112
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ I+++ I P+ V+ H DIAP K DPG LFPW L +GIG W
Sbjct: 113 ARGILARHPIPPRNVVAHADIAPTRKEDPGELFPWQSLAEPHGIGLWPC----------- 161
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF-----SANQNPE 254
+P P P + L L +GY+V T+ + + AF+ HF S + +PE
Sbjct: 162 -GEPVDPPPLP----VILAGLAHFGYDV--TDPTAALIAFQRHFRPWSLSGDADPE 210
>gi|393758430|ref|ZP_10347251.1| exported hydrolase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164849|gb|EJC64901.1| exported hydrolase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 262
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 25/219 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+YL+LHYT + A + T S+HY++S++ V ++VP+ RAWH
Sbjct: 43 VRYLVLHYTAGDHATSLKVLTQRDV----SAHYLVSDERRP-----TVYRLVPEERRAWH 93
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+G W +LN+ SIGI +VN G + + P+ +QI L +L KD+ + +
Sbjct: 94 AGVGSWYGFTDLNTGSIGIEIVNMG----RLPDGRWAPYTRSQIEALKVLIKDLAQRHGV 149
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+D AP K+DPGP FPW +L GIG W +E A+ ++ RP P
Sbjct: 150 TPRNIIGHSDAAPQRKLDPGPHFPWKEL-AQAGIGRWY--NEAQARALQAQYA-TRPLPS 205
Query: 214 KLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
LL+ GY+ + ++VI AF+ H+
Sbjct: 206 AAQ---TQALLRKAGYDTPDSGVFDKATQNVIAAFQMHY 241
>gi|170748425|ref|YP_001754685.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium radiotolerans JCM 2831]
gi|170654947|gb|ACB24002.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium radiotolerans JCM 2831]
Length = 251
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 41/250 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R G + LILHYT + A + + S+HY++ E G +Q
Sbjct: 18 NHGARRAG-PLDMLILHYTGMDSGAAALARLRDPLSEV-SAHYLVFED-------GGTVQ 68
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG G W+ + ++NS SIGI +VN G G P+ E Q+ + L
Sbjct: 69 MVPEARRAWHAGAGAWKGETDVNSRSIGIEIVNPGHAG------GLPPYPEAQVEAVIAL 122
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI+ ++ I P+ VL H+D+AP K DPG +FPW +L G+G + P + +
Sbjct: 123 ARDILGRWPIPPERVLAHSDVAPERKEDPGEIFPWDRLAA-AGVGHHVPPARLQDGRFLA 181
Query: 204 KFKPARPYPRKLDRGIFLELLKA----YGYNVTITN-----KRSVIRAFKTHFSANQNPE 254
+ D G +E L+A YGY++ +T R+V+ AF+ HF P
Sbjct: 182 RG----------DAGQPVEALQAMFALYGYDLPVTGTFDARTRAVVTAFQRHF----RPA 227
Query: 255 RI--YADITT 262
R+ AD +T
Sbjct: 228 RVDGVADAST 237
>gi|144899235|emb|CAM76099.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 235
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 32/223 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++++R + L+LHYT A + + A + S+HY+I E G V+ +
Sbjct: 8 NHEARRVDVIDMLVLHYTGMPSAELALHRLCDPAAKV-SAHYLIDED-------GTVLAL 59
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP++ RAWHAG+ WR ++NS SIGI LVN G Y PF + QI L L
Sbjct: 60 VPEDRRAWHAGLSSWRGHTDINSRSIGIELVNPG------HEFGYRPFPDAQIDALIALA 113
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+ I+++ I + V+GH+DIAP K DPG LFPW +L YGIG W + VE + ++
Sbjct: 114 QKILTRHPITARNVVGHSDIAPSRKTDPGELFPWQRLK-SYGIGLWPFSGQEKVEWLPQE 172
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
L L YGY+ I++ + + AF+ HF
Sbjct: 173 ---------------SLRRLAEYGYD--ISDPVAAMTAFQRHF 198
>gi|319409088|emb|CBI82732.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella schoenbuchensis
R1]
Length = 261
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 25/252 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF I T L S+HY+I + E YL G + +V ++
Sbjct: 19 VRFLVMHYTAVNFETSIALLTGP----LVSAHYLIPDPSEKTYLEAGFKDIHIFNLVDEH 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+ W NLN SIGI +VN + + + P++ QI + L +I+
Sbjct: 75 ERAWHAGVSSWSEHNNLNDTSIGIEIVNLATTENEVFT--FPPYNPTQIDAIKELALNIL 132
Query: 149 SQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
++ I P V+GH+DIA G K DPG FPW +LY + GIGAW DE+ + +K
Sbjct: 133 QRYPDITPINVVGHSDIAIGRKNDPGAAFPWKQLY-EAGIGAWYD-DEL--KNCYQKEFC 188
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPERIYADITTE 263
K + + + LK YGY+ + + +IRAF+ HF E + E
Sbjct: 189 NHTCLEKAKKQVVAK-LKQYGYDTSTAKTKCGYKNLIRAFQLHFRQ----ENYNGILDAE 243
Query: 264 DMFWAWALVAKY 275
+ALV KY
Sbjct: 244 TTAIIYALVDKY 255
>gi|209884199|ref|YP_002288056.1| negative regulator of AmpC, AmpD [Oligotropha carboxidovorans OM5]
gi|209872395|gb|ACI92191.1| negative regulator of AmpC, AmpD [Oligotropha carboxidovorans OM5]
Length = 273
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 110/218 (50%), Gaps = 27/218 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT A + A SSHYV+ E G+V+Q+V + RAWH
Sbjct: 48 VELIVLHYTGMPEEDAALARLCD-AEAKVSSHYVVREN-------GEVVQLVAEEKRAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ WR ++NS SIGI +VN G G + P+ + QI + L +DI+++ I
Sbjct: 100 AGVSCWRGASDINSRSIGIEIVNPGHDG------DCPPYPDPQIAAVIALCRDILARNGI 153
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+ VL H+DIAP K DPG FPWG+L + G+G W+ P + +
Sbjct: 154 RRDQVLAHSDIAPTRKQDPGEWFPWGRLAAE-GVGLWVEPAPLDDTSGAEADA------- 205
Query: 214 KLDRGIFLELLKAYGYNVTITN----KRSVIRAFKTHF 247
+ F+ L YGY +T + K +V+ AF+ HF
Sbjct: 206 -GEAAAFIGALAGYGYGITPADPPEVKAAVVAAFQRHF 242
>gi|387891339|ref|YP_006321636.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
A506]
gi|387162146|gb|AFJ57345.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
A506]
Length = 258
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N +H V+++++HYT N + T H SSHY+I + G +
Sbjct: 23 NTSHPSVNHDNRVQFVVVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----GTI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGF-SDTPTGRVWYPYSEAQVQSLI 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+ W PD V
Sbjct: 133 VLLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLAVW--PDAQAVARF 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
++ P F E L GY T + R VI AF+ F
Sbjct: 190 QVQYAAQLP-----SITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRF 235
>gi|374620111|ref|ZP_09692645.1| negative regulator of beta-lactamase expression [gamma
proteobacterium HIMB55]
gi|374303338|gb|EHQ57522.1| negative regulator of beta-lactamase expression [gamma
proteobacterium HIMB55]
Length = 323
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 120/242 (49%), Gaps = 31/242 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KV 81
++++SR V +L++H+T +F + T + S+HY+I E G +V
Sbjct: 52 SNFNSR----VNHLVIHFTSEHFERSLAILTGETERRV-SAHYLIPELGDLTYSGDTLRV 106
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNG----------GVVGEKFRSTNYYP 131
++V + RAWHAG W LN SIGI +VN G E + + P
Sbjct: 107 YELVSTSDRAWHAGRSYWVGKTGLNDQSIGIEIVNQSGCEKDIATLGNSAEFATACTFKP 166
Query: 132 FDENQIHTL-GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F QI L LL + + I+P+ ++GH DIAP K+DPGPLFPW +L+ D GIGAW
Sbjct: 167 FGSEQIDMLVRLLNQTLEQHPDIRPEAIVGHADIAPTRKVDPGPLFPWKQLF-DAGIGAW 225
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKT 245
DE V +V YP ++ LL AYGY V++T + +RAF+
Sbjct: 226 F--DESRVTELVGLMS---HYPLTTEQQ--QALLLAYGYKVSVTGIEDEQSQLAVRAFQM 278
Query: 246 HF 247
HF
Sbjct: 279 HF 280
>gi|423689175|ref|ZP_17663695.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
SS101]
gi|387998505|gb|EIK59834.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
SS101]
Length = 258
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
N +H V+++++HYT N + T H SSHY+I + G +
Sbjct: 23 NTSHPSVNHDNRVQFVVVHYTSTNLERSLALLT----HGQVSSHYLIGDDAS-----GTI 73
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L
Sbjct: 74 YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGF-SDTPTGRVWYPYSEAQVQSLI 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+ W PD V
Sbjct: 133 VLLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLAVW--PDAQAVARF 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
++ P F E L GY T + R VI AF+ F
Sbjct: 190 QVQYAAQLP-----SITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRF 235
>gi|337742108|ref|YP_004633836.1| N-acetylmuramoyl-L-alanine amidase [Oligotropha carboxidovorans
OM5]
gi|386031125|ref|YP_005951900.1| N-acetylmuramoyl-L-alanine amidase [Oligotropha carboxidovorans
OM4]
gi|336096191|gb|AEI04017.1| N-acetylmuramoyl-L-alanine amidase [Oligotropha carboxidovorans
OM4]
gi|336099772|gb|AEI07595.1| N-acetylmuramoyl-L-alanine amidase [Oligotropha carboxidovorans
OM5]
Length = 291
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 110/218 (50%), Gaps = 27/218 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT A + A SSHYV+ E G+V+Q+V + RAWH
Sbjct: 66 VELIVLHYTGMPEEDAALARLCD-AEAKVSSHYVVREN-------GEVVQLVAEEKRAWH 117
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ WR ++NS SIGI +VN G G + P+ + QI + L +DI+++ I
Sbjct: 118 AGVSCWRGASDINSRSIGIEIVNPGHDG------DCPPYPDPQIAAVIALCRDILARNGI 171
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+ VL H+DIAP K DPG FPWG+L + G+G W+ P + +
Sbjct: 172 RRDQVLAHSDIAPTRKQDPGEWFPWGRLAAE-GVGLWVEPAPLDDTSGAEADA------- 223
Query: 214 KLDRGIFLELLKAYGYNVTITN----KRSVIRAFKTHF 247
+ F+ L YGY +T + K +V+ AF+ HF
Sbjct: 224 -GEAAAFIGALAGYGYGITPADPPEVKAAVVAAFQRHF 260
>gi|302188966|ref|ZP_07265639.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
syringae 642]
Length = 259
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYVVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V R+ + A P
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQ--RQAQLAVNLP- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + L GY+ T + R V+ AF+ H+
Sbjct: 199 --SISWFQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|423137357|ref|ZP_17125000.1| hypothetical protein HMPREF9942_01138 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371960290|gb|EHO77950.1| hypothetical protein HMPREF9942_01138 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 299
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++ILHYT + I TS+R SSH++I +++ K+ +VP RAWH
Sbjct: 64 VQFIILHYTATDNLGSIKELTSSRV----SSHFLILDEDD-----NKIYSLVPLEQRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 115 AGASAFRGRTNINDTSVGIEIVSDGIAKEYRSDPNPYHPYDHYVDYKPIQIEKAAQIIKY 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 175 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 228
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 229 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 283
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 284 LETFAILKALNKKY 297
>gi|423690259|ref|ZP_17664779.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
fluorescens SS101]
gi|388001597|gb|EIK62926.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
fluorescens SS101]
Length = 253
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIV 85
G V++L+LHYT +F+ I + T+ A S+HY+I + + Y+ G K+ +V
Sbjct: 16 GKRVRFLVLHYTAQDFSESIKSLTTGAA----SAHYLIPDPTDSSYIAAGHKGQKIFNLV 71
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV-VGEKFRSTNYYPFDENQIHTLGLLG 144
+ RAWHAG+ +W LN SIGI +VN V F +Y + +QI L L
Sbjct: 72 AEEDRAWHAGVSQWAGRSGLNDTSIGIEIVNQATDVDGVFTFPDY---EASQILALKQLA 128
Query: 145 KDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+I+ ++ + P+ V+ H+DIA G K DPGP PW +L + GIGAW D+ +R
Sbjct: 129 INILQRYPDMTPKNVIAHSDIAVGRKSDPGPKLPWKEL-AEAGIGAWY--DDSIKHKYLR 185
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYAD 259
+F P R +E +YGY + +++RAF+ HF PE
Sbjct: 186 RFNCQMP-----GREQVVEAFASYGYGIDAPASDVFFSALVRAFQLHF----RPENYNGV 236
Query: 260 ITTEDMFWAWALVAKYG 276
+ E +AL KY
Sbjct: 237 LDAETCAILYALNEKYA 253
>gi|332284954|ref|YP_004416865.1| exported hydrolase [Pusillimonas sp. T7-7]
gi|330428907|gb|AEC20241.1| putative exported hydrolase [Pusillimonas sp. T7-7]
Length = 257
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 48/230 (20%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++++LHYT + + + SSHY+++++ + V Q+V +N RAWH
Sbjct: 39 VEFVVLHYTSASNETSLKILSERNV----SSHYLVTKEARPH-----VYQLVGENRRAWH 89
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W ++NS SIGI +VN G GE+ + P+D Q+ + L +DI+ + +I
Sbjct: 90 AGVSAWFDRSDMNSGSIGIEIVNQGREGEQ-----WDPYDPVQMQVVAALLQDIIRRHQI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS----------------PDEMT 197
KP ++GH+DIAP K+DPGPLFPW +L D GIG W PD
Sbjct: 145 KPHNIVGHSDIAPQRKIDPGPLFPWKQL-ADQGIGRWYDEGKARLYEQEFLTMGLPDIAW 203
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
V+A +R+ P +LD+ ++VI AF+ H+
Sbjct: 204 VQAQLRRLGYTVPDSGELDKA-----------------SKNVIAAFQMHY 236
>gi|389871821|ref|YP_006379240.1| hydrolase [Advenella kashmirensis WT001]
gi|388537070|gb|AFK62258.1| hydrolase [Advenella kashmirensis WT001]
Length = 266
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V++++LHYT N + + T +R S+HY+I+++ + + +V
Sbjct: 35 DSR----VRFIVLHYTSENRSDSLRLLTQDRV----SAHYLITDEPVR------IFSLVD 80
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+N RAWHAG +W NLN+MSIGI +VN G + T + P+ +QI L L D
Sbjct: 81 ENRRAWHAGQSQWFEYPNLNAMSIGIEIVNAGPLDAAH--TRWAPYSSSQISMLAALLHD 138
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
I S+ + ++ H+DIAP K DPGP FPW L G+G W EA V +
Sbjct: 139 IQSRHHVSAWNIVAHSDIAPLRKSDPGPAFPWQALARQ-GLGRWYD------EAAVARRM 191
Query: 207 PARPYPRKLDRGIFLE-LLKAYGYNVTIT-----NKRSVIRAFKTHF 247
P R+L +++ LL GY + + R VIRAF+ H+
Sbjct: 192 PLLS-ARELKNAAYIQGLLSRIGYPIVQSGIWDPQTRQVIRAFQMHY 237
>gi|399026706|ref|ZP_10728395.1| negative regulator of beta-lactamase expression [Flavobacterium sp.
CF136]
gi|398075942|gb|EJL67042.1| negative regulator of beta-lactamase expression [Flavobacterium sp.
CF136]
Length = 301
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I F + S+HYVISE GKV+Q++ D +RAWHA
Sbjct: 101 FIIIHHTAQDSIQQTINTFIKTKTQ--VSAHYVISE-------NGKVVQMLNDYLRAWHA 151
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G W ++ +LNS SIGI L N G PF E QI +L L + + I
Sbjct: 152 GASTWGKNTDLNSSSIGIELDNNG----------SKPFTEAQISSLVALLTKLKKDYNIP 201
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
Q ++GH+DIAPG K DP LFPW K + G G W PDE+ EA P+ K
Sbjct: 202 TQNIIGHSDIAPGRKQDPSALFPW-KTLAEKGFGIW--PDEILEEA---------PFDFK 249
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
++ L+ GYN N + I AFK H+
Sbjct: 250 IEPA-----LRIIGYNT--KNLSAAIIAFKLHY 275
>gi|109900458|ref|YP_663713.1| hypothetical protein Patl_4160 [Pseudoalteromonas atlantica T6c]
gi|109702739|gb|ABG42659.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudoalteromonas atlantica T6c]
Length = 818
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 129/261 (49%), Gaps = 34/261 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
VK+L++H+T ++ + A S+HY+I E P +++++V ++ RA
Sbjct: 41 VKFLVMHFTAIDYQKSVHALVDEGGL---SAHYLIPESNDPSYPKDSLEILKLVDEDKRA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVN---------GGVVGE--KFRSTNYYPFDENQIHTL 140
WHAG W+ LN SIGI +VN E + R + +D QI L
Sbjct: 98 WHAGNSVWQGRSELNDSSIGIEIVNVPECHFDKEANTTSEHGENRLCVFPDYDPKQIELL 157
Query: 141 GLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L + I+++ I P V+GH+DIAP K DPGP FPW +LY GIGAW + T E
Sbjct: 158 IALSQQILARNPDISPTKVVGHSDIAPSRKNDPGPRFPWFELY-QAGIGAWYENE--TFE 214
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKR-----SVIRAFKTHFSANQNPE 254
A ++F +P + G+ L+AYGYNV T R +VI AF+ HF P
Sbjct: 215 AYWQRFNQYQP-----NIGLIQSALRAYGYNVLETGIRDEQTSNVISAFQMHFL----PW 265
Query: 255 RIYADITTEDMFWAWALVAKY 275
++ ++ +AL+ KY
Sbjct: 266 QVTGKADSKTAAAVFALLDKY 286
>gi|395800161|ref|ZP_10479440.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. Ag1]
gi|343475222|emb|CCD13322.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|395336003|gb|EJF67865.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. Ag1]
Length = 258
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 23/222 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQFVVVHYTSASLERSLALLT----HGQVSSHYLIGDNAS-----ATIYKLVDESQRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G + +YP+ E Q+ +L +L KDI + I
Sbjct: 86 AGESEWMGRTWLNSSSIGIEIVNPGY-RDLPTGRVWYPYSEAQVQSLVVLLKDITKRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L D G+G W PD V ++ P
Sbjct: 145 DPRNIIGHSDIAPLRKLDPGPLFPWKRLA-DEGLGMW--PDAKAVARYQVQYAADLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
F E L GY T + R V+ AF+ HF A+
Sbjct: 199 --SITWFQEELAKLGYPTPQTGELDVATRHVVAAFQMHFRAS 238
>gi|425896757|ref|ZP_18873348.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397882115|gb|EJK98603.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 259
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R V+++++HYT + + T H SSHY+I + + + ++
Sbjct: 30 NFDER----VQFVVVHYTSASMERSLQLLT----HGQVSSHYLIGDDKA-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V + RAWHAG +W+ LNS SIGI +VN G FR +YP+ E Q+ +L
Sbjct: 77 VDEQYRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FRDLPTGRVWYPYSEAQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I PQ+++GH+DIAP K+DPGPLFPW +L + G+G W P+ V
Sbjct: 132 IVLLKDISKRNNIAPQHIIGHSDIAPLRKLDPGPLFPWKRL-AEAGLGRW--PNAQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P F + L GY T + R V+ AF+ H+
Sbjct: 189 QQAFFAASLP-----SIAWFQQELARLGYETPQTGELDVATRHVLAAFQMHY 235
>gi|398828746|ref|ZP_10586946.1| negative regulator of beta-lactamase expression [Phyllobacterium
sp. YR531]
gi|398217604|gb|EJN04121.1| negative regulator of beta-lactamase expression [Phyllobacterium
sp. YR531]
Length = 254
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 42/246 (17%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
+DG LILHYT + +N + S+HYV+ E G+++Q+VP+
Sbjct: 23 KDGKRPHILILHYTGMETGEAAENWLANPESEV-SAHYVVHED-------GRIVQLVPET 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG G W+ + ++NS S+GI +VNGG + + F Q+ + L K I+
Sbjct: 75 ERAWHAGKGSWKGETDINSCSVGIEIVNGGPL------LAFPMFPGEQVDAVIDLCKGII 128
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
S+ I+P+ VL H+D+AP K+DPG FPW L+ + G+G W+ P A VR +
Sbjct: 129 SRHGIRPENVLAHSDVAPARKIDPGEKFPWPVLF-NAGVGHWVDP------APVRGGR-- 179
Query: 209 RPYPRKLDRGIFLELLKA----YGYNVTI------TNKRSVIRAFKTHFSANQNPERI-- 256
+ D+G +E L++ YGY V I + SV+ AF+ HF P ++
Sbjct: 180 --FFSAGDQGQPVEALQSMLALYGYGVPIDGVFGNATELSVL-AFQRHF----RPTKVDG 232
Query: 257 YADITT 262
AD++T
Sbjct: 233 VADMST 238
>gi|390572932|ref|ZP_10253125.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia terrae BS001]
gi|389935185|gb|EIM97120.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Burkholderia terrae BS001]
Length = 197
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 13/168 (7%)
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
+P++ RAWHAG+ W+ LN+ SIGI VN G + + + + P+ Q++ + L
Sbjct: 1 MPESQRAWHAGLSSWQGTTELNAASIGIENVNLGPI-DTPQGRTWQPYPPEQVNAMIRLA 59
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDIV+++ I P ++GH+DIAP K+DPGPLFPW +LY D G+GAW PD+ TV +
Sbjct: 60 KDIVTRYNIPPTRIVGHSDIAPQRKIDPGPLFPWKQLY-DAGVGAW--PDDATVAKELAG 116
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVT---ITNKRS--VIRAFKTHF 247
P P D + L YGY V + N + V AF+ HF
Sbjct: 117 RDPHAP----TDVRALQQKLARYGYEVATDGVLNDSTWRVFAAFQMHF 160
>gi|440723192|ref|ZP_20903559.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP34876]
gi|440728344|ref|ZP_20908560.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP34881]
gi|440360272|gb|ELP97556.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP34876]
gi|440361837|gb|ELP99053.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae BRIP34881]
Length = 259
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYVVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSAPQTGELDVATRQVLAAFQMHY 235
>gi|19703509|ref|NP_603071.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713599|gb|AAL94370.1| Anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 288
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++I+HYT + A I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 53 IQFIIVHYTATDNAGAIKELTSSRV----SSHFLVLDEDD-----NKIYSLVPLEQRAWH 103
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 104 AGASAFRGRTNINDTSVGIEIVSEGIAKEFVPDPNPYHPYDHYVDYKPIQIEKTAQIIKY 163
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 164 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 217
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 218 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 272
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 273 LETFAILKALNKKY 286
>gi|256846338|ref|ZP_05551795.1| glutaminase [Fusobacterium sp. 3_1_36A2]
gi|256718107|gb|EEU31663.1| glutaminase [Fusobacterium sp. 3_1_36A2]
Length = 301
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++ILHYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 66 VQFIILHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 116
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 117 AGASAFRGRTNINDTSVGIEIVSDGIAKEFIADPNPYHPYDHYVDYKPIQIEKAAQIIKY 176
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 177 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 230
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 231 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 285
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 286 LETFAILKALNKKY 299
>gi|294784580|ref|ZP_06749869.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
3_1_27]
gi|294487796|gb|EFG35155.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
3_1_27]
Length = 301
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++ILHYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 66 VQFIILHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 116
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 117 AGASAFRGRTNINDTSVGIEIVSDGIAKEFIADPNPYHPYDHYVDYKPIQIEKAAQIIKY 176
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 177 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 230
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 231 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 285
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 286 LETFAILKALNKKY 299
>gi|170742496|ref|YP_001771151.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium sp. 4-46]
gi|168196770|gb|ACA18717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium sp. 4-46]
Length = 249
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 40/240 (16%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V L+LHYT A +N + S HY + E G+V+Q+VP+ RAWH
Sbjct: 26 VDMLLLHYTGMPDAGEALLRLANPLSEV-SCHYFVFED-------GRVVQMVPEGRRAWH 77
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W +R++NS SIG+ + + G G P+ E Q+ + L +DI++++ I
Sbjct: 78 AGEAAWEGERDVNSRSIGVEIAHPGHAG------GLPPYPEAQVAAVIALSRDILARWPI 131
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+ VLGH+D+AP K DPG FPW +L+ + GIG ++ P +R + +
Sbjct: 132 RADRVLGHSDVAPARKQDPGETFPWARLHRE-GIGHFVPP------VPIRDGR----FFA 180
Query: 214 KLDRGIFLELLKA----YGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
+ D G +E L+A YGY+ +T + R+V+ AF+ HF PER+ AD +T
Sbjct: 181 EGDAGQPIEALQAMFALYGYDQPVTGRFDSGMRAVVEAFQRHF----RPERVDGVADSST 236
>gi|289674478|ref|ZP_06495368.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
syringae FF5]
gi|443641004|ref|ZP_21124854.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
syringae B64]
gi|443281021|gb|ELS40026.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv.
syringae B64]
Length = 259
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYVVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|296328072|ref|ZP_06870606.1| N-acetylmuramoyl-L-alanine amidase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154848|gb|EFG95631.1| N-acetylmuramoyl-L-alanine amidase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 301
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++I+HYT + A I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 66 IQFIIVHYTATDNAGAIKELTSSRV----SSHFLVLDEDD-----NKIYSLVPLEQRAWH 116
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 117 AGASAFRGRTNINDTSVGIEIVSEGIAKEFVPDPNPYHPYDHYVDYKPIQIEKTAQIIKY 176
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 177 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 230
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 231 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 285
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 286 LETFAILKALNKKY 299
>gi|421525945|ref|ZP_15972554.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
ChDC F128]
gi|402257704|gb|EJU08177.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
ChDC F128]
Length = 300
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + A I T+N+ SSH+++ +++ K+ +VP RAWH
Sbjct: 65 IQFIVVHYTAIDNAASIKELTTNKV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 115
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + + K
Sbjct: 116 AGASAFRGRTNINDTSVGIEIVSDGIAKEFISDPNPYHPYDHYVDYKPIQIEKVAQIIKY 175
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + + ++ H+DIAP K DPG FPW +LY Y IGAW EA + F
Sbjct: 176 VAEKYNVPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQTFM 229
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 230 DEEKFKATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNATGEMD 284
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 285 LETFAILKALNKKY 298
>gi|421141565|ref|ZP_15601547.1| AmpD [Pseudomonas fluorescens BBc6R8]
gi|404507232|gb|EKA21220.1| AmpD [Pseudomonas fluorescens BBc6R8]
Length = 258
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 23/222 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++++HYT + + T H SSHY+I + + ++V ++ RAWH
Sbjct: 35 VQFVVVHYTSASLERSLALLT----HGQVSSHYLIGDDAS-----ATIYKLVDESQRAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G + +YP+ E Q+ +L +L KDI + I
Sbjct: 86 AGESEWMGRTWLNSSSIGIEIVNPGY-RDLPTGRVWYPYSEAQVQSLVVLLKDISKRNGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ ++GH+DIAP K+DPGPLFPW +L D G+G W PD V ++ P
Sbjct: 145 DPRNIIGHSDIAPLRKLDPGPLFPWKRL-ADEGLGMW--PDAKAVARYQVQYAADLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
F E L GY T + R V+ AF+ HF A+
Sbjct: 199 --SITWFQEELAKLGYPTPQTGELDVATRHVVAAFQMHFRAS 238
>gi|338737166|ref|YP_004674128.1| N-acetylmuramoyl-L-alanine amidase [Hyphomicrobium sp. MC1]
gi|337757729|emb|CCB63552.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Hyphomicrobium
sp. MC1]
Length = 256
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 29/246 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R G+ L+LHYT A + S R + S HYV+ E G V Q
Sbjct: 18 NREPRRGGVKPSLLVLHYTGMASAAKAIDWLS-RPESGVSCHYVVDEH-------GVVTQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGL 142
+VP+ RAWHAG+ WR + ++NS SIGI + N G N YP F Q+ ++
Sbjct: 70 LVPEEFRAWHAGVSNWRGETDINSHSIGIEIHNPG-------HQNGYPDFPAAQMRSVIA 122
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L KDIV + I+P+ +L H+D+APG K+DPG F W L G+G W+ P + V A
Sbjct: 123 LSKDIVRRNHIRPENILAHSDVAPGRKIDPGEKFNW-LLMAREGLGLWVRP--LPVRADD 179
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIY 257
+ PR L+ L AYGY + + + V++AF+ HF + R+
Sbjct: 180 PGLELGAEGPRVLN---AQRNLAAYGYGIDTSGVLDADTEKVLKAFQLHFRPRRVDGRL- 235
Query: 258 ADITTE 263
D +TE
Sbjct: 236 -DRSTE 240
>gi|260496862|ref|ZP_05815982.1| glutaminase [Fusobacterium sp. 3_1_33]
gi|336419721|ref|ZP_08599975.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
11_3_2]
gi|260196604|gb|EEW94131.1| glutaminase [Fusobacterium sp. 3_1_33]
gi|336162735|gb|EGN65681.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
11_3_2]
Length = 298
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 122/254 (48%), Gaps = 33/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K++ILHYT + I T S+H+++ +++ K+ +VP RAWH
Sbjct: 64 IKFIILHYTALDNVGSIRELTGGV-----SAHFLVLDEDD-----NKIYSLVPLEQRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG+ +R N+N S+GI +VN G+ E N Y+P+D QI + + K
Sbjct: 114 AGVSAFRGRTNINDTSVGIEIVNDGIAKEYRSDPNPYHPYDHYVDYKPIQIEKVAQIIKY 173
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW EA +KF
Sbjct: 174 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQKFM 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 228 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 282
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 283 LETFAILKALNKKY 296
>gi|417517337|ref|ZP_12179939.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353651936|gb|EHC93906.1| N-acetylmuramoyl-L-alanine amidase [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
Length = 186
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 102/203 (50%), Gaps = 28/203 (13%)
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIH 138
+P+ +AWHAG+ WR LN SIGI L N GGV ++ PF+ QI
Sbjct: 1 MPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWQMSGGV-------KSFAPFESAQIQ 53
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L KDI++++ IKPQ V+ H DIAP K DPGP FPW +L GIGAW PD V
Sbjct: 54 ALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQ-GIGAW--PDAQRV 110
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPE 254
+ R +D L LL YGY V T ++ VI AF+ HF Q
Sbjct: 111 AF----YLAGRAQYTPVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQ--W 164
Query: 255 RIYADITTEDMFWAWALVAKYGS 277
AD T+ + A AL+ KYG
Sbjct: 165 NGIADAETQAI--AEALLEKYGQ 185
>gi|395651412|ref|ZP_10439262.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 258
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 27/228 (11%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
+YD+R V+++++HYT + + T H SSHY+I + + ++
Sbjct: 30 NYDNR----VQFVVVHYTSASLDRSLALLT----HGQVSSHYLIGDDAS-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V ++ RAWHAG +W LNS SIGI +VN G + +YP+ E Q+ +L +L
Sbjct: 77 VDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGY-KDTPTGRLWYPYSEAQVKSLVVLL 135
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
KDI + I P+ ++GH+DIAP K+DPGPLFPW +L + G+G W P+ V +
Sbjct: 136 KDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLAAE-GLGMW--PEAQAVARFKAQ 192
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ P F E L GY T + R VI AF+ HF
Sbjct: 193 YATELP-----SITWFQEELARLGYQTPQTGELDVATRHVIAAFQMHF 235
>gi|422632502|ref|ZP_16697669.1| N-acetylmuramoyl-L-alanine amidase, partial [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330942544|gb|EGH45126.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 235
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 29/222 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYIVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV---EAIVRKFKPARP 210
P++++GH DIAP K DPGPLFPW +L + G+G W PDE V +A++ P+
Sbjct: 145 DPKHIIGHNDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQVAQRQALLAVNLPSIT 201
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ F + L GY+ T + R V+ AF+ H+
Sbjct: 202 W--------FQQQLARLGYSTPQTGELDVATRQVLAAFQMHY 235
>gi|337268009|ref|YP_004612064.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Mesorhizobium opportunistum WSM2075]
gi|336028319|gb|AEH87970.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Mesorhizobium opportunistum WSM2075]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 116/246 (47%), Gaps = 27/246 (10%)
Query: 8 MPGYVID-PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
M G++ D P E + N RD + ++LHYT A+ + + SSHY
Sbjct: 1 MSGFLPDEPRAEVRVSPNFGPRRDTLKPDMIVLHYTGMATGAGAEAWLCDPESEV-SSHY 59
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
++ E G ++Q+V ++ RAWHAG W ++NS SIGI +VN G S
Sbjct: 60 LVHEN-------GHIVQMVRESDRAWHAGKSSWFGRSDINSCSIGIEIVNPG------HS 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
Y F QI + L K I ++ I VL H+D+APG K+DPG FPWG L+ + G
Sbjct: 107 LGYRGFPRRQIDAVIGLCKGIAARHAIPATRVLAHSDVAPGRKVDPGEKFPWGALF-EAG 165
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIR 241
+G + A VR+ P R D +L YGY V I+ R V+
Sbjct: 166 VG------HLVPAAPVRRGATLGPGARGADVEALQSMLALYGYGVEISGVFDHQTRIVVE 219
Query: 242 AFKTHF 247
AF+ HF
Sbjct: 220 AFQRHF 225
>gi|163856057|ref|YP_001630355.1| N-acetylmuramoyl-L-alanine amidase [Bordetella petrii DSM 12804]
gi|163259785|emb|CAP42086.1| probable N-acetylmuramoyl-L-alanine amidase [Bordetella petrii]
Length = 315
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR V+Y++LHYT + + S+HY+I++ +V ++V
Sbjct: 79 DSR----VRYIVLHYTSAEAPVSLKLLSQGGV----SAHYLITDDARP-----RVYRLVD 125
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ AWHAG +W LN MSIGI LVN G + ++ P+ + QI L LL +D
Sbjct: 126 ETRSAWHAGESRWYEQAWLNPMSIGIELVNTGRADHAHGAPDWQPYPDAQIQALVLLLRD 185
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE--AIVRK 204
++ + + P+ V+GH+DIAP K DPGPLFPW +L D GIG W + A+ R+
Sbjct: 186 LIVRHHVHPENVVGHSDIAPQRKTDPGPLFPWKRL-ADAGIGRWYDEAQAAANWVALQRQ 244
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P D F L GY K R+VI AF+ H+
Sbjct: 245 GLP--------DIAWFQHQLARLGYACPQHGKLDRATRNVIAAFQMHY 284
>gi|445063214|ref|ZP_21375451.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hampsonii 30599]
gi|444505406|gb|ELV05931.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hampsonii 30599]
Length = 342
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 119/259 (45%), Gaps = 46/259 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ +KY+ILHYT N T S+HY+I+ K+ + + ++V DN R
Sbjct: 47 NLRIKYIILHYTALNDDLSFKVLTDPGV----SAHYLITTKKDE-----PIYKLVDDNDR 97
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG------EKFRSTN--------------YY 130
AWHAG+ + +N SIGI +VN G + E R Y
Sbjct: 98 AWHAGVTMFDNRLTMNDTSIGIEIVNLGFLRKVTNTYEDLRRMTKKQREDLFFIPYDEYI 157
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+E+QI + L K++ ++ IKP +LGH+DIAP K DPGP FPW +L+ +Y +G W
Sbjct: 158 EFEESQIEKVAYLLKELTEKYGIKPYNILGHSDIAPYRKKDPGPKFPWKRLHDEYNLGMW 217
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAFK 244
E F Y + I E +K YGY TN R V+ AF+
Sbjct: 218 YD------EYDYSNFLNDNEYRKAKVMDIKEEFIK-YGYTSMPTNNVWDFDSRKVLYAFQ 270
Query: 245 THFSANQNPERIYADITTE 263
HF PE+I +I E
Sbjct: 271 CHFR----PEKIDGNIDNE 285
>gi|296447409|ref|ZP_06889335.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylosinus trichosporium OB3b]
gi|296255112|gb|EFH02213.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylosinus trichosporium OB3b]
Length = 249
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 29/220 (13%)
Query: 34 VKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAW 92
V LILHYT + + A + TS A SSHY + E G ++Q+VP+ RAW
Sbjct: 25 VSSLILHYTGMPSAAGALRLLTSEEAQV--SSHYFVDED-------GTILQLVPEARRAW 75
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK 152
HAG W + ++NS SIGI +V+ G V + +PF + QI + L +DI ++
Sbjct: 76 HAGRSFWAGEEDMNSASIGIEIVHPGHV-------DPHPFPDRQIEAVAQLCRDICARNA 128
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P+ VLGH+DIA G K+DPG FPW L + G+G ++ P + A + P
Sbjct: 129 IAPRRVLGHSDIAIGRKIDPGEFFPWRALA-ECGVGHFVEPAPIVGGAAL------EPGA 181
Query: 213 RKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+ + L YGY ++ +V+ AF+ HF
Sbjct: 182 EGGEVSALQQALADYGYKSPVSGCYDEGAAAVVAAFQRHF 221
>gi|378826605|ref|YP_005189337.1| N-acetylmuramoyl-L-alanine amidase [Sinorhizobium fredii HH103]
gi|365179657|emb|CCE96512.1| N-acetylmuramoyl-L-alanine amidase [Sinorhizobium fredii HH103]
Length = 254
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 121/265 (45%), Gaps = 36/265 (13%)
Query: 8 MPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFT-SNRAHNLHSSHY 66
PG P P NH + G ++LHYT A I+A R + SSHY
Sbjct: 8 FPGARFVPSP------NHSERAGGRRPDMILLHYTGMETA--ISALDWLCREESQVSSHY 59
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
+ E G++ Q+VP+ RAWHAG W+ + ++NS SIGI + NGG
Sbjct: 60 FVHED-------GRIDQLVPEERRAWHAGKSLWKGEADINSCSIGIEIANGG------HP 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
F E QI + L +D ++ I P+ VL H+D+AP K+DPG FPW L+ G
Sbjct: 107 AGLPDFPEAQIDAVVELCRDCGERWHIAPERVLAHSDVAPIRKVDPGENFPWDVLHR-RG 165
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIR 241
+G W+ P + ++ +P +L YGYN+ +T V+
Sbjct: 166 VGHWVEPAPVGGGRFFQRGDGGQPVE------ALQSMLSLYGYNIEVTGDFCERTEGVVA 219
Query: 242 AFKTHFSANQNPERIYADITTEDMF 266
AF+ HF Q+ AD++T D
Sbjct: 220 AFQRHF--RQSRVDGIADVSTIDTL 242
>gi|399006378|ref|ZP_10708904.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
gi|398122299|gb|EJM11896.1| negative regulator of beta-lactamase expression [Pseudomonas sp.
GM17]
Length = 259
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R V+++++HYT + + T H SSHY+I + + + ++
Sbjct: 30 NFDER----VQFVVVHYTSASMERSLQLLT----HGQVSSHYLIGDDKA-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V + RAWHAG +W+ LNS SIGI +VN G FR +YP+ E Q+ +L
Sbjct: 77 VDEQYRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FRDLPTGRVWYPYSEAQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I PQ+++GH+DIAP K+DPGPLFPW +L + G+G W P+ V
Sbjct: 132 IVLLKDISKRNNIAPQHIIGHSDIAPLRKLDPGPLFPWKRL-AEAGLGRW--PNAQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P +G L GY T + R V+ AF+ H+
Sbjct: 189 QQAFFAAQLPSIAWFQQG-----LARLGYETPQTGELDVATRHVLAAFQMHY 235
>gi|418055244|ref|ZP_12693299.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hyphomicrobium denitrificans 1NES1]
gi|353210826|gb|EHB76227.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hyphomicrobium denitrificans 1NES1]
Length = 256
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 115/246 (46%), Gaps = 29/246 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R G+ LILHYT + A + + RA + S HYV+ E G++ Q
Sbjct: 18 NREPRRGGVRPSLLILHYTGMSSAAKAIDWLA-RADSSVSCHYVVDED-------GRITQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ MRAWHAG WR + ++NS SIGI + N G Y F Q+H + L
Sbjct: 70 LVPEGMRAWHAGASYWRGETDINSHSIGIEIQNPG------HQHGYPDFPAAQMHAVIAL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
GKDI + + VL H+DIAP K+DPG F W L G+G W+ P ++VR
Sbjct: 124 GKDITRRHGMAADAVLAHSDIAPARKIDPGEKFNW-MLLAREGLGLWVRP------SLVR 176
Query: 204 KFKPARPYPRKLDR-GIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIY 257
P R E L YGY V T V++AF+ HF + R+
Sbjct: 177 ADDPGLGLGESGSRVAGVQEQLALYGYRVEPTGVLDETTNHVLKAFQAHFRPRRVDGRL- 235
Query: 258 ADITTE 263
D +TE
Sbjct: 236 -DRSTE 240
>gi|422939896|ref|ZP_16967264.1| N-acetylmuramoyl-L-alanine amidase [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339890131|gb|EGQ79306.1| N-acetylmuramoyl-L-alanine amidase [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 298
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 33/255 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K++ILHYT + I T S+H+++ +++ K+ +VP RAWH
Sbjct: 64 IKFIILHYTALDNVGSIRELTGGV-----SAHFLVLDEDD-----NKIYSLVPLEQRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG+ +R N+N S+GI +VN G+ E N Y+P+D QI + + K
Sbjct: 114 AGVSAFRGRTNINDTSVGIEIVNDGIAKEYRSDPNPYHPYDHYVDYKPIQIEKVAQIIKY 173
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 174 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY V ++ + V+ AF+ HF NP+ ++
Sbjct: 228 DEEKFKTTSIREIKDELRK-YGYEVNRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 282
Query: 262 TEDMFWAWALVAKYG 276
E AL KY
Sbjct: 283 LETFAILKALNKKYS 297
>gi|296126668|ref|YP_003633920.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira murdochii DSM
12563]
gi|296018484|gb|ADG71721.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Brachyspira murdochii DSM 12563]
Length = 344
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 48/271 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ +KY+ILHYT + + T S+HY+I+ +E + ++V DN R
Sbjct: 47 NLRIKYIILHYTALDDDLSLKVLTDPGV----SAHYLITTREN-----DPIYKLVDDNNR 97
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN---------------------Y 129
AWHAG+ + +N SIGI +VN G + EK +T Y
Sbjct: 98 AWHAGVTMFDNRLTMNDTSIGIEIVNLGFL-EKVTNTQEQLRRMTKRERENLFFIPYDEY 156
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
++E+QI + L ++++ ++ +KP +LGH+DIAP K DPGP FPW +L+ +Y +G
Sbjct: 157 LEYNESQIQKVVYLLRNLIDKYGVKPYNILGHSDIAPYRKKDPGPKFPWKRLHDEYNLGM 216
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAF 243
W + T ++K A+ K E YGY TN R V+ AF
Sbjct: 217 WYDEYDYTNFLNDNEYKKAKVLDIK-------EEFVKYGYTSMPTNNIWDFDSRKVLYAF 269
Query: 244 KTHFSANQNPERIYADITTEDMFWAWALVAK 274
+ HF PE+I +I E AL K
Sbjct: 270 QCHFR----PEKIDGNIDNESYAIIRALNEK 296
>gi|389680570|ref|ZP_10171920.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
O6]
gi|388555675|gb|EIM18918.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas chlororaphis
O6]
Length = 259
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R V+++++HYT + + T H SSHY+I + + + ++
Sbjct: 30 NFDER----VQFVVVHYTSASMERSLQLLT----HGQVSSHYLIGDDKA-----ATIYKL 76
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTL 140
V + RAWHAG +W+ LNS SIGI +VN G FR +YP+ E Q+ +L
Sbjct: 77 VDEQYRAWHAGESQWQGRTWLNSSSIGIEIVNPG-----FRDLPTGRVWYPYSEAQVQSL 131
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+L KDI + I PQ+++GH+DIAP K+DPGPLFPW +L + G+G W P+ V
Sbjct: 132 IVLLKDISKRNNIAPQHIIGHSDIAPLRKLDPGPLFPWKRL-AEAGLGRW--PNAQAVAR 188
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F P +G L GY T + R V+ AF+ H+
Sbjct: 189 QEAFFAAQLPSIAWFQQG-----LARLGYETPQTGELDVATRHVLAAFQMHY 235
>gi|83944521|ref|ZP_00956973.1| N-acetylmuramoyl-L-alanine amidase, putative [Sulfitobacter sp.
EE-36]
gi|83844627|gb|EAP82512.1| N-acetylmuramoyl-L-alanine amidase, putative [Sulfitobacter sp.
EE-36]
Length = 222
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 18/158 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R+G+ ++LHYT + A A + A + S+HY+I+ K G+ +
Sbjct: 12 NHGPRRNGLRPSLIVLHYTAMDSAEAACARLCDPAAEV-SAHYLITGK-------GETVP 63
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP++ RAWHAG G+W+ ++NS SIGI L N G +PF E Q+ TL L
Sbjct: 64 LVPEDQRAWHAGAGEWQGQDDINSRSIGIELDNRG----------NHPFSEPQMVTLETL 113
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ I+ ++ I P+ V+GH+D+APG K+DPGP F W +L
Sbjct: 114 LRGIMERWSIPPEGVIGHSDMAPGRKIDPGPRFDWPRL 151
>gi|34762563|ref|ZP_00143559.1| ANHYDRO-N-ACETYLMURAMYL-TRIPEPTIDE AMIDASE [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887784|gb|EAA24857.1| ANHYDRO-N-ACETYLMURAMYL-TRIPEPTIDE AMIDASE [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 286
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++ILHYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 51 IQFIILHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 101
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 102 AGTSAFRGRTNINDTSVGIEIVSDGIAREYRGDPNTYHPYDHYVDYKPIQIEKAAQIIKY 161
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 162 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 215
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 216 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 270
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 271 LETFAILKALNKKY 284
>gi|222149148|ref|YP_002550105.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium vitis S4]
gi|221736133|gb|ACM37096.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium vitis S4]
Length = 252
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 131/277 (47%), Gaps = 47/277 (16%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M + I P V+ P P NH + + + +ILHYT ++
Sbjct: 1 MTAFIADYPDAVVVPSP------NHGERIECAAPDTIILHYTGMPSEEAALSWLCTVESQ 54
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+ SSHY++ E G V+Q+VP++ RAWHAG W ++NS SIGI + N G
Sbjct: 55 V-SSHYLVREN-------GDVVQMVPESRRAWHAGKSFWAGATDINSRSIGIEIANAG-- 104
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
S YP E Q+ + L D S++ I P+ VL H+DIAP K+DPG FPW +
Sbjct: 105 ---HPSLPDYP--EKQVDAVAQLCLDCASRWSIAPERVLAHSDIAPVRKVDPGEHFPWDQ 159
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK 236
L+ G+G W+ P +T R F+ + DRG +E L++ YGY V I
Sbjct: 160 LHA-LGVGHWVEPTAITGG---RFFQ-------RGDRGQPVEALQSMLSLYGYPVEINAD 208
Query: 237 -----RSVIRAFKTHFSANQNPERI--YADITTEDMF 266
V+R+F+ HF P ++ AD +T D
Sbjct: 209 FDAVTEGVVRSFQLHF----RPSKVDGVADYSTIDTL 241
>gi|429123242|ref|ZP_19183775.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hampsonii 30446]
gi|426280842|gb|EKV57846.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira hampsonii 30446]
Length = 342
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 120/259 (46%), Gaps = 46/259 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ +KY+ILHYT N T S+HY+I+ K+ + + ++V DN R
Sbjct: 47 NLRIKYIILHYTALNDDLSFKVLTDPGV----SAHYLITTKKDE-----PIYKLVDDNDR 97
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG------EKFRSTN--------------YY 130
AWHAG+ + +N SIGI +VN G + E R Y
Sbjct: 98 AWHAGVTMFDNRLTMNDTSIGIEIVNLGFLRKVTNTYEDLRRMTKKQREDLFFIPYDEYI 157
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F+++QI + L K+++ ++ IKP +LGH+DIAP K DPGP FPW +L+ +Y +G W
Sbjct: 158 EFEDSQIEKVAYLLKELIEKYGIKPYNILGHSDIAPYRKKDPGPKFPWKRLHDEYNLGIW 217
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAFK 244
E F Y + I E +K YGY TN R V+ AF+
Sbjct: 218 YD------EYDYSNFLNDNEYRKAKVMDIKEEFIK-YGYTSMPTNNVWDFDSRKVLYAFQ 270
Query: 245 THFSANQNPERIYADITTE 263
HF PE+I +I E
Sbjct: 271 CHFR----PEKIDGNIDNE 285
>gi|237741202|ref|ZP_04571683.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
4_1_13]
gi|229430734|gb|EEO40946.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp.
4_1_13]
Length = 286
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++ILHYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 51 IQFIILHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 101
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 102 AGASAFRGRTNINDTSVGIEIVSDGIAREYRGDPNTYHPYDHYVDYKPIQIEKAAQIIKY 161
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 162 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 215
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 216 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 270
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 271 LETFAILKALNKKY 284
>gi|121602079|ref|YP_988770.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis KC583]
gi|421760575|ref|ZP_16197391.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis INS]
gi|120614256|gb|ABM44857.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis KC583]
gi|411174992|gb|EKS45019.1| N-acetylmuramoyl-L-alanine amidase family protein [Bartonella
bacilliformis INS]
Length = 257
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 28/264 (10%)
Query: 24 NHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG- 79
N Y S G + V++L++HYT NF I + T S+HY++ + E Y+ G
Sbjct: 7 NKYRSVKGFNNRVRFLVMHYTAVNFEKSIASLTGADV----SAHYLVPDPMEETYIASGF 62
Query: 80 ---KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
+ +V ++ R+WHAG+ W NLN +IGI V+ + EK + P++ NQ
Sbjct: 63 KGVHIFNLVDEDKRSWHAGVSSWAGRANLNDTAIGIETVS--LATEKDGVFTFPPYNLNQ 120
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DI+ G K DPG FPW +LY + GIGAW DE
Sbjct: 121 IDAIKKLSLNILQRYPDITPTNVVGHSDISIGRKSDPGAAFPWKELY-EAGIGAWY--DE 177
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
F P K + + LK YGY+ + + +++IRAF+ HF +
Sbjct: 178 EVKNKYYHHFLREIKLPSKEE---VITRLKRYGYDTSAADSDKGFKNLIRAFQLHFR-QK 233
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + + + E + +AL+ KY
Sbjct: 234 NYDGV---LDIETLAILYALLDKY 254
>gi|150397305|ref|YP_001327772.1| N-acetylmuramoyl-L-alanine amidase [Sinorhizobium medicae WSM419]
gi|150028820|gb|ABR60937.1| N-acetylmuramoyl-L-alanine amidase family 2 [Sinorhizobium medicae
WSM419]
Length = 254
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 128/275 (46%), Gaps = 42/275 (15%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M SS PG + P P NH + G +ILHYT A + +
Sbjct: 1 MTSSTCDFPGARLVPSP------NHGERAGGRRPDMIILHYTGMETAASALDWLCRKESQ 54
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+ S HY + E+ G++ Q+VP+ RAWHAG W+ + ++NS SIGI + N G
Sbjct: 55 V-SCHYFVDEE-------GRIAQLVPEERRAWHAGKSFWKGETDINSCSIGIEIANAGHP 106
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
G F + Q+ + L D +++I P+ VL H+DIAP K+DPG FPW
Sbjct: 107 G------GLPDFPKAQVAAVAELCLDCGERWEIAPERVLAHSDIAPIRKVDPGENFPWDV 160
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK 236
L+ G+G W+ P A VR + + + D G +E L++ YGY V IT +
Sbjct: 161 LF-RRGVGHWVEP------APVRGGR----FFQCGDCGQPVEALQSMLLLYGYGVEITGE 209
Query: 237 -----RSVIRAFKTHFSANQNPERIYADITTEDMF 266
+ AF+ HF Q+ AD++T D
Sbjct: 210 FCQKTEGAVAAFQRHF--RQSRVDGIADVSTIDTL 242
>gi|418939996|ref|ZP_13493376.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium sp. PDO1-076]
gi|375053292|gb|EHS49691.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium sp. PDO1-076]
Length = 253
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 26/216 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
L+LHYT A+ N + SSHY++ E G+V+Q+VP++ RAWHAG
Sbjct: 31 LLLHYTGMPTGEGAQAWLCNPDSQV-SSHYIVHED-------GRVVQMVPEDRRAWHAGQ 82
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W + ++NS SIGI + N G + + QI +L L ++ V + +I P+
Sbjct: 83 SSWAGETDINSRSIGIEIANAG------HPAGLPDYPDRQIESLIELCRECVERHQIAPE 136
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D+AP K+DPG FPW KLY G+G W+ P + ++ +P
Sbjct: 137 RVLAHSDVAPVRKVDPGENFPWSKLY-HAGVGHWVEPAPLGGGRFFQRGDQGQPVE---- 191
Query: 217 RGIFLELLKAYGYNVTI-----TNKRSVIRAFKTHF 247
+L YGY + I V+ AF+ HF
Sbjct: 192 --ALQSMLSIYGYTLEINGDYCARTEGVVAAFQRHF 225
>gi|238749324|ref|ZP_04610829.1| Negative regulator of beta-lactamase expression [Yersinia rohdei
ATCC 43380]
gi|238711979|gb|EEQ04192.1| Negative regulator of beta-lactamase expression [Yersinia rohdei
ATCC 43380]
Length = 257
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 19 WEKNRNHYDSRDG--MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKY 75
++ + N Y S +G + V L++H T NF + + T + S Y++ + + Y
Sbjct: 2 YQVDYNSYRSIEGFNLRVNSLVIHCTAENFVDSMASLTGDSV----SVQYLVPDITDESY 57
Query: 76 LPGG----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
+ G ++ +V +N RAWHAG W +N SIGI +VN + E ++ P
Sbjct: 58 IQAGFKSMQIFNLVDENARAWHAGESGWAGRTGINDTSIGIEIVN--LATENSGIFHFPP 115
Query: 132 FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
+ QI + L +I+ ++ I P V+ H+DIAP DPGP FPW LY D G+GAW
Sbjct: 116 YPAEQITAVKQLATNILQRYPDITPVNVVAHSDIAPTRNSDPGPEFPWQDLY-DEGVGAW 174
Query: 191 LSPD--EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFK 244
D E + V K P R L YGY++T N S ++RA +
Sbjct: 175 FDDDIKEKYTQQFVAKGVPTRDE--------LLARFSTYGYDITFANSESGYKQLVRALQ 226
Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKY 275
HF P+ I E +ALV KY
Sbjct: 227 LHF----RPDNYNGYIDIETAAILYALVEKY 253
>gi|418293615|ref|ZP_12905523.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379065006|gb|EHY77749.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 262
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 112/227 (49%), Gaps = 26/227 (11%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+DSR ++++LHYT + + + SSHY+I E + ++V
Sbjct: 31 HDSR----AQFIVLHYTSTDLPRSLELLSGRDV----SSHYLIGESPAT------IYRLV 76
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W LN+ SIGI LVN G V +YP+ E QI L L K
Sbjct: 77 DENRRAWHAGESEWNGRTWLNATSIGIELVNRGYVESADGRRLWYPYSEEQIDALVELLK 136
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI+++ +K ++GH+DIAP K+DPGPLFPW +L D G+ W D +T + + R
Sbjct: 137 DIMARHGLKAGAIIGHSDIAPQRKVDPGPLFPWKRL-ADEGLVPWPDADAVTAQRM-RYA 194
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNV-----TITNKRSVIRAFKTHF 247
P F + L A GY V R+VI AF+ +
Sbjct: 195 SAGLPTI-----AWFQDALAAQGYRVPRHGHLDDETRNVIAAFQMKY 236
>gi|421144316|ref|ZP_15604231.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. fusiforme ATCC 51190]
gi|395489266|gb|EJG10106.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. fusiforme ATCC 51190]
Length = 299
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++ILHYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 64 IQFIILHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 114
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 115 AGTSAFRGRTNINDTSVGIEIVSDGIAREYRGDPNTYHPYDHYVDYKPIQIEKAAQIIKY 174
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + +L H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 175 VAEKYNIPARNILAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 228
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 229 DEEKFNATSIREIKDELRK-YGYEINRFDEWDKESKDVVYAFQLHF----NPKNPTGEMD 283
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 284 LETFAILKALNKKY 297
>gi|237743511|ref|ZP_04573992.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp. 7_1]
gi|229433290|gb|EEO43502.1| anhydro-n-acetylmuramyl-tripeptide amidase [Fusobacterium sp. 7_1]
Length = 289
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 33/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K++ILHYT + I T S+H+++ +++ K+ +VP RAWH
Sbjct: 55 IKFIILHYTALDNVGSIRELTGGV-----SAHFLVLDEDD-----NKIYSLVPLEQRAWH 104
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG+ +R N+N S+GI +VN G+ E N Y+P+D QI + + K
Sbjct: 105 AGVSAFRGRTNINDTSVGIEIVNDGIAKEYRSDPNPYHPYDHYVDYKPIQIEKVAQIIKY 164
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW E +KF
Sbjct: 165 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------ETDKQKFM 218
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 219 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 273
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 274 LETFAILKALNKKY 287
>gi|452749933|ref|ZP_21949690.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri NF13]
gi|452006242|gb|EMD98517.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri NF13]
Length = 262
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 36/232 (15%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+DSR ++++LHYT + + + SSHY+I E + ++V
Sbjct: 31 HDSR----AQFIVLHYTSTDLPRSLQLLSGRDV----SSHYLIGESPAT------IYRLV 76
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W LN+ SIGI LVN G V +YP+ E QI L LL K
Sbjct: 77 DENRRAWHAGESEWNGRTWLNATSIGIELVNRGYVESADGRRLWYPYSEEQIDALVLLLK 136
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI+++ +KP ++GH+DIA K+DPGPLFPW +L + G+ W D + E +
Sbjct: 137 DIMARHDLKPGAIIGHSDIAAQRKVDPGPLFPWKRL-AEEGLLPWPDTDAVAAERM---- 191
Query: 206 KPARPYPRKLDRGI-----FLELLKAYGYNV-----TITNKRSVIRAFKTHF 247
R G+ F + L A GY V R+VI AF+ +
Sbjct: 192 -------RYASGGLPTITWFQDALAAQGYRVPRHGHLDDETRNVIAAFQMKY 236
>gi|312962221|ref|ZP_07776713.1| hypothetical protein PFWH6_4139 [Pseudomonas fluorescens WH6]
gi|311283558|gb|EFQ62147.1| hypothetical protein PFWH6_4139 [Pseudomonas fluorescens WH6]
Length = 255
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 122/239 (51%), Gaps = 34/239 (14%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----K 80
++ R+G V+ LI+HYT FA + T + S+HY++ + E Y G +
Sbjct: 13 FNERNGEPVRQLIVHYTAAPFASSLRTLTRDGV----SAHYLLPDPHEPGYRVAGYDELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYYPFDEN 135
++V ++ RAWHAG+ +W NLNS SIGI LVN GGV + + E
Sbjct: 69 AFRLVDEDKRAWHAGVSQWGGRDNLNSRSIGIELVNLARDDGGVF-------TFPAYPEE 121
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L +DI+ ++ +I P +LGH+D+A G K DPGP PW L+ + GIGAW D
Sbjct: 122 QIDVLIALLRDILGRYPQIGPTDILGHSDVAYGRKSDPGPRLPWRCLF-EAGIGAWF--D 178
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV---IRAFKTHFSAN 250
+ T R+F P +++R + YGY N++ RAF+ HF A
Sbjct: 179 DSTRAMYQRRFCLGLPPEVEVERA-----FQRYGY-APAKNRQGFERRTRAFQMHFRAR 231
>gi|319404647|emb|CBI78249.1| N-acetylmuramoyl-L-alanine amidase amiD [Bartonella rochalimae ATCC
BAA-1498]
Length = 255
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 29/255 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
V++L++HYT +F + T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTAIDFKQSVAILTGTKV----SAHYLVPDPLEKTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP-FDENQIHTLGLLGKDI 147
AWHAG+ W NLN SIGI +V+ VV + +P ++ QI + L +I
Sbjct: 75 ECAWHAGVSSWAGRSNLNDTSIGIEIVS--VVTDDMNGMPIFPPYNPMQIDAVKELALNI 132
Query: 148 VSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I P V+GH+DIAP K DPG FPW +LY G+GAW D+ +F
Sbjct: 133 LQRYPDITPINVVGHSDIAPVRKSDPGAAFPWKELYT-VGVGAWY--DDELKNCYQAQF- 188
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITT 262
+ P K D + K YGY+ +I +++IRAF+ HF N + I +
Sbjct: 189 -CKSLPAKAD---IIAKFKQYGYDTSIAKTEDGYKALIRAFQLHFR-QSNYDGI---LDA 240
Query: 263 EDMFWAWALVAKYGS 277
E +ALV KY S
Sbjct: 241 ETAAVLYALVDKYFS 255
>gi|126735092|ref|ZP_01750838.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseobacter sp. CCS2]
gi|126715647|gb|EBA12512.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseobacter sp. CCS2]
Length = 249
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 28/219 (12%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
RDG++ ++LHYT A N + S+HY+I+E G+VI +VP+
Sbjct: 27 RDGVTPDIVVLHYTAMASASAAADTLCNPDTQV-SAHYLIAED-------GEVISLVPEA 78
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
+RAWHAG G W ++NS SIGI L N T PF QI L L K I
Sbjct: 79 LRAWHAGAGAWGGVTDVNSRSIGIELAN----------TGSTPFAAAQIDALTDLLKGIK 128
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++ I+P+ V+GH+D+APG K+DPG F W +L + G+ W S + +
Sbjct: 129 TRWDIRPERVIGHSDMAPGRKIDPGVRFDWRRLAFE-GLSVWPSSNAC--------LHSS 179
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
++ D F L+ A+GY+ T T+ ++++F+ F
Sbjct: 180 EKGTQEADDVRFAALMAAFGYSTT-TDPELLLKSFRLRF 217
>gi|83955341|ref|ZP_00963996.1| N-acetylmuramoyl-L-alanine amidase, putative [Sulfitobacter sp.
NAS-14.1]
gi|83840334|gb|EAP79508.1| N-acetylmuramoyl-L-alanine amidase, putative [Sulfitobacter sp.
NAS-14.1]
Length = 222
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 18/158 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH R+G+ ++LHYT + A A + A + S+HY+I+ K G+ +
Sbjct: 12 NHGPRRNGLRPSLIVLHYTAMDSAEAACARLCDPAAEV-SAHYLITGK-------GETVP 63
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP++ RAWHAG G W+ ++NS SIGI L N G +PF E Q+ TL L
Sbjct: 64 LVPEDQRAWHAGAGGWQGRDDINSRSIGIELDNRG----------NHPFSEPQMATLETL 113
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ I+ ++ I P+ V+GH+D+APG K+DPGP F W +L
Sbjct: 114 LRGIMQRWSIPPEGVIGHSDMAPGRKIDPGPRFDWPRL 151
>gi|300870792|ref|YP_003785663.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli 95/1000]
gi|300688491|gb|ADK31162.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli 95/1000]
Length = 341
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 44/247 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ + Y+ILHYT + + T SSHY+I+ + + + ++V D R
Sbjct: 42 NLRINYIILHYTALDDDMSLKVLTDPGV----SSHYLITTRANE-----PIYKLVDDTNR 92
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST---------------------NY 129
AWHAGI ++ ++N S+GI +VN G + +K +T Y
Sbjct: 93 AWHAGITMYQNRYSINDSSVGIEIVNLGYI-QKVTNTPQQLARMNKRQLENLYFTPYDEY 151
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
+DE+QI + L +++V ++ ++P +LGH+DIAP K DPGP FPW +LY +Y +G
Sbjct: 152 LEYDESQIEKVAYLLRELVDKYGVRPYNILGHSDIAPYRKKDPGPKFPWKRLYDEYDLGI 211
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAF 243
W ++ + F + Y R I E +K YGY TN R V+ AF
Sbjct: 212 WYDEEDYS------NFMMSNDYRRATVMDIKNEFIK-YGYTSMPTNNVWDYESRKVLYAF 264
Query: 244 KTHFSAN 250
+ F N
Sbjct: 265 QCRFRTN 271
>gi|229591795|ref|YP_002873914.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens SBW25]
gi|229363661|emb|CAY51012.1| probable N-acetylmuramoyl-L-alanine amidase [Pseudomonas
fluorescens SBW25]
Length = 255
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 127/265 (47%), Gaps = 40/265 (15%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R+G V+ +ILHYT F + T + S+HY++ + E Y G +
Sbjct: 13 FNERNGEPVRQVILHYTAAPFGSSLRTLTQDGV----SAHYLLPDPDEPSYRAAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYYPFDEN 135
V ++V + RAWHAG+ W NLNS SIGI +VN GGV + + E
Sbjct: 69 VFRLVEEGKRAWHAGVSHWAGRDNLNSRSIGIEIVNLARDDGGVF-------TFPAYGEE 121
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L D++ ++ +I P +LGH+D+A G K DPGP PW L+ + G+GAW D
Sbjct: 122 QIEVLIALVCDVLGRYPQIGPTDILGHSDVAYGRKSDPGPRLPWRCLH-EAGVGAWF--D 178
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGY----NVTITNKRSVIRAFKTHFSAN 250
E T R+F P +++R + YGY N +R+ RAF+ HF
Sbjct: 179 EATRAMYQRRFCLGLPPEVEVERA-----FQRYGYAPAKNRQAFEQRT--RAFQMHF--- 228
Query: 251 QNPERIYADITTEDMFWAWALVAKY 275
P + E +AL KY
Sbjct: 229 -RPRDYCGFLDAETCAILYALNEKY 252
>gi|407773518|ref|ZP_11120819.1| N-acetylmuramyl-L-alanine amidase [Thalassospira profundimaris
WP0211]
gi|407283982|gb|EKF09510.1| N-acetylmuramyl-L-alanine amidase [Thalassospira profundimaris
WP0211]
Length = 250
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 24/229 (10%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N D DG + L+LHYT + ++ SSHY+I E G++ Q
Sbjct: 21 NFGDRPDGCPIDILVLHYTGMQSGADALERLCDPESSV-SSHYLIEED-------GRIFQ 72
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG+G W+ +++NS SIGI +VN G Y PF E QI ++ L
Sbjct: 73 LVDEDKRAWHAGLGIWQGCQDVNSHSIGIEIVNPG------HEYGYRPFPEIQIQSVIDL 126
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI+ + +I ++ H+D+AP K DPG LFPW +L + GIG W P V I
Sbjct: 127 TQDILKRQEIPASRIIAHSDMAPDRKEDPGELFPWQQL-AENGIGLW--PGCHGVAEISS 183
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIR--AFKTHFSAN 250
A P + F LL+A GY +++ R AF+ H+ N
Sbjct: 184 GISGAAVSPDE-----FYRLLEAIGYGPADSDEGKAKRTIAFQRHWRQN 227
>gi|328542952|ref|YP_004303061.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Polymorphum gilvum SL003B-26A1]
gi|326412698|gb|ADZ69761.1| N-acetylmuramoyl-L-alanine amidase domain protein [Polymorphum
gilvum SL003B-26A1]
Length = 253
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH + R+G + ++LHYT + + + RA S+HY + E G ++
Sbjct: 18 NHNERREGKPIDMIVLHYTGMADEDAALRRLCDPRAEV--SAHYFVRET-------GDIL 68
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ RAWHAG W+ + ++NS SIGI + N G Y F Q+ +
Sbjct: 69 QCVPEARRAWHAGRSFWKGETDINSRSIGIEIANPG------HEWGYRDFPAVQVEAVIA 122
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L +DI ++ I P VL H+D+AP K DPG FPW +L GIG ++P +
Sbjct: 123 LCRDICARHAIPPWRVLAHSDVAPQRKEDPGEKFPWERL-ARAGIGHHVAPAPLAGGRFF 181
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERI- 256
++ + +P +L YGY+V I+ R+ + AF+ HF PER+
Sbjct: 182 QEGEAGQPVE------ALQSMLALYGYDVPISGVFDARTRAAVAAFQRHF----RPERVD 231
Query: 257 -YADITT 262
AD++T
Sbjct: 232 GIADVST 238
>gi|83309958|ref|YP_420222.1| negative regulator of beta-lactamase expression [Magnetospirillum
magneticum AMB-1]
gi|82944799|dbj|BAE49663.1| Negative regulator of beta-lactamase expression [Magnetospirillum
magneticum AMB-1]
Length = 226
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 103/217 (47%), Gaps = 32/217 (14%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
G V L+LHYT A + A S+HYVI E G+V +VP++MR
Sbjct: 17 GAIVDTLVLHYTGMESGEAALARLCD-AQAKVSAHYVIEED-------GRVFALVPEDMR 68
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR + ++NS SIGI LVN G Y F QI +L L + I+ +
Sbjct: 69 AWHAGASSWRGEPDVNSRSIGIELVNPG------HEFGYRAFPGAQIESLIRLCRGILER 122
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
I + V+GH+D+AP K DPG LFPW L +GIG W P
Sbjct: 123 HPIPARNVVGHSDVAPTRKEDPGELFPWADLAERHGIGLWPC---------------GEP 167
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
P + + L L GY+ I + ++ + AF+ HF
Sbjct: 168 TPLPPEH-VLLSGLAHVGYD--IHDPKATLTAFQRHF 201
>gi|431808389|ref|YP_007235287.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli
P43/6/78]
gi|434383366|ref|YP_006705149.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli WesB]
gi|404432015|emb|CCG58061.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli WesB]
gi|430781748|gb|AGA67032.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli
P43/6/78]
Length = 347
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 44/247 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ + Y+ILHYT + + T SSHY+I+ + + + ++V D R
Sbjct: 48 NLRINYIILHYTALDDDMSLKVLTDPGV----SSHYLITTRANE-----PIYKLVDDTNR 98
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST---------------------NY 129
AWHAGI ++ ++N S+GI +VN G + +K +T Y
Sbjct: 99 AWHAGITMYQNRYSINDSSVGIEIVNLGYI-QKVTNTPQQLARMNKRQLENLYFTPYDEY 157
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
+DE+QI + L +++V ++ ++P +LGH+DIAP K DPGP FPW +LY +Y +G
Sbjct: 158 LEYDESQIEKVAYLLRELVDKYGVRPYNILGHSDIAPYRKKDPGPKFPWKRLYDEYDLGI 217
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAF 243
W ++ + F + Y R I E +K YGY TN R V+ AF
Sbjct: 218 WYDEEDYS------NFMMSNDYRRATVMDIKNEFIK-YGYTSMPTNNVWDYESRKVLYAF 270
Query: 244 KTHFSAN 250
+ F N
Sbjct: 271 QCRFRTN 277
>gi|421473662|ref|ZP_15921757.1| N-acetylmuramoyl-L-alanine amidase, partial [Burkholderia
multivorans ATCC BAA-247]
gi|400220511|gb|EJO51042.1| N-acetylmuramoyl-L-alanine amidase, partial [Burkholderia
multivorans ATCC BAA-247]
Length = 211
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVP 86
DSR +++L++HYT + A + T + S HYV+ V Q+VP
Sbjct: 61 DSR----IRFLVMHYTESDEAKSLRTLTGDTV----SVHYVVPAHPRSERGQPVVYQLVP 112
Query: 87 DNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKD 146
+ RAWHAG+ W++ LN+ SIGI VN G + + R+ + P+ Q+ L L KD
Sbjct: 113 EAQRAWHAGVSAWQQTTELNAASIGIENVNRGPLDPQQRT--WQPYPPEQVDALIRLSKD 170
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIG 188
IV+++ I P V+GH+DIAP K+DPGPLFPW L G+G
Sbjct: 171 IVARYGIAPTRVVGHSDIAPQRKIDPGPLFPWRAL-AQAGVG 211
>gi|407802529|ref|ZP_11149370.1| negative regulator of AmpC, AmpD [Alcanivorax sp. W11-5]
gi|407023684|gb|EKE35430.1| negative regulator of AmpC, AmpD [Alcanivorax sp. W11-5]
Length = 296
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 29/256 (11%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS-EKEGKYLPGGKVIQI 84
Y SR + +L+LHYT + + T SSHY++ G+ P + Q+
Sbjct: 29 YSSR----IYHLVLHYTSSEEPRALRSLTGPEV----SSHYLVPVPPRGETRP--VIYQM 78
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP++ RAWHAG+ W N+N SIGI ++N G + + P+ QI + L
Sbjct: 79 VPEHERAWHAGVSAWGSRSNINDTSIGIEIINTGPRAAEG-GVAWAPYPPEQIDAVIALV 137
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+D+V ++ I P ++GH+D+AP K+DPGP FPW LY D G+G W P+E V+
Sbjct: 138 RDLVRRYDIDPINIVGHSDVAPLRKVDPGPAFPWKALY-DAGLGVW--PEERVVQRYRDW 194
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYAD 259
F P + E L +GY + +T + S ++AF+ F P
Sbjct: 195 FTLLPPTLSDVQ-----EALATFGYPIRLTGEPDRQTCSTVQAFQMRF----RPADYRGV 245
Query: 260 ITTEDMFWAWALVAKY 275
E + WAL+ +Y
Sbjct: 246 PDAETVAILWALLERY 261
>gi|410664081|ref|YP_006916452.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
gi|389620911|gb|AFK93843.1| N-acetylmuramoyl-L-alanine amidase AmiD2 [Simiduia agarivorans SA1
= DSM 21679]
gi|409026438|gb|AFU98722.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
Length = 318
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 111/243 (45%), Gaps = 31/243 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
V++L+LHYT NF + A T + SSHY++ E P +V ++V +N RA
Sbjct: 35 VRFLVLHYTAINFDRSLRALTLPSGSPV-SSHYLVPESNDPSYPHADLRVYKLVDENKRA 93
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFR----STNYYP-FDENQIHTLGLLGKD 146
WHAG W LN SIGI +VN S ++P FD Q+ + L KD
Sbjct: 94 WHAGPSAWEDREALNDQSIGIEIVNLAHCHPPMETGTDSLCFFPDFDPVQMQLVAGLAKD 153
Query: 147 IVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM-----TVEA 200
I+ ++ I P V+GH DI P K DPGP FPW L GIGAW D++ +EA
Sbjct: 154 ILVRYPDITPTRVVGHGDIQPFRKNDPGPRFPWQWLAAQ-GIGAWPDDDKVLAHYRALEA 212
Query: 201 I--------VRKFKPARPYP---RKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
V K P P P D F L AYGY + + RAF+
Sbjct: 213 APAPVLNEWVNKPDPENPTPLPEPTPDERQFAHWLAAYGYGIKPCEANLYEIQRYTRAFQ 272
Query: 245 THF 247
HF
Sbjct: 273 YHF 275
>gi|323135569|ref|ZP_08070652.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocystis sp. ATCC 49242]
gi|322398660|gb|EFY01179.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocystis sp. ATCC 49242]
Length = 454
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 111/240 (46%), Gaps = 33/240 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ LILHYT + + S+HY + E G+V+Q+VP+ RAWH
Sbjct: 235 ISALILHYTGMPTGESALELLCSPIAEV-SAHYFVEEN-------GRVLQLVPEERRAWH 286
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + ++NS SIGI +V+ G + + PF E QI + L +DI ++ I
Sbjct: 287 AGASFWAGETDMNSASIGIEIVHAGHIDPR-------PFPEPQIAAVAALSRDICARRNI 339
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
PQ VL H+DIAP K+DPG FPW L G+G WL+P A P
Sbjct: 340 PPQRVLAHSDIAPRRKIDPGEFFPWETLA-RCGVGRWLAP------APPDDGPALEPGAG 392
Query: 214 KLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERI--YADITTEDMF 266
D L +GY + T + + + AF+ HF P R+ AD +T D+
Sbjct: 393 GPDVAQLQRRLADFGYKMVETGVYDEDTAATVAAFQRHF----RPARVDGRADASTLDIL 448
>gi|226942360|ref|YP_002797433.1| N-acetylmuramoyl-L-alanine amidase protein [Azotobacter vinelandii
DJ]
gi|226717287|gb|ACO76458.1| N-acetylmuramoyl-L-alanine amidase protein [Azotobacter vinelandii
DJ]
Length = 258
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 114/230 (49%), Gaps = 25/230 (10%)
Query: 24 NHYDSRDGMS-VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
Y SR S V+Y++LHYT + + T SSHY+I K +
Sbjct: 24 TRYSSRGQDSRVQYIVLHYTSEDLPGSLRQLTRGEV----SSHYLIDAKPAT------IY 73
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
++V +N RAWHAG +WR LN+ SIGI LVN G + + +YP+ QI L +
Sbjct: 74 RLVEENRRAWHAGNSQWRGRTWLNASSIGIELVNPGYL-DTPNGRLWYPYPAKQIDALIV 132
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L KDIV + + + ++GH+DIAP K+DPGPLFPW +L + G+ W PD V +
Sbjct: 133 LLKDIVKRHGLGLEAIVGHSDIAPLRKVDPGPLFPWKRL-AEAGLIVW--PDARRVAELQ 189
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
++ P D F E L +GY V R VI AF+ +
Sbjct: 190 TRYAVRLP-----DVAWFQEQLARHGYALERHGVLDAATRRVIAAFQMKY 234
>gi|409438731|ref|ZP_11265794.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium mesoamericanum STM3625]
gi|408749391|emb|CCM76970.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhizobium mesoamericanum STM3625]
Length = 254
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 120/250 (48%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + G ++LHYT + + + SSHY + E G+V+Q
Sbjct: 18 NHGERAGGRKPDMILLHYTGMPTPEGALEWLCHNESQV-SSHYFVGED-------GEVLQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W+ + ++NS+SIGI + N G G YP + QI ++ L
Sbjct: 70 LVPEERRAWHAGKSYWQGEVDINSLSIGIEIANAGHPG----GLPEYP--QEQIRSVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D ++ I P+ VLGH+D+AP K+DPG FPW +L+ G+G W+ P ++ +
Sbjct: 124 CRDCGQRWSIAPERVLGHSDVAPIRKVDPGEKFPWEELH-RAGVGHWVEPAPISGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS-----VIRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF P RI
Sbjct: 183 RGDRGQPVE------ALQSMLSLYGYATEITGEFSDKMAGEVEAFQRHF----RPARIDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|220924768|ref|YP_002500070.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium nodulans ORS 2060]
gi|219949375|gb|ACL59767.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium nodulans ORS 2060]
Length = 249
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 124/250 (49%), Gaps = 42/250 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + R V L+LHYT A +N + S HY + E G+V+Q
Sbjct: 18 NHGERR--RPVDMLLLHYTGMPDAGEALLRLANPLAEV-SCHYFVFED-------GRVVQ 67
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W +R+ NS SIGI + + G G P+ E Q+ + L
Sbjct: 68 MVPEGRRAWHAGDSAWEGERDTNSRSIGIEIAHPGHAG------GLPPYPEAQVAAVIAL 121
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI++++ I+ VL H+D+AP K DPG FPW +L+ G+G W+ P A +R
Sbjct: 122 ARDILARWPIRADRVLAHSDVAPSRKQDPGEGFPWERLHR-AGVGHWVPP------APIR 174
Query: 204 KFKPARPYPRKLDRGIFLELLKA----YGYNVTITNK-----RSVIRAFKTHFSANQNPE 254
+ + + D G +E L+A YGY+ +T R+V+ AF+ HF P
Sbjct: 175 DGR----FFAEGDAGQPIEALQAMFALYGYDQPVTGTFDVRMRAVVEAFQRHF----RPA 226
Query: 255 RI--YADITT 262
R+ AD +T
Sbjct: 227 RVDGVADAST 236
>gi|227822663|ref|YP_002826635.1| N-acetylmuramoyl-L-alanine amidase family protein [Sinorhizobium
fredii NGR234]
gi|227341664|gb|ACP25882.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Sinorhizobium fredii
NGR234]
Length = 254
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 123/271 (45%), Gaps = 34/271 (12%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M S PG P P NH + G ++LHYT + A + R +
Sbjct: 1 MTSRACDFPGARFVPSP------NHGERAGGRRPDMVLLHYTGMDTAGSALDWLC-REES 53
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
SSHY + E G++ Q+VP+ RAWHAG W+ + ++NS SIGI + N G
Sbjct: 54 QVSSHYFVHED-------GRIDQLVPEERRAWHAGKSFWKGEADINSCSIGIEIANAGHP 106
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
G F E QI + L + +++I P+ VL H+D+AP K+DPG FPW
Sbjct: 107 G------GLPDFPEAQIAAVVELCRHCGERWQITPERVLAHSDVAPIRKVDPGENFPWDV 160
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK---- 236
L+ +G+G W+ P + ++ +P +L YGYN+ +T
Sbjct: 161 LFR-HGVGHWVEPAPVGGGRFFQRGDRGQPVE------ALQSMLSLYGYNIEVTGDFCEA 213
Query: 237 -RSVIRAFKTHFSANQNPERIYADITTEDMF 266
V+ AF+ HF Q+ AD++T D
Sbjct: 214 TEGVVAAFQRHF--RQSRVDGIADVSTIDTL 242
>gi|359781049|ref|ZP_09284274.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas psychrotolerans
L19]
gi|359371109|gb|EHK71675.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas psychrotolerans
L19]
Length = 261
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 24 NHYDSRDGMS-VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
+ Y +RD S V+Y++LHYT + + T S+HY+I G +
Sbjct: 28 DDYTARDQDSRVQYIVLHYTAADSKQSLKLLTQAGV----SAHYLIDTD-------GTIY 76
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST----NYYPFDENQIH 138
++V +N RAWHAG+ +W LNS SIGI +VN G FR T +YPF E QI
Sbjct: 77 RLVDENRRAWHAGVSEWEGRTWLNSTSIGIEMVNLG-----FRDTPAGRQWYPFSEAQIK 131
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L KDI + + + ++GH+DIAPG K DPGPLFPW +L G+ W P+ V
Sbjct: 132 ALIPLLKDIEQRHGLDRRAIVGHSDIAPGRKQDPGPLFPWARLAA-AGLINW--PNPAVV 188
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
P P F + L GY V T R VI AF+ +
Sbjct: 189 AQRQASLGGVLPPP-----AWFQDQLARIGYAVPRTGVLDAATRDVIGAFQMKY 237
>gi|431925396|ref|YP_007238430.1| negative regulator of beta-lactamase expression [Pseudomonas
stutzeri RCH2]
gi|431823683|gb|AGA84800.1| negative regulator of beta-lactamase expression [Pseudomonas
stutzeri RCH2]
Length = 262
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 36/232 (15%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+DSR ++++LHYT + + + SSHY+I E + ++V
Sbjct: 31 HDSRS----QFIVLHYTSADLPRSLELLSGRDV----SSHYLIGESPAT------IYRLV 76
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
+N RAWHAG +W LN+ SIGI LVN G V ++P+ + QI L +L K
Sbjct: 77 DENRRAWHAGESEWNDRTWLNATSIGIELVNRGYVESADGRRLWHPYSDAQIDALVVLLK 136
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI+++ ++KP ++GH+DIAP K+DPGPLFPW +L D G+ W + VE +
Sbjct: 137 DIMARHELKPGAIIGHSDIAPQRKVDPGPLFPWKRLA-DEGLVPWPEAGAVAVEQM---- 191
Query: 206 KPARPYPRKLDRGI-----FLELLKAYGYNV-----TITNKRSVIRAFKTHF 247
R G+ + + L A GY V R+VI AF+ +
Sbjct: 192 -------RYASEGLPPVVWYQDALVAQGYRVPRHGHLDAETRNVIAAFQMKY 236
>gi|163868933|ref|YP_001610160.1| hypothetical protein Btr_1904 [Bartonella tribocorum CIP 105476]
gi|161018607|emb|CAK02165.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 268
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 130/264 (49%), Gaps = 38/264 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT +F + A T + S+HY++ + E Y G ++ +V +N
Sbjct: 19 VRFLVMHYTSLDFKASVMALTGEKV----SAHYLVPDPSERTYCEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYY-------PFDENQ 136
AWHAG+ W + N SIGI +VN G E F +Y P++ Q
Sbjct: 75 ECAWHAGVSSWAGHSHFNDASIGIEIVNLATGHSGAPEETFDLVDYRSEEVGFPPYNPIQ 134
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIA G K DPG FPW +LY GIGAW D+
Sbjct: 135 IDAVKELALNILQRYPDIMPTDVVGHSDIAIGRKSDPGAAFPWKELYRA-GIGAWY--DD 191
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
+F + P R L LK YGY+++ ++++RAF+ HF +
Sbjct: 192 ELKSHYQEQFSKSFP-----SREEVLTKLKCYGYDISAAGTEIGYKNLVRAFQLHFR-QE 245
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + I D+ T + +ALV KY
Sbjct: 246 NYDGIL-DVETAAIL--YALVDKY 266
>gi|254487314|ref|ZP_05100519.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Roseobacter sp. GAI101]
gi|214044183|gb|EEB84821.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Roseobacter sp. GAI101]
Length = 224
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 29 RDGMSVKYLILHYTVY-NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
RDG+ ++++HYT N A + +A S+HY+IS K G+V Q+V +
Sbjct: 17 RDGLRPSFIVVHYTAMDNAAAALDRLCDTQAEV--SAHYLISAK-------GEVTQMVAE 67
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
+MRAWHAG G+W +++NS SIGI L N G +PF E Q+ L L ++I
Sbjct: 68 DMRAWHAGQGEWAGLKDINSRSIGIELDNRGT----------HPFSEPQMSALETLLREI 117
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ ++ I P V+GH+D+APG K DPGP F W +L
Sbjct: 118 MDRWDISPAGVIGHSDMAPGRKTDPGPKFDWARL 151
>gi|254302552|ref|ZP_04969910.1| glutaminase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
gi|148322744|gb|EDK87994.1| glutaminase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
Length = 297
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + A I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 62 IQFIVVHYTATDNAGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 112
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 113 AGASAFRGRTNINDTSVGIEIVSDGIAREYRPDPNPYHPYDHYVDYKPIQIEKTAQIIKY 172
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + + ++ H+DIAP K DPG FPW +LY Y IGAW E ++F
Sbjct: 173 VAEKYNVPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------ETDKQEFM 226
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 227 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 281
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 282 LETFAILKALNKKY 295
>gi|407769299|ref|ZP_11116675.1| N-acetylmuramoyl-L-alanine amidase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287626|gb|EKF13106.1| N-acetylmuramoyl-L-alanine amidase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 239
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 34/253 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N+ D D + + L+LHYT + A ++ SSHY++ E G + +
Sbjct: 19 NYGDRPDCVPIDILVLHYTGMQSGKAALDRLCDPAASV-SSHYLVEED-------GTIFR 70
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG G+W+ ++NS SIGI +VN G Y PF + QI + L
Sbjct: 71 LVDEDKRAWHAGRGQWQECDDVNSSSIGIEIVNPG------HEFGYRPFPDIQIDAVIAL 124
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI+++ I+P ++ H+D+AP K DPG LFPW +L + GIG W + D +A
Sbjct: 125 CRDILTRHDIRPDRIIAHSDMAPDRKEDPGELFPWDRLAAN-GIGLWPTADITKNDAACT 183
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
+ + F +L GY +R + AF+ H+ P I ++ E
Sbjct: 184 ETE-------------FDAMLDRLGYGPNDALERRI--AFQRHW----RPSNISGNVDGE 224
Query: 264 DMFWAWALVAKYG 276
AL+ K G
Sbjct: 225 CAAILRALLDKAG 237
>gi|333898407|ref|YP_004472280.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas fulva 12-X]
gi|333113672|gb|AEF20186.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudomonas fulva 12-X]
Length = 260
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 24/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y++LHYT + H + T S+HY+I+ +P + Q+V +N RAWH
Sbjct: 35 VQYIVLHYTSTDLPHSLELLTKEEV----SAHYLINA-----VPP-TIYQLVDENRRAWH 84
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ +W+ LN +IGI +VN G + + + P+ + QI L +L KDI+ + +
Sbjct: 85 AGVSEWQGRTWLNGTTIGIEMVNQGYF-DTPKGRYWQPYAQPQIDALIVLLKDIMQRHHL 143
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P ++GH+DIAP K+DPGP+FPW +L D G+ W P+ V F + P
Sbjct: 144 PPGSIIGHSDIAPQRKVDPGPMFPWKQL-ADAGLMPW--PNAEVVARQQAVFSTSLP--- 197
Query: 214 KLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
F + L GY V T R+VIRAF+ +
Sbjct: 198 --SVAWFQQQLAEQGYTVPSTGVLDEETRNVIRAFQMKY 234
>gi|451942397|ref|YP_007463034.1| N-acetylmuramoyl-L-alanine amidase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451901784|gb|AGF76246.1| N-acetylmuramoyl-L-alanine amidase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 317
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 139/306 (45%), Gaps = 80/306 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
+++L++HYT NF + A T + S+HY++ + E YL G ++ +V ++
Sbjct: 19 IRFLVMHYTSLNFKESVMALTGEKV----SAHYLVPDPSEQTYLEAGFKDMRIFNLVDES 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN----GGVVGEK---------FRSTNYYPFDEN 135
RAWHAG+ W NLN SIGI +VN V +K R N P DEN
Sbjct: 75 ERAWHAGVSSWAGHSNLNDTSIGIEIVNLATGHSVSSDKTYVETSLKDVRVLNPVPKDEN 134
Query: 136 -----------------------------------------QIHTLGLLGKDIVSQF-KI 153
QI + L +I+ ++ I
Sbjct: 135 ELQAGSWTEKRHVSSPVLPLEKDHFFTCQNDGVIFPPYNPTQIDAVKELALNILQRYPDI 194
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIA G K+DPG FPW +LY+ GIGAW D+ +F + +P
Sbjct: 195 TPTDVVGHSDIAIGRKIDPGAAFPWKELYM-AGIGAWY--DDERKHHYQEQF--CKSFPS 249
Query: 214 KLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
K D L LK YGY+++I +++IRAF+ HF +N + I D+ T + +
Sbjct: 250 KED---VLAQLKCYGYDISIACSEIGYKNLIRAFQLHFR-QENYDGIL-DVETAAIL--Y 302
Query: 270 ALVAKY 275
ALV KY
Sbjct: 303 ALVDKY 308
>gi|388469122|ref|ZP_10143332.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
synxantha BG33R]
gi|388012702|gb|EIK73889.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
synxantha BG33R]
Length = 255
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 24/234 (10%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R G SV+ +ILHYT FA + T H + S+HY++ + E Y G +
Sbjct: 13 FNDRQGESVQQVILHYTAAPFASSLRTLTQ---HGV-SAHYLLPDPDESSYRAAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
V ++V ++ RAWHAG+ W +LNS SIG+ +VN + YP E QI L
Sbjct: 69 VFRLVDEDKRAWHAGVSHWAGRDDLNSRSIGVEIVNLARDDAGVFTFPEYP--EAQIDVL 126
Query: 141 GLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L +D+++++ ++ P +LGH+D+A K DPGP PW L+ + GIGAW DE T
Sbjct: 127 IALVRDVLARYPQVGPTDLLGHSDVAYWRKSDPGPRLPWRVLH-EAGIGAWF--DEPTRA 183
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV---IRAFKTHFSAN 250
R+F P +++R + +GY N+R+ RAF+ HF A
Sbjct: 184 MYQRRFCVGLPPEVEVERA-----FQRFGYK-PAQNRRAFEQRTRAFQMHFRAR 231
>gi|304392266|ref|ZP_07374208.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130]
gi|303296495|gb|EFL90853.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130]
Length = 260
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 15 PFPEWEKNRNHYDSRDGMSV-KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEG 73
P +W + ++ R G+ L+LHYT + + + S HY+I E
Sbjct: 10 PNVDWIEEAVNFGERRGVDGPDILLLHYTGMDSGDGALKWLCCEESGV-SCHYLIFED-- 66
Query: 74 KYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFD 133
G+ +Q+VP+ +RA HAG G W ++NS SIGI +VNGG F
Sbjct: 67 -----GRTLQMVPERLRAHHAGAGSWEGREDVNSRSIGIEIVNGG------HPAGLPEFP 115
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
Q+ + L +DI+ + I VLGH+DIAPG K+DPG F W L G+G W+ P
Sbjct: 116 PEQMQAVADLSRDIIKRHGIAAHRVLGHSDIAPGRKVDPGEAFDWSWLS-QQGVGLWVEP 174
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFS 248
E +++ P +L+ YGY + R V+ AF+ HF
Sbjct: 175 VEAASGLFLQEGDAGDPVQ------ALQGMLELYGYGLECGGNFDRKTRDVVEAFQRHF- 227
Query: 249 ANQNPERI--YADITT 262
P+R+ ADI T
Sbjct: 228 ---RPKRVDGVADIAT 240
>gi|114704933|ref|ZP_01437841.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506]
gi|114539718|gb|EAU42838.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506]
Length = 225
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 108/207 (52%), Gaps = 31/207 (14%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY++ E G+++Q+V + RAWHAG G WR R++NS +IG+ +VN G
Sbjct: 19 SAHYLVHED-------GRIVQLVAEVNRAWHAGEGSWRGRRDVNSSAIGVEIVNAG---- 67
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
S P+ E QI + L +DIV + I+P++VL H+DIAP K DPG FPW +L+
Sbjct: 68 --HSGGLPPYPEGQIDIVAELCRDIVRRNAIQPEFVLAHSDIAPDRKEDPGEHFPWDRLH 125
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----R 237
GIG + P A ++ + P F +L AYGY V I+ R
Sbjct: 126 A-AGIGHRVEP------APIKGGRFFGPGDEGEPVSAFQAMLAAYGYGVPISGSFCEATR 178
Query: 238 SVIRAFKTHFSANQNPERI--YADITT 262
AF+ HF P+++ AD++T
Sbjct: 179 LATIAFQRHF----RPKKVDGIADMST 201
>gi|148257428|ref|YP_001242013.1| 1 N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. BTAi1]
gi|146409601|gb|ABQ38107.1| putative 1 N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. BTAi1]
Length = 283
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 33/250 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
N + + G +ILHYT + + IT + A + S+HY++ E G+++
Sbjct: 43 NFGERKGGRQPDMVILHYTGMPDVEGAITKLCT--AGSEVSAHYIVLED-------GRIV 93
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ MRAWHAG+ W D ++NS SIG+ +VN G Y F QI +
Sbjct: 94 QCVPEAMRAWHAGLSSWGGDEDINSCSIGVEIVNRG------HDWGYPDFPPRQIAAVIA 147
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L + I+ + + +LGH+D+AP K DPG FPW L + G+G W+ P +T +
Sbjct: 148 LCRGIMLRRNVPAHRILGHSDVAPSRKKDPGEKFPWHSLA-NSGVGHWVQPAAITKGETL 206
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIY 257
+ RG+ L K YGY V IT K V+ AF+ HF PERI
Sbjct: 207 KLGSIGDDV-----RGLQKALAK-YGYGVPITGKFDGITMDVVTAFQRHF----RPERID 256
Query: 258 ADITTEDMFW 267
I W
Sbjct: 257 G-IADRSTLW 265
>gi|88859618|ref|ZP_01134258.1| probable N-acetylmuramoyl-L-alanine amidase [Pseudoalteromonas
tunicata D2]
gi|88818635|gb|EAR28450.1| probable N-acetylmuramoyl-L-alanine amidase [Pseudoalteromonas
tunicata D2]
Length = 303
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 47/276 (17%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQ 83
Y+SR +++L++HYT ++ + A T SSHY+I E+ P V +
Sbjct: 30 YNSR----IRFLVMHYTTGDWQDSLQALTKGEV----SSHYLIPEQGDASYPKSHLAVYR 81
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK-------------FRSTNY- 129
+V + RAWHAG+ W+ N+N SIGI L+N + F + +
Sbjct: 82 LVDEQHRAWHAGVSHWQGRSNINDQSIGIELINRAACAHQPQVLTEIAPSAAFFDNQTFC 141
Query: 130 -YP-FDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
YP FD QI L L KDI+++ I P V+GH+DI G+K DPGP FPW LY +G
Sbjct: 142 QYPNFDLQQIQLLIELSKDILARNPDIDPTAVVGHSDIQLGNKQDPGPHFPWYTLY-QHG 200
Query: 187 IGAWLSPDEMTV--EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT---NKRS--V 239
IGAW + +A++ + P + L+ YGY + IT +K++
Sbjct: 201 IGAWYEHATASDHWQALLTEGLPTVAQVQC--------NLQKYGYGIEITGEFDKQTFNT 252
Query: 240 IRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY 275
++AF+ HF P + +IT + + +AL+ KY
Sbjct: 253 VKAFQLHFL----PWQATGEITIKTVAVLFALMDKY 284
>gi|86749108|ref|YP_485604.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris HaA2]
gi|86572136|gb|ABD06693.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris HaA2]
Length = 288
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 32/226 (14%)
Query: 37 LILHYTVYNFAHIITAFTS-NRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + A T +A S+HYV+ E G+++Q VP++ RAWHAG
Sbjct: 59 IVLHYT--GMPDVEGALTRLCKAGTEVSAHYVVLED-------GRILQCVPESKRAWHAG 109
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ W + ++NS SIGI ++N G Y + QI + L + I+ + ++P
Sbjct: 110 VAHWAGEDDINSCSIGIEIINRG------HDWGYPDYPLRQIAAVIALCRGIIIRRNVQP 163
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
VLGH+D+AP K DPG FPW L G+G W+ P + A++R P
Sbjct: 164 HRVLGHSDVAPARKKDPGEKFPWRALA-SSGVGHWVEPAPIDAGAVLRHGAEGEPVQ--- 219
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI 256
+ L YGY + I K V+ AF+ HF PE++
Sbjct: 220 ---VLQRALADYGYGIAINGKFDHATFEVVTAFQRHF----RPEKV 258
>gi|404477280|ref|YP_006708711.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli B2904]
gi|404438769|gb|AFR71963.1| N-acetylmuramoyl-L-alanine amidase [Brachyspira pilosicoli B2904]
Length = 347
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 44/247 (17%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ + Y+ILHYT + + T SSHY+I+ + + + ++V D R
Sbjct: 48 NLRINYIILHYTALDDDMSLKVLTDPGV----SSHYLITTRANE-----PIYKLVDDTNR 98
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST---------------------NY 129
AWHAGI ++ ++N S+GI +VN G + +K +T Y
Sbjct: 99 AWHAGITMYQNRYSINDSSVGIEIVNLGYI-QKVTNTPQQLARMNKRQLENLYFTPYDEY 157
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
+DE+QI + L +++V ++ ++P +LGH+DIAP K DPGP FPW +LY +Y +G
Sbjct: 158 LEYDESQIEKVAYLLRELVDKYGVRPYNILGHSDIAPYRKKDPGPKFPWKRLYDEYDLGI 217
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK------RSVIRAF 243
W ++ + F + Y + I E +K YGY TN R V+ AF
Sbjct: 218 WYDEEDYS------NFMMSNDYRKATVMDIKNEFIK-YGYTSMPTNNVWDYESRKVLYAF 270
Query: 244 KTHFSAN 250
+ F N
Sbjct: 271 QCRFRTN 277
>gi|417382072|ref|ZP_12148150.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353616041|gb|EHC67400.1| N-acetylmuramoyl-L-alanine amidase, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
Length = 189
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 17/154 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT NF + T SSHY+I Y ++ Q+VP+ +AWH
Sbjct: 44 IKVLVIHYTAENFDVSLATLTGRNV----SSHYLIPATPPLYGGKPRIWQLVPEQDQAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVN------GGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AG+ WR LN SIGI L N GGV ++ PF+ QI L L KDI
Sbjct: 100 AGVSFWRGATRLNDTSIGIELENRGWRMSGGV-------KSFAPFESAQIQALIPLAKDI 152
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
++++ IKPQ V+ H DIAP K DPGP FPW +L
Sbjct: 153 IARYDIKPQNVVAHADIAPQRKDDPGPRFPWREL 186
>gi|336401680|ref|ZP_08582442.1| hypothetical protein HMPREF0404_01733 [Fusobacterium sp. 21_1A]
gi|336160781|gb|EGN63813.1| hypothetical protein HMPREF0404_01733 [Fusobacterium sp. 21_1A]
Length = 298
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 33/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K++ILHYT + I T S+H+++ +++ K+ +VP RAWH
Sbjct: 64 IKFIILHYTALDNVGSIRELTGGV-----SAHFLVLDEDD-----NKIYSLVPLEQRAWH 113
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG+ +R N+N S+GI +VN G+ E N Y+P++ QI + + K
Sbjct: 114 AGVSAFRGRTNINDTSVGIEIVNDGIAKEYRSDPNPYHPYNHYVDYKPIQIEKVAQIIKY 173
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ I + ++ H+DIAP K DPG FPW +LY Y IGAW EA ++F
Sbjct: 174 VAEKYNIPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------EADKQEFM 227
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 228 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 282
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 283 LETFAILKALNKKY 296
>gi|33597837|ref|NP_885480.1| exported hydrolase [Bordetella parapertussis 12822]
gi|33602739|ref|NP_890299.1| hydrolase [Bordetella bronchiseptica RB50]
gi|33574266|emb|CAE38598.1| putative exported hydrolase [Bordetella parapertussis]
gi|33577181|emb|CAE35738.1| putative exported hydrolase [Bordetella bronchiseptica RB50]
Length = 275
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE S ++ P+ + QI TL +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + A P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-AEGIP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|395786581|ref|ZP_10466308.1| hypothetical protein ME5_01626 [Bartonella tamiae Th239]
gi|423716526|ref|ZP_17690716.1| hypothetical protein MEG_00256 [Bartonella tamiae Th307]
gi|395422879|gb|EJF89075.1| hypothetical protein ME5_01626 [Bartonella tamiae Th239]
gi|395428600|gb|EJF94675.1| hypothetical protein MEG_00256 [Bartonella tamiae Th307]
Length = 255
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 128/260 (49%), Gaps = 38/260 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G +I P P +E + G+ + LILHYT A + A + S+HYV+
Sbjct: 12 GALIRPSPNFEARKG------GLCPQMLILHYTGMKTADEAEKRLES-AQSKVSAHYVVR 64
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E+ G ++Q+V + RAWHAG W ++NS SIGI +VN G + ++
Sbjct: 65 EE-------GTIVQMVREKDRAWHAGESFWNGIHDVNSASIGIEIVNEGPLSDQ------ 111
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F + QI + L + I+ ++ + +YVL H+DIAP K DPG FPW LY + IG
Sbjct: 112 PDFPKKQIEAVIKLCRSIIDRYSLLSRYVLAHSDIAPARKEDPGEKFPWDLLY-RHDIGH 170
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFK 244
+++P ++ + + RP + +L YGY + I+ R V +AF+
Sbjct: 171 FVTPVPISGGRFMTIGESGRPVE------AYQSMLALYGYGIEISGIFDERTRLVTQAFQ 224
Query: 245 THFSANQNPERI--YADITT 262
HF P+RI AD++T
Sbjct: 225 RHF----RPQRIDGVADVST 240
>gi|427400075|ref|ZP_18891313.1| hypothetical protein HMPREF9710_00909 [Massilia timonae CCUG 45783]
gi|425720815|gb|EKU83730.1| hypothetical protein HMPREF9710_00909 [Massilia timonae CCUG 45783]
Length = 333
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++L+LHYTV N I T + SSHY+++++ K+ ++V +N AWH
Sbjct: 35 ARFLVLHYTVANTPSSIKILTEQQV----SSHYLLTDEATP-----KIYRLVDENRAAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W+ LN+ SIGI +VN G + Y PF + Q+ L L KDIV + I
Sbjct: 86 AGNSSWKNFTQLNNSSIGIEIVNAGW-KDTPTGRVYAPFPQAQVDALVPLVKDIVQRHGI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ VLGH+DIAP K DPGP FPW +L + G+ W PD V A+ F P
Sbjct: 145 APENVLGHSDIAPLRKQDPGPQFPWQRLAQE-GLVLW--PDAARVAAVRPAFDALLP--- 198
Query: 214 KLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
D G F L +G+ + + R+ + AF+ +
Sbjct: 199 --DVGWFQRKLATHGFGIVQSGVYDEATRTTLAAFQMKY 235
>gi|430004094|emb|CCF19885.1| N-acetylmuramoyl-L-alanine amidase amiD [Rhizobium sp.]
Length = 255
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT ++ N + SSHY I E G ++Q+VP++ RAWHAG
Sbjct: 31 IVLHYTGMPDHEQALSWLCNPDSQV-SSHYFIHED-------GLIVQLVPESERAWHAGK 82
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W + ++NS SIGI + N G F Q+ L L +D +++I P+
Sbjct: 83 SCWGGESDVNSASIGIEVANAG------HPAGLPEFPTAQVDALIRLCRDCGQRWQIAPE 136
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
+L H+D+AP K+DPG FPWG+L+ + G+G W+ P + + + +P
Sbjct: 137 RILAHSDVAPIRKLDPGENFPWGRLHAE-GVGHWVQPAPIGGGRFFQLGEVGQPIE---- 191
Query: 217 RGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITTEDMF 266
+L YGY++ I K + V+ AF+ HF P R+ ADI+T D
Sbjct: 192 --ALQSMLSLYGYDIEINGKFGERTKGVVEAFQRHF----RPARVDGIADISTIDTL 242
>gi|410625830|ref|ZP_11336600.1| hypothetical protein GMES_1070 [Glaciecola mesophila KMM 241]
gi|410154450|dbj|GAC23369.1| hypothetical protein GMES_1070 [Glaciecola mesophila KMM 241]
Length = 774
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 34/257 (13%)
Query: 38 ILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRAWHAG 95
++H+T ++ I A S+HY+I E P +++++V +N RAWHAG
Sbjct: 1 MMHFTAIDYQKSIHALVDEGGL---SAHYLIPESNDPSYPKDSLEILKLVDENKRAWHAG 57
Query: 96 IGKWRRDRNLNSMSIGIHLVN---------GGVVGE--KFRSTNYYPFDENQIHTLGLLG 144
W+ LN SIGI +VN E + R + +D QI L L
Sbjct: 58 NSVWQGRSELNDSSIGIEIVNVPECHFDKEAKTTSEHGENRLCVFPDYDSKQIELLIALS 117
Query: 145 KDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
K I+++ I P V+GH+DIAP K DPGP FPW +LY GIGAW + T E+ +
Sbjct: 118 KQILARNPDISPTKVVGHSDIAPSRKNDPGPRFPWFELY-QAGIGAWY--ENTTFESYWQ 174
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKR-----SVIRAFKTHFSANQNPERIYA 258
+F +P + G+ L+AYGYNV T R +VI AF+ HF P ++
Sbjct: 175 RFNQYQP-----NIGLVQSALRAYGYNVLETGIRDEQTSNVISAFQMHFL----PWQVTG 225
Query: 259 DITTEDMFWAWALVAKY 275
++ +AL+ KY
Sbjct: 226 KADSKTAAAVFALLDKY 242
>gi|254510727|ref|ZP_05122794.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacteraceae bacterium KLH11]
gi|221534438|gb|EEE37426.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacteraceae bacterium KLH11]
Length = 227
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 35/229 (15%)
Query: 8 MPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYV 67
MP P P W + N RDG+ ++LHYT + A + AH + S+HY+
Sbjct: 1 MPSITERP-PIWHPSPNFGPRRDGLKPTLIVLHYTAMHSADDALERLCDPAHEV-SAHYL 58
Query: 68 ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
I G + Q+V + RAWHAG G+W ++NS SIGI L N G
Sbjct: 59 IGRD-------GTLWQLVHEPDRAWHAGAGEWHGQTDINSRSIGIELDNAGT-------- 103
Query: 128 NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGI 187
+PF Q+ L L DI+ ++ I PQ V+GH+D+APG K+DPGP F W +L
Sbjct: 104 --HPFAAPQMSALDHLLPDIMGRWNIPPQGVIGHSDMAPGRKIDPGPKFDWQRL------ 155
Query: 188 GAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK 236
E A R + PRK +F +L +A G++ + ++
Sbjct: 156 -------ERQNLAARRGYDDG---PRKASPDLFRKLARAAGFSANVDDE 194
>gi|372268378|ref|ZP_09504426.1| hypothetical protein AlS89_10765 [Alteromonas sp. S89]
Length = 321
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 25/259 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
V++L++H+T +F + T + + SSHY+I E P +V Q+V ++ RA
Sbjct: 50 VRFLVMHFTAIDFDTSLRVLTQPSSSPV-SSHYLIPEHNDPSYPHDDLRVYQLVDEHRRA 108
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST--------NYYP-FDENQIHTLGL 142
WHAG W LN SIGI +VN ST ++P FD QI +
Sbjct: 109 WHAGPSWWEDRSQLNDHSIGIEIVNQSYCRPPTESTPGIEAEQVCFFPEFDPEQIDLVIA 168
Query: 143 LGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L KDI++++ I P V+GH DI P K+DPGP FPW KL + G+GAW D+ TV+
Sbjct: 169 LSKDILARYPDITPTRVVGHGDIIPHYKIDPGPKFPWQKL-AEAGVGAWY--DDETVKRH 225
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV-----IRAFKTHFSANQNPERI 256
+ R+ R F L YGY + RAF+ HF P ++
Sbjct: 226 LDFLNGNTTSDRESVRRRFAHWLNDYGYGINPEESSEEEISLYTRAFQYHF----RPWKV 281
Query: 257 YADITTEDMFWAWALVAKY 275
++ + AL+ KY
Sbjct: 282 DGEVDNQTRAILLALLEKY 300
>gi|399044604|ref|ZP_10738207.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF122]
gi|398057024|gb|EJL49004.1| negative regulator of beta-lactamase expression [Rhizobium sp.
CF122]
Length = 254
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 117/250 (46%), Gaps = 32/250 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + G ++LHYT + R + SSHY + E G+V+Q
Sbjct: 18 NHGERAGGRKPDMILLHYTGMPTPDGALEWLC-RDESQVSSHYFVGED-------GEVLQ 69
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W+ + ++NS+SIGI + N G G YP + QI + L
Sbjct: 70 LVPEERRAWHAGKSYWQGETDINSVSIGIEIANAGHPG----GLPEYP--QEQIQAVIEL 123
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+D ++ I P+ VLGH+D+AP K+DPG FPW L+ G+G W+ P + +
Sbjct: 124 CRDCGQRWSIAPERVLGHSDVAPIRKVDPGEKFPWAGLHR-AGVGHWVEPAPIAGGRFFQ 182
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS-----VIRAFKTHFSANQNPERI-- 256
+ +P +L YGY IT + S + AF+ HF P RI
Sbjct: 183 RGDHGQPVE------ALQSMLSLYGYATEITGEFSDKTAGDVEAFQRHF----RPARIDG 232
Query: 257 YADITTEDMF 266
AD +T D
Sbjct: 233 IADFSTIDTL 242
>gi|424776485|ref|ZP_18203466.1| exported hydrolase [Alcaligenes sp. HPC1271]
gi|422888305|gb|EKU30694.1| exported hydrolase [Alcaligenes sp. HPC1271]
Length = 269
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 25/219 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+YL++HYT + A + T S+HY++S++ V ++VP+ RAWH
Sbjct: 50 VRYLVMHYTAGDHATSLKVLTQRDV----SAHYLVSDERRP-----TVYRLVPEERRAWH 100
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+G W +LN+ SIGI +VN G + + P+ QI + L KD+ + +
Sbjct: 101 AGLGSWYGFTDLNTGSIGIEIVNMG----RLADGRWAPYTSGQIEAIKALLKDLAQRHGV 156
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
+ ++GH+D+AP K+DPGP FPW +L GIG W E A+ ++ RP P
Sbjct: 157 SARNIIGHSDVAPQRKLDPGPHFPWKEL-AQAGIGRWYK--ESQARALQAQYA-TRPLPS 212
Query: 214 KLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
LL+ GY + ++VI AF+ H+
Sbjct: 213 AAQ---TQALLRKAGYETPDSGVFDKATQNVIAAFQMHY 248
>gi|422621175|ref|ZP_16689839.1| N-acetylmuramoyl-L-alanine amidase, partial [Pseudomonas syringae
pv. japonica str. M301072]
gi|330901519|gb|EGH32938.1| N-acetylmuramoyl-L-alanine amidase, partial [Pseudomonas syringae
pv. japonica str. M301072]
Length = 199
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+Y+++HYT + + T H S+HY+I + + ++V ++ RAWH
Sbjct: 35 AQYVVMHYTSTSLERSLQLLT----HGEVSAHYLIGDDSK-----ATIYKLVDESARAWH 85
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG +W LNS SIGI +VN G E +YP+ E Q ++ +L KDIV + +I
Sbjct: 86 AGESEWEGRTWLNSSSIGIEIVNPGF-KETPTGRLWYPYTEAQTQSIIVLLKDIVKRNRI 144
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
P++++GH+DIAP K DPGPLFPW +L + G+G W PDE V
Sbjct: 145 DPKHIIGHSDIAPLRKQDPGPLFPWKRLAAE-GLGNW--PDERQV 186
>gi|350546041|ref|ZP_08915467.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526145|emb|CCD41117.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Burkholderia kirkii
UZHbot1]
Length = 174
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 11/173 (6%)
Query: 38 ILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIG 97
++HYT + A + T + S HYV+ + V Q+V + RAWHAG+
Sbjct: 1 MMHYTEIDEADSLAVLTGDPV----SVHYVVPDAPRVEKGEPVVYQLVTEAQRAWHAGLS 56
Query: 98 KWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQY 157
W+ LN+ SIGI VN G +G+ + P+ Q+ L L +DIV+++ I P
Sbjct: 57 SWQGATELNASSIGIENVNLGPIGD----GKWQPYPPAQVDALIKLSRDIVARYGIPPTR 112
Query: 158 VLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
V+GH+DIAP K+DPGP+FPW LY D G+GAW PD V A + P P
Sbjct: 113 VVGHSDIAPQRKIDPGPVFPWRALY-DAGVGAW--PDGAAVAAHLAGRDPKAP 162
>gi|392383185|ref|YP_005032382.1| N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan
binding domain [Azospirillum brasilense Sp245]
gi|356878150|emb|CCC99018.1| N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan
binding domain [Azospirillum brasilense Sp245]
Length = 236
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 112/236 (47%), Gaps = 38/236 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH +G+ V+ LILHYT A A + S+HY + E G V
Sbjct: 15 NHGPRPEGVVVELLILHYTGMPTAESALTRLCEPAAQV-SAHYTVDED-------GTVYA 66
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
VP++ RAWHAG+ WR ++NS SIGI +VN G +F Y PF Q+ + L
Sbjct: 67 HVPEDRRAWHAGLSSWRGQADVNSRSIGIEIVN---PGHEF---GYRPFPAVQMAAVADL 120
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP---DEMTVEA 200
DI+ + I P VLGH+DIAP K DPG LF W L GIG W P D+ +++
Sbjct: 121 CLDIMGRHGIAPADVLGHSDIAPARKEDPGELFDWPGLAA-RGIGLWPQPTAVDDTPIDS 179
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERI 256
A LL YGY+ T + V+ +F+ HF +PER+
Sbjct: 180 AESAEDVA-------------ALLGRYGYD---TAESRVLLSFQRHF----HPERL 215
>gi|395213376|ref|ZP_10400183.1| N-acetylmuramoyl-L-alanine amidase [Pontibacter sp. BAB1700]
gi|394456745|gb|EJF11002.1| N-acetylmuramoyl-L-alanine amidase [Pontibacter sp. BAB1700]
Length = 304
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 120/258 (46%), Gaps = 48/258 (18%)
Query: 36 YLILHYTVYNFA-HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T N H + FT SSHYVI GKV Q++ D+MRAWH
Sbjct: 76 FVIIHHTAQNSTEHTLKTFTMPSTKV--SSHYVIGRD-------GKVYQMLHDHMRAWHG 126
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL-GLLGKDIVSQFKI 153
G +W + +LNS SIGI L N G PF E I++L +LGK + + I
Sbjct: 127 GNSRWGSNTDLNSSSIGIELDNNGS----------EPFPEEMINSLIAVLGK-LKKEHSI 175
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK------- 206
+ +GH DIAP K+DP PLFPW K D G G W D + E ++R+
Sbjct: 176 PAENFIGHADIAPVRKVDPSPLFPW-KTLADNGFGLWFDEDVLEKEQVLREVPVGGEGDQ 234
Query: 207 ---------PARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIY 257
P P + L+ L+ GY+V N + +RAFK HF N +
Sbjct: 235 SPLLVMETVPKYTLPEHFNP---LDALRIIGYDV--RNPEAAVRAFKIHFIQND----VN 285
Query: 258 ADITTEDMFWAWALVAKY 275
+ +T ++ + L KY
Sbjct: 286 SPLTEDEKLILYNLYQKY 303
>gi|417859466|ref|ZP_12504522.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens F2]
gi|338822530|gb|EGP56498.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens F2]
Length = 255
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 110/243 (45%), Gaps = 32/243 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + + ++LHYT A ++ N + SSHY I
Sbjct: 10 GAAVAPSP------NHGERQGVAGPDIILLHYTGMTTADGALSWLCNPESQV-SSHYFIF 62
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG W D ++NS SIGI + N G G
Sbjct: 63 ED-------GRVIQMVPETRRAWHAGKSTWAGDEDINSRSIGIEIANQGHPG------GL 109
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F E Q+ + L +D ++ I P+ VL H+D+AP K+DPG FPW + +G+G
Sbjct: 110 PEFPEKQVAAVIELCRDCGQRWNIAPERVLAHSDVAPIRKVDPGEKFPW-DILSQHGVGH 168
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY V IT + AF+
Sbjct: 169 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGVEITGAYCEKTEGAVAAFQ 222
Query: 245 THF 247
HF
Sbjct: 223 RHF 225
>gi|395765682|ref|ZP_10446276.1| hypothetical protein MCO_00908 [Bartonella sp. DB5-6]
gi|395411236|gb|EJF77770.1| hypothetical protein MCO_00908 [Bartonella sp. DB5-6]
Length = 314
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 138/308 (44%), Gaps = 82/308 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF + A T R S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTAINFKESVMALTGERV----SAHYLVPDPSEQTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVN-------------------------------- 116
RAWH G+ W N+N SIGI +VN
Sbjct: 75 ERAWHTGVSSWAGRNNINDTSIGIEIVNLATSHSDGVGQTYVEAALTDARVLNLVNKDEC 134
Query: 117 -----------GGVVG------EKFRSTNYY-------PFDENQIHTLGLLGKDIVSQF- 151
G VG E T Y P++ QI + L +I+ ++
Sbjct: 135 QLQTDVGSWTEGACVGGTALQLETINLTTYNNKDFVFPPYNPTQIDAVKELALNILQRYP 194
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+GH+DIA G K DPG FPW +LY+ GIGAW D+ +F ++ +
Sbjct: 195 DIMPVDVVGHSDIAIGRKSDPGAAFPWKELYV-AGIGAWY--DDELKNHYQEQF--SKSF 249
Query: 212 PRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
P K D L LK YGY+++I +++IRAF+ HF +N + I D+ T +
Sbjct: 250 PAKED---ILVKLKCYGYDISIACTEIGYKNLIRAFQLHFR-QENYDGIL-DVETAAII- 303
Query: 268 AWALVAKY 275
+ALV KY
Sbjct: 304 -YALVDKY 310
>gi|75675235|ref|YP_317656.1| N-acetylmuramoyl-L-alanine amidase [Nitrobacter winogradskyi
Nb-255]
gi|74420105|gb|ABA04304.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter
winogradskyi Nb-255]
Length = 283
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 117/259 (45%), Gaps = 38/259 (14%)
Query: 1 MPSSIHGMPGYVIDP--FPEWEKNRNHYDSRDGMSVKYLILHYTVY-----NFAHIITAF 53
+P +I GMP +V D + + N D G ++LHYT A + T+
Sbjct: 17 VPKAIVGMPTFVPDSSLVSDTVPSLNFGDRAKGRQPDMIVLHYTGMPDVEGALARLCTSG 76
Query: 54 TSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIH 113
T S+HYV+ E G+V+Q V ++ RAWHAG+ W + ++NS SIGI
Sbjct: 77 TEV------SAHYVVLED-------GRVVQCVQESKRAWHAGVASWAGEEDINSCSIGIE 123
Query: 114 LVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPG 173
+VN G Y F Q+ + L + I+ + I ++GH+D+AP K DPG
Sbjct: 124 IVNRG------HDWGYPAFPLRQVAAVIALCRGIIHRRDIPAHRIVGHSDVAPARKKDPG 177
Query: 174 PLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI 233
FPW L D G+G W+ P + +++ D + L YGY +
Sbjct: 178 EKFPWHSLA-DSGVGHWIRPAPIVAGEVLKTGSEGD------DVRALQQSLARYGYGIKA 230
Query: 234 TNK-----RSVIRAFKTHF 247
T K V+ AF+ HF
Sbjct: 231 TGKFDTATMEVVTAFQRHF 249
>gi|365887020|ref|ZP_09425905.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. STM
3809]
gi|365337433|emb|CCD98436.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. STM
3809]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 114/250 (45%), Gaps = 33/250 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
N + + G +ILHYT + + IT + S+HY++ E G++I
Sbjct: 43 NFGERKGGRQPDMIILHYTGMPDVEGAITKLCTPGTEV--SAHYIVLED-------GRII 93
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ MRAWHAG+ W D ++NS SIG+ +VN G Y F QI +
Sbjct: 94 QCVPEAMRAWHAGLSSWGGDEDINSCSIGVEIVNRG------HDWGYPDFPPRQIAAVIA 147
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L + I+ + + VLGH+D+AP K DPG FPW L + G+G W+ P +T +
Sbjct: 148 LCRGIMLRRNVPAHRVLGHSDVAPSRKKDPGEKFPWHSLA-NSGVGHWVQPAAITKGETL 206
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIY 257
+ D + L YGY V IT K V+ AF+ HF PER+
Sbjct: 207 KLGSIGD------DVKGLQKALAKYGYGVPITGKFDGLTMEVVTAFQRHF----RPERVD 256
Query: 258 ADITTEDMFW 267
I W
Sbjct: 257 G-IADRSTLW 265
>gi|395651076|ref|ZP_10438926.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 255
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 126/262 (48%), Gaps = 28/262 (10%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG-----K 80
++ R+ V+ ++LHYT FA + T S+HY++ + G +
Sbjct: 13 FNERNDEPVRQVVLHYTAEPFASSLHCLTRQGV----SAHYLLPDPHDPSYRGAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
++V ++ RAWHAG+ +W NLNS SIGI +VN + YP + QI L
Sbjct: 69 AFRLVDEDKRAWHAGVSQWGGRDNLNSRSIGIEIVNQAWDDGEVLHFVAYP--DEQIEVL 126
Query: 141 GLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L +DI+ ++ ++ P +LGH+D+A K DPGP PW +LY + GIGAW DE T
Sbjct: 127 IALLRDILERYPRVGPTDILGHSDVAYWRKSDPGPRLPWRRLY-EAGIGAWF--DEPTQA 183
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV---IRAFKTHFSANQNPERI 256
R+F A P +++R + YGY N++ RAF+ HF P+
Sbjct: 184 MYQRRFCVALPPEVEVERA-----FQRYGY-APAKNRQGFELRTRAFQMHF----RPQDY 233
Query: 257 YADITTEDMFWAWALVAKYGSM 278
+ + +AL KY +
Sbjct: 234 CGSLDAQTCAILYALNEKYRGL 255
>gi|422338657|ref|ZP_16419617.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355371784|gb|EHG19127.1| anhydro-N-acetylmuramyl-tripeptide amidase [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 297
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 32/254 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
++++++HYT + I TS+R SSH+++ +++ K+ +VP RAWH
Sbjct: 62 IQFIVVHYTATDNLGSIKELTSSRV----SSHFLVLDEDD-----NKIYNLVPLEQRAWH 112
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-YYPFDEN------QIHTLGLLGKD 146
AG +R N+N S+GI +V+ G+ E N Y+P+D QI + K
Sbjct: 113 AGASAFRGRTNINDTSVGIEIVSDGIAREYRPDPNPYHPYDHYVDYKPIQIEKTAQIIKY 172
Query: 147 IVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFK 206
+ ++ + + ++ H+DIAP K DPG FPW +LY Y IGAW E ++F
Sbjct: 173 VAEKYNVPARNIVAHSDIAPSRKKDPGAKFPWKELYDKYNIGAWYD------ETDKQEFM 226
Query: 207 PARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIYADIT 261
+ R I EL K YGY + ++ + V+ AF+ HF NP+ ++
Sbjct: 227 DEEKFKATSIREIKDELRK-YGYEINRLDEWDKESKDVVYAFQLHF----NPKNATGEMD 281
Query: 262 TEDMFWAWALVAKY 275
E AL KY
Sbjct: 282 LETFAILKALNKKY 295
>gi|359791247|ref|ZP_09294111.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359252763|gb|EHK55972.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 225
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 26/220 (11%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A + A + SSHY++ E G+++Q+V ++ RAWHAG
Sbjct: 2 IVLHYTGMETGAAAEARLCDPASEV-SSHYLVHED-------GRIVQMVRESDRAWHAGK 53
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
WR ++NS S+GI +VN G Y F + QI + L + I + +KP+
Sbjct: 54 SSWRGVTDINSRSVGIEIVNPG------HEFGYREFPKIQILAVIELCRGIAHRHGVKPE 107
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
+LGH+D+APG K+DPG FPW +L +GIG ++ P + AI P
Sbjct: 108 MILGHSDVAPGRKVDPGEKFPWRRL-ARHGIGHFVEPARLRGGAISSLGDSGAPVEE--- 163
Query: 217 RGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
+L YGY V IT + AF+ HF Q
Sbjct: 164 ---LQSMLALYGYGVEITGVFDRQTEIAVAAFQRHFRPRQ 200
>gi|240851078|ref|YP_002972478.1| N-acetylmuramoyl-L-alanine amidase [Bartonella grahamii as4aup]
gi|240268201|gb|ACS51789.1| N-acetylmuramoyl-L-alanine amidase [Bartonella grahamii as4aup]
Length = 268
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 132/264 (50%), Gaps = 38/264 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT +F I A T + S+HY++ + E Y G ++ +V +N
Sbjct: 19 VRFLVMHYTALDFKSSIMALTGEKV----SAHYLVPDPSEQTYREAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV-----VGEKFRSTNYY-------PFDENQ 136
RAWHAG+ W +LN SIGI +VN E Y+ P++ Q
Sbjct: 75 ERAWHAGVSSWAGHSHLNDASIGIEIVNLATGHSESPEETVDFMAYHDEGGIFPPYNPIQ 134
Query: 137 IHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
I + L +I+ ++ I P V+GH+DIA G K DPG FPW +LY GIGAW DE
Sbjct: 135 IDAVKELALNILQRYPDIMPTDVVGHSDIAIGRKSDPGAAFPWRELYR-AGIGAWYD-DE 192
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQ 251
+ + + ++ P K D L LK YGY+++ + +IRAF+ HF +
Sbjct: 193 LKSH---YQEQFSKNLPPKED---VLAKLKCYGYDISAACTQIGYKDLIRAFQLHFR-QE 245
Query: 252 NPERIYADITTEDMFWAWALVAKY 275
N + I D+ T + +ALV KY
Sbjct: 246 NYDGIL-DVETAAIL--YALVDKY 266
>gi|410613388|ref|ZP_11324447.1| hypothetical protein GPSY_2724 [Glaciecola psychrophila 170]
gi|410167050|dbj|GAC38336.1| hypothetical protein GPSY_2724 [Glaciecola psychrophila 170]
Length = 830
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 33/246 (13%)
Query: 24 NHYDSRD-GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--K 80
+H S++ +K+L++HYT ++ +TA SSHY+I E+ K
Sbjct: 40 SHMQSKNYSQRIKFLVMHYTAIDYQKSVTALVDEGGL---SSHYLIPERNDPSYQDSQLK 96
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-------GGVVGEKFRSTN----- 128
VIQ+V ++ RAWHAG W+ +LN SIGI +VN V K R +
Sbjct: 97 VIQLVDESSRAWHAGKSYWQGREDLNDQSIGIEIVNVPECMRDNTSVDLKKRQNDPSRLC 156
Query: 129 -YYPFDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
+ +D QI L L KDI+++ I P V+GH+DIAP K DPGP FPW +LY G
Sbjct: 157 IFPDYDPKQIELLITLSKDILARNPDISPTAVIGHSDIAPTRKNDPGPRFPWYQLY-QRG 215
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIR 241
IGAW D T++ F YP + + L YGY + T +
Sbjct: 216 IGAWYDND--TLKTYWEMFN---AYPPSI--SLIQHALGTYGYGIVETGMADSATLDTLS 268
Query: 242 AFKTHF 247
AF+ HF
Sbjct: 269 AFQMHF 274
>gi|410473806|ref|YP_006897087.1| exported hydrolase [Bordetella parapertussis Bpp5]
gi|408443916|emb|CCJ50610.1| putative exported hydrolase [Bordetella parapertussis Bpp5]
Length = 275
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE S ++ P+ + QI TL +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-TEGIP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|427815755|ref|ZP_18982819.1| putative exported hydrolase [Bordetella bronchiseptica 1289]
gi|410566755|emb|CCN24324.1| putative exported hydrolase [Bordetella bronchiseptica 1289]
Length = 275
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE S ++ P+ + QI L +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIEALIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + A P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-AEGIP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|410421214|ref|YP_006901663.1| hydrolase [Bordetella bronchiseptica MO149]
gi|408448509|emb|CCJ60192.1| putative exported hydrolase [Bordetella bronchiseptica MO149]
Length = 275
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE S ++ P+ + QI TL +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-TEGVP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|85714964|ref|ZP_01045949.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp.
Nb-311A]
gi|85698161|gb|EAQ36033.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp.
Nb-311A]
Length = 285
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 124/276 (44%), Gaps = 44/276 (15%)
Query: 1 MPSSIHGMPGYVIDP--FPEWEKNRNHYDSRDGMSVKYLILHYTVY-----NFAHIITAF 53
+P +I GMP +V D + + N D G ++LHYT A + T+
Sbjct: 17 IPKAIVGMPTFVPDSSLVSDTVPSLNFGDRAKGRQPDMIVLHYTGMPDVEGALARLCTSG 76
Query: 54 TSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIH 113
T S+HYV+ E G+V+Q V + RAWHAG+ W + ++NS SIGI
Sbjct: 77 TEV------SAHYVVLED-------GRVVQCVQEAKRAWHAGVASWAGEEDINSCSIGIE 123
Query: 114 LVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPG 173
+VN G Y F QI + L + I+ + I ++GH+D+AP K DPG
Sbjct: 124 IVNRG------HDWGYPAFPLRQIAAVIALCRGIIHRRNIPAHRIVGHSDVAPARKKDPG 177
Query: 174 PLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI 233
FPW L D G+G W+ P + +++ + + L YGY +
Sbjct: 178 EKFPWHSLA-DSGVGHWVRPAPIVAGDVLKTGSEGD------NVQALQQSLARYGYGIKA 230
Query: 234 TNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
T K V+ AF+ HF PE++ AD +T
Sbjct: 231 TGKFDTATTEVVTAFQRHF----RPEKVDGLADQST 262
>gi|421502899|ref|ZP_15949851.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mendocina DLHK]
gi|400346356|gb|EJO94714.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mendocina DLHK]
Length = 260
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 28/231 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
+H + V+Y++LHYT + + T SSHY+I G P V +
Sbjct: 25 SHTATGQNSRVQYVVLHYTSADLQRSLNLLTQTEV----SSHYLI----GDAPP--TVYR 74
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V +N RAWH G+ +W+ LN+ +IGI LVN G E + PF QI TL +L
Sbjct: 75 LVDENRRAWHVGVSEWQGRTWLNASTIGIELVNQGYY-ETPAGRYWQPFAPQQIDTLIVL 133
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDIV + ++ ++ H+D+AP K+DPGPLFPW +L D G+ W PDE V
Sbjct: 134 LKDIVQRHQLPLGSIIAHSDVAPQRKVDPGPLFPWKRL-ADEGLVPW--PDEARVARQQA 190
Query: 204 KFKPARPYPRKLDRGI--FLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P GI F E L GY V + R+VI AF+ +
Sbjct: 191 LFAISLP-------GIEWFQEQLAQQGYTVPRHGELDEATRNVIAAFQMKY 234
>gi|146284368|ref|YP_001174521.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri A1501]
gi|339496098|ref|YP_004716391.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386022778|ref|YP_005940803.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri DSM 4166]
gi|145572573|gb|ABP81679.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri A1501]
gi|327482751|gb|AEA86061.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri DSM 4166]
gi|338803470|gb|AEJ07302.1| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 262
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 123/258 (47%), Gaps = 38/258 (14%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+DSR V++++LHYT + + + SSHY+I E + ++V
Sbjct: 31 HDSR----VQFIVLHYTSTDLPRSLELLSGRDV----SSHYLIGESPAT------IYRLV 76
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
++ RAWHAG +W LN+ SIGI LVN G +YP+ + QI L +L K
Sbjct: 77 DEDRRAWHAGESEWNGRTWLNATSIGIELVNQGYEQSADGRRLWYPYSQAQIDALVVLLK 136
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI+++ +KP ++GH+DIAP K+DPGPLFPW +L + G+ W PD V A +
Sbjct: 137 DIMARHGLKPGAIIGHSDIAPQRKVDPGPLFPWKRL-AEEGLVPW--PDAGAVAAAQAHY 193
Query: 206 K----PARPYPRKLDRGIFLELLKAYGYNV-----TITNKRSVIRAFKTHFSANQNPERI 256
PA G F E L A GY V R+VI AF+ + P R
Sbjct: 194 AAAGLPA--------IGWFQEALAAQGYRVPRHGHLDDETRNVIAAFQMKY----RPTRF 241
Query: 257 YADITTEDMFWAWALVAK 274
+ E LVA+
Sbjct: 242 DGEPDAETAAMLQVLVAQ 259
>gi|374596070|ref|ZP_09669074.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Gillisia limnaea DSM 15749]
gi|373870709|gb|EHQ02707.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Gillisia limnaea DSM 15749]
Length = 307
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 47/259 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++ILH+T + A +T FT + S+HYVI + G++ Q++ D RAWHA
Sbjct: 76 FVILHHTAQDSLAQTLTTFT--KVPTQVSAHYVIGK-------NGEIYQMLNDYYRAWHA 126
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G GKW +LNS S+GI L N G + PF QI++L L K + ++ I
Sbjct: 127 GAGKWGNTTDLNSASLGIELDNNG----------FEPFSPLQINSLIKLLKVLKERYNIP 176
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR----- 209
+GH+DIAPG K+DP P FPW KL + G G W DE+ V IV +P
Sbjct: 177 AANFIGHSDIAPGRKVDPNPKFPW-KLLAEEGFGLWY--DEIEVPVIVLDGRPKTGNLNI 233
Query: 210 ---------PYPRKLDRGIFL----ELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERI 256
P P + D L+ GY+ +N + I+AFK HF ++ +
Sbjct: 234 PVVTEGNIVPEPTESDLATTSVDPKMALRIIGYDT--SNMEAAIKAFKLHFIQSE----V 287
Query: 257 YADITTEDMFWAWALVAKY 275
++ D+ L KY
Sbjct: 288 NGELNAMDLLILENLYKKY 306
>gi|146305206|ref|YP_001185671.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mendocina ymp]
gi|145573407|gb|ABP82939.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas mendocina
ymp]
Length = 260
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 28/231 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
+H + V+Y++LHYT + + T SSHY+I G P V +
Sbjct: 25 SHTATGQNSRVQYVVLHYTSADLQRSLNLLTQTEV----SSHYLI----GDAPP--TVYR 74
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V +N RAWH G+ +W+ LN+ +IGI LVN G E + PF QI TL +L
Sbjct: 75 LVDENRRAWHVGVSEWQGRTWLNASTIGIELVNQGYY-ETPAGRYWQPFAPQQIDTLIVL 133
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDIV + ++ ++ H+D+AP K+DPGPLFPW +L D G+ W PDE V
Sbjct: 134 LKDIVQRHQLPLGSIIAHSDVAPQRKVDPGPLFPWKRL-ADEGLVPW--PDEARVARQQA 190
Query: 204 KFKPARPYPRKLDRGI--FLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P GI F E L GY V + R+VI AF+ +
Sbjct: 191 LFAISLP-------GIEWFQEQLAQQGYTVPRHGELDEATRNVIAAFQMKY 234
>gi|429771148|ref|ZP_19303179.1| N-acetylmuramoyl-L-alanine amidase [Brevundimonas diminuta 470-4]
gi|429182430|gb|EKY23532.1| N-acetylmuramoyl-L-alanine amidase [Brevundimonas diminuta 470-4]
Length = 253
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 120/258 (46%), Gaps = 43/258 (16%)
Query: 8 MPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYV 67
M GY P P ++ R D L+LHYT A + A S+HYV
Sbjct: 1 MTGYTDAPSPNFDARRGPPD--------MLVLHYTGMETAEAAIERLRD-AEAKVSAHYV 51
Query: 68 ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
+ E G V+++VP+ RAWHAG G W+ + ++N+ SIGI +VN G +F
Sbjct: 52 VDED-------GSVLRLVPEERRAWHAGRGAWQGETDVNAASIGIEIVN---PGHEF--- 98
Query: 128 NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGI 187
Y F E QI + L DI +++ I ++GH+D+AP K DPG LFPW +L + G
Sbjct: 99 GYRAFPEAQIEAVIALVGDIRTRWSIPDARIIGHSDMAPERKQDPGELFPWKRLA-EAGH 157
Query: 188 GAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVT-----ITNKRS 238
G W P + A+ P D G+ + +L++ GY V R
Sbjct: 158 GLWFDPAPERIGALGAPLSPG-------DEGLGVIVLRSGLHRLGYAVQPGGAYDDETRL 210
Query: 239 VIRAFKTHFSANQNPERI 256
+ AF+ H+ P+R+
Sbjct: 211 TVEAFQRHW----RPDRV 224
>gi|414174970|ref|ZP_11429374.1| hypothetical protein HMPREF9695_03020 [Afipia broomeae ATCC 49717]
gi|410888799|gb|EKS36602.1| hypothetical protein HMPREF9695_03020 [Afipia broomeae ATCC 49717]
Length = 257
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 34/247 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
N D + ++ ++LHYT + + A I + S+HYV+ E G ++
Sbjct: 19 NFGDRKGVLAPNMIVLHYTGMADAASAIVRLCTTGTEV--SAHYVVLED-------GNIV 69
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q V ++ RAWHAG W + ++NS+SIGI +VN G Y F QI +
Sbjct: 70 QCVRESNRAWHAGASSWGNETDINSLSIGIEIVNQG------HDLGYTDFPLRQIAAVIA 123
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L K I+ + I +LGH+D+APG K DPG FPW +L D G+G W+ P IV
Sbjct: 124 LCKGIMIRRDIPKHRILGHSDVAPGRKKDPGEKFPW-RLLADSGVGLWVEP-----APIV 177
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERI- 256
R + D +LL ++GY V + V+ AF+ HF PERI
Sbjct: 178 RGVQTMLGQSGD-DVLALQKLLASFGYGVPLNGLYDAATMDVVAAFQRHF----RPERID 232
Query: 257 -YADITT 262
AD +T
Sbjct: 233 GIADTST 239
>gi|13471560|ref|NP_103126.1| hypothetical protein mll1570 [Mesorhizobium loti MAFF303099]
gi|14022302|dbj|BAB48912.1| mll1570 [Mesorhizobium loti MAFF303099]
Length = 251
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 8 MPGYVID-PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
M G++ D P E + N RD + ++LHYT A+ + A + SSHY
Sbjct: 1 MSGFLPDEPSAEVRVSPNFGPRRDVLKPDMIVLHYTGMATGAGAEAWLCDPASEV-SSHY 59
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
++ E G ++Q+V ++ RAWHAG W ++NS S+GI +VN G S
Sbjct: 60 LVHEN-------GHIVQMVRESDRAWHAGKSSWFGRTDINSCSVGIEIVNPG------HS 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
Y F QI + L K I ++ I VL H+D+APG K+DPG FPW L+ G
Sbjct: 107 LGYPGFPRRQIEAVIGLCKGIAARHAIPAMRVLAHSDVAPGRKIDPGEKFPWAALF-KAG 165
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIR 241
+G + A +R+ + R D +L YGY V I+ + V+
Sbjct: 166 VG------HLVPAAPIRRGAALKAGERGADVEALQSMLALYGYGVEISGIFDHQTQIVVE 219
Query: 242 AFKTHF 247
AF+ HF
Sbjct: 220 AFQRHF 225
>gi|407776382|ref|ZP_11123655.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor pacificus pht-3B]
gi|407301673|gb|EKF20792.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor pacificus pht-3B]
Length = 266
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N + R G LILHYT A+ + + SSHY++ E G+V+Q
Sbjct: 28 NFGERRGGGRPDALILHYTGMETGDGAQAWLCDPRSEV-SSHYLVHED-------GRVVQ 79
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V + RAWHAG G WR ++NS SIGI +VN G + F + QI + L
Sbjct: 80 MVREADRAWHAGRGSWRGVDDVNSFSIGIEIVNPG------HFLGFTEFPKPQIAAVIAL 133
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
G DI + I P+ VL H+DI PG K+DPG FPW L G+G ++P +T I+
Sbjct: 134 GNDICRRHAIPPERVLAHSDITPGRKIDPGEKFPWEALAA-AGLGHLVAPAPITPGRILG 192
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
P L R +L YGY V T R V++ F+ HF
Sbjct: 193 PGD-GGPAVAALQR-----MLALYGYGVEETGLYDEATRIVVQEFQRHF 235
>gi|372279211|ref|ZP_09515247.1| N-acetylmuramoyl-L-alanine amidase [Oceanicola sp. S124]
Length = 236
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
S G PG + P W + NH D RDG+ ++LH+T A +
Sbjct: 2 SGAAGAPGRIGAPGALWHPSPNHGDRRDGLRPGLVVLHHTAMQSAEAALERLCDATFEAP 61
Query: 63 -SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVG 121
S+HY+I+E G++ Q+V + RAWHAG G W ++NS SIGI L N
Sbjct: 62 VSAHYLIAED-------GRLWQLVDERARAWHAGAGSWGGRGDVNSRSIGIELAN----- 109
Query: 122 EKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
P+ E Q+ L L + I+++++I P+ V+ H+D+APG K DPGP F W +L
Sbjct: 110 -----PAPNPYAEPQMARLEALLRGILARWRIPPEGVIAHSDMAPGRKTDPGPKFDWRRL 164
Query: 182 YLDYGIGAWLSPDEMTV 198
G+ W PD
Sbjct: 165 AR-QGLSVW--PDAQAA 178
>gi|285017235|ref|YP_003374946.1| N-acetylmuramoyl-l-alanine amidase precursor [Xanthomonas
albilineans GPE PC73]
gi|283472453|emb|CBA14958.1| probable n-acetylmuramoyl-l-alanine amidase precursor protein
[Xanthomonas albilineans GPE PC73]
Length = 272
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 42/240 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHNLHSSHYVISEK 71
+P +W + N+ R + +++H+T N + T + N L S+HY+I
Sbjct: 35 NPLAQWVPSPNYNQRR----AQLIVIHFTGKNSLQESLDTLRSRNGLGELVSAHYLIG-- 88
Query: 72 EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
P GK Q+V D +RAWHAG+G+W ++NS SIGI L N G P
Sbjct: 89 -----PDGKRYQLVSDQLRAWHAGVGRWGTITDVNSASIGIELDNDGKT----------P 133
Query: 132 FDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWL 191
F + QI +L +L +D+ ++ I ++GH D AP K+DPGPLFPW +L D G G W
Sbjct: 134 FPQAQIDSLLVLLQDLCTRLHIPRTQIVGHEDFAPSRKVDPGPLFPWKQLA-DAGFGRWP 192
Query: 192 SPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQ 251
+ F P + L +GY I ++ + +RAF H+ N+
Sbjct: 193 A---ADAPPAPSGFDP-------------WQALALFGY--PIGDRAAAMRAFHHHYRGNE 234
>gi|427825832|ref|ZP_18992894.1| putative exported hydrolase [Bordetella bronchiseptica Bbr77]
gi|410591097|emb|CCN06194.1| putative exported hydrolase [Bordetella bronchiseptica Bbr77]
Length = 275
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVV---GEKFR-------STNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G G R S ++ P+ + QI TL +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGGGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-TEGVP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|419953060|ref|ZP_14469206.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri TS44]
gi|387970336|gb|EIK54615.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas stutzeri TS44]
Length = 259
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+R H +D + + ++LHYT + H + T SSHY+I + +
Sbjct: 24 DRYHAVGQDSRA-QVIVLHYTSSDLEHSLALLTEGEV----SSHYLIGAQPAT------I 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V ++ RAWHAG +W LNS SIGI LVN G V +YP+ + QI L
Sbjct: 73 YRLVDEDRRAWHAGQSEWNGRTWLNSSSIGIELVNRGYVEGDDGRRLWYPYTDEQIDALV 132
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
LL KDI+ + +KP ++GH+DIA K+DPGPLFPW +L D G+ W PD V A
Sbjct: 133 LLLKDIMQRHGLKPGAIVGHSDIAAQRKVDPGPLFPWKRL-ADAGLVPW--PDAAAVAAQ 189
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNV-----TITNKRSVIRAFKTHF 247
F P D F L+ GY V R+V+ AF+ +
Sbjct: 190 RAVFAVTPP-----DIAWFQLALQLQGYKVPRHGELDEETRNVLAAFQMKY 235
>gi|365880855|ref|ZP_09420199.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. ORS
375]
gi|365291045|emb|CCD92730.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. ORS
375]
Length = 283
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 1 MPSSIHGMPGYVIDPFPEWE--KNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNR 57
MP + +P + D + + N + + G +ILHYT + + IT +
Sbjct: 18 MPKGVSDLPMFTPDSSIASDVIPSANFGERKGGRQPDMIILHYTGMPDVEGAITKLCT-- 75
Query: 58 AHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNG 117
A + S+HYV+ E G+++Q VP+ +RAWHAG+ W + ++NS SIG+ +VN
Sbjct: 76 AGSEVSAHYVVLED-------GRIVQCVPEALRAWHAGLSSWGGEEDINSCSIGVEIVNR 128
Query: 118 GVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP 177
G Y F QI + L + I+ + + VLGH+D+AP K DPG FP
Sbjct: 129 G------HDWGYPDFPPRQIAAVIALCRGIMLRRNVPAHRVLGHSDVAPSRKKDPGEKFP 182
Query: 178 WGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK- 236
W L + G+G W+ P +T ++ D + L YGY V IT K
Sbjct: 183 WHSLA-NSGVGHWVQPAAITKGETLKLGSIGD------DVKGLQKALAKYGYGVPITGKF 235
Query: 237 ----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
V+ AF+ HF PE++ I W
Sbjct: 236 DGLTMEVVTAFQRHF----RPEKVDG-IADRSTLW 265
>gi|440740430|ref|ZP_20919914.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens
BRIP34879]
gi|447917563|ref|YP_007398131.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas poae RE*1-1-14]
gi|440376505|gb|ELQ13172.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens
BRIP34879]
gi|445201426|gb|AGE26635.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas poae RE*1-1-14]
Length = 255
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 26/232 (11%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R+G V+ +ILHYT FA + T + S+HY++ + E Y G +
Sbjct: 13 FNQRNGEHVQQVILHYTAAPFASSLRTLTRDGV----SAHYLLPDPHEPGYRAAGYDELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK-FRSTNYYPFDENQIHT 139
V ++V ++ RAWHAG+ +W NLNS SIG+ +VN + F Y P Q+
Sbjct: 69 VFRLVKEDQRAWHAGVSQWGGRDNLNSRSIGVEIVNQARDDKGVFTFPAYAP---QQVDV 125
Query: 140 LGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
L L +D++ ++ + P +LGH+D+A K DPGP PW L+ + G+GAW DE T
Sbjct: 126 LIALLRDVLGRYPHVGPTDILGHSDVAYWRKSDPGPQLPWRCLF-EAGVGAWF--DETTR 182
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV---IRAFKTHF 247
R+F P +++R + YGY +N+R+ RAF+ HF
Sbjct: 183 MMYQRRFNLGLPPEVEVERA-----FQRYGYKAA-SNRRTFELRTRAFQMHF 228
>gi|399518724|ref|ZP_10759678.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399113218|emb|CCH36236.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 260
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
+ +H + V+Y++LHYT + + T SSHY+I + V
Sbjct: 23 DDSHTATGQNSRVQYVVLHYTSADLQRSLDLLTQTEV----SSHYLIGDAPPT------V 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
++V +N RAWH G+ +W+ LNS +IGI LVN G + + PF QI TL
Sbjct: 73 YRLVDENRRAWHVGVSEWKGRTWLNSTTIGIELVNQGYY-QTPAGRYWQPFAPQQIDTLI 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
+L KDIV + ++ ++ H+D+AP K+DPGPLFPW +L D G+ W P+E V
Sbjct: 132 VLLKDIVKRHQLPLGSIIAHSDVAPQRKVDPGPLFPWKRL-ADEGLAPW--PNEDAVARQ 188
Query: 202 VRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P + F E L GY V + R+VI AF+ +
Sbjct: 189 QALFSTSLPSVQ-----WFQEQLAQNGYTVPQHGELDEATRNVIAAFQMKY 234
>gi|381395991|ref|ZP_09921683.1| hypothetical protein GPUN_2702 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328171|dbj|GAB56816.1| hypothetical protein GPUN_2702 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 783
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 121/255 (47%), Gaps = 31/255 (12%)
Query: 38 ILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRAWHAG 95
++H+T N+ I F N + SSHY+I + P +V+Q+V + RAWHAG
Sbjct: 1 MMHFTAVNYERSID-FLVNEGGGV-SSHYLIPMLNDESYPKSHIEVLQLVDEKERAWHAG 58
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGE--------KFRSTNYYP-FDENQIHTLGLLGKD 146
W+ +LN SIGI +VN E K + +P F+ QI L L KD
Sbjct: 59 QSYWQGRSSLNDSSIGIEIVNIPECIESDVPAGFIKPKDMCIFPEFEHKQIELLIALSKD 118
Query: 147 IVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
I+++ I P V+GH+DIAP K DPGP FPW KLY GIGAW D TV + F
Sbjct: 119 ILARNPDITPTAVVGHSDIAPSRKNDPGPRFPWQKLY-QAGIGAWYDND--TVAEYWQLF 175
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHFSANQNPERIYADI 260
P G+ E L YGY + T V+ AF+ HF P ++
Sbjct: 176 NHQSP-----STGLLQEALNIYGYAIDKTGVLDRQTLDVLGAFQMHFI----PWQVTYQA 226
Query: 261 TTEDMFWAWALVAKY 275
T+ +AL+ KY
Sbjct: 227 DTKTAATIFALLEKY 241
>gi|408377852|ref|ZP_11175451.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium albertimagni
AOL15]
gi|407747966|gb|EKF59483.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium albertimagni
AOL15]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 34/220 (15%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
L+LHYT A A+ N + SSHY++ E G+V+Q+VP++ RAWHAG
Sbjct: 31 LLLHYTGMPSAEGAQAWLCNPESQV-SSHYIVHED-------GRVVQMVPEDRRAWHAGK 82
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W + ++NS SIGI + N G + + QI T+ L + V + I P+
Sbjct: 83 SVWGGETDINSRSIGIEIANAG------HPAGLPDYPDRQIETVIELCLECVKRHDIAPE 136
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D+AP K+DPG FPW +L+ G+G W+ P + R F+ + D
Sbjct: 137 RVLAHSDVAPIRKVDPGENFPWDRLHR-AGVGHWVEPAPI---GGGRFFQ-------RGD 185
Query: 217 RGIFLELLKA----YGYNVTITNK-----RSVIRAFKTHF 247
RG +E L++ YGY + I+ + V+ AF+ HF
Sbjct: 186 RGQPVEALQSMLSLYGYGLEISGEFCPQTEGVVAAFQRHF 225
>gi|427818310|ref|ZP_18985373.1| putative exported hydrolase [Bordetella bronchiseptica D445]
gi|410569310|emb|CCN17403.1| putative exported hydrolase [Bordetella bronchiseptica D445]
Length = 275
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V +++ + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLMDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE S ++ P+ + QI TL +L
Sbjct: 93 AGISAWYGQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-TEGVP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|238796460|ref|ZP_04639968.1| Negative regulator of beta-lactamase expression [Yersinia
mollaretii ATCC 43969]
gi|238719665|gb|EEQ11473.1| Negative regulator of beta-lactamase expression [Yersinia
mollaretii ATCC 43969]
Length = 209
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 18/201 (8%)
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
++ +V +N RAWHAG+ W NLN SIGI +VN + +K ++ P+ QI
Sbjct: 18 RIFNLVDENARAWHAGVSSWAERTNLNDTSIGIEIVN--LASDKEGVWDFPPYPIEQIAA 75
Query: 140 LGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L +I+ ++ I P V+ H+DIAP K DPGP+FPW +LY + GIGAW D T
Sbjct: 76 VKQLAANILQRYPDITPVNVVAHSDIAPTRKSDPGPMFPWQELY-EEGIGAWYDID--TK 132
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQNPE 254
E +++F P K + + YGY+ +I + + ++RAF+ HF P
Sbjct: 133 EKFIQEFT-EEGLPAKDE---LVTHFGTYGYDASIASSEAGYQYLVRAFQLHF----RPS 184
Query: 255 RIYADITTEDMFWAWALVAKY 275
++ E +ALV KY
Sbjct: 185 NYDGEVDIETAAILYALVEKY 205
>gi|329890511|ref|ZP_08268854.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta
ATCC 11568]
gi|328845812|gb|EGF95376.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta
ATCC 11568]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 36/241 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R G L+LHYT A A + + S+HYV+ E G ++++
Sbjct: 11 NFDARRGPP-DILVLHYTGMETAEEAIARLRDSEAKV-SAHYVVDED-------GSILRL 61
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP+ RAWHAG G W+ + ++N+ SIGI +VN G Y PF E QI + L
Sbjct: 62 VPEERRAWHAGRGAWQGETDVNAASIGIEIVNPG------HEFGYRPFPEPQIEAVIALV 115
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
DI +++ I ++ H+D+AP K DPG LFPW +L + G G W P + A+
Sbjct: 116 GDIRTRWSIPDARIIAHSDLAPERKQDPGELFPWKRLA-EAGHGLWFDPAPERIGALGAP 174
Query: 205 FKPARPYPRKLDRGIFLELLKA----YGYNVTI-----TNKRSVIRAFKTHFSANQNPER 255
P D G+ + +L++ GY V R + AF+ H+ P+R
Sbjct: 175 LSPG-------DEGLGVIVLRSGLHRLGYGVQPGGAYDEETRLTVEAFQRHW----RPDR 223
Query: 256 I 256
+
Sbjct: 224 V 224
>gi|398821129|ref|ZP_10579614.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
YR681]
gi|398228192|gb|EJN14329.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
YR681]
Length = 260
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 111/239 (46%), Gaps = 46/239 (19%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH + G ++LHYT A + TA T S+HYV+ E
Sbjct: 19 NHGERNKGRQPDMIVLHYTGMPDVEGALARLCTAGTEV------SAHYVVLED------- 65
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI +VN G Y F QI
Sbjct: 66 GRIVQCVPEARRAWHAGVSSWAGEDDINSCSIGIEIVNRG------HDWGYPEFPLRQIA 119
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L + I+ + K+ P VLGH+D+AP K DPG FPW L + G+G W++P
Sbjct: 120 AVIALCRGIMLRRKVAPHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTP----- 173
Query: 199 EAIVRKFKPARPYPRKL----DRGIFL-ELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F R L D + L + L YGY V ++ K V+ AF+ HF
Sbjct: 174 ------FPVVRGESLMLGTISDEVLSLQQALARYGYGVPLSGKYDAATMEVVTAFQRHF 226
>gi|146278260|ref|YP_001168419.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sphaeroides ATCC
17025]
gi|145556501|gb|ABP71114.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
sphaeroides ATCC 17025]
Length = 219
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH RDG +++HYT + A A + A + S+H++ISE G+
Sbjct: 6 NHGPRRDGARPDLVVIHYTAMSSAEAACARLCDPAAEV-SAHWLISEP-------GECRA 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG G W ++NS SIGI L N G PF E Q+ L L
Sbjct: 58 LVPEERRAWHAGAGAWGAVTDVNSRSIGIELANPG----------DRPFPEPQMAALERL 107
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
I+ ++ I P+ V+ H+D+APG K+DPGP F W +L G+ W P
Sbjct: 108 LAGILDRWSIPPERVIAHSDMAPGRKIDPGPRFDWRRLA-RAGLSVWPEP 156
>gi|33593433|ref|NP_881077.1| hydrolase [Bordetella pertussis Tohama I]
gi|384204728|ref|YP_005590467.1| putative exported hydrolase [Bordetella pertussis CS]
gi|408416471|ref|YP_006627178.1| hydrolase [Bordetella pertussis 18323]
gi|33572789|emb|CAE42721.1| putative exported hydrolase [Bordetella pertussis Tohama I]
gi|332382842|gb|AEE67689.1| putative exported hydrolase [Bordetella pertussis CS]
gi|401778641|emb|CCJ64081.1| putative exported hydrolase [Bordetella pertussis 18323]
Length = 275
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P +V ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRVYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGG-VVGE---------KFRSTNYYPFDENQIHTLGLL 143
A I W +NS SIGI LVN G GE S ++ P+ + QI TL +L
Sbjct: 93 ASISAWYDQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWQRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLQ-TEGVP---DIAWFQGQLARLGYATPQSGVLDTATRNVLAAFQMHY 254
>gi|259416879|ref|ZP_05740799.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Silicibacter sp. TrichCH4B]
gi|259348318|gb|EEW60095.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Silicibacter sp. TrichCH4B]
Length = 219
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 18/168 (10%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEG 73
D P W + N+ R+G+ ++LHYT A + A+ + S+HY+I
Sbjct: 3 DVSPIWHPSPNYGPRREGLRPHLIVLHYTAMQSADAALTRLCDPAYEV-SAHYLIGGD-- 59
Query: 74 KYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFD 133
G++ Q+V ++ RAWHAG G+W +++NS SIGI L N G +PF
Sbjct: 60 -----GRLWQMVEEDQRAWHAGAGEWAGQQDINSRSIGIELDNRGD----------HPFS 104
Query: 134 ENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
E Q+H L L I++++ I P+ V+GH+D+APG K DPGP F W +L
Sbjct: 105 EPQMHRLETLLPHIMTRWNIAPEGVIGHSDLAPGRKWDPGPRFDWQRL 152
>gi|395794449|ref|ZP_10473773.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. Ag1]
gi|421138515|ref|ZP_15598577.1| hypothetical protein MHB_04571 [Pseudomonas fluorescens BBc6R8]
gi|395341395|gb|EJF73212.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. Ag1]
gi|404510301|gb|EKA24209.1| hypothetical protein MHB_04571 [Pseudomonas fluorescens BBc6R8]
Length = 257
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG--- 79
N ++ R+G +V+ +I+HYT FA + A T + S+HY++++ + Y G
Sbjct: 11 NDFNERNGQAVRQVIVHYTAAPFASSLRALT----RDGFSAHYLLADPHDASYRAAGYDE 66
Query: 80 -KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
+V ++V + RAWHAG W NLNS SIGI +VN + + + QI
Sbjct: 67 LRVFRLVDEAQRAWHAGTSHWAGRDNLNSRSIGIEIVNQA--RDDAGVLTFPAYGAEQID 124
Query: 139 TLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L +DI ++ I P +LGH+DIA K DPGP PW L+ + G+GAW +E+
Sbjct: 125 VLIALIRDIQVRYPAIGPTDILGHSDIAYWRKSDPGPRLPWRCLF-EAGVGAWY--EEVA 181
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK---RSVIRAFKTHFSANQNPE 254
A R+F P +++R + YGY N+ + +RAF+ HF +
Sbjct: 182 KMAYQRRFDIGLPPEVEVERA-----FQRYGY-APAKNRLGFQQRVRAFQMHFRPSDYSG 235
Query: 255 RIYADITT 262
R+ A
Sbjct: 236 RLDAQTCA 243
>gi|393766016|ref|ZP_10354573.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium sp. GXF4]
gi|392728389|gb|EIZ85697.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium sp. GXF4]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + R G LILHYT A + + S+HY++ E G ++Q
Sbjct: 18 NHGERR-GQRPDMLILHYTGMASGAAALARLRDPLSEV-SAHYLVFED-------GGIVQ 68
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG G W+ +LNS SIGI +V+ G G P+ + Q+ + L
Sbjct: 69 MVPEARRAWHAGQGAWKGVSDLNSCSIGIEIVHPGHAG------GLPPYPDAQVAAVIAL 122
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI+ ++ I P+ VL H+D+AP K DPG FPW +L G+G + P A +R
Sbjct: 123 SRDILERWPIPPERVLAHSDVAPERKEDPGETFPWERLAA-AGVGHIVPP------AGLR 175
Query: 204 KFKPARPYPRKLDRGIFLELLKA----YGYNVTITN-----KRSVIRAFKTHF 247
+ + + D G +E L+A YGY++++T +V+ AF+ HF
Sbjct: 176 DGR----FFAQGDAGQPVEALQAMFALYGYDLSVTGTFDARTHAVVTAFQRHF 224
>gi|158426173|ref|YP_001527465.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS
571]
gi|158333062|dbj|BAF90547.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS
571]
Length = 274
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + R ++ L+LHYT A + + S HYV+ E G ++Q
Sbjct: 23 NHGERR--AAIDMLVLHYTGMQSAQAAIDLLRSATAEV-SCHYVVLED-------GGIVQ 72
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG+ W + NS SIGI +VN G Y F + Q+ ++ L
Sbjct: 73 MVPEARRAWHAGVSSWEGQPDTNSRSIGIEIVNPG------HGQGYPDFPDRQMRSVAAL 126
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
++IV + I+ VL H+D+APG K DPG FPW L+ G+G ++ +
Sbjct: 127 CREIVERHVIRADRVLAHSDVAPGRKQDPGEKFPWEFLH-HAGVGHYVHEAPKGGGRFLM 185
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQ 251
+P +L YGY + +T R V+ AF+ HF +Q
Sbjct: 186 MGDSGQPI------AALQAMLALYGYGIEVTGLYDEATRDVVMAFQRHFRRSQ 232
>gi|452965004|gb|EME70034.1| negative regulator of beta-lactamase expression [Magnetospirillum
sp. SO-1]
Length = 226
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
G + L+LHYT A + A + S+HYV+ E G V +VP+ MR
Sbjct: 17 GTVIDTLVLHYTGMESGEAALARLCD-AESKVSAHYVVEED-------GSVFALVPEEMR 68
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR ++NS SIGI LVN G Y F QI L L ++I+ +
Sbjct: 69 AWHAGASSWRGAADVNSRSIGIELVNPG------HEFGYRAFPGAQIEALIRLCREILER 122
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
I + V+GH+D+AP K DPG LFPW +L + IG W + +
Sbjct: 123 HPIPARNVVGHSDVAPTRKQDPGELFPWAELAERHLIGLWPCGEPTALPP---------- 172
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ L L GY+ I + ++ + AF+ HF
Sbjct: 173 ------EHVLLAGLAHVGYD--IHDPKAALAAFQRHF 201
>gi|126739249|ref|ZP_01754943.1| N-acetylmuramoyl-L-alanine amidase, putative [Roseobacter sp.
SK209-2-6]
gi|126719866|gb|EBA16574.1| N-acetylmuramoyl-L-alanine amidase, putative [Roseobacter sp.
SK209-2-6]
Length = 240
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N + R+G+ ++LHYT + A + + S+HY+I
Sbjct: 15 PVWHPSPNFTERRNGLQPHLVVLHYTAMSSAEAALQRLCDAEAEV-SAHYLIGRD----- 68
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G + Q+V + RAWHAG G+WR ++NS SIGI L N G +PF E Q
Sbjct: 69 --GTLWQMVAEMARAWHAGAGEWRGLDDINSRSIGIELDNAG----------DHPFSEPQ 116
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ L L I+ ++ I P+ V+GH+D+APG K+DPGP F W +L
Sbjct: 117 VSCLEALLGQILKRWAIPPEAVIGHSDMAPGRKIDPGPRFDWARL 161
>gi|431806117|ref|YP_007233018.1| N-acetylmuramoyl-L-alanine amidase [Liberibacter crescens BT-1]
gi|430800092|gb|AGA64763.1| N-acetylmuramoyl-L-alanine amidase [Liberibacter crescens BT-1]
Length = 281
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 128/263 (48%), Gaps = 29/263 (11%)
Query: 26 YDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG--- 79
Y S G S V+YL+LH T NF + N S+HY++ + + YL G
Sbjct: 24 YRSIKGFSSRVRYLVLHCTQENFLDSVQILGQN---GQLSAHYLVPDPSDPTYLSEGFRN 80
Query: 80 -KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV-GEKFRSTNYYPFDENQI 137
+ +V + RA+HAG W NLN SIG+ +VN + G+++ T P+ Q
Sbjct: 81 IVIFNLVDEKDRAFHAGASGWEERTNLNDTSIGVEIVNRVTIEGDEYHFT---PYPLEQR 137
Query: 138 HTLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
+ L + I+ ++ I P +VL H+DIA K DPGPLFPW +LY + G+GAW D+
Sbjct: 138 KAVIQLARSIIQRYPYITPTHVLAHSDIAYTRKNDPGPLFPWKELY-EAGVGAWY--DDQ 194
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRS----VIRAFKTHFSANQN 252
TV + K K+ + + + YGY V T S +++AF+ HF
Sbjct: 195 TVADFKEQIKAGTV---KISKEALVPKFRKYGYAVEFTIDDSAYQQLVKAFQMHF----R 247
Query: 253 PERIYADITTEDMFWAWALVAKY 275
PE+ + +E +AL KY
Sbjct: 248 PEKYDGVMDSETAAILYALNHKY 270
>gi|402848184|ref|ZP_10896449.1| N-acetylmuramoyl-L-alanine amidase [Rhodovulum sp. PH10]
gi|402501510|gb|EJW13157.1| N-acetylmuramoyl-L-alanine amidase [Rhodovulum sp. PH10]
Length = 268
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 27 DSRDGMSV-KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+ R G+S L+LHYT A + A + SSH+++ E G V+Q+V
Sbjct: 24 EPRVGVSAPDILLLHYTGMADTDEALARLCDPAAKV-SSHHLVRED-------GTVLQLV 75
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
P+++RAWHAG+ W ++NS SIGI + N G PF E QI + L
Sbjct: 76 PEHLRAWHAGLSSWEGVADVNSRSIGIEIANPG------HDFGCPPFPERQIAAVIALCA 129
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKF 205
DI +++I+P VL H+D+AP K DPG FPW L + G+G W++ +
Sbjct: 130 DICRRWRIRPDRVLAHSDVAPTRKRDPGETFPWESLARE-GVGLWVASAPLDTPGAALSP 188
Query: 206 KPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YA 258
A L R L A+GY V T + +V+ A + HF P R+ A
Sbjct: 189 GDAGDAVLALQRD-----LAAFGYGVAPTGRYDDLTVAVVTALQRHF----RPARVDGVA 239
Query: 259 DITTEDMF 266
D +T
Sbjct: 240 DASTRQTL 247
>gi|418297275|ref|ZP_12909117.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538373|gb|EHH07620.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 259
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 108/243 (44%), Gaps = 32/243 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + ++LHYT A ++ N + SSHY +
Sbjct: 14 GATVAPSP------NHGERLGVAGPDIILLHYTGMTTADGALSWLCNPESQV-SSHYFVF 66
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP+ RAWHAG W D ++NS SIGI + N G G
Sbjct: 67 ED-------GRVIQLVPETRRAWHAGKSTWTGDEDINSRSIGIEIANQGHPG------GL 113
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F + QI + L +D ++ I P+ VL H+D+AP K+DPG FPW + G+G
Sbjct: 114 PEFPKKQIEAVIELCRDCGQRWNIAPERVLAHSDVAPIRKVDPGEKFPW-DILSQQGVGH 172
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY V IT + AF+
Sbjct: 173 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGVEITGAYCEKTEGAVAAFQ 226
Query: 245 THF 247
HF
Sbjct: 227 RHF 229
>gi|56697803|ref|YP_168174.1| N-acetylmuramoyl-L-alanine amidase [Ruegeria pomeroyi DSS-3]
gi|56679540|gb|AAV96206.1| N-acetylmuramoyl-L-alanine amidase, putative [Ruegeria pomeroyi
DSS-3]
Length = 224
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG++ ++LHYT + A + + S+HY+I
Sbjct: 3 PHWHPSPNFGPRRDGLTPSLVVLHYTAMDSAKAALERLCDPEAEV-SAHYLIGAD----- 56
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G + Q+V + RAWHAG+G+WR ++NS SIGI L N G +PF Q
Sbjct: 57 --GTLWQMVDEADRAWHAGVGEWRGRDDINSRSIGIELDNRG----------DHPFSAPQ 104
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ TL L DI+ ++ I P V+GH+D+APG K DPGP F W +L
Sbjct: 105 MTTLDGLLADILRRWAIPPAGVIGHSDMAPGRKCDPGPRFDWARL 149
>gi|91977869|ref|YP_570528.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
BisB5]
gi|91684325|gb|ABE40627.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodopseudomonas
palustris BisB5]
Length = 288
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 32/226 (14%)
Query: 37 LILHYTVYNFAHIITAFTS-NRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + A T +A S+HYV+ E G+++Q VP++ RAWHAG
Sbjct: 59 IVLHYT--GMPDVEGALTRLCKAGTEVSAHYVVLED-------GRILQCVPESKRAWHAG 109
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ KW + ++NS SIGI ++N G Y + QI + L + I+ + + P
Sbjct: 110 VAKWAGEDDINSCSIGIEIINRG------HDWGYPDYPLRQIAAVITLCRGIIIRRNVPP 163
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
VLGH+D+AP K DPG FPW L G+G W+ P + A R
Sbjct: 164 HRVLGHSDVAPSRKKDPGEKFPWRSLAAS-GVGHWVEPAPIEAGAGFRLGAEGEQI---- 218
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI 256
+ + L YGY ++ T K V+ AF+ HF PE++
Sbjct: 219 --RVMQQALADYGYGISATGKYDPATVEVVSAFQRHF----RPEKV 258
>gi|374704523|ref|ZP_09711393.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. S9]
Length = 258
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 22 NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKV 81
++++ + G V+Y++LHYT N + FT+ SSHY+I +
Sbjct: 23 DKSYTATGQGSRVQYVVLHYTSTNLPRSLELFTTTDV----SSHYLIDSNPAT------I 72
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
Q+V +N RAWHAG+ W+ LNS +IGI +VN G + + P+ E QI L
Sbjct: 73 YQLVDENRRAWHAGVSSWKGRTWLNSTTIGIEMVNKGYT-DTPSGQVWQPYTEAQIQALI 131
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
L KDI + + ++GH+D+AP K+DPGP FPW +L D G+ W +E+
Sbjct: 132 SLLKDIAKRPALPLGSIIGHSDVAPQRKVDPGPYFPWKRL-ADEGLVPWPDANEV 185
>gi|146342507|ref|YP_001207555.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. ORS 278]
gi|146195313|emb|CAL79338.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. ORS
278]
Length = 283
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 123/279 (44%), Gaps = 43/279 (15%)
Query: 1 MPSSIHGMPGYVIDPFPEWE--KNRNHYDSRDGMSVKYLILHYTVYNFAH-----IITAF 53
MP + +P + D + + N + + G +ILHYT A + TA
Sbjct: 18 MPKGVSDLPMFTPDSSIASDVIPSANFGERKGGRQPDMIILHYTGMPDAEGAINKLCTAG 77
Query: 54 TSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIH 113
T S+HY++ E G+++Q VP+ +RAWHAG+ W + ++NS SIGI
Sbjct: 78 TEV------SAHYIVLED-------GRIVQCVPEALRAWHAGLSSWGGEEDINSCSIGIE 124
Query: 114 LVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPG 173
+VN G Y F QI + L + I+ + + VLGH+D+AP K DPG
Sbjct: 125 IVNRG------HDWGYPDFPPRQIAAVIALCRGIMLRRNVPAHRVLGHSDVAPSRKKDPG 178
Query: 174 PLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI 233
FPW L + G+G W+ P +T ++ D + L YGY V I
Sbjct: 179 EKFPWHSLA-NSGVGHWVQPAAITKGETLKLGSIGD------DVKGLQKALAKYGYGVPI 231
Query: 234 TNK-----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
T K V+ AF+ HF PER+ I W
Sbjct: 232 TGKFDGLTMEVVTAFQRHF----RPERVDG-IADRSTLW 265
>gi|23016328|ref|ZP_00056085.1| COG3023: Negative regulator of beta-lactamase expression
[Magnetospirillum magnetotacticum MS-1]
Length = 226
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 99/217 (45%), Gaps = 32/217 (14%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
G + L+LHYT A + A S+HYVI E G+V +VP+ MR
Sbjct: 17 GAVIDTLVLHYTGMETGEAALARLCD-AQAKVSAHYVIEED-------GRVFVLVPEEMR 68
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR ++NS SIGI LVN G Y F Q+ L L + I+ +
Sbjct: 69 AWHAGASSWRGVADVNSRSIGIELVNPG------HEFGYRGFPGAQMEALIRLCRGILER 122
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARP 210
I + V+ H+D+AP K DPG LFPW L +GIG W P
Sbjct: 123 HPISARNVVAHSDVAPTRKQDPGELFPWQDLAEGHGIGLWPC---------------GEP 167
Query: 211 YPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
P D + L L GY+ I + ++ + AF+ HF
Sbjct: 168 TPLPPDH-VLLAGLAHVGYD--IHDPKAALTAFQRHF 201
>gi|402772840|ref|YP_006592377.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocystis sp. SC2]
gi|401774860|emb|CCJ07726.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylocystis sp. SC2]
Length = 456
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 103/219 (47%), Gaps = 27/219 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ L+LHYT A A + + S+HYV++E G ++Q+VP++ RAWH
Sbjct: 232 ISSLVLHYTGMPTAESALALLCDPRSEV-SAHYVVNED-------GSILQLVPESRRAWH 283
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + ++NS SIGI +V+ G + P+ QI L KDI + I
Sbjct: 284 AGKSFWAGETDMNSASIGIEVVHPG-------HEDPRPYPAAQIEATAALAKDICRRQAI 336
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ VL H+DIAPG K DPG FPW +L +G+G + + + A A
Sbjct: 337 PPERVLAHSDIAPGRKRDPGEFFPWKELA-RHGVGRVVD-ERIGAGATTVSLGDAGAKVA 394
Query: 214 KLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
L R L AYGY V T + AF+ HF
Sbjct: 395 SLQRD-----LAAYGYRVEQTGVYDAQTVQAVEAFQRHF 428
>gi|395760536|ref|ZP_10441205.1| N-acetylmuramoyl-L-alanine amidase [Janthinobacterium lividum PAMC
25724]
Length = 266
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
VK++++HYTV N I T + SSHY++++ + K +V ++ +A H
Sbjct: 36 VKFIVIHYTVSNLPRSIKILT----EQVVSSHYLLTDTDKP-----KFYVLVDESRQANH 86
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ LN SIGI +VN G + +YPF + QI L L KDI +++ I
Sbjct: 87 AGVSNWKTYTQLNVSSIGIEIVNPGY-KDTPEGRVWYPFPQAQIDELIPLLKDIQARYNI 145
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ +LGH +IAP K DPGPLFPW +L D G+ W PD V A F+ P
Sbjct: 146 APENILGHNEIAPQRKQDPGPLFPWRQL-ADAGLIVW--PDANRVAAQRLIFEQQLP--- 199
Query: 214 KLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHF 247
D F + L +GY T R+V+ AF+ +
Sbjct: 200 --DAVWFQKKLAQHGYATPNTGIFDEATRNVLIAFQMKY 236
>gi|367476930|ref|ZP_09476297.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. ORS
285]
gi|365270817|emb|CCD88765.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. ORS
285]
Length = 283
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 116/250 (46%), Gaps = 33/250 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
N + + G +ILHYT + + IT + A S+HY++ E G+++
Sbjct: 43 NFGERKGGRQPDMVILHYTGMPDVEGAITKLCT--AGTEVSAHYIVLED-------GRIV 93
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ +RAWHAG+ W + ++NS SIGI +VN G Y F QI +
Sbjct: 94 QCVPEALRAWHAGLSSWGGEEDINSCSIGIEIVNRG------HDWGYPDFPPRQIAAVIA 147
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L + I+ + + VLGH+D+AP K DPG FPW L + G+G W+ P A +
Sbjct: 148 LCRGIMLRRNVPAHRVLGHSDVAPSRKKDPGEKFPWHSLA-NSGVGHWVQP------AAI 200
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIY 257
K + + D + L YGY V IT K V+ AF+ HF PE++
Sbjct: 201 TKGETLKLGSIGDDVKGLQKALARYGYGVPITGKFDGLTMEVVTAFQRHF----RPEKVD 256
Query: 258 ADITTEDMFW 267
I W
Sbjct: 257 G-IADRSTLW 265
>gi|456353510|dbj|BAM87955.1| N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan
binding domain [Agromonas oligotrophica S58]
Length = 283
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 33/250 (13%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
N + + G +ILHYT + + IT + A S+HY++ E G+++
Sbjct: 43 NFGERKGGRQPDMVILHYTGMPDVDGAITKLCT--AGTEVSAHYIVLED-------GRIV 93
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
Q VP+ +RAWHAG+ W + ++NS SIGI +VN G Y F QI +
Sbjct: 94 QCVPEALRAWHAGLSSWGGEEDINSCSIGIEIVNRG------HDWGYPDFPPRQIAAVIA 147
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L + I+ + + VLGH+D+AP K DPG FPW L + G+G W+ P +T +
Sbjct: 148 LCRGIMLRRNVPAHRVLGHSDVAPSRKKDPGEKFPWHSLA-NSGVGHWVQPAAITKGETL 206
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERIY 257
+ D + L YGY V IT K V+ AF+ HF PE+I
Sbjct: 207 KLGSIGD------DVKGLQKALARYGYGVPITGKFDGLTMEVVTAFQRHF----RPEKID 256
Query: 258 ADITTEDMFW 267
I W
Sbjct: 257 G-IADRSTLW 265
>gi|15889395|ref|NP_355076.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium fabrum str. C58]
gi|15157247|gb|AAK87861.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium fabrum str. C58]
Length = 259
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 109/243 (44%), Gaps = 32/243 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + ++LHYT A ++ N + SSHY +
Sbjct: 14 GAAVAPSP------NHGERLGVAGPDIILLHYTGMTTADGALSWLRNPESQV-SSHYFVF 66
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP++ RAWHAG W D ++NS SIGI + N G G
Sbjct: 67 ED-------GRVIQLVPESRRAWHAGKSSWAGDEDINSRSIGIEIANQGHPG------GL 113
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F E Q+ + L +D ++ I P+ VL H+D+AP K+DPG FPW + +G+G
Sbjct: 114 PEFPEAQVAAVIELCRDCGRRWSIAPERVLAHSDVAPIRKVDPGEKFPW-DILSQHGVGH 172
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY IT + AF+
Sbjct: 173 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGAEITGAYCEKTEGAVAAFQ 226
Query: 245 THF 247
HF
Sbjct: 227 RHF 229
>gi|427428866|ref|ZP_18918904.1| N-acetylmuramoyl-L-alanine amidase [Caenispirillum salinarum AK4]
gi|425881293|gb|EKV29982.1| N-acetylmuramoyl-L-alanine amidase [Caenispirillum salinarum AK4]
Length = 247
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 107/232 (46%), Gaps = 32/232 (13%)
Query: 21 KNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK 80
++ NH V L+LHYT A + A ++ S+HY+I E G
Sbjct: 9 RSPNHGPREKTQPVDMLVLHYTGMKSAQEALQRLCDEASSV-SAHYLIEED-------GT 60
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
V +VP+N RAWHAG+ WR ++NS SIGI LVN G Y PF E Q+ L
Sbjct: 61 VHALVPENRRAWHAGVSSWRGRTDVNSRSIGIELVNPG------HEFGYRPFPEPQMTAL 114
Query: 141 GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
L + ++++ I + V+GH D+AP K DPG LF W +L + GIG W + VEA
Sbjct: 115 IALCQAVLARHPIPARNVVGHADVAPLRKEDPGELFDWKRLAAE-GIGLWPA----DVEA 169
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+ P+ E L A GY + + AF+ HF
Sbjct: 170 FPTEQPPS--------IAAVQEELTAIGYAAPRSGALDEATAKALTAFQRHF 213
>gi|85707643|ref|ZP_01038709.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter sp. NAP1]
gi|85689177|gb|EAQ29180.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter sp. NAP1]
Length = 254
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 112/232 (48%), Gaps = 45/232 (19%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ + L+LHYT ++ + S+HY+I+E+ G+VIQ+V + RA
Sbjct: 36 LPINMLVLHYTEMKPVETALEKLTDPEAGV-SAHYLITEE-------GEVIQLVSEEKRA 87
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG WR +++NS SIGI L + G E + Y F E Q L L IV Q+
Sbjct: 88 WHAGASYWRGIKDVNSASIGIELDHPGHTEE---NGGYRGFSEAQFEALVPLVARIVKQY 144
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+GH+D+AP K+DPG LFPW +L +YG+ P
Sbjct: 145 DIPRANVVGHSDVAPIRKIDPGELFPWDRL-AEYGL--------------------CLPT 183
Query: 212 PRKLDR-------GIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERI 256
P K++R G F+ L+ +GY+ IT R I AF+ + PERI
Sbjct: 184 PAKIERADPFHNAGAFILALERFGYD--ITEGRKAIEAFERRW----RPERI 229
>gi|254420236|ref|ZP_05033960.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas
sp. BAL3]
gi|196186413|gb|EDX81389.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas
sp. BAL3]
Length = 253
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 35/229 (15%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
L+LHYT A + + S+HY++ E G++ Q+VP+ RAWHAG
Sbjct: 22 LVLHYTGMETGEAALARLRDPEAKV-SAHYLVEED-------GRIFQLVPEERRAWHAGA 73
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G WR + + N+ SIGI +VN G +F Y F E QI + L DI ++ I
Sbjct: 74 GGWRGEDDCNAASIGIEIVN---PGHEF---GYRLFPEAQIAAVIALIGDIRDRWTIPDN 127
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
++ H+D+AP K DPG LFPW +L + G G W P ++A+ + K D
Sbjct: 128 RIIAHSDLAPARKTDPGELFPWKRLA-EAGHGLWFEPAADRIKALGGLLQ-------KGD 179
Query: 217 RGIFLELLKA----YGYNVT-----ITNKRSVIRAFKTHFSANQNPERI 256
+GI +L+A GY +T + +RAF+ H+ P+RI
Sbjct: 180 QGIGAVVLRAGLHRLGYGLTPGGDYDAETETTVRAFQRHW----RPDRI 224
>gi|427410352|ref|ZP_18900554.1| hypothetical protein HMPREF9718_03028 [Sphingobium yanoikuyae ATCC
51230]
gi|425712485|gb|EKU75500.1| hypothetical protein HMPREF9718_03028 [Sphingobium yanoikuyae ATCC
51230]
Length = 232
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 114/239 (47%), Gaps = 46/239 (19%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY 75
P E +YD R + + L+LHYT A + +N A + S+HYV++E
Sbjct: 4 IPMIETPSPNYDER-SLPITMLVLHYTGMPDAASAINWLAN-AESKVSAHYVVTED---- 57
Query: 76 LPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
G++I++V ++ RAWHAG WR ++NS SIGI +VN G Y PF E
Sbjct: 58 ---GQIIRMVAEDKRAWHAGRSHWRGIDDVNSASIGIEIVNPG------HEWGYRPFPEA 108
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
Q+ +L L DIV + +I ++GH+DIAP K DPG LFPWG+L
Sbjct: 109 QMGSLIPLVHDIVQRHRITRGNIVGHSDIAPARKQDPGELFPWGQLA------------- 155
Query: 196 MTVEAIVRKFKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ + A P P K D G F+ L+ +GY+ I + AF+ F
Sbjct: 156 --------RLRLALPRPTKNLMDPHWTDSG-FMLALERFGYD--IAEPEPAVVAFQRRF 203
>gi|335033313|ref|ZP_08526681.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium sp. ATCC 31749]
gi|333795251|gb|EGL66580.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium sp. ATCC 31749]
Length = 259
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 109/243 (44%), Gaps = 32/243 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G + P P NH + ++LHYT A ++ N + SSHY +
Sbjct: 14 GAAVAPSP------NHGERLGVAGPDIILLHYTGMTTADGALSWLRNPESQV-SSHYFVF 66
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+VIQ+VP++ RAWHAG W D ++NS SIGI + N G G
Sbjct: 67 ED-------GRVIQLVPESRRAWHAGKSSWAGDEDINSRSIGIEIANQGHPG------GL 113
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F E Q+ + L +D ++ I P+ VL H+D+AP K+DPG FPW + +G+G
Sbjct: 114 PEFPEAQVAAVIELCRDCGRRWSIAPERVLAHSDVAPIRKVDPGEKFPW-DILSQHGVGH 172
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY IT + AF+
Sbjct: 173 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGAEITGAYCEKTEGAVAAFQ 226
Query: 245 THF 247
HF
Sbjct: 227 RHF 229
>gi|421482802|ref|ZP_15930382.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter piechaudii
HLE]
gi|400199113|gb|EJO32069.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter piechaudii
HLE]
Length = 261
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + A + + + S+HY+I++ G+ ++V +N AWH
Sbjct: 40 VRSVVLHYTSVDDATSMRLLSQGKV----SAHYLIND-------AGRAYRLVDENRAAWH 88
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + +NS SIGI +VN G ++P++E Q+ L +L +DI+ + I
Sbjct: 89 AGASSWYGNIAMNSTSIGIEVVNPGWTDGPDGKPLWHPYNERQLRALTILLRDIIQRHGI 148
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
P+ V+GH+DIAP K+DPGPLFPW K GIG W
Sbjct: 149 APENVVGHSDIAPQRKVDPGPLFPW-KALAAAGIGRW 184
>gi|381200331|ref|ZP_09907471.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium yanoikuyae XLDN2-5]
Length = 232
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 114/239 (47%), Gaps = 46/239 (19%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY 75
P E +YD R + + L+LHYT A + +N A + S+HYV++E
Sbjct: 4 IPMIETPSPNYDER-SLPITMLVLHYTGMPDAASAINWLAN-AESKVSAHYVVTED---- 57
Query: 76 LPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
G++I++V ++ RAWHAG WR ++NS SIGI +VN G Y PF E
Sbjct: 58 ---GQIIRMVAEDKRAWHAGRSHWRGIDDVNSASIGIEIVNPG------HEWGYRPFPEA 108
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
Q+ +L L DIV + +I ++GH+DIAP K DPG LFPWG+L
Sbjct: 109 QMGSLIPLVHDIVQRHRITRGNIVGHSDIAPARKQDPGELFPWGQLA------------- 155
Query: 196 MTVEAIVRKFKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ + A P P K D G F+ L+ +GY+ I + AF+ F
Sbjct: 156 --------RLRLALPRPTKNLMDPHWTDSG-FMLALERFGYD--IAEPEPAVVAFQRRF 203
>gi|412341927|ref|YP_006970682.1| hydrolase [Bordetella bronchiseptica 253]
gi|408771761|emb|CCJ56565.1| putative exported hydrolase [Bordetella bronchiseptica 253]
Length = 275
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + + + + S+HY+I++ P + ++V + AWH
Sbjct: 42 VRAVVLHYTSTGNENSLKILSERKV----SAHYLITDT-----PRPRAYRLVDETRAAWH 92
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVV---GEKFR-------STNYYPFDENQIHTLGLL 143
AGI W +NS SIGI LVN G GE R S ++ P+ + QI L +L
Sbjct: 93 AGISAWYGQSAMNSTSIGIELVNPGWTNGEGEWTRGGHGDADSRHWAPYPDAQIEALIVL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DIV++ I P+ ++GH+DIAP K+DPGPLFPW +L G+G W DE A +
Sbjct: 153 LRDIVARHGIAPENIVGHSDIAPQRKVDPGPLFPWRRLA-QAGLGRWY--DEAGAAAHLA 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGY-----NVTITNKRSVIRAFKTHF 247
+ + P D F L GY V T R+V+ AF+ H+
Sbjct: 210 RLR-IEGVP---DIAWFQGQLARLGYAAPQSGVLDTATRNVLAAFQMHY 254
>gi|383769975|ref|YP_005449038.1| amidase [Bradyrhizobium sp. S23321]
gi|381358096|dbj|BAL74926.1| amidase [Bradyrhizobium sp. S23321]
Length = 260
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH + G ++LHYT A + TA T S+HYV+ E
Sbjct: 19 NHGERNKGRQADMIVLHYTGMPDVEGALARLCTAGTEV------SAHYVVLED------- 65
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI +VN G Y F QI
Sbjct: 66 GRIVQCVPEARRAWHAGVSSWAGEDDINSCSIGIEIVNRG------HDWGYPEFPLRQIA 119
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P
Sbjct: 120 AVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTP----- 173
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
A V + + + + L YGY V +T K V+ AF+ HF
Sbjct: 174 -APVVRGESLMLGTISDEVLSLQQALARYGYGVPLTGKYDAATMEVVTAFQRHF 226
>gi|338975621|ref|ZP_08630971.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231131|gb|EGP06271.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 258
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 125/266 (46%), Gaps = 38/266 (14%)
Query: 8 MPGYVIDP--FPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSS 64
MP +V D + N+ D + +S ++LHYT + + A I + S+
Sbjct: 1 MPNFVPDSSVVSNVTPSPNYGDRKGVLSPNMIVLHYTGMADPASAIVRLCTTGTEV--SA 58
Query: 65 HYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF 124
HYV+ E G +IQ V + RAWHAG W D ++NS+SIGI +VN G
Sbjct: 59 HYVVLED-------GNIIQCVREADRAWHAGASSWAGDTDINSLSIGIEIVNPG------ 105
Query: 125 RSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
+Y F Q + L K I+ + I VLGH+D+APG K DPG FPW +L D
Sbjct: 106 HDLDYTDFPLRQTAAVIALCKGIMIRRDIPRHRVLGHSDVAPGRKKDPGEKFPW-RLLAD 164
Query: 185 YGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA-YGYNVTITN-----KRS 238
G+G W+ P IVR + + D + L+ L A +GY + +
Sbjct: 165 SGVGLWVEP-----APIVRGVQTM--LGQSGDDVLALQKLFARFGYGIPLNGLYDAATMD 217
Query: 239 VIRAFKTHFSANQNPERI--YADITT 262
V+ AF+ HF PER+ AD +T
Sbjct: 218 VVTAFQRHF----RPERVDGVADTST 239
>gi|357027585|ref|ZP_09089658.1| hypothetical protein MEA186_22516 [Mesorhizobium amorphae
CCNWGS0123]
gi|355540565|gb|EHH09768.1| hypothetical protein MEA186_22516 [Mesorhizobium amorphae
CCNWGS0123]
Length = 255
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 8 MPGYVID-PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHY 66
M G++ D P E + N RD + ++LHYT A+ + A + S+HY
Sbjct: 1 MSGFLPDEPSAEVRVSPNFGPRRDTLKPDMIVLHYTGMATGPGAEAWLCDPASEV-SAHY 59
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
++ E G+V+Q+V ++ RAWHAG W ++NS S+GI +VN G S
Sbjct: 60 LVHED-------GRVVQMVRESDRAWHAGKSSWFGRTDINSCSVGIEIVNPG------HS 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
Y F QI + L IV + I Q VL H+D+APG K+DPG FPW L+ G
Sbjct: 107 LGYPAFPRRQIDAVIGLCAGIVQRHFIPAQRVLAHSDVAPGRKIDPGEKFPWNALFA-AG 165
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT---NKRS--VIR 241
+G + A VR+ + D +L YGY V I+ ++++ V+
Sbjct: 166 VG------HLVPAAPVRRGAVVKAGDTGPDVEALQSMLAVYGYGVEISGVFDRQTGIVVE 219
Query: 242 AFKTHF 247
AF+ HF
Sbjct: 220 AFQRHF 225
>gi|406989719|gb|EKE09463.1| hypothetical protein ACD_16C00165G0002 [uncultured bacterium]
Length = 227
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 34/231 (14%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
H++ R G+ + +ILHYT A A+ ++ ++ S+HY+I EK G + +
Sbjct: 11 HFNDRTGL-IDSIILHYTDMPSADEALAWLTSPKSSV-SAHYLIDEK-------GFIYHL 61
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V D RAWHAG W+ +LN+ S+GI L N G S Y PF E QI TL +
Sbjct: 62 VDDEKRAWHAGTSFWQGCTDLNNRSLGIELANPG------HSYGYQPFPEAQIDTLLRIC 115
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
+ +++ I +LGH+DIAP K DPG LFPW L + G G W
Sbjct: 116 EQQCTRWNIPKTRILGHSDIAPCRKQDPGHLFPWSTLARE-GFGLW-------------- 160
Query: 205 FKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPER 255
P + G + L GY T++ +V RAFK HF +Q +R
Sbjct: 161 --PTSGLSLSKEEGFIEKGLDTIGYE-TVSLPHTV-RAFKRHFQPHQLDDR 207
>gi|387793084|ref|YP_006258149.1| negative regulator of beta-lactamase expression [Solitalea
canadensis DSM 3403]
gi|379655917|gb|AFD08973.1| negative regulator of beta-lactamase expression [Solitalea
canadensis DSM 3403]
Length = 273
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 103/213 (48%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+I+H+T + A + FT R S+HYV+S GKV+ ++ D +RAWHA
Sbjct: 75 YVIIHHTAQDSLAQTLKTFTLTRTQ--VSAHYVVSR-------DGKVVHMLNDYLRAWHA 125
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G KW ++NS SIGI L N G PF + QI++L +L + + + I
Sbjct: 126 GNAKWGNCTDINSNSIGIELDNNG----------KEPFADAQINSLLVLLGKLKTNYNIP 175
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH DIAP K DP FPW KL D G G W + M ++ + FKP
Sbjct: 176 TANFIGHADIAPTRKPDPSEKFPWKKL-ADKGFGLWYT---MPLDTVPTDFKP------- 224
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
LE L+ GY+ N + I AFK HF
Sbjct: 225 ------LEALRIIGYDT--RNGDAAITAFKRHF 249
>gi|83592296|ref|YP_426048.1| AmpD protein [Rhodospirillum rubrum ATCC 11170]
gi|386349008|ref|YP_006047256.1| AmpD protein [Rhodospirillum rubrum F11]
gi|83575210|gb|ABC21761.1| AmpD (negative regulator of AmpC) [Rhodospirillum rubrum ATCC
11170]
gi|346717444|gb|AEO47459.1| AmpD (negative regulator of AmpC) [Rhodospirillum rubrum F11]
Length = 241
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 121/258 (46%), Gaps = 33/258 (12%)
Query: 16 FPEWEKNRNHYDSRD-GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
FP E + D R G + L++HYT A A + + S+H++I E
Sbjct: 10 FPVIEALSPNADDRPPGQIIDMLVIHYTGMPSAQAALARLLDPQAQV-SAHWLIDED--- 65
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G ++V + RAWHAG+ W +N+ SIGI LVN G Y PF E
Sbjct: 66 ----GTAYKLVEERRRAWHAGVSAWGGRPGVNARSIGIELVNPG------HEFGYRPFPE 115
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ TL LG+ I+ + I +V+GH D+AP K DPG LF W +L + GIG W P
Sbjct: 116 AQMTTLIALGRGILERHPIPAAHVVGHADVAPTRKEDPGELFDWQRLASN-GIGRW-PPP 173
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPE 254
+ V RP G LL+ GY+ I++ ++ + AF+ HF P+
Sbjct: 174 PLGV----------RPETVDATEGEAACLLEQIGYD--ISSLQATVLAFQRHF----RPK 217
Query: 255 RIYADITTEDMFWAWALV 272
R+ I +E ++ AL
Sbjct: 218 RLDGRIDSETLWLIKALA 235
>gi|374577257|ref|ZP_09650353.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
WSM471]
gi|374425578|gb|EHR05111.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
WSM471]
Length = 287
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 109/243 (44%), Gaps = 54/243 (22%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH D G ++LHYT A + +A T S+HYV+ E
Sbjct: 46 NHGDRNKGRQPDMIVLHYTGMPDVEGALARLCSAGTEV------SAHYVVLED------- 92
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI +VN G Y F QI
Sbjct: 93 GRIVQCVPEARRAWHAGVSSWSGEDDINSCSIGIEIVNRG------HDWGYPEFPLRQIA 146
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM-- 196
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P +
Sbjct: 147 AVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTPAPVVR 205
Query: 197 -------TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
T+ V + A L YGY V +T K V+ AF+
Sbjct: 206 GESLMLGTISDEVLSLQQA---------------LARYGYGVPLTGKYDAATMEVVTAFQ 250
Query: 245 THF 247
HF
Sbjct: 251 RHF 253
>gi|386400784|ref|ZP_10085562.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
WSM1253]
gi|385741410|gb|EIG61606.1| negative regulator of beta-lactamase expression [Bradyrhizobium sp.
WSM1253]
Length = 260
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH D G ++LHYT A + +A T S+HYV+ E
Sbjct: 19 NHGDRNKGRQPDMIVLHYTGMPDVEGALARLCSAGTEV------SAHYVVLED------- 65
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI +VN G Y F QI
Sbjct: 66 GRIVQCVPEARRAWHAGVSSWSGEDDINSCSIGIEIVNRG------HDWGYPEFPLRQIA 119
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P
Sbjct: 120 AVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTP----- 173
Query: 199 EAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
A V + + + + L YGY V +T K V+ AF+ HF
Sbjct: 174 -APVVRGESLMLGTISDEVLSLQQALARYGYGVPLTGKYDGATMEVVTAFQRHF 226
>gi|330501093|ref|YP_004377962.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mendocina NK-01]
gi|328915379|gb|AEB56210.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas mendocina NK-01]
Length = 260
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 24/229 (10%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
+H + V+Y++LHYT + + T SSHY+I + V +
Sbjct: 25 SHTATGQNSRVQYVVLHYTSADLQRSLELLTQTEV----SSHYLIGDAPPT------VYR 74
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V +N RAWH G+ +W+ LNS +IGI LVN G + + PF QI TL +L
Sbjct: 75 LVDENRRAWHVGVSEWKGRTWLNSTTIGIELVNQGYY-QTPAGRYWQPFAPQQIDTLIVL 133
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDIV + ++ ++ H+D+AP K+DPGPLFPW +L D G+ W P+E V
Sbjct: 134 LKDIVKRHQLPLGSIIAHSDVAPQRKVDPGPLFPWKRL-ADEGLVPW--PNEGAVARQQA 190
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
F + P + F L GY V + R+VI AF+ +
Sbjct: 191 LFSTSLPSVQ-----WFQAQLAQQGYTVPQHGELDEATRNVIAAFQMKY 234
>gi|148261867|ref|YP_001235994.1| N-acetylmuramoyl-L-alanine amidase [Acidiphilium cryptum JF-5]
gi|326405372|ref|YP_004285454.1| putative N-acetylmuramoyl-L-alanine amidase [Acidiphilium
multivorum AIU301]
gi|338989123|ref|ZP_08634000.1| N-acetylmuramoyl-L-alanine amidase [Acidiphilium sp. PM]
gi|146403548|gb|ABQ32075.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Acidiphilium cryptum
JF-5]
gi|325052234|dbj|BAJ82572.1| putative N-acetylmuramoyl-L-alanine amidase [Acidiphilium
multivorum AIU301]
gi|338205944|gb|EGO94203.1| N-acetylmuramoyl-L-alanine amidase [Acidiphilium sp. PM]
Length = 220
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
GM V +L+LHYT A + A + S+HYV+ E G + +VP+ R
Sbjct: 12 GMPVDHLVLHYTGMRSAAAAIERLCDPAAKV-SAHYVVDEAGGLH-------ALVPERDR 63
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAGI WR R LN SIGI +VN G Y PF Q+ + L I+ +
Sbjct: 64 AWHAGISFWRGARGLNDRSIGIEIVNPG------HEWGYVPFPPQQVAAVIELCLGILGR 117
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
I P+ V+GH+DIAP K DPG LFPW +L GIG W
Sbjct: 118 HPIPPRNVVGHSDIAPDRKQDPGELFPWPQLAA-AGIGLW 156
>gi|424910844|ref|ZP_18334221.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392846875|gb|EJA99397.1| negative regulator of beta-lactamase expression [Rhizobium
leguminosarum bv. viciae USDA 2370]
Length = 259
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A ++ N + SSHY + E G++IQ+VP+ RAWHAG
Sbjct: 35 ILLHYTGMTTADGALSWLCNPESQV-SSHYFVFED-------GRIIQLVPETRRAWHAGK 86
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W D ++NS SIGI + N G G F Q+ + L +D ++ I P+
Sbjct: 87 SSWAGDEDINSRSIGIEIANQGHPG------GLPEFPMEQVEAVIELCRDCGQRWHIAPE 140
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D+AP K+DPG FPW + +G+G W+ P + ++ +P
Sbjct: 141 RVLAHSDVAPIRKVDPGEKFPW-DILSQHGVGHWVEPAPIRGGRFFQRGDHGQPVE---- 195
Query: 217 RGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+L YGY V IT + AF+ HF
Sbjct: 196 --ALQSMLSIYGYGVEITGNYCEKTEGAVAAFQRHF 229
>gi|384216516|ref|YP_005607682.1| amidase [Bradyrhizobium japonicum USDA 6]
gi|354955415|dbj|BAL08094.1| amidase [Bradyrhizobium japonicum USDA 6]
Length = 287
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 109/241 (45%), Gaps = 50/241 (20%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH D G ++LHYT A + TA T S+HYV+ E
Sbjct: 46 NHGDRNKGRQPDMIVLHYTGMPDVEGALARLCTAGTEV------SAHYVVLED------- 92
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI ++N G Y + QI
Sbjct: 93 GRIVQCVPEAKRAWHAGVSSWAGEDDINSCSIGIEIINRG------HDWGYPEYPLRQIA 146
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P
Sbjct: 147 AVITLCRGIMLRRKVAAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTP----- 200
Query: 199 EAIVRKFKPARPYPRKLDRGI-------FLELLKAYGYNVTITNK-----RSVIRAFKTH 246
+VR L G + L YGY V +T K V+ AF+ H
Sbjct: 201 APVVRG--------ESLMLGTISDEVLSLQQALARYGYGVPLTGKYDAATMEVVTAFQRH 252
Query: 247 F 247
F
Sbjct: 253 F 253
>gi|395790696|ref|ZP_10470156.1| hypothetical protein MEC_00147 [Bartonella alsatica IBS 382]
gi|395409448|gb|EJF76038.1| hypothetical protein MEC_00147 [Bartonella alsatica IBS 382]
Length = 313
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 135/307 (43%), Gaps = 81/307 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF I A T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTSINFKDSIIALTGSAV----SAHYLVPDPSEKTYVEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV-GEKFRST----------NYYPFDEN-- 135
RAWHAG+ W NLN SIGI +VN + F+ T ++ P D+N
Sbjct: 75 ERAWHAGVSSWAGRSNLNDTSIGIEIVNLATGHTDSFKETYLEAGFKDKHDFNPVDKNES 134
Query: 136 ------------------------------------------QIHTLGLLGKDIVSQF-K 152
QI + L +++ ++
Sbjct: 135 KRFGVHLLSENSDLNDKAVELGSVDLVTYNNDAFTFPPYNPIQIEAVKELALNVLQRYPD 194
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
I P V+GH+DIA G K DPG FPW +LY GIGAW D+ + ++F + P
Sbjct: 195 IMPTDVVGHSDIAIGRKSDPGAAFPWKELY-KAGIGAWY--DDELKDHYQKQF--CKSLP 249
Query: 213 RKLDRGIFLELLKAYGYNVTITN----KRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
K D L LK YGY+V + R +IRAF+ HF +N + + + E
Sbjct: 250 EKAD---VLARLKRYGYDVLAASIESGYRDLIRAFQLHFR-QENYDGV---LDAETAAII 302
Query: 269 WALVAKY 275
+ALV KY
Sbjct: 303 YALVDKY 309
>gi|27381722|ref|NP_773251.1| amidase [Bradyrhizobium japonicum USDA 110]
gi|27354891|dbj|BAC51876.1| amidase [Bradyrhizobium japonicum USDA 110]
Length = 286
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 109/243 (44%), Gaps = 54/243 (22%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH + G ++LHYT A + TA T S+HYV+ E
Sbjct: 46 NHGERSKGRQPDMIVLHYTGMPDVEGALARLCTAGTEV------SAHYVVLED------- 92
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI +VN G Y F QI
Sbjct: 93 GRIVQCVPEARRAWHAGVSSWAGEDDVNSCSIGIEIVNRG------HDWGYPEFPLRQIA 146
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM-- 196
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P +
Sbjct: 147 AVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTPTPVVR 205
Query: 197 -------TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
T+ V + A L YGY V +T K V+ AF+
Sbjct: 206 GESLMLGTISDEVLSLQQA---------------LARYGYGVPLTGKYDAATMEVVTAFQ 250
Query: 245 THF 247
HF
Sbjct: 251 RHF 253
>gi|288958912|ref|YP_003449253.1| N-acetylmuramoyl-L-alanine amidase [Azospirillum sp. B510]
gi|288911220|dbj|BAI72709.1| N-acetylmuramoyl-L-alanine amidase [Azospirillum sp. B510]
Length = 230
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 87/171 (50%), Gaps = 17/171 (9%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH DG V+ LILHYT + AH + A S+HY + E G +
Sbjct: 13 NHGPRADGARVELLILHYTGMPTAAHALERLCDPAAQV--SAHYTVDED-------GTIY 63
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
VP++ RAWHAG WR ++NS SIG+ +VN G +F Y PF Q+ +
Sbjct: 64 AHVPEDRRAWHAGRASWRGLEDVNSRSIGVEIVN---PGHEF---GYRPFPSVQMAAVAE 117
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
L + I+ + I P VLGH+D+AP K DPG LF W L GIG W +P
Sbjct: 118 LCRGILDRHAIAPADVLGHSDVAPARKEDPGELFDWSGLAAQ-GIGLWPTP 167
>gi|254292759|ref|YP_003058782.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hirschia baltica ATCC 49814]
gi|254041290|gb|ACT58085.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Hirschia baltica ATCC 49814]
Length = 236
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 45/249 (18%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ L+LHYT + + ++HY++ E G++ Q+V ++ RAWH
Sbjct: 23 LSMLVLHYTGMQTGQAALGRMCDPEAKV-AAHYMVEED-------GRIFQLVDESKRAWH 74
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+G WR ++NS SIGI +VNGG F E QI + L +D++S+ +I
Sbjct: 75 AGVGTWRGLDDINSRSIGIEIVNGG------HDYGLPDFPEIQIDAVIALCRDVLSRHQI 128
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
++GH+DIAPG K DPG FPW KL GIG W PDE +
Sbjct: 129 LQSDIVGHSDIAPGRKDDPGEKFPWEKLA-HAGIGLW--PDE---------------SKK 170
Query: 214 KLDRGIFLELLK--AYGYNVTITNKR--SVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
L G +ELL YG N + +++ VIRAF+ + + ++T E
Sbjct: 171 ALSVG-SVELLAEIGYGLNASPSDQEITCVIRAFQQRWMQD--------NVTGEPCLETL 221
Query: 270 ALVAKYGSM 278
VA+ S+
Sbjct: 222 CRVAQIASI 230
>gi|410631384|ref|ZP_11342059.1| hypothetical protein GARC_1959 [Glaciecola arctica BSs20135]
gi|410148830|dbj|GAC18926.1| hypothetical protein GARC_1959 [Glaciecola arctica BSs20135]
Length = 830
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 118/263 (44%), Gaps = 36/263 (13%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
+K+L++HYT ++ + A SSHY+I E+ KVIQ+V ++ RA
Sbjct: 51 IKFLVMHYTAIDYQKSVRALVDEGGL---SSHYLIPERNDPSYQDTDLKVIQLVEESGRA 107
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN-------------YYPFDENQIH 138
WHAG W+ +LN SIGI +VN S N + +D QI
Sbjct: 108 WHAGNSYWQGREDLNDQSIGIEIVNVPHCMRDTASMNALKRENSPDRLCVFPDYDPKQIE 167
Query: 139 TLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
L L KDI+ + I P ++GH+DIA K DPGP FPW +LY GIGAW D +
Sbjct: 168 LLITLSKDILKRNPDILPTAIVGHSDIAATRKNDPGPRFPWYQLY-QAGIGAWYDNDTLK 226
Query: 198 VEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQN 252
+ P L G+ L YGY +T T + AF+ HF
Sbjct: 227 KYWEMFNHSP-------LSIGLMQNALSRYGYGITETGIVDGATVDTLSAFQMHFL---- 275
Query: 253 PERIYADITTEDMFWAWALVAKY 275
P + + ++ +AL+ KY
Sbjct: 276 PWSVSGKLDSKTAATLFALIEKY 298
>gi|311748543|ref|ZP_07722328.1| N-acetylmuramoyl-L-alanine amidase [Algoriphagus sp. PR1]
gi|126577061|gb|EAZ81309.1| N-acetylmuramoyl-L-alanine amidase [Algoriphagus sp. PR1]
Length = 299
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 30/245 (12%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I FT R SSHYVI++ G ++Q++ D +R+WHA
Sbjct: 79 FVIIHHTAQDSLEQTIRTFTLPRTQ--VSSHYVIAK-------DGTIVQMLNDYLRSWHA 129
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G GKW +LNS+SIGI L N G + PF E QI +L +L K + ++ I
Sbjct: 130 GRGKWGSVTDLNSVSIGIELDNNG----------FEPFPEAQIESLLILCKRLKWKYGIP 179
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR- 213
+GH+DIAP K+DP FPW +L ++ G G W DE+ + + + P
Sbjct: 180 TANFIGHSDIAPSRKVDPNRFFPWDQLAME-GYGFWYDVDEVFPVINPKDDQTSIPLENT 238
Query: 214 -KLDRGIF--LELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWA 270
L + F + L+ GY+V++ + + I++FK HF E ++T D+
Sbjct: 239 DTLLKDSFDPIMALRIIGYDVSVPS--NAIQSFKLHFVQG---EEFSTELTELDLRILKN 293
Query: 271 LVAKY 275
L KY
Sbjct: 294 LYKKY 298
>gi|167647642|ref|YP_001685305.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Caulobacter sp. K31]
gi|167350072|gb|ABZ72807.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Caulobacter sp. K31]
Length = 243
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G+V P P ++ ++ D ++LHYT A + + S+HY++
Sbjct: 6 GFVDAPSPNFDARKSVPDC--------VVLHYTGMETGEAALARMCDPEAKV-SAHYMVE 56
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+V ++VP+ RAWHAG W+ +++NS SIG+ +VN G Y
Sbjct: 57 ED-------GRVFRLVPEERRAWHAGAAFWKGVKDINSASIGVEIVNPG------HEFGY 103
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
PF + Q+ + L DI S++ I +LGH+DIAPG K+DPG LFPW +L G G
Sbjct: 104 RPFPDAQVAAVINLLADIRSRWTIDDDRILGHSDIAPGRKIDPGELFPWKRL-AQAGHGL 162
Query: 190 WLSP 193
W+ P
Sbjct: 163 WVEP 166
>gi|418407104|ref|ZP_12980422.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens 5A]
gi|358006248|gb|EHJ98572.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium tumefaciens 5A]
Length = 259
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 117/264 (44%), Gaps = 38/264 (14%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G I P P NH + + ++LHYT A ++ N + SSHY +
Sbjct: 14 GATIAPSP------NHGERQGVAGPDIILLHYTGMTTADGALSWLCNPESQV-SSHYFVF 66
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+V+Q+V + RAWHAG W + ++NS SIGI + N G G
Sbjct: 67 ED-------GRVMQLVAETRRAWHAGKSSWAGEADINSRSIGIEIANQGHPG------GL 113
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F E Q+ + L +D ++ I P+ VL H+D+AP K+DPG FPW + +G+G
Sbjct: 114 PEFPEKQVAAVIELCRDCGQRWSIAPERVLAHSDVAPIRKVDPGEKFPW-DILSRHGVGH 172
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY V IT + AF+
Sbjct: 173 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGVEITGAYCEKTEGAVAAFQ 226
Query: 245 THFSANQNPERI--YADITTEDMF 266
HF P + ADI+T D
Sbjct: 227 RHF----RPALVDGIADISTIDTL 246
>gi|393718545|ref|ZP_10338472.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas echinoides ATCC
14820]
Length = 229
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 111/233 (47%), Gaps = 52/233 (22%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH---SSHYVISEKEGKYLPGGKV 81
+YD R + V ++LHYT A +R +L S+HY+I+E G +
Sbjct: 10 NYDER-TLPVSMIVLHYTGMQTAQAAI----DRLRDLDAKVSAHYLIAED-------GTI 57
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
+++V + RAWHAG +WR ++NS SIGI +VN G Y PF E QI L
Sbjct: 58 LRMVDEEKRAWHAGKSRWRGIEDVNSASIGIEIVNPG------HEFGYRPFLEEQIDALI 111
Query: 142 LLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAI 201
L DI ++ I V+GH+DIAP K DPG LFPW +L
Sbjct: 112 PLVADITARHGITRGNVVGHSDIAPTRKQDPGELFPWSRLA------------------- 152
Query: 202 VRKFKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
K + A P P K D G FL L+ +GY+V ++K + I AF+ F
Sbjct: 153 --KLRLALPRPTKNLMDPLWSDAG-FLIALERFGYDV--SDKLAAIVAFQRRF 200
>gi|393724537|ref|ZP_10344464.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. PAMC 26605]
Length = 229
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 116/243 (47%), Gaps = 44/243 (18%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R + V ++LHYT A + + S+HY+++E G+V+++
Sbjct: 10 NFDDR-SLPVSIIVLHYTGMQSAQAAIDRLRDPEAKV-SAHYLVAED-------GQVLRM 60
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP++ RAWHAG WR ++NS SIGI +VN G Y PF E QI L L
Sbjct: 61 VPEDKRAWHAGQSCWRGIEDVNSASIGIEIVNPG------HEFGYRPFMEQQIDALIPLV 114
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
I +++I V+GH+DIAP K DPG LFPW +L A VR
Sbjct: 115 SGIKDRYRISRGNVVGHSDIAPTRKQDPGELFPWNRL------------------AKVRL 156
Query: 205 FKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADI 260
P RP + LD FL L+ +GY+V +K + + AF+ F PE I I
Sbjct: 157 ALP-RPTKKLLDPLWTDAGFLVALERFGYDV--RDKLAAVVAFQRRF----RPELIDGVI 209
Query: 261 TTE 263
E
Sbjct: 210 DGE 212
>gi|395493547|ref|ZP_10425126.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. PAMC 26617]
Length = 229
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 115/246 (46%), Gaps = 50/246 (20%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R + V ++LHYT A + + S+HY+++E G+V+++
Sbjct: 10 NFDER-SLPVSMIVLHYTGMQTAQAAIDRLRDPEAKV-SAHYLVAED-------GQVLRM 60
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V ++ RAWHAG WR ++NS S+GI +VN G Y PF E QI ++ L
Sbjct: 61 VAESQRAWHAGKSCWRGIEDINSASVGIEIVNPG------HELGYRPFMEQQIDSVVRLV 114
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
DI + I V+GH+DIAP K DPG LFPW +L K
Sbjct: 115 GDITKRHGITRGNVVGHSDIAPTRKQDPGELFPWNRLA---------------------K 153
Query: 205 FKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIY 257
+ A P P K D G FL L+ +GY+V T+K + + AF+ F PE I
Sbjct: 154 LRLALPRPTKGLMDPMWADAG-FLVALERFGYDV--TDKLAAVVAFQRRF----RPELID 206
Query: 258 ADITTE 263
I E
Sbjct: 207 GVIDGE 212
>gi|414167992|ref|ZP_11424196.1| hypothetical protein HMPREF9696_02051 [Afipia clevelandensis ATCC
49720]
gi|410888035|gb|EKS35839.1| hypothetical protein HMPREF9696_02051 [Afipia clevelandensis ATCC
49720]
Length = 258
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 38/266 (14%)
Query: 8 MPGYVIDP--FPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSS 64
MP +V D + N+ D + +S ++LHYT + + A I + S+
Sbjct: 1 MPNFVPDSSVVSNVTPSPNYGDRKGVLSPNMIVLHYTGMADPASAIVRLCTTGTEV--SA 58
Query: 65 HYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKF 124
HYV+ E G +IQ V + RAWHAG W + ++NS+SIGI +VN G
Sbjct: 59 HYVVLED-------GNIIQCVREADRAWHAGASSWAGETDINSLSIGIEIVNPG------ 105
Query: 125 RSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
+Y F Q + L K I+ + I VLGH+D+APG K DPG FPW +L D
Sbjct: 106 HDLDYTDFPLRQTAAVIALCKGIMIRRDIPRHRVLGHSDVAPGRKKDPGEKFPW-RLLAD 164
Query: 185 YGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKA-YGYNVTITN-----KRS 238
G+G W+ P IVR + + D + L+ L A +GY + +
Sbjct: 165 SGVGLWVEP-----APIVRGVQTM--LGQSGDDVLALQKLFARFGYGIPLNGLYDAATMD 217
Query: 239 VIRAFKTHFSANQNPERI--YADITT 262
V+ AF+ HF PER+ AD +T
Sbjct: 218 VVTAFQRHF----RPERVDGVADTST 239
>gi|414165705|ref|ZP_11421952.1| hypothetical protein HMPREF9697_03853 [Afipia felis ATCC 53690]
gi|410883485|gb|EKS31325.1| hypothetical protein HMPREF9697_03853 [Afipia felis ATCC 53690]
Length = 257
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 112/247 (45%), Gaps = 34/247 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N D + G ++LHYT + A + S+HY++ E G +IQ
Sbjct: 19 NFNDRKAGREPDMILLHYTGMSDASTALKRLCTAGTEV-SAHYIVMED-------GNIIQ 70
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
V ++ RAWHAG W D ++NS SIGI +VN G Y F Q+ + L
Sbjct: 71 CVRESQRAWHAGTSAWAGDSDINSASIGIEIVNPG------HDLGYPDFPLRQVAAVIAL 124
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
K I+ + K+ VLGH+D+AP K DPG FPW +L D G+G W+ P + R
Sbjct: 125 CKGIMLRRKVPKHRVLGHSDVAPARKKDPGEKFPW-RLLADSGVGHWVEP--APIAHGDR 181
Query: 204 KFKPARPYP-RKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI- 256
K R L R + YGYNV T + + AF+ HF PER+
Sbjct: 182 KLLGTRSEEIMALQRALL-----RYGYNVLPTGQYDGVTMDGVAAFQRHF----RPERVD 232
Query: 257 -YADITT 262
AD +T
Sbjct: 233 GIADQST 239
>gi|359797498|ref|ZP_09300082.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter
arsenitoxydans SY8]
gi|359364609|gb|EHK66322.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter
arsenitoxydans SY8]
Length = 262
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 26/205 (12%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + A + + + S+HY+++E G+ ++V ++ AWH
Sbjct: 41 VRSIVLHYTTVDDARSMQLLSKGKV----SAHYLVNES-------GRAYRLVDEDRAAWH 89
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + +NS SIGI +VN G + ++ ++E Q+ L +L +DI+ + I
Sbjct: 90 AGASSWYGNVAMNSTSIGIEIVNPGWTEGEDGKPLWHAYNERQMRALTILLRDIMQRHGI 149
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPW--------GKLYLDYGIGAWL-------SPDEMTV 198
P+ ++GH+DIAP K+DPGPLFPW G+ Y + G A L +PD
Sbjct: 150 APENIVGHSDIAPQRKVDPGPLFPWKALAAAGIGRWYDETGAAAHLARLQVEGTPDAAWF 209
Query: 199 EAIVRKFKPARPYPRKLDRGIFLEL 223
+ +++ A P LDR L
Sbjct: 210 QKQLQRLGYASPQDGTLDRATINTL 234
>gi|395789726|ref|ZP_10469236.1| hypothetical protein ME9_00953 [Bartonella taylorii 8TBB]
gi|395428564|gb|EJF94640.1| hypothetical protein ME9_00953 [Bartonella taylorii 8TBB]
Length = 314
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 144/325 (44%), Gaps = 84/325 (25%)
Query: 19 WEKNRNHYDSRDGMS--VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKY 75
++ + N Y S S V +LI+HYT NF + A T R S+HY++ + E Y
Sbjct: 2 YQIDYNSYRSTKSFSRRVHFLIMHYTSLNFKESVMALTGERV----SAHYLVPDPSEQTY 57
Query: 76 LPGG----KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIG-------------------- 111
+ G ++ +V +N RAWHAG+ W N+N SIG
Sbjct: 58 IEAGFKDMRIFNLVDENERAWHAGVSSWAGRSNINDTSIGIEIVNLATGHSDSVEQTYVE 117
Query: 112 --------IHLVNGG----------------VVGE--KFRSTN----------YYPFDEN 135
++LVN V G +F + N + P++
Sbjct: 118 VALKDARVLNLVNKDGCQLQTNVCSWAEGTHVSGTALQFETINLTTYNNEDFVFPPYNPT 177
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + L +I+ ++ I P V+GH+DIA G K DPG FPW +LY+ GIGAW D
Sbjct: 178 QIDAVKELALNILQRYPDIMPVDVVGHSDIAIGRKSDPGAAFPWKELYM-AGIGAWY--D 234
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSAN 250
+ + ++F P + L LK YGY++++ + +IRAF+ HF
Sbjct: 235 DELKDHYQKQFSKGLPAKEDI-----LAKLKCYGYDISVACTEIGYKDLIRAFQLHFR-Q 288
Query: 251 QNPERIYADITTEDMFWAWALVAKY 275
+N + I D+ T + +ALV KY
Sbjct: 289 ENYDGIL-DVETAAII--YALVDKY 310
>gi|398386124|ref|ZP_10544128.1| negative regulator of beta-lactamase expression [Sphingobium sp.
AP49]
gi|397718777|gb|EJK79360.1| negative regulator of beta-lactamase expression [Sphingobium sp.
AP49]
Length = 232
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 46/239 (19%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKY 75
P E ++D R + V L+LHYT A + +N + S+HYV++E
Sbjct: 4 IPMIETPSPNFDER-SLPVTMLVLHYTGMPDAASAINWLANPESKV-SAHYVVTED---- 57
Query: 76 LPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDEN 135
G++I++V ++ RAWHAG WR ++NS SIGI +VN G Y PF E
Sbjct: 58 ---GQIIRMVGEDKRAWHAGRSHWRGIDDVNSASIGIEIVNPG------HEWGYRPFPEA 108
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
Q+ +L L DIV + +I ++GH+DIAP K DPG LFPWG+L
Sbjct: 109 QMGSLIPLIHDIVQRHRITRGNIVGHSDIAPARKQDPGELFPWGQLA------------- 155
Query: 196 MTVEAIVRKFKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ + A P P K D G F+ L+ +GY+ I + + AF+ F
Sbjct: 156 --------RLRLALPRPTKNLMDPHWTDSG-FMLALERFGYD--IAEPQPAVVAFQRRF 203
>gi|83858925|ref|ZP_00952447.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis sp. HTCC2633]
gi|83853748|gb|EAP91600.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis sp. HTCC2633]
Length = 245
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 35/225 (15%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ + L+LHYT ++ + S+HYV+ E G++IQ+V ++ RA
Sbjct: 16 LPLSMLVLHYTGMETGEAAIERLADSDAGV-SAHYVVEET-------GRIIQMVAEDKRA 67
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG G WR ++NS SIGI +VNG G F +Y E QI + L + I+S+
Sbjct: 68 WHAGKGVWRGCEDVNSASIGIEIVNG---GHDFGLPDY---PEAQIVAVLALSRAILSRH 121
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+GH+D+AP K DPG FPW +L + G+G W P F P+ P
Sbjct: 122 PIAACDVIGHSDLAPDRKQDPGEKFPWKRLA-ENGVGLWPDPAPAG-------FAPSAPG 173
Query: 212 PRKLDRGIFLELLK----AYGYNVTITNK-----RSVIRAFKTHF 247
D G +E L+ GY V T +SV+ AF+ F
Sbjct: 174 ----DDGEAVEALRQSLFEIGYGVARTGAYDDALKSVVLAFQRRF 214
>gi|347526781|ref|YP_004833528.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium sp. SYK-6]
gi|345135462|dbj|BAK65071.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium sp. SYK-6]
Length = 227
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 120/248 (48%), Gaps = 44/248 (17%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E ++D R + + L+LHYT A + ++ + S+HYV++E G
Sbjct: 3 ETPSPNFDER-TLPISVLVLHYTGMPDAPSAIQWLASPESKV-SAHYVVTED-------G 53
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+VI++V + RAWHAG+ WR N+NS SIGI L+N G Y PF + QI
Sbjct: 54 QVIRMVDERKRAWHAGVSWWRGISNINSASIGIELINPG------HEWGYRPFPDEQIDA 107
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L L DI+++ +I V+GH+DIAP K DPG LFPW KL
Sbjct: 108 LIPLVHDIMTRHRITRGNVVGHSDIAPARKQDPGELFPWHKL------------------ 149
Query: 200 AIVRKFKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPER 255
A +R P RP +D G F+ L+ +GY+ I++ + + AF+ F PE
Sbjct: 150 ARLRLALP-RPTRNLMDPHWSDGGFMLALERFGYD--ISDPEAAVVAFQRRF----RPEL 202
Query: 256 IYADITTE 263
I I E
Sbjct: 203 IDGVIDGE 210
>gi|115524111|ref|YP_781022.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris BisA53]
gi|115518058|gb|ABJ06042.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris BisA53]
Length = 294
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N D G + ++LHYT A + S+HYV+ E G+++Q
Sbjct: 46 NFGDRNKGRAPDMIVLHYTGMPDVEGALARLCQDGTEV-SAHYVVLED-------GRIVQ 97
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
VP+ RAWHAG+ W + ++NS SIGI +VN G Y F Q+ + L
Sbjct: 98 CVPEAKRAWHAGLAFWAGEEDINSCSIGIEIVNRG------HDWGYPDFPLRQVAAVIAL 151
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ I+ + I+P VL H+D+AP K DPG FPW L+ D G+G W+ P V V
Sbjct: 152 CRGIIIRRGIQPHRVLAHSDVAPARKQDPGEKFPWRALW-DSGVGHWV-PAAPIVRGDVM 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERI-- 256
K L R L YGY +T + V+ AF+ HF P+++
Sbjct: 210 KLGSDGDAVLALQRA-----LAEYGYGLTPSGHYNAATAEVVTAFQRHF----RPQKVDG 260
Query: 257 YADITT 262
AD +T
Sbjct: 261 IADTST 266
>gi|404253874|ref|ZP_10957842.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. PAMC 26621]
Length = 229
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 115/246 (46%), Gaps = 50/246 (20%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R + V ++LHYT A + + S+HY+++E G+V+++
Sbjct: 10 NFDGR-SLPVSMIVLHYTGMQTAQAAIDRLRDPEAKV-SAHYLVAED-------GQVLRM 60
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V ++ RAWHAG WR ++NS S+GI +VN G Y PF E QI ++ L
Sbjct: 61 VAESQRAWHAGKSCWRGIEDINSASVGIEIVNPG------HELGYRPFMEQQIDSVVRLV 114
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
DI + I V+GH+DIAP K DPG LFPW +L K
Sbjct: 115 GDITKRHGITRGNVVGHSDIAPTRKQDPGELFPWNRLA---------------------K 153
Query: 205 FKPARPYPRK-------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIY 257
+ A P P K D G FL L+ +GY+V T+K + + AF+ F PE I
Sbjct: 154 LRLALPRPTKGLMDPMWADAG-FLVALERFGYDV--TDKLAAVVAFQRRF----RPELID 206
Query: 258 ADITTE 263
I E
Sbjct: 207 GVIDGE 212
>gi|422323101|ref|ZP_16404141.1| exported hydrolase [Achromobacter xylosoxidans C54]
gi|317401921|gb|EFV82527.1| exported hydrolase [Achromobacter xylosoxidans C54]
Length = 261
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V++++LHYT + A + + + S+HY+I G+ ++V ++ AWH
Sbjct: 40 VRFVVLHYTSTDDALSMKLLSQGKV----SAHYLIDTP-------GRAYRLVDESRAAWH 88
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W +NS S+GI +VN G ++ + + QI L +L +DI+ + I
Sbjct: 89 AGESAWYGLNAMNSTSVGIEIVNPGWTDGDDGKPQWHAYGDRQIRALTILLRDIIQRHGI 148
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+GH+DIAP K+DPGPLFPW +L GIG W DE A + + + A+ P
Sbjct: 149 APRNVVGHSDIAPQRKVDPGPLFPWKQLAA-AGIGRWY--DEAGAAAHLARLQ-AQGTP- 203
Query: 214 KLDRGIFLELLKAYGYNV--TITNKRS---VIRAFKTHF 247
D F + L+ GY T T R+ V+ AF+ H+
Sbjct: 204 --DVAWFQQQLQRLGYTSPQTGTLDRATINVLAAFQMHY 240
>gi|443474145|ref|ZP_21064166.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas pseudoalcaligenes
KF707]
gi|442905080|gb|ELS29995.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas pseudoalcaligenes
KF707]
Length = 259
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 110/223 (49%), Gaps = 32/223 (14%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+Y++LHYT + T + SSHY+I ++ + ++V +N RAWH
Sbjct: 35 VQYVVLHYTSTGLESSLRLLTRDGV----SSHYLIGDQPAT------IYRLVDENRRAWH 84
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYPFDENQIHTLGLLGKDIVS 149
AG +W+ LN+ ++GI LVN G +R T Y PF + QI L L +DIV
Sbjct: 85 AGESEWQGRTWLNASTLGIELVNDG-----YRDTPAGRVYQPFSDEQIDALIPLLQDIVK 139
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+ + ++GH+DIAP K+DPGPLFPW +L D G+ W PD V +F A
Sbjct: 140 RHHLPLGSIIGHSDIAPQRKVDPGPLFPWKRL-ADAGLVPW--PDAAAVARAQARFAVAL 196
Query: 210 PYPRKLDRGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
P G F E L GY T R+VI AF+ +
Sbjct: 197 PTV-----GWFQEQLARQGYTTPRTGVLDKETRNVIAAFQMKY 234
>gi|407782322|ref|ZP_11129535.1| N-acetylmuramoyl-L-alanine amidase [Oceanibaculum indicum P24]
gi|407206052|gb|EKE76014.1| N-acetylmuramoyl-L-alanine amidase [Oceanibaculum indicum P24]
Length = 234
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
RDG ++LHYT A + A + S+HY+I E G ++V +
Sbjct: 15 RDGRKPDLVVLHYTGMKSAAEALERMCDPASEV-SAHYMIDED-------GTCHRLVDEA 66
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
MRAWHAG+ W +R++NS+SIGI LVN G Y PF + QI L L ++
Sbjct: 67 MRAWHAGVACWAGERDVNSISIGIELVNPG------HEHGYRPFPDPQIARLVALCSEMK 120
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
++ I P +GH+D+AP K DPG LFPW K G G W P+
Sbjct: 121 TRHGIAPHRFVGHSDVAPARKQDPGELFPW-KDMARQGFGIWPKPN 165
>gi|296532830|ref|ZP_06895502.1| N-acetylmuramoyl-L-alanine amidase [Roseomonas cervicalis ATCC
49957]
gi|296266843|gb|EFH12796.1| N-acetylmuramoyl-L-alanine amidase [Roseomonas cervicalis ATCC
49957]
Length = 258
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 20 EKNRNHYDSR-DGMSVKYLILHYTVYNFAHI----ITAFTSNRAHNLHSSHYVISEKEGK 74
E+ ++D+R +G+ + L+LHYT A + S HYV+ E
Sbjct: 24 ERPSPNHDARPEGVPIDMLVLHYTGMQSAQAALDRLCDPAPPAPLPPVSCHYVVEED--- 80
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G++ ++VP+ RAWHAG WR LN+ SIGI +VN G Y PF
Sbjct: 81 ----GRIWRLVPEARRAWHAGQSYWRGHTLLNARSIGIEIVNPG------HEWGYRPFPA 130
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ + L DI+++ I P+ V+GH+DIAP K DPG LF W L GIG W P
Sbjct: 131 LQMAAVAELCLDILARHPIPPRNVVGHSDIAPDRKQDPGELFDWEGLAA-LGIGLW--PG 187
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
E E++ A+ ELL GY + I AF+ H+
Sbjct: 188 EARGESLALPAGAAQ---------RAAELLGRIGYPLDPARPALAIAAFQRHW 231
>gi|298293110|ref|YP_003695049.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Starkeya novella DSM 506]
gi|296929621|gb|ADH90430.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Starkeya novella DSM 506]
Length = 280
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 37/234 (15%)
Query: 25 HYDSRDGMSV-KYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
+D G++ L+LHYT + + + S+HYV+ E G++ Q
Sbjct: 47 QFDVTSGVAAPDMLLLHYTGMESTAEAVEWLRSPERGV-SAHYVVFED-------GRIAQ 98
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ RAWHAG W ++NS+SIGI + N G Y PF Q+ + L
Sbjct: 99 LVPEARRAWHAGASHWAGATDINSLSIGIEIANPG------HDHGYPPFPAIQVEAVTAL 152
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
KDI+S+ +I P VL H+D+AP K DPG FPW L+ G+G +V
Sbjct: 153 CKDILSRHRIAPDRVLAHSDVAPLRKADPGEKFPWEVLH-RAGVG-----------HLVE 200
Query: 204 KFKPAR-PYPRKLDRGIFLELLKA----YGYNVTIT-----NKRSVIRAFKTHF 247
+ P+ Y + + G +E L+A YGY V + +V+RAF+ HF
Sbjct: 201 EVPPSDGRYFMRGEHGQPIEALQAMLALYGYGVPVNGTYCETTEAVVRAFQRHF 254
>gi|389722366|ref|ZP_10189013.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter sp. 115]
gi|388442169|gb|EIL98382.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter sp. 115]
Length = 270
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHNLHSSHYVISEK 71
+P W + NH R + ++LH+T + A + T T N + S+HY+I
Sbjct: 38 NPLATWVPSPNHDIRRPVL----IVLHFTNEHSAQEALDTLRTRNSGGPV-SAHYLIGSD 92
Query: 72 EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
G + Q+V D +RAWHAG G+W +LNS SIGI L N G + P
Sbjct: 93 -------GHIYQLVADQLRAWHAGPGRWGTITDLNSASIGIELDNDG----------HTP 135
Query: 132 FDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F + QI +L L D+ ++ I P ++GH D+APG K DPGPLFPW +L D G G W
Sbjct: 136 FAQPQIASLLRLLADLTTRLHIPPTQIIGHEDLAPGRKDDPGPLFPWQQLA-DAGFGRW 193
>gi|325293478|ref|YP_004279342.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium sp. H13-3]
gi|325061331|gb|ADY65022.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium sp. H13-3]
Length = 259
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 109/243 (44%), Gaps = 32/243 (13%)
Query: 10 GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS 69
G I P P NH + + ++LHYT A ++ N + SSHY +
Sbjct: 14 GATIAPSP------NHGERQGVAGPDIILLHYTGMTTADGALSWLCNPESQV-SSHYFVF 66
Query: 70 EKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
E G+V+Q+V + RAWHAG W + ++NS SIGI + N G G
Sbjct: 67 ED-------GRVMQLVAETRRAWHAGKSSWAGEADINSRSIGIEIANQGHPG------GL 113
Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
F E Q+ + L +D ++ I P+ VL H+D+AP K+DPG FPW + +G+G
Sbjct: 114 PEFPEKQVAAVIELCRDCGQRWSIAPERVLAHSDVAPIRKVDPGEKFPW-DILSRHGVGH 172
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
W+ P + ++ +P +L YGY V IT + AF+
Sbjct: 173 WVEPAPIRGGRFFQRGDHGQPVE------ALQSMLSIYGYGVEITGAYCEKTEGAVAAFQ 226
Query: 245 THF 247
HF
Sbjct: 227 RHF 229
>gi|92116826|ref|YP_576555.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14]
gi|91799720|gb|ABE62095.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14]
Length = 289
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 120/271 (44%), Gaps = 34/271 (12%)
Query: 1 MPSSIHGMPGYVIDP--FPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRA 58
+P ++ GM +V D + + N D G ++LHYT A
Sbjct: 17 IPKALAGMSTFVPDSSVVSDTVPSLNFGDRAKGRQPDMIVLHYTGMPDVEGALARLCTSG 76
Query: 59 HNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG 118
++ S+HYV+ E G+++Q V + RAWHAG+ W + ++NS SIGI +VN G
Sbjct: 77 TDV-SAHYVVLED-------GRIVQCVQEAKRAWHAGVASWAGEEDINSCSIGIEIVNRG 128
Query: 119 VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPW 178
Y F Q+ + L + I+ + I V+GH+D+AP K DPG FPW
Sbjct: 129 ------HDWGYPDFPLRQVAAVIALCRGIILRRDIPAHRVVGHSDVAPARKKDPGEKFPW 182
Query: 179 GKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI----- 233
L D G+G W+ P + +++ D + L YGY +
Sbjct: 183 HSLA-DSGVGHWVRPSPIVRGDVLKTGSEGD------DVRALQQSLARYGYGIKASGTFD 235
Query: 234 TNKRSVIRAFKTHFSANQNPERI--YADITT 262
T V+ AF+ HF PER+ AD +T
Sbjct: 236 TPTMEVVTAFQRHF----RPERVDGVADQST 262
>gi|260427017|ref|ZP_05780996.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citreicella sp. SE45]
gi|260421509|gb|EEX14760.1| N-acetylmuramoyl-L-alanine amidase AmiD [Citreicella sp. SE45]
Length = 201
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 101/212 (47%), Gaps = 39/212 (18%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A + N + S+HYVI+ G Q+V ++MRAWHAG+
Sbjct: 5 VVLHYTAMAGAEAARDWLCNPVSEV-SAHYVIARD-------GTCWQLVREDMRAWHAGL 56
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G W +NS SIGI + N T PF E Q+ L L DI+ +++I P+
Sbjct: 57 GAWGSVEEVNSRSIGIEIAN----------TGKEPFPEPQMAALEPLLADILGRWQIPPE 106
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLY-------LDYG-----------IGAWLSPDE--M 196
V+GH+D+APG K+DPGP F W +L D G G +PD+
Sbjct: 107 RVIGHSDMAPGRKIDPGPRFDWARLARRGLAIRADAGAPGDFHADARSFGYRFTPDQHDA 166
Query: 197 TVEAIVRKFKPARPYPRKL-DRGIFLELLKAY 227
+ A +F+P P L DR + L +A+
Sbjct: 167 VLAAFRDRFRPGASGPLDLTDRALMAGLARAW 198
>gi|293603996|ref|ZP_06686409.1| N-acetylmuramoyl-L-alanine amidase [Achromobacter piechaudii ATCC
43553]
gi|292817600|gb|EFF76668.1| N-acetylmuramoyl-L-alanine amidase [Achromobacter piechaudii ATCC
43553]
Length = 261
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + A + + + SSHY+I++ G+ ++V +N AWH
Sbjct: 40 VRSIVLHYTTVDDATSLKLLSRGKV----SSHYLITDT-------GRAYRLVDENRAAWH 88
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + +NS SIGI +VN G ++ +++ Q+ L +L +D++ + +
Sbjct: 89 AGASSWYGNIAMNSTSIGIEIVNPGWTEGPDGKPLWHAYNDRQVRALTILLRDLIQRHGV 148
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+GH+DIAP K+DPGPLFPW L + GIG W + E + R P
Sbjct: 149 APENVVGHSDIAPQRKVDPGPLFPWKTLAI-AGIGRWYD-ETGAAEHLARLQVQGMP--- 203
Query: 214 KLDRGIFLELLKAYGYNVTITNKR-----SVIRAFKTHF 247
D F + L+ GY K + + AF+ H+
Sbjct: 204 --DVAWFQKQLQRLGYACGQDGKLDAATINTLAAFQMHY 240
>gi|163745929|ref|ZP_02153288.1| N-acetylmuramoyl-L-alanine amidase, putative [Oceanibulbus
indolifex HEL-45]
gi|161380674|gb|EDQ05084.1| N-acetylmuramoyl-L-alanine amidase, putative [Oceanibulbus
indolifex HEL-45]
Length = 229
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 18/158 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R G+ + +ILHYT A + + + S+HY+IS + G++IQ
Sbjct: 14 NCGPRRGGLRPRLIILHYTAMTSAQAALERLCDPSAEV-SAHYLISGR-------GEIIQ 65
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG G+W ++NS SIGI L N G +PF E Q+ L L
Sbjct: 66 MVEEDQRAWHAGQGEWAGLDDINSRSIGIELDNRG----------DHPFSEPQMQALEAL 115
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+I+++ I P+ V+GH+ +APG K+DPGP F W +L
Sbjct: 116 LPEIMARHDIAPEGVIGHSCLAPGRKVDPGPRFDWARL 153
>gi|409400795|ref|ZP_11250768.1| anhydro-N-acetylmuramyl-tripeptide amidase [Acidocella sp. MX-AZ02]
gi|409130295|gb|EKN00075.1| anhydro-N-acetylmuramyl-tripeptide amidase [Acidocella sp. MX-AZ02]
Length = 224
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 25 HYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
++D+R+ V +L+LHYT + I + RA S+HYV+ E G +
Sbjct: 8 NFDARE-EPVSHLVLHYTGMPTGRAAIDLLKAPRAKV--SAHYVVEED-------GTIFN 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ MRAWHAGI WR LN SIGI +VN G Y F Q+ + L
Sbjct: 58 LVPEAMRAWHAGISSWRGKSALNGASIGIEIVNPG------HEWGYRAFPPAQMQAVLAL 111
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ I+ + I + V+ H+DIAP K DPG LF W L +G+G W
Sbjct: 112 CQGILRRHAIPARNVVAHSDIAPNRKQDPGELFDWPWLAA-HGVGIWTD----------- 159
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ P G + L A GY++T+ + SVIRAF+ HF
Sbjct: 160 DYAPP---------GDLMADLAAIGYDITLP-QDSVIRAFQRHF 193
>gi|311104739|ref|YP_003977592.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter xylosoxidans
A8]
gi|310759428|gb|ADP14877.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter xylosoxidans
A8]
Length = 261
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+ ++LHYT + A + + + SSHY++++ G V ++V ++ AWH
Sbjct: 40 VRSIVLHYTSVDDARSMELLSKGKV----SSHYLVND-------AGHVYRLVDESRAAWH 88
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W + +NS SIGI +VN G ++P+++ Q+ L +L +DI + I
Sbjct: 89 AGASSWYGNIAMNSTSIGIEIVNPGWTEGTDGKPVWHPYNDRQLRALTILVRDIAQRHGI 148
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
P+ ++GH+DIAP K+DPGPLFPW L GIG W
Sbjct: 149 APENIVGHSDIAPQRKVDPGPLFPWKALAAS-GIGRW 184
>gi|429097842|ref|ZP_19159948.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter dublinensis 582]
gi|426284182|emb|CCJ86061.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter dublinensis 582]
Length = 162
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 82/152 (53%), Gaps = 19/152 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVIS----EKEGKYLPGGKVIQIVPDNMRAW 92
L++HYT +F + T SSHY+I EK GK + + Q+VP+ AW
Sbjct: 2 LVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPEKGGKPV----IWQLVPERELAW 53
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
HAG WR LN S+GI L N G + G+K ++PF QI L L +DI+
Sbjct: 54 HAGASFWRGATRLNDTSVGIELENYGYRKIDGQK----RFFPFSPPQIAVLSKLARDIIH 109
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+++I PQ V+ H DIAP K DPGPLFPW L
Sbjct: 110 RYQIAPQNVVAHADIAPQRKDDPGPLFPWQAL 141
>gi|325913786|ref|ZP_08176145.1| negative regulator of beta-lactamase expression [Xanthomonas
vesicatoria ATCC 35937]
gi|325539861|gb|EGD11498.1| negative regulator of beta-lactamase expression [Xanthomonas
vesicatoria ATCC 35937]
Length = 251
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+ISE
Sbjct: 19 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVQQSLSTLRGRNSGGRVSAHYLISEDG 74
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 75 QRY-------QLVSDTQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 117
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L +D+ ++ +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 118 APAQIDSLLVLLQDLCTRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 174
>gi|114764629|ref|ZP_01443833.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Pelagibaca
bermudensis HTCC2601]
gi|114543005|gb|EAU46025.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseovarius sp.
HTCC2601]
Length = 231
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG ++LHYT A + + + S+HYVI +
Sbjct: 15 PLWHPSDNFGPRRDGAVPDIVVLHYTAMASAEGARDWLCHPDAGV-SAHYVIGRQ----- 68
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G V Q+V + MRAWHAG+G W +NS SIGI + N T PF E Q
Sbjct: 69 --GTVWQLVREEMRAWHAGLGAWGSVTEVNSRSIGIEIAN----------TGAEPFPEPQ 116
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ L L I+ +++I P+ V+GH+D+ PG K+DPGP F W +L
Sbjct: 117 MAALEKLLAGILQRWRIPPERVIGHSDMTPGRKIDPGPRFDWARL 161
>gi|407973674|ref|ZP_11154585.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor indicus C115]
gi|407430734|gb|EKF43407.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor indicus C115]
Length = 260
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
LILHYT A+ + + SSHY++ E G+++Q+V + RAWHAG
Sbjct: 34 LILHYTGMETGEGAQAWLCDPRSEV-SSHYIVHED-------GRIVQMVREADRAWHAGR 85
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G W ++NS SIGI +VN G + + F + QI + L DI + +I P
Sbjct: 86 GSWGGVDDVNSFSIGIEIVNAGPL------HGFPGFPDAQIEAVIRLSGDICRRHRIFPH 139
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D APG K+DPG FPW L G+G ++ P +T I+++ D
Sbjct: 140 RVLAHSDTAPGRKIDPGERFPWHVLAA-AGVGHYVLPVPVTPGKILQEG----------D 188
Query: 217 RGIFLE----LLKAYGYNVTIT-----NKRSVIRAFKTHFSANQ 251
RG ++ +L YGY+V + +V++AF+ HF Q
Sbjct: 189 RGAAVDGLRRMLARYGYDVEKEGFFDPSLSAVVQAFQRHFRPAQ 232
>gi|407787263|ref|ZP_11134405.1| N-acetylmuramoyl-L-alanine amidase [Celeribacter baekdonensis B30]
gi|407200089|gb|EKE70101.1| N-acetylmuramoyl-L-alanine amidase [Celeribacter baekdonensis B30]
Length = 254
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 37/229 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N + R G+ ++LHYT A H + S+HY+I + G +++
Sbjct: 36 NFGERRGGVRPDMVVLHYTAMTSADAALERLCCPDHEV-SAHYLIDGR-------GVILR 87
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V + RAWHAG G+W R ++NS SIGI L N G V PF +Q+ L L
Sbjct: 88 LVDEENRAWHAGAGQWGRVTDVNSHSIGIELANPGTV----------PFAADQMDALERL 137
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
DI+ ++ + P+ V+ H+D+AP K+DPGP F W +L L G+ W ++T++ R
Sbjct: 138 LTDIIERWFMAPERVIAHSDMAPSRKIDPGPRFDWRRLALG-GLSVW---PQVTLDFEAR 193
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQN 252
+ + FL+ L A+GY +++ AF+ F N +
Sbjct: 194 EDE-------------FLQGLAAFGYPDAPIE--ALLPAFRARFRPNHH 227
>gi|423016228|ref|ZP_17006949.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter xylosoxidans
AXX-A]
gi|338780754|gb|EGP45155.1| N-acetylmuramoyl-L-alanine amidase AmiD [Achromobacter xylosoxidans
AXX-A]
Length = 261
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 23/219 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V+++++HYT + A + + + S+HY+I G+ ++V + AWH
Sbjct: 40 VRFVVVHYTSTDDAVSMKLLSQGKV----SAHYLIDTS-------GRAHRLVDETRAAWH 88
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG W +NS SIGI +VN G ++ + + QI L LL +DI+ + I
Sbjct: 89 AGESAWYGLNAMNSTSIGIEIVNPGWTDGTDGKPQWHAYGDRQIRALTLLLRDIIQRNGI 148
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P+ V+GH+DIAP K+DPGPLFPW +L GIG W DE A + + + A+ P
Sbjct: 149 TPENVVGHSDIAPQRKVDPGPLFPWKQLAA-AGIGRWY--DEAGAAAHLARLQ-AQGTP- 203
Query: 214 KLDRGIFLELLKAYGY----NVTITNKR-SVIRAFKTHF 247
D F + L+ GY N T+ +V+ AF+ H+
Sbjct: 204 --DVSWFQQQLQRLGYTTPQNGTLDRATINVLAAFQMHY 240
>gi|429093171|ref|ZP_19155775.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter dublinensis 1210]
gi|426741982|emb|CCJ81888.1| N-acetylmuramoyl-L-alanine amidase [Cronobacter dublinensis 1210]
Length = 276
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 119/253 (47%), Gaps = 30/253 (11%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI--QIVPDNMRA 91
+K L++HYT +F + T SSHY+I + GGK + Q+VP+ A
Sbjct: 44 IKVLVIHYTADDFDTSLATLTDRHV----SSHYLIPANPPEK--GGKPVIWQLVPERELA 97
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGG---VVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
WHAG WR LN S+GI L N G + G+K ++PF QI L L +DI+
Sbjct: 98 WHAGASFWRGATRLNDTSVGIELENYGYRKIDGQK----RFFPFSPPQIAVLSKLARDII 153
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPA 208
+++I PQ V+ H DIAP K DPG GIGAW PD V + P
Sbjct: 154 HRYQIAPQNVVAHADIAPQRKDDPG-AAVPMAGAGGAGIGAW--PDAQRVAFYLAGRNPY 210
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTI----TNKRSVIRAFKTHFSANQNPERIYADITTED 264
P + L+LL YGY+VT ++ VI+AF+ HF P R +
Sbjct: 211 AP----VGENDLLDLLARYGYDVTPQMSEVQRKRVIQAFQMHF----RPARYDGLPDAQS 262
Query: 265 MFWAWALVAKYGS 277
A AL+ KYG
Sbjct: 263 QAIAEALLEKYGQ 275
>gi|326386903|ref|ZP_08208517.1| negative regulator of AmpC, AmpD [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208583|gb|EGD59386.1| negative regulator of AmpC, AmpD [Novosphingobium nitrogenifigens
DSM 19370]
Length = 234
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 15 PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
P P W + + + V ++LHYT + A S+HY+I E
Sbjct: 11 PSPNWNERK--------LPVSMVVLHYTGMQTGEEALDRLCD-AEAEVSAHYMIDED--- 58
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G V +VP++ RAWHAG WR ++NS SIGI LVN G Y PF +
Sbjct: 59 ----GTVTALVPEDKRAWHAGRAYWRGITDVNSASIGIELVNPG------HEWGYRPFSD 108
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ L L DIV + I P V+GH+D+AP K DPG LF W L Y
Sbjct: 109 AQMEALVPLLADIVRRHGIAPANVVGHSDVAPARKTDPGELFDW-DLLARY--------- 158
Query: 195 EMTVEAIVRKFKPARPYPRKL----DRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
+ A+P PR + G F L+ YGY+ I + + IRAF+ +
Sbjct: 159 ---------RLALAKPKPRMRLIFDNDGAFFLALERYGYD--IADGAAAIRAFERRW--- 204
Query: 251 QNPERIYADI 260
P RI +I
Sbjct: 205 -RPHRITGEI 213
>gi|357974147|ref|ZP_09138118.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. KC8]
Length = 230
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 49/245 (20%)
Query: 8 MPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHY 66
M G + P P ++D R + V L+LHYT + + A I T A S+HY
Sbjct: 1 MTGIIDCPSP-------NHDER-SLPVSVLVLHYTGMADAASAIERLTDADAKV--SAHY 50
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
V++E G+V+++V + RAWHAG +WR ++NS SIGI +VN G +F
Sbjct: 51 VVTED-------GQVLRLVDEARRAWHAGRSEWRTITDINSASIGIEIVNPG---HEF-- 98
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
Y PF Q+ L L DIV++ I+P V+GH+DIAP K+DPG LF W L
Sbjct: 99 -GYRPFPPEQMAALLPLVADIVARHGIEPANVVGHSDIAPTRKIDPGELFDWDLLAR--- 154
Query: 187 IGAWLSPDEMTVEAIVRKFKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRA 242
ARP D G FL L +GY+V ++ + +RA
Sbjct: 155 ----------------HNLALARPRRNLADPHWTPGGFLLALSRFGYDV--SDGPAAVRA 196
Query: 243 FKTHF 247
F+ F
Sbjct: 197 FQRRF 201
>gi|39936601|ref|NP_948877.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas
palustris CGA009]
gi|39650457|emb|CAE28980.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine
amidase, family 2 [Rhodopseudomonas palustris CGA009]
Length = 261
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 37 LILHYTVYNFAHIITAFTS-NRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + A T +A S+HYV+ E G+++Q VP++ RAWHAG
Sbjct: 32 IVLHYT--GMPDVEGALTRLCKAGTEVSAHYVVLED-------GRILQCVPESKRAWHAG 82
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ W + ++NS SIGI ++N G Y + QI + L + I+ + + P
Sbjct: 83 VASWAGEEDINSCSIGIEIINRG------HDWGYPDYPLRQIAAVIALCRGIILRRDVPP 136
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
V+GH+D+AP K DPG FPW L G+G W+ P + +++
Sbjct: 137 HRVVGHSDVAPARKKDPGEKFPWRSLAAS-GVGLWVEPARIVPGPALKQGTEGD------ 189
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
+ + + L YGY V + V+ AF+ HF PE++ AD +T
Sbjct: 190 EVRLLQQALADYGYRVPVNGSYDHATTDVVTAFQRHF----RPEKVDGIADAST 239
>gi|326798199|ref|YP_004316018.1| N-acetylmuramoyl-L-alanine amidase [Sphingobacterium sp. 21]
gi|326548963|gb|ADZ77348.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sphingobacterium sp. 21]
Length = 287
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 39/221 (17%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++ILH+T + + FT R S+HY+I ++ GKV Q++ D +RAWHA
Sbjct: 86 FVILHHTAQDSIQQTLRTFTLERTQ--VSAHYIIDKE-------GKVYQLLNDYLRAWHA 136
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G G+W ++NS SIG+ + N GV P+ E QI+ L +L + + +KI
Sbjct: 137 GNGRWGSVTDMNSASIGVEMDNNGV----------EPYTEPQINNLLVLLDTLKANYKIP 186
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+ +GH DIAPG K+DPG FPW +L + G G W + ++A F P
Sbjct: 187 SENFIGHGDIAPGRKVDPGINFPWKRL-AEKGFGLWY---DDVLQAPPTTFNP------- 235
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPER 255
L+ L+ GY+ N + I AFK HF + E
Sbjct: 236 ------LDGLRILGYDT--RNASAAILAFKRHFIPEETTEE 268
>gi|192292423|ref|YP_001993028.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris TIE-1]
gi|192286172|gb|ACF02553.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris TIE-1]
Length = 288
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 37 LILHYTVYNFAHIITAFTS-NRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + A T +A S+HYV+ E G+++Q VP++ RAWHAG
Sbjct: 59 IVLHYT--GMPDVEGALTRLCKAGTEVSAHYVVLED-------GRILQCVPESKRAWHAG 109
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ W + ++NS SIGI ++N G Y + QI + L + I+ + + P
Sbjct: 110 VASWAGEEDINSCSIGIEIINRG------HDWGYPDYPLRQIAAVIALCRGIILRRDVPP 163
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
V+GH+D+AP K DPG FPW L G+G W+ P + +++
Sbjct: 164 HRVVGHSDVAPARKKDPGEKFPWRSLAAS-GVGLWVEPARIVPGPALKQGTEGD------ 216
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
+ + + L YGY V + V+ AF+ HF PE++ AD +T
Sbjct: 217 EVRLMQQALADYGYRVPVNGSYDHATTDVVTAFQRHF----RPEKVDGIADAST 266
>gi|148552999|ref|YP_001260581.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas wittichii RW1]
gi|148498189|gb|ABQ66443.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Sphingomonas
wittichii RW1]
Length = 241
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 43/229 (18%)
Query: 32 MSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ + L+LHYT + + A I T A SSHY+++E G+V+++VP++ R
Sbjct: 20 LPITMLVLHYTGMADAASAIARLTDPEAKV--SSHYLVAED-------GQVMRLVPEDRR 70
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG WR ++NS SIGI +VN G Y PF + Q+ L L DI S+
Sbjct: 71 AWHAGQSSWRGVTDVNSASIGIEIVNPG------HELGYRPFPKPQMDALIPLISDITSR 124
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPW---GKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
I+P V+GH+D+AP K DPG LF W GKL L +R+ +
Sbjct: 125 HPIEPANVVGHSDVAPRRKQDPGELFDWELLGKLGL-----------------ALRRPRH 167
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERI 256
P G FL L +GY+V ++ + + AF+ F PERI
Sbjct: 168 GLADPHWTPGG-FLLALDRFGYDV--SDGPAAVIAFQRRF----RPERI 209
>gi|89053710|ref|YP_509161.1| negative regulator of AmpC, AmpD [Jannaschia sp. CCS1]
gi|88863259|gb|ABD54136.1| negative regulator of AmpC AmpD [Jannaschia sp. CCS1]
Length = 227
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 19/172 (11%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
RDG+ + +++HYT + A + S+HY+I G V+ +VP++
Sbjct: 15 RDGLKPELVVIHYTAMPNCASAAKVLCDPAREV-SAHYLIGRD-------GDVLNLVPED 66
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
MRAWHAG G+WR ++NS SIGI L N G+ PF E + L L ++
Sbjct: 67 MRAWHAGKGEWRGAGDVNSRSIGIELDNDGLT----------PFSEPLMAALETLLPTVL 116
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
+ ++I P V+GH+D+APG K+DPG F W +L G+ W TV+A
Sbjct: 117 AAWRIGPDGVIGHSDMAPGRKIDPGRRFDWQRLAR-QGLAVWSQASGDTVDA 167
>gi|294011034|ref|YP_003544494.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium japonicum UT26S]
gi|292674364|dbj|BAI95882.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium japonicum UT26S]
Length = 232
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 119/255 (46%), Gaps = 50/255 (19%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
FP + ++D R + + L+LHYT + + A I S + S+HYV++E
Sbjct: 4 FPMIDTPSPNFDER-SLPISMLVLHYTGMVDAATAINWLASPESKV--SAHYVVTED--- 57
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G+VI++V + RAWHAG WR ++NS SIGI +VN G Y PF +
Sbjct: 58 ----GQVIRMVDEEKRAWHAGRAHWRGIDDINSASIGIEIVNPG------HEWGYRPFPD 107
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ +L L IV + KI ++GH+D+AP K DPG LFPWG+L
Sbjct: 108 AQMGSLIPLIHQIVQRHKITRGNIVGHSDVAPARKQDPGELFPWGQLA------------ 155
Query: 195 EMTVEAIVRKFKPARPYPRK------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFS 248
+ + A P P K G F+ L+ +GY+ I ++ + AF+ F
Sbjct: 156 ---------RLRLALPRPTKNLMDPHWSDGGFMLALERFGYD--IAEPQAAVVAFQRRF- 203
Query: 249 ANQNPERIYADITTE 263
PE I I E
Sbjct: 204 ---RPELIDGIIDGE 215
>gi|334345293|ref|YP_004553845.1| N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD
[Sphingobium chlorophenolicum L-1]
gi|334101915|gb|AEG49339.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sphingobium chlorophenolicum L-1]
Length = 232
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 50/255 (19%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
FP + ++D R + + L+LHYT + + A I S + S+HYV++E
Sbjct: 4 FPMIDTPSPNFDER-SLPISMLVLHYTGMIDAATAINWLASPESKV--SAHYVVTED--- 57
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G+VI++V ++ RAWHAG WR ++NS SIGI +VN G Y PF +
Sbjct: 58 ----GQVIRMVDEDKRAWHAGRAHWRGIDDINSASIGIEIVNPG------HEWGYRPFPD 107
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ +L L IV + KI ++GH+D+AP K DPG LFPWG+L
Sbjct: 108 VQMGSLIPLIHQIVQRHKITRGNIVGHSDVAPARKQDPGELFPWGQLA------------ 155
Query: 195 EMTVEAIVRKFKPARPYPRK------LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFS 248
+ + A P P K G F+ L+ +GY+ I ++ + AF+ F
Sbjct: 156 ---------RLRLALPRPTKNLMDPHWSDGGFMLALERFGYD--IAEPQAAVVAFQRRF- 203
Query: 249 ANQNPERIYADITTE 263
PE I I E
Sbjct: 204 ---RPELIDGIIDGE 215
>gi|260574590|ref|ZP_05842593.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacter sp. SW2]
gi|259023007|gb|EEW26300.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacter sp. SW2]
Length = 214
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 34/216 (15%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
M ++LHYT + A + S+HY+I+E G+V+ +VP+ +RA
Sbjct: 1 MLPDLVVLHYTAMPSCAEARDRLCDAATEV-SAHYLIAEN-------GEVLALVPEELRA 52
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG G W ++NS SIGI L N G PF Q+ L L D++ ++
Sbjct: 53 WHAGAGAWGSVSDVNSRSIGIELANSG----------SQPFAAPQMLALEALLADVMGRW 102
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
+I PQ ++GH+D+APG K DPGP F W +L G+ W ++ +E +
Sbjct: 103 QIAPQRLIGHSDMAPGRKGDPGPRFDWHRLA-RAGLSVW---PQVDLEDL---------- 148
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
P +D F L+ +GY +++ AF+ F
Sbjct: 149 PSMVDTAAFHAALRGFGY--PDLAPETLLAAFRLRF 182
>gi|182679306|ref|YP_001833452.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182635189|gb|ACB95963.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 304
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 112/233 (48%), Gaps = 35/233 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH D R G +ILH+T + A + S+HY++ E G++ Q
Sbjct: 31 NHGD-RKGRQPDAIILHHTAMVSGEAALLRLCDPAAEV-SAHYLVWED-------GRISQ 81
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V + RAWHAG W +R++NS+SIGI LV+ G G P++E QI L
Sbjct: 82 LVAEKHRAWHAGQSYWAGERDMNSVSIGIELVHPGPEG------GSPPYEEAQIAATIAL 135
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
DI+ + I VLGH DIAP K DP FPW +L G+G ++ P + VE
Sbjct: 136 CLDIMRRRSIPAARVLGHCDIAPDRKDDPSAHFPWAQLAA-AGVGLYVPPSPI-VEG--- 190
Query: 204 KFKPARPYPRKLDRGIFLE----LLKAYGYNVTITN-----KRSVIRAFKTHF 247
P + + G +E LL GY ++ITN +V+RAF+ H+
Sbjct: 191 ------PRHQNGEHGQHIETLQSLLAILGYGLSITNLYGMKTEAVVRAFQRHY 237
>gi|312130554|ref|YP_003997894.1| N-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd
[Leadbetterella byssophila DSM 17132]
gi|311907100|gb|ADQ17541.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Leadbetterella byssophila DSM 17132]
Length = 266
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 39/226 (17%)
Query: 36 YLILHYTVYNFA-HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+++H+T N I F R SSHYV+ GKV+Q+V D +RA HA
Sbjct: 68 YVLIHHTAQNSTEQTIRTFQLERT--AVSSHYVVGR-------DGKVVQMVNDYVRAHHA 118
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+GKW D +LNS SIGI + N G P+ E QI L L K + + KI
Sbjct: 119 GLGKWGNDTDLNSSSIGIEMDNNGTTD---------PWPEVQIQALIELLKVLKERHKIP 169
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+ LGH D AP K+DP FPW +L + G G W D +E F P
Sbjct: 170 QKNFLGHADYAPNRKIDPYK-FPWKQLAKE-GFGCWYEED---LETPPGNFDP------- 217
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADI 260
L L+ GY+ I+N ++ IRAFK H+ + N E +D+
Sbjct: 218 ------LLALRVIGYD--ISNPQNAIRAFKLHYIQDDNSELKDSDL 255
>gi|390168472|ref|ZP_10220431.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium indicum B90A]
gi|389588891|gb|EIM66927.1| N-acetylmuramoyl-L-alanine amidase [Sphingobium indicum B90A]
Length = 232
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 121/253 (47%), Gaps = 46/253 (18%)
Query: 16 FPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
FP + ++D R + + L+LHYT + + A I S + S+HYV++E
Sbjct: 4 FPMIDTPSPNFDER-SLPISMLVLHYTGMVDAATAINWLASPESKV--SAHYVVTED--- 57
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G+VI++V + RAWHAG WR ++NS SIGI +VN G Y PF +
Sbjct: 58 ----GQVIRMVDEEKRAWHAGRAHWRGIDDINSASIGIEIVNPG------HEWGYRPFPD 107
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ +L L IV + KI ++GH+D+AP K DPG LFPWG+L
Sbjct: 108 AQMGSLIPLIHQIVQRHKITRGNIVGHSDVAPARKQDPGELFPWGQL------------- 154
Query: 195 EMTVEAIVRKFKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
A +R P RP +D G F+ L+ +GY+ I ++ + AF+ F
Sbjct: 155 -----ARLRLALP-RPTRNLMDPHWSDGGFMLALERFGYD--IAEPQAAVVAFQRRF--- 203
Query: 251 QNPERIYADITTE 263
PE I I E
Sbjct: 204 -RPELIDGIIDGE 215
>gi|49474537|ref|YP_032579.1| hypothetical protein BQ09900 [Bartonella quintana str. Toulouse]
gi|49240041|emb|CAF26464.1| hypothetical protein BQ09900 [Bartonella quintana str. Toulouse]
Length = 319
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 134/308 (43%), Gaps = 82/308 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
+++L++HYT NF I A T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 IRFLVMHYTAINFKESIAALTGMQV----SAHYLVPDPLEQTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIG-------------------------------IHLVNG 117
RAWHAG+ W NLN SIG IH G
Sbjct: 75 ERAWHAGVSSWAGRNNLNDTSIGIEIVNLATSHSDCSEETDAEVALKDVRFSNPIHESGG 134
Query: 118 GV---VGEKFRSTN----------------------YYPFDENQIHTLGLLGKDIVSQF- 151
+ +G + N + P++ QI + L +++ ++
Sbjct: 135 ALQANIGSLAKGNNMGGTALPYHAVNLVPCNNEVFTFPPYNPTQIDAVKELALNVLQRYP 194
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+GH+DIA G K DPG FPW +LY+ GIGAW D+ E R+F +
Sbjct: 195 DIMPTDVVGHSDIAIGRKSDPGAAFPWKELYV-AGIGAWY--DDELKEHYQRQF--CESF 249
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKR----SVIRAFKTHFSANQNPERIYADITTEDMFW 267
P K D + L+ YGY+ + +IRAF+ HF +N + I D+ T +
Sbjct: 250 PSKAD---IVTKLRCYGYDTSAAGSEIGYNELIRAFQLHFR-QENYDGIL-DVETAAII- 303
Query: 268 AWALVAKY 275
+ALV KY
Sbjct: 304 -YALVDKY 310
>gi|374292530|ref|YP_005039565.1| N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan
binding domain [Azospirillum lipoferum 4B]
gi|357424469|emb|CBS87348.1| N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan
binding domain [Azospirillum lipoferum 4B]
Length = 235
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 105/234 (44%), Gaps = 47/234 (20%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH +G V+ LILHYT A + A + S+HY + E G V
Sbjct: 13 NHGPRAEGARVELLILHYTGMPTAADALDRLCDPAAQV-SAHYTVDED-------GTVYA 64
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
VP++ RAWHAG W ++NS SIG+ +VN G +F Y PF Q+ + L
Sbjct: 65 HVPEDRRAWHAGRSSWGGVEDVNSRSIGVEIVN---PGHEF---GYRPFPPVQMAAVAEL 118
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ IV + I P VLGH+D+AP K DPG LF W L GIG W
Sbjct: 119 CRGIVERHGIAPADVLGHSDVAPSRKEDPGELFDWPGLATQ-GIGLW------------- 164
Query: 204 KFKPARPYPRKLDRGIFLE----------LLKAYGYNVTITNKRSVIRAFKTHF 247
P P + D G F + LL YGY+ R+++ AF+ HF
Sbjct: 165 ------PTPSQADEGSFTDAPVTGAEVAALLGRYGYDP--AEPRALL-AFQRHF 209
>gi|332185895|ref|ZP_08387642.1| N-acetylmuramoyl-L-alanine amidase family protein [Sphingomonas sp.
S17]
gi|332014253|gb|EGI56311.1| N-acetylmuramoyl-L-alanine amidase family protein [Sphingomonas sp.
S17]
Length = 229
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 44/252 (17%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D R + + ++LHYT A A + + S HY+++E G V+++
Sbjct: 10 NFDVR-SLPISMIVLHYTGMQDAESAIARLRDPEAKV-SCHYLVAED-------GTVLRM 60
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
V + RAWHAG WR ++NS SIGI +VN G Y PF + QI + L
Sbjct: 61 VAEEDRAWHAGQSHWRSIEDVNSASIGIEIVNPG------HDWGYRPFPDEQIAAVMELV 114
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRK 204
DI + I ++GH+DIAP K DPG LFPWG L R+
Sbjct: 115 ADIQKRHGITRGNIVGHSDIAPARKRDPGELFPWGALAR-------------------RR 155
Query: 205 FKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADI 260
RP +D F L+ +GY+V T++ + I AF+ F PE I +I
Sbjct: 156 LALPRPTKNLMDPMWTEAGFCLALERFGYDV--TDRMAAIMAFQRRF----RPELIDGEI 209
Query: 261 TTEDMFWAWALV 272
E AL+
Sbjct: 210 DAECRMILLALL 221
>gi|94495515|ref|ZP_01302095.1| negative regulator of AmpC, AmpD [Sphingomonas sp. SKA58]
gi|94424903|gb|EAT09924.1| negative regulator of AmpC, AmpD [Sphingomonas sp. SKA58]
Length = 232
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 116/251 (46%), Gaps = 44/251 (17%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P E ++D R V L+LHYT A A+ ++ + S+HYV+ E
Sbjct: 5 PMIETPSPNFDERTS-PVSMLVLHYTGMRDAQSAVAWLASPESKV-SAHYVVCED----- 57
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G++I++V + RAWHAG WR ++NS SIGI +VN G Y PF + Q
Sbjct: 58 --GQIIRMVDEAKRAWHAGPSHWRGINDVNSASIGIEIVNPG------HEWGYRPFPQAQ 109
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I L L DIV + I ++GH+D+AP K DPG LFPWG+L
Sbjct: 110 IGALIPLIHDIVQRHGITRGNIVGHSDVAPARKQDPGELFPWGQL--------------- 154
Query: 197 TVEAIVRKFKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQN 252
A +R P RP +D FL L+ +GY+ I ++ + AF+ F
Sbjct: 155 ---ARLRLALP-RPTRNLMDPLWTDSAFLLALERFGYD--IAEPQAAVIAFQRRF----R 204
Query: 253 PERIYADITTE 263
PE I I E
Sbjct: 205 PELIDGVIDGE 215
>gi|341616034|ref|ZP_08702903.1| N-acetylmuramoyl-L-alanine amidase [Citromicrobium sp. JLT1363]
Length = 244
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E+ +YD RD V +++HYT A ++ + S+HY+ISE G
Sbjct: 18 ERLSPNYDERDA-PVSMVVVHYTEMESADAALERLTDPESKV-SAHYLISE-------AG 68
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+V ++VP+ RAWHAG+ WR + ++N++S+GI L + G KF Y F + QI
Sbjct: 69 EVTRLVPEEKRAWHAGVSYWRGEADVNAVSVGIELDHP---GHKF---GYREFADAQIAA 122
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L L IV ++ + V+GH+D+AP K+DPG LFPW ++ + G+
Sbjct: 123 LVPLLHAIVKRYDVPRANVVGHSDVAPQRKIDPGELFPWARI-AELGL------------ 169
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQ 251
I R K P D +L L + YGY+V ++ R + AF+ + Q
Sbjct: 170 CIPRPTKLELGDPFDNDSAFYLALER-YGYDV--SDGRKAVEAFQRRWRPEQ 218
>gi|294678272|ref|YP_003578887.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
capsulatus SB 1003]
gi|294477092|gb|ADE86480.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
capsulatus SB 1003]
Length = 229
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N + R G + ++LHYT + + A + S+H++I+E G+V
Sbjct: 9 NFGERRGGAQPELIVLHYTGMESCAVARDRLCDPAAEV-SAHWLIAED-------GRVEA 60
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ +RAWHAG G W ++NS SIGI L N T PF E Q+ L L
Sbjct: 61 LVPERLRAWHAGAGGWMGQADVNSRSIGIELAN----------TGDAPFPEPQMAALERL 110
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+I +++ + P+ V+ H+D APG K+DPGP F W +L + W +P
Sbjct: 111 LPEIFARWGLGPEAVIAHSDCAPGRKIDPGPRFDWARLA-RQDLAIWPAP--------AG 161
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ P P FL L + +GY + ++ AF+ F
Sbjct: 162 RLPPVTPE-------AFLALAETFGYPEAPFD--VLLSAFRLRF 196
>gi|403530827|ref|YP_006665356.1| hypothetical protein RM11_0928 [Bartonella quintana RM-11]
gi|403232898|gb|AFR26641.1| hypothetical protein RM11_0928 [Bartonella quintana RM-11]
Length = 319
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 134/308 (43%), Gaps = 82/308 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEK-EGKYLPGG----KVIQIVPDN 88
+++L++HYT NF I A T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 IRFLVMHYTAINFKESIAALTGMQV----SAHYLVPDPLEQTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIG-------------------------------IHLVNG 117
RAWHAG+ W NLN SIG IH G
Sbjct: 75 ERAWHAGVSSWAGRNNLNDTSIGIEIVNLATSHSDCSEETDAEVALKDVRFSNPIHESGG 134
Query: 118 GV---VGEKFRSTN----------------------YYPFDENQIHTLGLLGKDIVSQF- 151
+ +G + N + P++ QI + L +++ ++
Sbjct: 135 ALQANIGSLAKGNNMGDTALPYHAVNLVPCNNEVFTFPPYNPTQIDAVKELALNVLQRYP 194
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+GH+DIA G K DPG FPW +LY+ GIGAW D+ E R+F +
Sbjct: 195 DIMPTDVVGHSDIAIGRKSDPGAAFPWKELYV-AGIGAWY--DDELKEHYQRQF--CESF 249
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKR----SVIRAFKTHFSANQNPERIYADITTEDMFW 267
P K D + L+ YGY+ + +IRAF+ HF +N + I D+ T +
Sbjct: 250 PSKAD---IVTKLRCYGYDTSAAGSEIGYNELIRAFQLHFR-QENYDGIL-DVETAAII- 303
Query: 268 AWALVAKY 275
+ALV KY
Sbjct: 304 -YALVDKY 310
>gi|387894829|ref|YP_006325126.1| N-acetylmuramoyl-L-alanine amidase domain-containing protein
[Pseudomonas fluorescens A506]
gi|387159565|gb|AFJ54764.1| N-acetylmuramoyl-L-alanine amidase domain protein [Pseudomonas
fluorescens A506]
Length = 257
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 120/236 (50%), Gaps = 34/236 (14%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R G SV+ +I+HYT FA + T + S+HY++ + E Y G +
Sbjct: 13 FNDRRGESVQQVIVHYTAAPFASSLRTLTQDGV----SAHYLLPDPDEPSYCAAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYYPFDEN 135
V ++V + RAWHAG+ W +LNS S+GI +VN GV F T Y P
Sbjct: 69 VFRLVDEGQRAWHAGVSYWAGKADLNSRSVGIEIVNLARDDAGV----FTFTQYAP---A 121
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L +D++ ++ ++ P LGH+D+A K DPGP PW +L + GIGAW D
Sbjct: 122 QIDLLIALLRDLLERYPQVGPTDWLGHSDVAYWRKSDPGPRLPW-RLLHEAGIGAWF--D 178
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV---IRAFKTHF 247
E T E R+F P +++R + YGY N+R+ RAF+ HF
Sbjct: 179 EQTREMYQRRFCLGLPPEVEVERA-----FQRYGYK-PAQNRRAFEQRTRAFQMHF 228
>gi|380509729|ref|ZP_09853136.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas sacchari NCPPB
4393]
Length = 266
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 50/262 (19%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH---SSHYVISE 70
+P W + N YD+R + +++HYT + + + + R+HN S+HY+I
Sbjct: 34 NPLATWVPSPN-YDARRPI---LIVIHYT--DQHSVQQSLDTLRSHNSKGKVSAHYLIGR 87
Query: 71 KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY 130
+Y Q+V D RAWH G G+W ++NS SIGI L N G
Sbjct: 88 DGTRY-------QLVADQDRAWHGGAGRWGTITDINSASIGIELDNDGKT---------- 130
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
PF + QI +L +L +D+ ++ +I V+GH D AP K+DPGPLFPW +L + G G W
Sbjct: 131 PFAQEQIASLLVLLEDLCTRLRIPRTQVVGHEDFAPSRKVDPGPLFPWKRL-AEAGFGRW 189
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
+ F P + L GY V ++ + +RAF H+ N
Sbjct: 190 PA---ADTPPAPPGFDP-------------WQALALIGYPV--DDRAATLRAFHHHYRGN 231
Query: 251 QNPERIYADITTEDMFWAWALV 272
D ED+ +AL
Sbjct: 232 DA-----TDFDAEDLRILYALT 248
>gi|421601712|ref|ZP_16044462.1| amidase [Bradyrhizobium sp. CCGE-LA001]
gi|404266188|gb|EJZ31118.1| amidase [Bradyrhizobium sp. CCGE-LA001]
Length = 287
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 108/243 (44%), Gaps = 54/243 (22%)
Query: 24 NHYDSRDGMSVKYLILHYTVY-----NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
NH + G ++LHYT A + TA T S+HYV+ E
Sbjct: 46 NHGERNKGRQPDMIVLHYTGMPDVEGALARLCTAGTEV------SAHYVVLED------- 92
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP+ RAWHAG+ W + ++NS SIGI ++N G Y + QI
Sbjct: 93 GRIVQCVPEAKRAWHAGVSSWAGEDDINSCSIGIEIINRG------HDWGYPEYPLRQIA 146
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM-- 196
+ L + I+ + K+ VLGH+D+AP K DPG FPW L + G+G W++P +
Sbjct: 147 AVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLA-NSGVGHWVTPAPVVR 205
Query: 197 -------TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFK 244
T+ V + A L YGY V + K V+ AF+
Sbjct: 206 GESLMLGTISDAVLSMQQA---------------LARYGYGVPLNGKYDAATMEVVTAFQ 250
Query: 245 THF 247
HF
Sbjct: 251 RHF 253
>gi|154245840|ref|YP_001416798.1| N-acetylmuramoyl-L-alanine amidase [Xanthobacter autotrophicus Py2]
gi|154159925|gb|ABS67141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Xanthobacter
autotrophicus Py2]
Length = 265
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 13 IDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+ P P + R D L+LHYT A A + S HYV+ E
Sbjct: 23 LAPSPNFGPRRAKLD--------MLVLHYTGMASADAAIELLRTPASEV-SCHYVVRED- 72
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G V+Q+V + RAWHAG W + NS SIGI +VNGG F
Sbjct: 73 ------GSVVQMVAEAARAWHAGRSSWEGVTDTNSRSIGIEIVNGG------HDYGLPDF 120
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI + L DIV++ I+ VL H+D+AP K DPG FPWG L+ GIG +
Sbjct: 121 PAVQIAAVIALSADIVARHAIRADRVLAHSDVAPARKRDPGENFPWGALHA-AGIGHLVP 179
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
P + P +L YGY + +T+ V+ AF+ HF
Sbjct: 180 PSRVEGGRFFMLGDAGEPV------AALKAMLALYGYGIELTDAYDAETADVVAAFQRHF 233
>gi|296284604|ref|ZP_06862602.1| N-acetylmuramoyl-L-alanine amidase [Citromicrobium bathyomarinum
JL354]
Length = 244
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 45/239 (18%)
Query: 13 IDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+D E+ +YD R+ V ++LHYT A ++ + S+HY+ISE
Sbjct: 11 MDELVHAERLSPNYDERNA-PVSMVVLHYTEMEGADAAIERLTDPEAKV-SAHYIISE-- 66
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G+V ++VP+ RAWHAG+ WR + ++N++S+GI L + G + Y F
Sbjct: 67 -----AGEVTRLVPEEKRAWHAGVSYWRGETDVNTVSVGIELDHPG------HAYGYRKF 115
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
+ QI L L IV ++ I V+GH+D+AP K DPG LFPW ++ +G L
Sbjct: 116 ADAQIAALVPLLARIVERYDIPRANVVGHSDVAPQRKTDPGELFPWARI---AQLGLCL- 171
Query: 193 PDEMTVEAIVRKFKPARPYPRKLD-------RGIFLELLKAYGYNVTITNKRSVIRAFK 244
P P KL+ G F L+ +GY+ I++ R V+ AF+
Sbjct: 172 -----------------PRPTKLELGDPFDNDGAFYLALERFGYD--ISDGRKVVEAFQ 211
>gi|399090068|ref|ZP_10753907.1| negative regulator of beta-lactamase expression [Caulobacter sp.
AP07]
gi|398028465|gb|EJL21976.1| negative regulator of beta-lactamase expression [Caulobacter sp.
AP07]
Length = 239
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 25 HYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQI 84
++D+R + ++LHYT A + + S+HY++ E G V ++
Sbjct: 10 NFDARKSVP-DCVVLHYTGMQSGAAALARMRDPEAKV-SAHYMVDED-------GAVYRL 60
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLG 144
VP+ RAWHAG W+ +++NS SIGI +VN G Y PF + Q+ + L
Sbjct: 61 VPEERRAWHAGAAFWKGVKDINSASIGIEIVNPG------HEFGYRPFPDAQVAAVINLL 114
Query: 145 KDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
DI S++ I +LGH+DIAPG K+DPG LFPW +L + G G W+ P
Sbjct: 115 ADIRSRWTIDDDRILGHSDIAPGRKIDPGELFPWKRL-AEAGHGLWVEP 162
>gi|395788305|ref|ZP_10467869.1| hypothetical protein ME7_01204 [Bartonella birtlesii LL-WM9]
gi|395408222|gb|EJF74833.1| hypothetical protein ME7_01204 [Bartonella birtlesii LL-WM9]
Length = 314
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 135/308 (43%), Gaps = 82/308 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT +F + A T S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTSLDFKESVMALTGENV----SAHYLVPDPSEKTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHL---------------------------------- 114
RAWHAG+ W NLN SIGI +
Sbjct: 75 KRAWHAGMSSWAGRNNLNDTSIGIEIVNLANGDTDFSEQAYVKAILKDVRVLNPVNKDES 134
Query: 115 --------------VNG--------GVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF- 151
VNG +V R + ++ QI + L +I+ ++
Sbjct: 135 ELQTDVCLWTEGSDVNGTALQLEKVNLVTYNHRGFTFPSYNPTQIDAVKELALNILQRYP 194
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+GH+DIA G K DPG FPW +LY+ GIGAW D+ +F + +
Sbjct: 195 DIMPTDVVGHSDIAIGRKSDPGAAFPWKELYM-AGIGAWY--DDERKGYYQEQF--CKSF 249
Query: 212 PRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTEDMFW 267
P K D L LK YGY++++ +++IRAF+ HF +N + I DI T +
Sbjct: 250 PTKED---ILTKLKCYGYDISVACTEIGYKNLIRAFQLHFR-QENYDGI-LDIETAAII- 303
Query: 268 AWALVAKY 275
+ALV KY
Sbjct: 304 -YALVDKY 310
>gi|87201063|ref|YP_498320.1| negative regulator of AmpC, AmpD [Novosphingobium aromaticivorans
DSM 12444]
gi|87136744|gb|ABD27486.1| negative regulator of AmpC, AmpD [Novosphingobium aromaticivorans
DSM 12444]
Length = 234
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 110/248 (44%), Gaps = 55/248 (22%)
Query: 15 PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
P P W + + + V ++LHYT A + A + S+HY+I E
Sbjct: 11 PSPNWNERK--------LPVSMVVLHYTGMETADAALERLCDPAAEV-SAHYMIDED--- 58
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G V Q+V + RAWHAG WR ++NS SIGI LVN G Y PF +
Sbjct: 59 ----GTVTQLVDEEKRAWHAGRSSWRGITDVNSASIGIELVNPG------HEFGYRPFPD 108
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI L L DIV + I V+GH+D+AP K DPG LFPW
Sbjct: 109 AQIEALLPLLADIVKRHDIPRANVVGHSDVAPARKDDPGELFPW---------------- 152
Query: 195 EMTVEAIVRKFKPARPYPRKLDR------GIFLELLKAYGYNVTITNKRSVIRAFKTHFS 248
++ + + P P+ R G F L+ +GY+ IT+ + +RAF+ +
Sbjct: 153 -----ELLARHRLCLPTPKLSMRLLYDNEGAFFLALERFGYD--ITDPPAAVRAFQRRW- 204
Query: 249 ANQNPERI 256
P+RI
Sbjct: 205 ---RPQRI 209
>gi|365961607|ref|YP_004943174.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium columnare ATCC
49512]
gi|365738288|gb|AEW87381.1| N-acetylmuramoyl-L-alanine amidase [Flavobacterium columnare ATCC
49512]
Length = 300
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + + FT A S+HYVI++ GKV+Q++ D +RAWHA
Sbjct: 102 FVIIHHTAQDSLKQTLKTFT--LASTNVSAHYVIAK-------DGKVVQMLNDYLRAWHA 152
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G G W R+ ++NS SIGI L N G+ PF QI++L L + + I
Sbjct: 153 GSGAWGRNSDINSASIGIELDNNGL----------KPFSVQQINSLLALLTKLKKDYNIP 202
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
Q +GH+DIAP K+DP LFPW +L + G G W PD P P
Sbjct: 203 TQNFIGHSDIAPTRKVDPSALFPW-QLLAEKGFGIW--PDA-----------PLETAPAD 248
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ + L ++ GY+ N + I+AFK H+
Sbjct: 249 FNPEMALRII---GYDT--KNLSAAIKAFKLHY 276
>gi|197105795|ref|YP_002131172.1| N-acetylmuramoyl-L-alanine amidase [Phenylobacterium zucineum HLK1]
gi|196479215|gb|ACG78743.1| N-acetylmuramoyl-L-alanine amidase [Phenylobacterium zucineum HLK1]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT + + SSHY++ E G+V ++VP+ RAWHAG+
Sbjct: 30 IVLHYTGMETGQAALDRLRDPEAKV-SSHYLVEED-------GRVFRLVPEERRAWHAGV 81
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W+ RNLN SIG+ +VN G Y PF E Q+ + L DI S++ I+
Sbjct: 82 SFWKGQRNLNDTSIGVEIVNPG------HEFGYRPFPEPQVEAVIALLADIRSRWMIEDG 135
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
++GH+DIAP K+DPG LFPW +L G G W
Sbjct: 136 RIVGHSDIAPDRKIDPGELFPWKRLA-QAGHGLW 168
>gi|99081757|ref|YP_613911.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ruegeria sp. TM1040]
gi|99038037|gb|ABF64649.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ruegeria sp. TM1040]
Length = 219
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG+ ++LHYT A + A + S+HY+I
Sbjct: 6 PIWHPSPNFGARRDGLQPHLIVLHYTAMESAEAALQRLCDPAFEV-SAHYLIGGD----- 59
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G++ Q+V ++ RAWHAG G+W ++NS SIGI L N G +PF E Q
Sbjct: 60 --GRLWQMVAEDHRAWHAGQGEWAGLSDINSRSIGIELDNRG----------DHPFSEPQ 107
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY---LDYGIGAWLSP 193
+ L L I++++ I V+GH+D+APG K DPGP F W +L L G L+
Sbjct: 108 MCVLETLMAQIMTRWTIPATGVIGHSDMAPGRKWDPGPRFDWQRLATLGLARPNGQPLAA 167
Query: 194 DEMTVEAIVRKFKPARPYPRKLDRGIFLELLK 225
T EA+ RK A + ++D L+ ++
Sbjct: 168 PAATPEAL-RKAAQACGFTAEVDDATLLQAVR 198
>gi|254456008|ref|ZP_05069437.1| probable N-acetylmuramoyl-L-alanine amidase YbjR [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083010|gb|EDZ60436.1| probable N-acetylmuramoyl-L-alanine amidase YbjR [Candidatus
Pelagibacter sp. HTCC7211]
Length = 248
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 24/239 (10%)
Query: 29 RDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
R VK++I HYT + IT T++++ SSHY+I G+++ +VPD
Sbjct: 21 RRVKEVKFIIFHYTGMKKENQAITRLTNSKSK--VSSHYLIKN-------NGEILTLVPD 71
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AWHAGI W+ +++N SIGI + N G +Y F + Q+ ++ L +
Sbjct: 72 LYVAWHAGISSWKNYKSINKYSIGIEISNPG------HEYSYKKFSKEQVKSIIKLSTYL 125
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+ ++ IKP ++LGH+DIAP K DPG FPW L + IG W + +E + FK
Sbjct: 126 IKKYNIKPNFILGHSDIAPDRKKDPGEKFPWKYLSKN-KIGHWHNLNEKKI------FKK 178
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTIT-NKRSVIRAFKTHFSANQNPERIYADITTEDM 265
K ++ F++ L GY I NK + T F E + I E +
Sbjct: 179 RNLTEGKKEKIKFIKNLYEIGYPKNILFNKYKYSKLLTTAFQRRFRQELVNGIIDQECL 237
>gi|346993813|ref|ZP_08861885.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ruegeria sp. TW15]
Length = 223
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG+ ++LHYT A + + S+HY+I
Sbjct: 9 PIWHPSPNFGPRRDGLKPALIVLHYTAMESASAALERLCDPGPEV-SAHYLIGGN----- 62
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G++ Q+V + RAWHAG G+W+ ++NS SIGI L N G +PF E Q
Sbjct: 63 --GELWQLVREEDRAWHAGAGEWQGQTDINSRSIGIELDNRG----------DHPFSEPQ 110
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
++ L L ++ ++ I P+ ++GH+D+APG K DPGP F W + L+ A S E
Sbjct: 111 MNALEQLLSKLMRRWSIPPEGIIGHSDMAPGRKTDPGPRFDWQR--LERQSLAAPSGTEA 168
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLK 225
+ R R Y +D I L+ ++
Sbjct: 169 PSGSTFRALAQVRGYTADVDDDILLKTIR 197
>gi|316933177|ref|YP_004108159.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris DX-1]
gi|315600891|gb|ADU43426.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodopseudomonas palustris DX-1]
Length = 288
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 37 LILHYTVYNFAHIITAFTS-NRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + A T +A S+HYV+ E G+++Q VP++ RAWHAG
Sbjct: 59 IVLHYT--GMPDVEGALTRLCKAGTEVSAHYVVLED-------GRILQCVPESKRAWHAG 109
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
+ W + ++NS SIGI ++N G Y + QI + L + I+ + +
Sbjct: 110 VASWAGEEDINSCSIGIEIINRG------HDWGYPDYPLRQIAAVIALCRGIILRRDVPA 163
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
++GH+D+AP K DPG FPW L G+G W+ P + +++
Sbjct: 164 HRIVGHSDVAPARKKDPGEKFPWRSLAAS-GVGLWVEPARIVPGPALKQGTEGE------ 216
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
+ + + L YGY V ++ V+ AF+ HF PE++ AD +T
Sbjct: 217 EVRLMQQALADYGYRVPVSGSYDHATADVVTAFQRHF----RPEKVDGIADAST 266
>gi|389874487|ref|YP_006373843.1| negative regulator of AmpC, AmpD [Tistrella mobilis KA081020-065]
gi|388531667|gb|AFK56861.1| negative regulator of AmpC, AmpD [Tistrella mobilis KA081020-065]
Length = 263
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 117/263 (44%), Gaps = 53/263 (20%)
Query: 8 MPGYVIDPFPEWEK-------NRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN 60
M + D FPE + + NH DG ++LHYT A + + ++ A
Sbjct: 1 MSAQIADHFPELARFPLADRPSPNHDARPDGARPDMVVLHYTGMPTAEVAIDWLADPASR 60
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+ S+H+V+ E G++ ++VP++ RAWHAG+ WR LN +SIGI +VN G
Sbjct: 61 V-SAHWVVEED-------GRITRMVPEDRRAWHAGVSWWRGRERLNDVSIGIEIVNPG-- 110
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
Y F E Q+ + L I+++ I P V+GH+DIAP K DPG F W +
Sbjct: 111 ----HEWGYRDFPEPQMQAVEALLGGILARHDIAPARVVGHSDIAPARKYDPGERFDWYR 166
Query: 181 LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL-------DRGIFL----ELLKAYGY 229
L G L P RP P ++ D G + L A GY
Sbjct: 167 LAAK---GLALMPAN-------------RPVPGEMGLTLGEGDTGQAVTDIQRALAAIGY 210
Query: 230 NVTITN-----KRSVIRAFKTHF 247
+ + RSV+ AF++ F
Sbjct: 211 RIQVDGIYDLVTRSVVHAFQSRF 233
>gi|365898422|ref|ZP_09436381.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. STM
3843]
gi|365420807|emb|CCE08923.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with
peptidoglycan binding domain [Bradyrhizobium sp. STM
3843]
Length = 258
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 37 LILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
++LHYT + IT + + S+HY++ E G+++Q VP+ RAWHAG
Sbjct: 32 ILLHYTGMPEVEAAITKLCTTGSDV--SAHYIVLED-------GRIVQSVPEAKRAWHAG 82
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKP 155
W + ++NS SIGI + N G Y F QI + L + I+ + I P
Sbjct: 83 TSSWAGEEDINSCSIGIEIANRG------HEWGYPDFPSRQIAAVIALCRGIMLRRTIPP 136
Query: 156 QYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKL 215
VLGH+D+AP K DPG FPW L + G+G W+ P A ++ + +
Sbjct: 137 HRVLGHSDVAPARKKDPGEKFPWHSL-ANSGVGHWVQP------APIKSGRSLKLGSIGD 189
Query: 216 DRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
D + L YGY V I+ K V+ AF+ HF
Sbjct: 190 DVRDMQKALAKYGYGVPISGKFDGTTMEVVTAFQRHF 226
>gi|299131934|ref|ZP_07025129.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Afipia sp. 1NLS2]
gi|298592071|gb|EFI52271.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Afipia sp. 1NLS2]
Length = 257
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 112/244 (45%), Gaps = 42/244 (17%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFA-----HIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
N + + G ++LHYT + A + TA T S+HYV+ E
Sbjct: 19 NFNERKAGRQPDMIVLHYTGMSDASSALKRLCTAGTEV------SAHYVVMED------- 65
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G +IQ V ++ RAWHAG W D ++NS SIGI +VN G Y F Q+
Sbjct: 66 GNIIQCVRESHRAWHAGTSSWDGDSDVNSASIGIEIVNPG------HDLGYPDFPLRQVA 119
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
+ L K I+ + K+ VL H+D+AP K DPG FPW +L D G+G W+ P +T
Sbjct: 120 AVIALCKGIMLRRKVPKHRVLAHSDVAPARKKDPGEKFPW-RLLADSGVGHWVEPAPLTH 178
Query: 199 EAIVRKFKPARPYPRKLDRGIFLE-LLKAYGYNVTITNK-----RSVIRAFKTHFSANQN 252
RKF D + L+ L YGY V + + + AF+ HF
Sbjct: 179 SD--RKF-----LGTTSDEIMALQRALVRYGYPVLPSGQYDGVTMDAVAAFQRHF----R 227
Query: 253 PERI 256
PER+
Sbjct: 228 PERV 231
>gi|390451847|ref|ZP_10237412.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor aquibiodomus RA22]
gi|389660481|gb|EIM72160.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Nitratireductor aquibiodomus RA22]
Length = 234
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 21/197 (10%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
RDG LILHYT + A + SSHY++ E G+++Q+V +
Sbjct: 30 RDGQKPDALILHYTGMETGESAQDWLCA-AESEVSSHYLVHED-------GRIVQMVREA 81
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG G W+ ++NS SIG+ + N G N F E QI + LG DI
Sbjct: 82 DRAWHAGRGSWQGRDDVNSWSIGVEIANAG------HPQNLPDFPEVQIKAVLELGLDIC 135
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW--LSPDEMTV----EAIV 202
+ +I + VL H+DIAPG K+DPG FPW +L G+G + ++P V A
Sbjct: 136 RRHRILAKRVLAHSDIAPGRKVDPGEKFPWQRLAA-AGLGHFVAIAPSREGVFSVPTAAD 194
Query: 203 RKFKPARPYPRKLDRGI 219
R F P+R D G+
Sbjct: 195 RPFWPSRDCFSATDTGL 211
>gi|395793067|ref|ZP_10472476.1| hypothetical protein MEI_01097 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713610|ref|ZP_17687870.1| hypothetical protein ME1_00616 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395422237|gb|EJF88445.1| hypothetical protein ME1_00616 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395431905|gb|EJF97911.1| hypothetical protein MEI_01097 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 317
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 132/306 (43%), Gaps = 80/306 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT NF + A T + S HY++ + E Y G ++ +V +N
Sbjct: 19 VRFLVMHYTSLNFKESVMALTGEKV----SVHYLVPDPSEQTYREAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKWRR------------------------------------------DRNLN 106
RAWHAG+ W D++ N
Sbjct: 75 ERAWHAGVSSWAEHSNLNDTSIGIEIVNLATGHSASSEKMYVETSLKDMRVLKSIDKDEN 134
Query: 107 SMSIGIHLVNGGVVGEK--------FRSTN----YYPFDENQIHTLGLLGKDIVSQF-KI 153
+ +G N V F N + P++ QI + L +I+ ++ I
Sbjct: 135 ELQVGSWTKNRNVSSTVLPFERDYFFTCQNEDLIFPPYNPTQIDAVKELALNILQRYPDI 194
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P V+GH+DIA G K+DPG FPW +LYL GIGAW DE + +F + +P
Sbjct: 195 TPTDVVGHSDIAIGRKIDPGAAFPWKELYL-AGIGAWY--DEERKQHYQEQF--CKNFPS 249
Query: 214 KLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
K D L LK YGY+++I +++IRAF+ HF +N + I + E +
Sbjct: 250 KED---VLAKLKCYGYDISIACSEIGYKNLIRAFQLHFR-QENYDGI---LDVETAAIVY 302
Query: 270 ALVAKY 275
ALV KY
Sbjct: 303 ALVDKY 308
>gi|423692720|ref|ZP_17667240.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
SS101]
gi|387997406|gb|EIK58735.1| N-acetylmuramoyl-L-alanine amidase AmiD [Pseudomonas fluorescens
SS101]
Length = 255
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 32/235 (13%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R G +V+ ++LHYT FA + T + S+HY++ + E Y G +
Sbjct: 13 FNDRRGETVQQVVLHYTASPFASSLRTLTQDGV----SAHYLLPDPDEPSYRAAGYEELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVN-----GGVVGEKFRSTNYYPFDEN 135
V ++V + RAWHAG+ W +LNS S+GI +VN GV F Y P
Sbjct: 69 VFRLVDEGQRAWHAGVSYWAGKADLNSRSMGIEIVNLARDDAGV----FTFPEYAP---A 121
Query: 136 QIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
Q+ L L +D++ ++ ++ P LGH+D+A K DPGP PW L+ + GIGAW D
Sbjct: 122 QVDVLIELLRDLLERYPQVGPTDWLGHSDVAYWRKSDPGPRLPWRVLH-EAGIGAWF--D 178
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK--RSVIRAFKTHF 247
E T R+F P +++R + YGY + RAF+ HF
Sbjct: 179 ESTRAMYQRRFCLGLPPEVEVERA-----FQRYGYKPAQNRQAFEQRTRAFQMHF 228
>gi|408785682|ref|ZP_11197424.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium lupini HPC(L)]
gi|408488401|gb|EKJ96713.1| N-acetylmuramoyl-L-alanine amidase [Rhizobium lupini HPC(L)]
Length = 259
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A ++ N + SSHY + E G++IQ+VP+ RAWHAG
Sbjct: 35 ILLHYTGMTTADGALSWLCNPESQV-SSHYFVFED-------GRIIQLVPETRRAWHAGK 86
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W D ++NS SIGI + N G G F Q+ + L +D ++ I P+
Sbjct: 87 SSWAGDEDINSRSIGIEIANQGHPG------GLPEFPMEQVEAVIELCRDCGQRWHIAPE 140
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D+AP K+DPG FPW + +G+G + P + ++ +P
Sbjct: 141 RVLAHSDVAPIRKVDPGEKFPW-DILSQHGVGHRVEPAPIRGGRFFQRGDHGQPVE---- 195
Query: 217 RGIFLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
+L YGY V IT + AF+ HF
Sbjct: 196 --ALQSMLSIYGYGVEITGNYCEKTEGAVAAFQRHF 229
>gi|330813722|ref|YP_004357961.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486817|gb|AEA81222.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 157
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 86/156 (55%), Gaps = 18/156 (11%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIV 85
+D +KY+I+HYT + ++ + S+HY+IS++ G Q+V
Sbjct: 11 FDKMQARPLKYIIIHYTGMKSQKVAIKRLQSKVAKV-STHYLISKR-------GVTYQMV 62
Query: 86 PDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGK 145
D AWHAG KW D+NLN SIGI LVN G EKF PF QI +L +L K
Sbjct: 63 RDQHVAWHAGKSKWGNDKNLNLNSIGIELVNKG--DEKF------PFL--QIKSLCMLIK 112
Query: 146 DIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ ++ KI +YVLGH+ IAPG K DPG FPW KL
Sbjct: 113 YLKNKHKIHKKYVLGHSHIAPGRKADPGIHFPWKKL 148
>gi|295688551|ref|YP_003592244.1| N-acetylmuramyl-L-alanine amidase [Caulobacter segnis ATCC 21756]
gi|295430454|gb|ADG09626.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Caulobacter segnis ATCC 21756]
Length = 242
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E ++D+R + ++LHYT + + S+HY + E G
Sbjct: 7 EAPSPNFDARKAVP-DMIVLHYTGMETGEGAIERLRDPEAKV-SAHYCVEED-------G 57
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
++ ++VP+ RAWHAG W+ +++NS SIG+ +VN G Y PF E QI +
Sbjct: 58 RIFRLVPEERRAWHAGAAFWKGVKDINSASIGVEIVNPG------HEFGYRPFPEAQIAS 111
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
+ L D+ S++ I +LGH+D+AP K+DPG LFPW +L + G G W+ P
Sbjct: 112 VINLLADVRSRWMIPDSRILGHSDVAPARKVDPGELFPWKRLA-ESGHGLWIEP 164
>gi|395494851|ref|ZP_10426430.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. PAMC 25886]
Length = 257
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 24/246 (9%)
Query: 26 YDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----K 80
++ R+G +V+ +I+HYT FA + T SSHY++++ + Y G +
Sbjct: 13 FNGRNGEAVRQVIVHYTASAFAPSLKTLTCGGV----SSHYLLADPHDPGYRAAGYQELR 68
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
V ++V + RAWHAG W NLNS SIGI +VN + + + QI L
Sbjct: 69 VFRLVDEAHRAWHAGASHWAGRDNLNSRSIGIEIVNQAR--DDAGVFTFPAYGAEQIDVL 126
Query: 141 GLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
L +DI ++ I P +LGH+DIA K DPGP PW L+ + G+GAW +++
Sbjct: 127 IDLLRDIQGRYPAIGPTDILGHSDIAYWRKSDPGPRLPWRCLF-EAGVGAWY--EDVAKM 183
Query: 200 AIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK---RSVIRAFKTHFSANQNPERI 256
A R+F + P +++R + YGY N+ + +RAF+ HF R+
Sbjct: 184 AFQRRFDISLPPEVEVERA-----FQRYGY-APAKNRLGFQQRVRAFQMHFRPCDYSGRL 237
Query: 257 YADITT 262
A
Sbjct: 238 DAQTCA 243
>gi|410664097|ref|YP_006916468.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
gi|409026454|gb|AFU98738.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Simiduia agarivorans SA1 = DSM 21679]
Length = 205
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG--KVIQIVPDNMRA 91
V++L++HYT +F + A T ++N SSHY+I E++ P KV Q+V ++ RA
Sbjct: 38 VRFLVMHYTAIDFDRSLRALTLP-SNNPVSSHYLIPERDDPSYPHDELKVFQLVDEHRRA 96
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN----YYP-FDENQIHTLGLLGKD 146
WHAG GKW +N SIGI +VN T ++P FD QI + L KD
Sbjct: 97 WHAGPGKWEDREQVNDQSIGIEIVNRAHCHPPMEQTKAGICFFPEFDREQIELVIQLSKD 156
Query: 147 IVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFP---WGKLYLDYGI 187
I+++ I P V+GH DI P K DPGP+ P W + L G+
Sbjct: 157 ILARNPDITPTRVVGHGDILPQFKNDPGPVSPGSNWPRPALAPGM 201
>gi|319782836|ref|YP_004142312.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317168724|gb|ADV12262.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 252
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A+ + A + SSHY++ E G ++Q+V ++ RAWHAG
Sbjct: 32 IVLHYTGMATGAGAEAWLCDPASEV-SSHYLVHEN-------GHIVQMVRESDRAWHAGK 83
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
W ++NS S+GI +VN G S Y F QI + L + I + I +
Sbjct: 84 SSWFGCADINSCSVGIEIVNPG------HSLGYPGFPRRQIDAVIGLCRGIAGRHSIAAE 137
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
VL H+D+APG K+DPG FPW L+ + G+G + A VR+ D
Sbjct: 138 RVLAHSDVAPGRKIDPGEKFPWRALF-EAGVG------HLVTAAPVRRGATLTTGDTGGD 190
Query: 217 RGIFLELLKAYGYNVTIT-----NKRSVIRAFKTHF 247
+L YGY V I+ +V+ AF+ HF
Sbjct: 191 IEALQSMLALYGYGVEISGVFDRQTEAVVEAFQRHF 226
>gi|114570638|ref|YP_757318.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Maricaulis maris MCS10]
gi|114341100|gb|ABI66380.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Maricaulis maris MCS10]
Length = 224
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 14/148 (9%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ ++LHYT A +R + S+HYV+ E G+++Q+V ++ RAWH
Sbjct: 20 ISLILLHYTGMESGAAAIARLCDREAQV-SAHYVVEEN-------GRILQLVGEDKRAWH 71
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG+ W+ +R++NS SIGI +VNG G F Y QI ++ L D++++ +
Sbjct: 72 AGVASWQGERDINSASIGIEIVNG---GHDFGLPAYPAV---QIESVTALVGDLMARHGV 125
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
V+GH+D+APG K DPG FPW L
Sbjct: 126 TADRVIGHSDVAPGRKQDPGEHFPWDVL 153
>gi|260432957|ref|ZP_05786928.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Silicibacter lacuscaerulensis ITI-1157]
gi|260416785|gb|EEX10044.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Silicibacter lacuscaerulensis ITI-1157]
Length = 418
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG+ ++LHYT N A + + S+HY+I
Sbjct: 200 PIWHPSPNFGPRRDGLKPSLVVLHYTAMNSARAALERLCDPESEV-SAHYLIGCD----- 253
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G + Q+V + RAWHAG+G+W+ ++NS SIGI L N G +PF + Q
Sbjct: 254 --GTLWQMVREEDRAWHAGVGEWQGQSDINSRSIGIELDNRG----------DHPFAQAQ 301
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
I L L I++++ I V+GH+D+APG K DPGP F W +L
Sbjct: 302 IRVLERLLPQIMTRWSIPAAGVIGHSDMAPGRKHDPGPRFDWLRL 346
>gi|452751991|ref|ZP_21951735.1| N-acetylmuramoyl-L-alanine amidase [alpha proteobacterium JLT2015]
gi|451960511|gb|EMD82923.1| N-acetylmuramoyl-L-alanine amidase [alpha proteobacterium JLT2015]
Length = 246
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+ V ++LHYT A + + S+HY+I E G++ ++VP+N R
Sbjct: 19 ALPVSIVVLHYTGMLSAEAARKRLCDPEAEV-SAHYLIEED-------GQIWRLVPENRR 70
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQ 150
AWHAG G WR R++NS SIGI L N G Y F E QI L L DI+ +
Sbjct: 71 AWHAGRGYWRGVRDVNSASIGIELANPG------HEHGYAAFPEAQIEALTRLLPDILER 124
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ P+ V+GH+D+AP K DPG FPW L
Sbjct: 125 HGVAPENVIGHSDLAPDRKDDPGEKFPWETL 155
>gi|319785710|ref|YP_004145185.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudoxanthomonas suwonensis 11-1]
gi|317464222|gb|ADV25954.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pseudoxanthomonas suwonensis 11-1]
Length = 248
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVY-NFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P EW + NH D + ++LH T + A + + + S+HY++
Sbjct: 27 NPLAEWSPSPNH----DARRPQVIVLHATEQRSVAQSLDTLRTRNSGGPVSAHYLVGAD- 81
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G + Q+V D RAWHAG G W LNS SIGI L N G PF
Sbjct: 82 ------GSLHQLVEDGRRAWHAGGGSWGTLAELNSASIGIELDNDGAA----------PF 125
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI L L D+ ++ I P V+ H D+AP K DPGPLFPW +L + G G W
Sbjct: 126 PPAQIDALLRLLGDLCARLGIPPHAVIAHADLAPTRKRDPGPLFPWRQLA-EAGYGLWPD 184
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQ 251
P + A F P +L ++A G+ + + + +RA++ H+ ++
Sbjct: 185 PADGEPPA---GFDP------------WLA-MQAIGW--PLGDPAAAVRAYRRHYRGDE 225
>gi|77462824|ref|YP_352328.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sphaeroides 2.4.1]
gi|77387242|gb|ABA78427.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
sphaeroides 2.4.1]
Length = 223
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R+G +++HYT A + A + S+H+++ E+ G+ +
Sbjct: 6 NCGPRREGARPDLVVIHYTAMASAEAARVRLCDPAAEV-SAHWLVPER-------GEPLA 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ +RAWHAG G W ++NS SIGI L N G PF E Q+ L L
Sbjct: 58 LVPEELRAWHAGAGSWGGVTDVNSRSIGIELANPG----------DRPFSEPQMAALERL 107
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
I+++++I P V+GH+D+AP K DPGP F W +L G+ W S
Sbjct: 108 LAGILARWRIPPARVIGHSDMAPERKCDPGPRFDWRRLARG-GLSVWPS 155
>gi|16126805|ref|NP_421369.1| N-acetylmuramoyl-L-alanine amidase [Caulobacter crescentus CB15]
gi|221235586|ref|YP_002518023.1| anhydro-N-acetylmuramyl-tripeptide amidase [Caulobacter crescentus
NA1000]
gi|13424135|gb|AAK24537.1| N-acetylmuramoyl-L-alanine amidase [Caulobacter crescentus CB15]
gi|220964759|gb|ACL96115.1| anhydro-N-acetylmuramyl-tripeptide amidase [Caulobacter crescentus
NA1000]
Length = 242
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E ++D+R + +ILHYT + + S+HY + E G
Sbjct: 7 EAPSPNFDARKAVP-DTVILHYTGMETGEAAIERLRDPEAKV-SAHYCVEED-------G 57
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+++++V + RAWHAG W+ +++NS S+GI +VN G Y PF E QI
Sbjct: 58 RIVRLVAEERRAWHAGAAFWKGVKDINSASVGIEIVNPG------HEFGYRPFPEAQIAA 111
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
+ L DI S++ I +LGH+D+AP K+DPG LFPW +L + G G W+ P
Sbjct: 112 VINLLADIRSRWMIPDSRILGHSDVAPARKIDPGELFPWKRLA-ESGHGLWIEP 164
>gi|90423688|ref|YP_532058.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris
BisB18]
gi|90105702|gb|ABD87739.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris
BisB18]
Length = 289
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 109/246 (44%), Gaps = 32/246 (13%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH + ++LHYT A + S+HYV+ E G+VIQ
Sbjct: 46 NHGERNKSRLPDMIVLHYTGMPDVEGALARLCQAGTEV-SAHYVVLED-------GRVIQ 97
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
VP++ RAWHAG+ W + ++NS SIGI +VN G Y F QI L
Sbjct: 98 CVPESRRAWHAGVASWAGEEDINSCSIGIEIVNRG------HDWGYPDFPLRQIAATIAL 151
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ I+ + ++ VL H+D+AP K DPG FPW L D +G W+ P + V + V
Sbjct: 152 CRGIIIRRGVQGHRVLAHSDVAPSRKKDPGEKFPWQSLS-DSAVGHWVPPAPI-VRSEVL 209
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERI-- 256
K L R L YGY +T V+ AF+ HF P+R+
Sbjct: 210 KLGADGDEVMALQRA-----LADYGYGLTPNGCYDPATADVVTAFQRHF----RPQRVDG 260
Query: 257 YADITT 262
AD +T
Sbjct: 261 IADAST 266
>gi|357418788|ref|YP_004931808.1| N-acetylmuramoyl-L-alanine amidase [Pseudoxanthomonas spadix
BD-a59]
gi|355336366|gb|AER57767.1| N-acetylmuramoyl-L-alanine amidase [Pseudoxanthomonas spadix
BD-a59]
Length = 263
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +WE++ N ++ +++HYT + A + + + S+HY+I
Sbjct: 36 NPLAQWERSPN----QNKRGPVLVVIHYTDQDSVAQSLKTLKTANSKGPVSAHYLIGAD- 90
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
GK Q+V D RAWHAG G W ++NS SIGI L N G PF
Sbjct: 91 ------GKRYQLVSDERRAWHAGAGYWGTIGDVNSASIGIELDNDG----------NSPF 134
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L LL D+ + I ++GH D+APG K+DPGPLFPW +L D G G W
Sbjct: 135 ARAQIDSLILLLGDLCQRHHIPRTAIIGHEDLAPGRKVDPGPLFPWKQLA-DAGFGHW 191
>gi|402819618|ref|ZP_10869186.1| hypothetical protein IMCC14465_04200 [alpha proteobacterium
IMCC14465]
gi|402511765|gb|EJW22026.1| hypothetical protein IMCC14465_04200 [alpha proteobacterium
IMCC14465]
Length = 258
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 121/257 (47%), Gaps = 39/257 (15%)
Query: 25 HYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
+Y++R D V LI+H T + A + S+HYVI E G+V +
Sbjct: 10 NYNARPDEGEVGMLIMHTTCMADTQSALDRLCDPASQV-SAHYVIDED-------GQVYR 61
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V + RAWHAG+ W + ++N +S+GI + + G + N F E Q+ L L
Sbjct: 62 LVDEEHRAWHAGVSFWGGETDVNGLSVGIEVAHPG----PDENNNEADFPEIQMQALIDL 117
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+DI+S+ I VL H+D+AP K DPG LF W +L GIG W + T + +
Sbjct: 118 SQDILSRHPIPAHRVLAHSDVAPARKTDPGSLFDWRRLAA-AGIGFW---SDCTAQDLAD 173
Query: 204 -------KFKPARPYPRK-LDRGIFLEL---LKAYGYNVTITNK-----RSVIRAFKTHF 247
P RP + +R +L LKA+GY +T ++V+RAF+ H+
Sbjct: 174 LSSPDLFHLTPLRPSDKTPKNRQAVEQLQQALKAFGYQITPDGDYGLATQTVMRAFQLHY 233
Query: 248 SANQNPERI--YADITT 262
PE I AD T
Sbjct: 234 ----RPECIDGVADATC 246
>gi|384426171|ref|YP_005635528.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
raphani 756C]
gi|341935271|gb|AEL05410.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
raphani 756C]
Length = 266
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N +D ++LH+T ++ +T + S+HY+I E
Sbjct: 33 NPLAQWVPSPN----QDARRPILIVLHFTDQHSVQQSLTTLRGRNSGGRVSAHYLIGEDG 88
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D+ RAWH G G+W ++NS SIGI L N G + F
Sbjct: 89 RRY-------QLVADSARAWHGGAGRWGTITDINSASIGIELDNDG----------HESF 131
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L +D+ ++ +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 132 APAQIDSLLVLLEDLCTRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 188
>gi|384922029|ref|ZP_10021983.1| N-acetylmuramoyl-L-alanine amidase [Citreicella sp. 357]
gi|384464111|gb|EIE48702.1| N-acetylmuramoyl-L-alanine amidase [Citreicella sp. 357]
Length = 231
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N R G ++LHYT A + N + S+HYVI
Sbjct: 15 PLWHPSDNFGPRRLGAVPDMVVLHYTAMASAEGARDWLCNPDSEV-SAHYVIDRD----- 68
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQ 136
G Q+V ++MRAWHAG G W ++NS SIGI +VN T PF + Q
Sbjct: 69 --GTCWQLVREDMRAWHAGRGTWGGVCDVNSRSIGIEMVN----------TGDEPFPDRQ 116
Query: 137 IHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEM 196
I L L I+++++I V+GH+D+A G K+DPGPLF W +L
Sbjct: 117 IDALESLLTGILARWRIPAHRVIGHSDMAIGRKIDPGPLFDWNRL--------------- 161
Query: 197 TVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
R+ P P + G F L+ +GY + ++ AF+ F
Sbjct: 162 -----ARRGLAIAPRP-DAEPGDFHADLRRFGYEFSDDQHAPLLAAFRARF 206
>gi|21233233|ref|NP_639150.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66770175|ref|YP_244937.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188993384|ref|YP_001905394.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
campestris str. B100]
gi|21115076|gb|AAM43051.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575507|gb|AAY50917.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167735144|emb|CAP53356.1| exported N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris
pv. campestris]
Length = 266
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N +D ++LH+T ++ +T + S+HY+I E
Sbjct: 33 NPLAQWVPSPN----QDARRPILIVLHFTDQHSVQQSLTTLRGRNSGGRVSAHYLIGEDG 88
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D+ RAWH G G+W ++NS SIGI L N G + F
Sbjct: 89 RRY-------QLVADSARAWHGGAGRWGTITDINSASIGIELDNDG----------HESF 131
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L +D+ ++ +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 132 APAQIDSLLVLLEDLCTRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 188
>gi|163794511|ref|ZP_02188482.1| Negative regulator of beta-lactamase expression [alpha
proteobacterium BAL199]
gi|159180235|gb|EDP64758.1| Negative regulator of beta-lactamase expression [alpha
proteobacterium BAL199]
Length = 247
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH G + L+LHYT A + A + S+HY++ E G+V +
Sbjct: 14 NHGPRPVGAPIDILLLHYTDMTRAEDALDRMCDPAAQV-SAHYLVGED-------GRVWR 65
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG+ W D ++NS SIGI + N G S Y PF + Q+ L L
Sbjct: 66 MVAEDRRAWHAGVSWWDGDSDINSRSIGIEISNPG------HSHGYRPFPDVQMSALESL 119
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ I+++ I VLGH+D++PG K+DPG LF W L GIG W
Sbjct: 120 CRGILARHPIPANRVLGHSDVSPGRKIDPGHLFDWHWLA-SRGIGLW------------- 165
Query: 204 KFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFS 248
P P P L L GY + +S + AF+ H+
Sbjct: 166 ---PTDPAPATLQPEDIAAALGTIGYRIGGAEMADPAAQSALWAFRRHWC 212
>gi|119383330|ref|YP_914386.1| N-acetylmuramoyl-L-alanine amidase [Paracoccus denitrificans
PD1222]
gi|119373097|gb|ABL68690.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Paracoccus
denitrificans PD1222]
Length = 208
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
NH D R G +++HYT A + + S+H+++ E G
Sbjct: 6 NHGDRR-GQRPSLVVIHYTGMADGPSARARLCDPEAEV-SAHWLVHED-------GLTEA 56
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP++ RAWHAG G W+ ++NS SIGI L N G PF E Q+ L L
Sbjct: 57 LVPEDRRAWHAGAGSWQGCEDVNSRSIGIELANPG----------DRPFPEPQMAALEAL 106
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
+ I++++ I P+ V+GH+D+APG K+DPGP F W +L L G+ W
Sbjct: 107 LRGIMARWPIGPEGVIGHSDMAPGRKIDPGPRFDWRRLAL-QGLAVW 152
>gi|85373066|ref|YP_457128.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter litoralis
HTCC2594]
gi|84786149|gb|ABC62331.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter litoralis
HTCC2594]
Length = 234
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 48/239 (20%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ + ++LHYT + + S+HY+ISE+ G+V ++VP++ RA
Sbjct: 19 LPISMVVLHYTEMKPVETALDRLCDPEGGV-SAHYLISEE-------GEVTRLVPEDKRA 70
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG+ WR +++NS SIGI L + G V Y F + QI L L IV
Sbjct: 71 WHAGVSYWRGHKDVNSASIGIELDHPGHV------LGYREFSDAQIDALIPLLHRIVQNH 124
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+GH+D+AP K+DPG LFPW +L ++ P
Sbjct: 125 DIPRANVVGHSDVAPARKVDPGELFPWDRLA---------------------EYNLCLPK 163
Query: 212 PRKLD-------RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
P KLD G F L+ +GY+V T+ + AF+ + PE+I +I +
Sbjct: 164 PEKLDLGNPFDNAGAFYLALERFGYDV--TDGLKAVEAFQRRW----RPEKIDGEIDGQ 216
>gi|384260807|ref|YP_005415993.1| AmpD (Negative regulator of AmpC) [Rhodospirillum photometricum DSM
122]
gi|378401907|emb|CCG07023.1| AmpD (Negative regulator of AmpC) [Rhodospirillum photometricum DSM
122]
Length = 238
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 21 KNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGK 80
++ N D +G + L+LHYT A A + A + S+H+++ E+ G+
Sbjct: 10 ESPNQDDRPEGQGIDTLVLHYTGMPTAQAALARMLDPAAQV-SAHWLVHEE-------GR 61
Query: 81 VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL 140
++ +VP+ RAWHAG WR LN+ SIGI +VN G Y PF E Q+ ++
Sbjct: 62 LVALVPEARRAWHAGRSFWRGHTALNTRSIGIEIVNPG------HEFGYRPFPEAQMRSV 115
Query: 141 GLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
L ++I+ + I P V+ H DIAP K DPG LF W +L G+G W DE
Sbjct: 116 VALCREILRRHPAIVPVNVVAHADIAPTRKEDPGELFDWPRLAA-AGVGLWPGGDE 170
>gi|71082743|ref|YP_265462.1| N-acetylmuramoyl-L-alanine amidase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71061856|gb|AAZ20859.1| probable N-acetylmuramoyl-L-alanine amidase [Candidatus
Pelagibacter ubique HTCC1062]
Length = 247
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 34/256 (13%)
Query: 29 RDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
R +K++I HYT + + + + T ++ S HY+I G++++IVPD
Sbjct: 18 RTSKQIKFIIFHYTGMKSESDALKRLTEIQSE--VSCHYLIKN-------NGEIVKIVPD 68
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AWHAG W+ ++LN SIGI + N G Y F + QI TL L K +
Sbjct: 69 LYIAWHAGKSSWKNYKSLNQNSIGIEITNPG------HEYGYKNFTQKQITTLVKLSKFL 122
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+ ++KI P+ +LGH+DIA K DPG FPW L + IG W + ++ + K
Sbjct: 123 IKKYKINPKNILGHSDIAVLRKKDPGEKFPWEYLAKN-KIGIWHTLNKQDL------LKN 175
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTI-----TNKR--SVIRAFKTHFSANQNPERIYADI 260
+ K++ IF L GY+ T NK +I++F+ F E + I
Sbjct: 176 RKLKISKVEENIFFRNLFKIGYSKTFPKNIGRNKYLIELIKSFQRRFRQ----ELVDGKI 231
Query: 261 TTEDMFWAWALVAKYG 276
E + +L+ Y
Sbjct: 232 DQESLLINKSLIKAYN 247
>gi|262276870|ref|ZP_06054663.1| N-acetylmuramoyl-L-alanine amidase AmiD [alpha proteobacterium
HIMB114]
gi|262223973|gb|EEY74432.1| N-acetylmuramoyl-L-alanine amidase AmiD [alpha proteobacterium
HIMB114]
Length = 159
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 88/164 (53%), Gaps = 20/164 (12%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
+K ++D +KY+I+HYT + + I S A S HY+IS G
Sbjct: 7 QKPSENFDKLKDRRIKYVIIHYTGMRDQKSAIKRLQSKVAKV--SCHYLISR-------G 57
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
GKV Q+V D AWHAG KW +D NLNS SIGI LVN G + F QI
Sbjct: 58 GKVYQMVQDLDVAWHAGKSKWGKDINLNSKSIGIELVNKG----------FESFPNKQIL 107
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
L + K + ++KIKP YVLGH DI+PG K DPGP FPW LY
Sbjct: 108 ALIKILKILKKKYKIKPSYVLGHEDISPGRKTDPGPKFPWKILY 151
>gi|149201749|ref|ZP_01878723.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseovarius sp.
TM1035]
gi|149144797|gb|EDM32826.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseovarius sp.
TM1035]
Length = 250
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
W + N R G+ ++LHYT A + + + + S+HY+I E+
Sbjct: 26 WHPSPNIGLRRGGVCPDMIVLHYTAMVTAEVALERLCDPSAEV-SAHYLICER------- 77
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G++ +V + RAWHAG G+W ++NS SIGI L N T +PF E Q+
Sbjct: 78 GRLWHLVAEGARAWHAGAGQWGDVTDVNSRSIGIELAN----------TGLHPFPEPQMR 127
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
L L I++++ I P V+ H+D+AP K DPGP F W +L G+ W
Sbjct: 128 ALEGLMVGIMARWSIPPARVIAHSDMAPARKCDPGPRFDWRRLARQ-GLSIW 178
>gi|103487220|ref|YP_616781.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sphingopyxis alaskensis RB2256]
gi|98977297|gb|ABF53448.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Sphingopyxis alaskensis RB2256]
Length = 229
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
E+ ++D R + V ++LHYT + A I A S+HYV+SE
Sbjct: 6 ERWSPNFDER-ALPVSMIVLHYTGMKTGAEAIDRLADPDARV--SAHYVVSED------- 55
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G++ +VP++ RAWHAG WR ++NS SIGI +VN G Y PF E Q+
Sbjct: 56 GQITHMVPEDKRAWHAGKSHWRGISDINSASIGIEIVNPG------HEYGYVPFPEPQVA 109
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTV 198
++ L I ++ I V+GH+DIAP K DPG LFPW +L
Sbjct: 110 SVVRLVHLIKDRYAITRGNVVGHSDIAPTRKQDPGELFPWEELAR--------------- 154
Query: 199 EAIVRKFKPARPYPRKLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPE 254
R+ RP + D FL L+ +GY+VT +V AF+ F PE
Sbjct: 155 ----RRLALPRPTKKLTDPLWTDAGFLLALERFGYDVTDGFAATV--AFQRRF----RPE 204
Query: 255 RIYADITTE 263
I I E
Sbjct: 205 LIDGTIDGE 213
>gi|209884372|ref|YP_002288229.1| amidase [Oligotropha carboxidovorans OM5]
gi|337741943|ref|YP_004633671.1| amidase [Oligotropha carboxidovorans OM5]
gi|386030959|ref|YP_005951734.1| amidase [Oligotropha carboxidovorans OM4]
gi|209872568|gb|ACI92364.1| amidase [Oligotropha carboxidovorans OM5]
gi|336096027|gb|AEI03853.1| amidase [Oligotropha carboxidovorans OM4]
gi|336099607|gb|AEI07430.1| amidase [Oligotropha carboxidovorans OM5]
Length = 291
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 109/238 (45%), Gaps = 42/238 (17%)
Query: 37 LILHYTVYNFA-----HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
++LHYT + A + TA T S+HYV+ E G +IQ V +N RA
Sbjct: 59 IVLHYTGMSSAAGALKKLCTAGTET------SAHYVVMED-------GNIIQCVRENDRA 105
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG W D ++NS SIGI +VN G Y F Q+ + L K I+ +
Sbjct: 106 WHAGSASWNGDNDINSASIGIQIVNPG------HDLGYPDFPLRQVAAVIALCKGIMLRR 159
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
K+ VLGH D+AP + DPG FPW +L D G+G ++ P + + + A
Sbjct: 160 KVPKHRVLGHADVAPARRKDPGEKFPW-RLLADSGVGHFVEPAPI-MNGDRKLLGTASEE 217
Query: 212 PRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSANQNPERI--YADITT 262
L R + YGY V T + + AF+ HF PER+ AD +T
Sbjct: 218 IMSLQRALI-----RYGYPVLPTGQYDGVTMDGVAAFQRHF----RPERVDGIADQST 266
>gi|302383894|ref|YP_003819717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Brevundimonas subvibrioides ATCC 15264]
gi|302194522|gb|ADL02094.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Brevundimonas subvibrioides ATCC 15264]
Length = 253
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 16/182 (8%)
Query: 20 EKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
E ++D R G ++LHYT A + A + + S+HYV+ E G
Sbjct: 6 EAPSPNFDPRRGPP-DMVLLHYTGMQTAEVAVAHLRDPEAKV-SAHYVVDED-------G 56
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
++++V + RAWHAG WR + ++N++SIGI +VN G Y F + QI
Sbjct: 57 SILRLVDEERRAWHAGRSWWRGETDINAVSIGIEIVNPG------HEFGYRLFPDPQIDA 110
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+ L +DI +++ I+ +LGH+D+AP K DPG LFPW +L + G W P +
Sbjct: 111 VIALIEDIRTRWTIEDARILGHSDVAPTRKQDPGELFPWKRLAA-HRQGLWFEPAAERIA 169
Query: 200 AI 201
A+
Sbjct: 170 AL 171
>gi|373954284|ref|ZP_09614244.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Mucilaginibacter paludis DSM 18603]
gi|373890884|gb|EHQ26781.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Mucilaginibacter paludis DSM 18603]
Length = 275
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 36 YLILHYTVY-NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+I+HYT + I FT R S+HYV+++ G+V+ +V D +RA HA
Sbjct: 77 YVIIHYTAEGSIGQTIHTFTVKRTQV--SAHYVVAKD-------GQVVHMVNDYLRAQHA 127
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+GKW ++NS+SIGI + N G P+ + QI +L L + + I
Sbjct: 128 GLGKWGSVIDMNSISIGIEIDNNG----------NEPYTDAQIKSLLALLDRLKKAYAIP 177
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH D AP K DPGP FPW KL + G G W S D + + P
Sbjct: 178 AANFIGHQDFAPKRKPDPGPFFPWKKL-AEKGFGYW-SDDVLELS------------PEN 223
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
D I L L+ GY+ + N + + AFK HF
Sbjct: 224 FDYAIALRLI---GYDTSDLN--AAVVAFKRHF 251
>gi|325105691|ref|YP_004275345.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pedobacter saltans DSM 12145]
gi|324974539|gb|ADY53523.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Pedobacter saltans DSM 12145]
Length = 287
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 102/219 (46%), Gaps = 51/219 (23%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + I FT R S+HYVI G ++Q++ D +RAWHA
Sbjct: 89 FVIIHHTAQDSIQQTIKTFTLERTQ--VSAHYVIGRD-------GFLVQMLSDELRAWHA 139
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G GKW ++NS SIGI L N G + PF + QI+TL LL + + + I
Sbjct: 140 GAGKWGNMTDMNSCSIGIELDNNG----------FEPFSDAQINTLLLLLEKLKRDYNIP 189
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW------LSPDEMTVEAIVRKFKPA 208
+GH+DIAP K DP LFPW KL G G W L P VEA +R+
Sbjct: 190 AANFIGHSDIAPRRKSDPSILFPWEKL-ARAGFGLWYDLPDQLPPSNFDVEAALRRI--- 245
Query: 209 RPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
GY+V ++ + I AFK HF
Sbjct: 246 -------------------GYDV--SDLPAAIIAFKRHF 263
>gi|149278250|ref|ZP_01884388.1| N-acetylmuramoyl-L-alanine amidase [Pedobacter sp. BAL39]
gi|149231016|gb|EDM36397.1| N-acetylmuramoyl-L-alanine amidase [Pedobacter sp. BAL39]
Length = 278
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 111/241 (46%), Gaps = 43/241 (17%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++I+H+T + + F + +A S+HYVI GKV+Q+V D +RA HA
Sbjct: 79 FVIIHHTAQDSLTQTVNTFLNAKAE--VSAHYVIGRD-------GKVVQMVNDYLRANHA 129
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G KW D +LNS SIGI L N G PF + Q+ +L + + + ++ I
Sbjct: 130 GAAKWGNDSDLNSSSIGIELDNNGKTD---------PFTDAQLRSLVGVLEVLKKKYNIP 180
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH DIAPG K+DP FPW K+ G G W D + + P
Sbjct: 181 TANFIGHADIAPGRKVDPMN-FPW-KVLAKKGFGFWYD-DVLQLP------------PEN 225
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAK 274
D + L ++ GYN N +S I AFK HF N N A +T D + L K
Sbjct: 226 FDTTLALRII---GYNT--ANLKSAISAFKLHFVQNDNT----AVLTATDKLILFNLYKK 276
Query: 275 Y 275
Y
Sbjct: 277 Y 277
>gi|114327104|ref|YP_744261.1| anhydro-N-acetylmuramyl-tripeptide amidase [Granulibacter
bethesdensis CGDNIH1]
gi|114315278|gb|ABI61338.1| anhydro-N-acetylmuramyl-tripeptide amidase [Granulibacter
bethesdensis CGDNIH1]
Length = 250
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 112/245 (45%), Gaps = 41/245 (16%)
Query: 13 IDPFPE---WEKNRNHYDSRDGMS------VKYLILHYT-VYNFAHIITAFTSNRAHNLH 62
++PFP E+ +YD+R + V L+LHYT + + A I A
Sbjct: 3 VEPFPMPPIRERPSPNYDARPSATAGTPGAVDMLVLHYTGMTSAAAAIDRLCDPEARV-- 60
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHYV+ E G V ++V + RAWHAGI WR LN S+GI +VN G
Sbjct: 61 SSHYVVEED-------GTVWRLVWEQYRAWHAGISHWRGRSWLNDFSVGIEIVNPG---- 109
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
Y F E Q+ ++ L IV Q I +++ H+DIAP K DPG LF W +
Sbjct: 110 --HEWGYRAFPEAQMRSVLALAHAIVRQHSIPAAHIVAHSDIAPDRKQDPGELFDW-RWL 166
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRA 242
+GIG W PD V+ R + P+ + L+ GY + V+RA
Sbjct: 167 AQHGIGVW--PDATPVKD--RPKQENDPW----------DFLRRIGYRTDLPLD-MVLRA 211
Query: 243 FKTHF 247
F+ F
Sbjct: 212 FQRRF 216
>gi|332557712|ref|ZP_08412034.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sphaeroides WS8N]
gi|332275424|gb|EGJ20739.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sphaeroides WS8N]
Length = 205
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
+++HYT A + A + S+H+++ E+ G+ + +VP+ +RAWHAG
Sbjct: 1 MVIHYTAMASAEAARVRLCDPAAEV-SAHWLVPER-------GEPLALVPEELRAWHAGA 52
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G W ++NS SIGI L N G PF E Q+ L L I+++++I P
Sbjct: 53 GAWGGVTDVNSRSIGIELANPG----------DRPFSEPQMAALERLLAGILARWRIPPA 102
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
V+GH+D+AP K DPGP F W +L G+ W S EA
Sbjct: 103 RVIGHSDMAPERKCDPGPRFDWRRLARG-GLSVWPSDGSPPAEA 145
>gi|359397984|ref|ZP_09191008.1| negative regulator of AmpC, AmpD [Novosphingobium pentaromativorans
US6-1]
gi|357600402|gb|EHJ62097.1| negative regulator of AmpC, AmpD [Novosphingobium pentaromativorans
US6-1]
Length = 234
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ ++LHYT A + + S+HY+I E G V +VP+ RAWH
Sbjct: 22 ISMVVLHYTGMKSAQEALERMCDPQAEV-SAHYMIDED-------GIVTNLVPEEKRAWH 73
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR + ++NS SIGI LVN G Y PF E Q+ L L DI+ + I
Sbjct: 74 AGRSYWRGEVDVNSASIGIELVNPG------HEFGYRPFPEPQMDALLPLLADIMDRHDI 127
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
V+GH+DIAP K DPG F W +L E+ + + + K Y
Sbjct: 128 PRANVVGHSDIAPARKQDPGEYFDWARL------------GELGLALDIPRAKMNLFYDN 175
Query: 214 KLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
G F L+ +GY+ IT+ R+ +RAF+ + PE I +I E
Sbjct: 176 P---GAFYLALERFGYD--ITDGRAAVRAFQRRW----RPEIIDGEIDGE 216
>gi|91762835|ref|ZP_01264800.1| probable N-acetylmuramoyl-L-alanine amidase [Candidatus
Pelagibacter ubique HTCC1002]
gi|91718637|gb|EAS85287.1| probable N-acetylmuramoyl-L-alanine amidase [Candidatus
Pelagibacter ubique HTCC1002]
Length = 247
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 118/256 (46%), Gaps = 34/256 (13%)
Query: 29 RDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
R +K++I HYT + + + + T ++ S HY+I G++++IVPD
Sbjct: 18 RTSKQIKFIIFHYTGMKSESDALKRLTEIQSE--VSCHYLIKN-------NGEIVKIVPD 68
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
AWHAG W+ ++LN SIGI + N G Y F + QI TL K +
Sbjct: 69 LYIAWHAGKSSWKNYKSLNQNSIGIEITNPG------HEYGYKNFTQKQITTLVKFSKFL 122
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
+ ++KI P+ +LGH+DIA K DPG FPW L + IG W + ++ + K
Sbjct: 123 IKKYKINPKNILGHSDIAVLRKKDPGEKFPWEYLAKN-KIGIWHTLNKQDL------LKN 175
Query: 208 ARPYPRKLDRGIFLELLKAYGYNVTI-----TNKR--SVIRAFKTHFSANQNPERIYADI 260
+ K++ IF L GY+ T NK +I++F+ F E + I
Sbjct: 176 RKLKISKVEENIFFRNLFKIGYSKTFPKNIGRNKYLIELIKSFQRRFRQ----ELVDGKI 231
Query: 261 TTEDMFWAWALVAKYG 276
E + +L+ Y
Sbjct: 232 DQESLLINKSLIKAYN 247
>gi|433679615|ref|ZP_20511327.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815270|emb|CCP41924.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 268
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 41/238 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKE 72
+P EW + N +D +++HYT + H + S+ + S+HY+I
Sbjct: 35 NPLAEWVPSPN----QDLRRPLLIVIHYTDQDSVQHSLDTLRSHNSKGKVSAHYLIGRD- 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
GK Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 ------GKRYQLVSDERRAWHGGAGRWGTITDINSASIGIELDNDGKT----------PF 133
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI +L LL +D+ ++ +I V+GH D AP K+DPGPLFPW +L G G W +
Sbjct: 134 APAQIDSLLLLLEDLCARLRIPRTQVVGHEDFAPTRKVDPGPLFPWKRL-AGAGFGRWPA 192
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
F P + L GY I ++ + +RAF H+ N
Sbjct: 193 ---ADTPPAPPGFDP-------------WQALALIGY--PIDDRAATLRAFHHHYRGN 232
>gi|190572233|ref|YP_001970078.1| N-acetylmuramoyl-L-alanine amidase [Stenotrophomonas maltophilia
K279a]
gi|190010155|emb|CAQ43763.1| putative N-acetylmuramoyl-L-alanine amidase [Stenotrophomonas
maltophilia K279a]
Length = 248
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 49/240 (20%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHN 60
++ P +P W + N ++ + +++H+T + T T+N
Sbjct: 17 AACASAPQETRNPLATWVPSPN----QNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGP 72
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+ S+HY++ +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 73 V-SAHYLVGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG-- 122
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
RS PF QI +L +L +D+ S+ I P+ V+GH D+AP K DP FPW +
Sbjct: 123 ----RS----PFSAAQIESLIVLLRDLTSRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQ 174
Query: 181 LYLDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
L + G G W L E TV A R+F+ P+ LD
Sbjct: 175 LA-EVGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLD 233
>gi|334141365|ref|YP_004534571.1| negative regulator of AmpC, AmpD [Novosphingobium sp. PP1Y]
gi|333939395|emb|CCA92753.1| negative regulator of AmpC, AmpD [Novosphingobium sp. PP1Y]
Length = 234
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ ++LHYT A + + S+HY+I E G V +VP+ RAWH
Sbjct: 22 ISMVVLHYTGMKSAQEALERMCDPQAEV-SAHYMIDED-------GVVTNLVPEEKRAWH 73
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR + ++NS SIGI LVN G Y PF E Q+ L L DI+ + I
Sbjct: 74 AGRSYWRGEVDVNSASIGIELVNPG------HEFGYRPFPEPQMDALLPLLADIMDRHDI 127
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
V+GH+D+AP K DPG F W +L E+ + + K K Y
Sbjct: 128 PRANVVGHSDVAPARKQDPGEYFDWVRL------------GELGLALDIPKAKMNLFYDN 175
Query: 214 KLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTE 263
G F L+ +GY+ IT+ R+ +RAF+ + PE I +I E
Sbjct: 176 P---GAFYLALERFGYD--ITDGRAAVRAFQRRW----RPEIIDGEIDGE 216
>gi|239635075|gb|ACR84721.1| N-acetyl-anhydromuramyl-L-alanine amidase [Stenotrophomonas
maltophilia]
Length = 248
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 49/240 (20%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHN 60
++ P +P W + N ++ + +++H+T + T T+N
Sbjct: 17 AACASAPQETRNPLATWVPSPN----QNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGP 72
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+ S+HY++ +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 73 V-SAHYLVGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG-- 122
Query: 121 GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
RS PF QI +L +L +D+ S+ I P+ V+GH D+AP K DP FPW +
Sbjct: 123 ----RS----PFSAAQIESLIVLLRDLTSRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQ 174
Query: 181 LYLDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
L + G G W L E TV A R+F+ P+ LD
Sbjct: 175 LA-EAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLD 233
>gi|429210018|ref|ZP_19201220.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sp. AKP1]
gi|428187013|gb|EKX55623.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sp. AKP1]
Length = 223
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R+G +++HYT A A + A + S+H+++ E+ G +
Sbjct: 6 NCGPRREGARPDLVVIHYTAMASAEAARARLCDPAAEV-SAHWLVPER-------GDPLA 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ +RAWHAG G W ++NS SIGI L N G PF E Q+ L L
Sbjct: 58 LVPEELRAWHAGAGSWGGVTDVNSRSIGIELANPG----------DRPFPEPQMAALERL 107
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
I+++++I P V+GH+D+AP K DPGP F W +L G+ W S
Sbjct: 108 LAGILARWRIPPARVIGHSDMAPERKCDPGPRFDWRRLARG-GLSVWPS 155
>gi|300770668|ref|ZP_07080547.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300763144|gb|EFK59961.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 276
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 115/241 (47%), Gaps = 42/241 (17%)
Query: 36 YLILHYTVYNFA-HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+++H+T N I F S +A SSHYV+ GKV+Q+V D RA HA
Sbjct: 76 YVVIHHTAQNSTDQTIKTFHSAKAGV--SSHYVVGR-------DGKVVQMVNDYYRAHHA 126
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
GIGKW D +LNS SIGI L N G P+ E+QI++L L + +++ I
Sbjct: 127 GIGKWGNDTDLNSSSIGIELDNNGTTD---------PWTESQINSLIELLTYLKTKYGIP 177
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH D+AP K DP FPW L D G G W D+ +E F P
Sbjct: 178 QANFIGHMDLAPTRKNDP-TRFPWKAL-ADKGFGYWY--DDF-LETPPVDFNP------- 225
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAK 274
+ L+ GY+ I N + I+AFKTH+ + A +T ED +A+ K
Sbjct: 226 ------VMALRIIGYD--IKNPDAAIKAFKTHYIQR---DITTATLTDEDRKIMYAIYKK 274
Query: 275 Y 275
+
Sbjct: 275 F 275
>gi|126461716|ref|YP_001042830.1| N-acetylmuramoyl-L-alanine amidase [Rhodobacter sphaeroides ATCC
17029]
gi|126103380|gb|ABN76058.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
sphaeroides ATCC 17029]
Length = 223
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R+G +++HYT A + A + S+H+++ E+ G+ +
Sbjct: 6 NCGPRREGARPDLVVIHYTAMASAEAARVRLCDPAAEV-SAHWLVPER-------GEPLA 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ +RAWHAG G W ++NS SIGI L N G PF E Q+ L L
Sbjct: 58 LVPEELRAWHAGAGSWGGVTDVNSRSIGIELANPG----------DRPFPEPQMAALERL 107
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
I+++++I P V+GH+D+AP K DPG F W +L G+ W S
Sbjct: 108 LAGILARWRIPPARVIGHSDMAPERKCDPGLRFDWRRLARG-GLSVWPS 155
>gi|149914085|ref|ZP_01902617.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseobacter sp.
AzwK-3b]
gi|149812369|gb|EDM72200.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseobacter sp.
AzwK-3b]
Length = 206
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 19/157 (12%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
++LHYT A + + S+HY+I E+ G+V ++V + RAWHAG
Sbjct: 2 IVLHYTAMQTAEAALERLCDALAEV-SAHYLICER-------GRVWRLVDEAARAWHAGA 53
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G+W ++NS SIGI L N G +PF ++Q+ L L + I+ ++ I P+
Sbjct: 54 GQWGDVTDVNSRSIGIELANPGT----------HPFPDSQMRALEGLMQGIMQRWSIAPE 103
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
V+ H+D+AP K DPGP F W +L G+ W P
Sbjct: 104 RVIAHSDMAPTRKSDPGPRFDWRRLAR-QGLSVWPQP 139
>gi|339502689|ref|YP_004690109.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseobacter litoralis Och
149]
gi|338756682|gb|AEI93146.1| putative N-acetylmuramoyl-L-alanine amidase AmiD [Roseobacter
litoralis Och 149]
Length = 210
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R+G++ +++HYT A A + + S+HY+I G V Q
Sbjct: 8 NFSPRRNGLTPTLIVIHYTAMASADAAIARLCDPQAEV-SAHYLIDRS-------GPVTQ 59
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+V ++ RAWHAG+G+WR ++NS SIGI L N G PF E Q+ L L
Sbjct: 60 MVKEDQRAWHAGVGEWRGLTDINSRSIGIELDNDGT----------QPFPEPQMAALEDL 109
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMT 197
+ I +++ + ++GH+D+APG K DPGP F W +L G+ A ++P+
Sbjct: 110 LQGIRNRWPVAASDIIGHSDMAPGRKSDPGPRFDWARLAR-QGLAAPVAPETQC 162
>gi|227539195|ref|ZP_03969244.1| N-acetylmuramoyl-L-alanine amidase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227240877|gb|EEI90892.1| N-acetylmuramoyl-L-alanine amidase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 276
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 115/241 (47%), Gaps = 42/241 (17%)
Query: 36 YLILHYTVYNFA-HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+++H+T N I F S +A SSHYV+ GKV+Q+V D RA HA
Sbjct: 76 YVVIHHTAQNSTDQTIKTFHSAKAGV--SSHYVVGR-------DGKVVQMVNDYYRAHHA 126
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
GIGKW D +LNS SIGI L N G P+ E+QI++L L + +++ I
Sbjct: 127 GIGKWGNDTDLNSSSIGIELDNNGTTD---------PWTESQINSLIELLTYLKTKYGIP 177
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH D+AP K DP FPW L D G G W D+ +E F P
Sbjct: 178 QANFIGHMDLAPTRKNDP-TRFPWKAL-ADKGFGYWY--DDF-LETPPVDFNP------- 225
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAK 274
+ L+ GY+ I N + I+AFKTH+ + A +T ED +A+ K
Sbjct: 226 ------VMALRIIGYD--IKNPDAAIKAFKTHYIQR---DITTATLTDEDRKIMYAIYKK 274
Query: 275 Y 275
+
Sbjct: 275 F 275
>gi|365858493|ref|ZP_09398422.1| N-acetylmuramoyl-L-alanine amidase [Acetobacteraceae bacterium
AT-5844]
gi|363714095|gb|EHL97643.1| N-acetylmuramoyl-L-alanine amidase [Acetobacteraceae bacterium
AT-5844]
Length = 246
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHI----ITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
NH DG + L+LHYT A + S HY++ E G
Sbjct: 9 NHDARPDGTPIDTLVLHYTGMQTAKAALDRLCDIDPPAPLPRVSCHYLVEED-------G 61
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+ ++VP+ RAWHAG WR LN SIGI +VN G Y PF Q+
Sbjct: 62 LIWKLVPEERRAWHAGASFWRGHETLNGRSIGIEIVNPG------HEWGYRPFPALQMAA 115
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVE 199
+ L +I+ + I + V+GH+DIAP K DPG LF W L + GIG W P E+
Sbjct: 116 VADLCLEILGRHPIPARNVVGHSDIAPDRKQDPGELFDWEGLAAN-GIGLW--PAEVDGS 172
Query: 200 AIVRKFKPARPYPRKLDRGIF--LELLKAYGYNVTITNKRSVIRAFKTHF 247
R + G+ LLK GY V N R + AF+ +
Sbjct: 173 GAERP-----------EGGMVRAAALLKRIGYPVDPANPRIALVAFQRRW 211
>gi|431797387|ref|YP_007224291.1| negative regulator of beta-lactamase expression [Echinicola
vietnamensis DSM 17526]
gi|430788152|gb|AGA78281.1| negative regulator of beta-lactamase expression [Echinicola
vietnamensis DSM 17526]
Length = 298
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 109/225 (48%), Gaps = 43/225 (19%)
Query: 36 YLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++++H+T + I FT R SSHYVIS G ++Q++ D +R+WHA
Sbjct: 79 FVVIHHTAQDSLEQTIHTFTIPRTQV--SSHYVISRD-------GTIVQMLNDYLRSWHA 129
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G GKW D +LNS S+GI L N G PF E QI++L L K + + I
Sbjct: 130 GRGKWGHDTDLNSASLGIELDNNG----------KEPFTEEQINSLLKLLKRLKEDYNIP 179
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW----------LSPDEM--TVEAIV 202
+GH D+AP K+DP FPW +L + G G W L +M E ++
Sbjct: 180 TANFIGHADLAPRRKVDPSIHFPWKRL-AEEGFGLWYDDFLLMDIDLPTGDMGYKTETVM 238
Query: 203 RKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ P +P LE L+ GY+ I++ + I++FK HF
Sbjct: 239 LEAVPDSFHP--------LEALRIIGYD--ISDPGAAIQSFKLHF 273
>gi|389797308|ref|ZP_10200351.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter sp. 116-2]
gi|388447682|gb|EIM03682.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter sp. 116-2]
Length = 263
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 43/240 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHNLHSSHYVISEK 71
+P W + NH D ++LHYT + T T+N + S+HY+I
Sbjct: 33 NPLATWVPSPNH----DIRRPVLIVLHYTQQQSVQQSLDTLRTANSGGPV-SAHYLIGAD 87
Query: 72 EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
G + Q+V D +RAWH G G W ++NS SIGI L N G P
Sbjct: 88 -------GHIYQLVSDQLRAWHGGPGHWGTITDINSASIGIELDNDGAA----------P 130
Query: 132 FDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWL 191
F + QI +L L D+ ++ I ++GH D+APG K DPGP FPW +L D G G W
Sbjct: 131 FAQPQIDSLLRLLTDLSTRLHIPRTQIIGHEDLAPGRKDDPGPRFPWRQLA-DAGYGRW- 188
Query: 192 SPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQ 251
P ++ P D + L A GY + ++ + +RAF HF Q
Sbjct: 189 -PRGALIDP-----------PSGFDPWL---ALAAIGY--PLDDRAAAVRAFHHHFRGMQ 231
>gi|440729721|ref|ZP_20909839.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas translucens
DAR61454]
gi|440380697|gb|ELQ17255.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas translucens
DAR61454]
Length = 260
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 109/240 (45%), Gaps = 45/240 (18%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH---SSHYVISE 70
+P EW + N +D +++HYT + + + + R+HN + S+HY+I
Sbjct: 23 NPLAEWVPSPN----QDLRRPILIVIHYTEQD--SVQRSLDTLRSHNSNGKVSAHYLIGR 76
Query: 71 KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY 130
GK Q+V D RAWH G G+W ++NS SIGI L N G
Sbjct: 77 D-------GKRYQLVSDERRAWHGGAGRWGTITDINSASIGIELDNDGKTA--------- 120
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F QI +L LL +D+ ++ +I V+GH D AP K+DPGPLFPW +L D G G W
Sbjct: 121 -FAPAQIDSLLLLLEDLCTRLRIPRTQVVGHEDFAPTRKVDPGPLFPWKRLAED-GFGRW 178
Query: 191 LSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
+ F P + L GY I ++ + +RAF H+ N
Sbjct: 179 PA---ADTPPAPPGFGP-------------WQALALIGY--PIDDRAATLRAFHHHYRGN 220
>gi|149187047|ref|ZP_01865354.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter sp. SD-21]
gi|148829336|gb|EDL47780.1| N-acetylmuramoyl-L-alanine amidase [Erythrobacter sp. SD-21]
Length = 249
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 52/241 (21%)
Query: 24 NHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
NH + + + + +++HYT + + I A S++Y+I + GG+V+
Sbjct: 28 NHDERK--LPITMVVIHYTEMEDKGFAIERLCDPEAKV--SANYLIGK-------GGEVV 76
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
++VP+ RAWHAG+ WR +++NS SIGI L + G Y F + Q L
Sbjct: 77 RLVPEEKRAWHAGVSYWRGIKDVNSASIGIELDHPG------HKYGYCEFPDAQFEALVP 130
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIV 202
L +V Q+ I V+GH+D+AP K+DPG LFPW +L +YG+
Sbjct: 131 LVARMVKQYDIPRANVVGHSDVAPARKIDPGELFPWDRL-AEYGL--------------- 174
Query: 203 RKFKPARPYPRKLDRG-------IFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPER 255
P P KL+RG F L+ +GY+++ +K + AF+ + PE+
Sbjct: 175 -----CLPRPTKLERGDPFDNDASFYLALERFGYDISDGHK--AVEAFQRRW----RPEK 223
Query: 256 I 256
I
Sbjct: 224 I 224
>gi|254525017|ref|ZP_05137072.1| N-acetylmuramoyl-L-alanine amidase AmiD [Stenotrophomonas sp.
SKA14]
gi|219722608|gb|EED41133.1| N-acetylmuramoyl-L-alanine amidase AmiD [Stenotrophomonas sp.
SKA14]
Length = 238
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 64 SAHYLIGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG---- 112
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
RS PF QI +L +L +D+ ++ I P+ V+GH D+AP K DP FPW +L
Sbjct: 113 --RS----PFSAAQIESLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLA 166
Query: 183 LDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
+ G G W L E TV A R+F+ P+ LD
Sbjct: 167 -EAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKMLD 223
>gi|389807039|ref|ZP_10203924.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter thiooxydans LCS2]
gi|388444829|gb|EIM00924.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter thiooxydans LCS2]
Length = 259
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 111/240 (46%), Gaps = 41/240 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVY-NFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P W + N YD R + ++LHYT + + S+ + S+HY++
Sbjct: 38 NPLATWVPSPN-YDIRRPV---LIVLHYTQQQSVQQSLDTLRSSNSMGPVSAHYLVGAD- 92
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G + Q+VPD RAW AG G+W +LNS SIGI L N G PF
Sbjct: 93 ------GHIYQLVPDQWRAWQAGPGRWGTVTDLNSASIGIELDNDGAT----------PF 136
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
+ QI +L L D+ ++ I P ++GH D+APG K DPGPLFPW +L G G W
Sbjct: 137 AQPQIDSLLRLLSDLTTRLHIPPTQIIGHEDLAPGRKDDPGPLFPWQQLAA-AGYGRW-- 193
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQN 252
P V+ P D + L L+ GY + ++ + +RAF HF Q
Sbjct: 194 PQGELVDP-----------PAGFDPWMALGLV---GY--PLDDRTAAVRAFHHHFRGMQG 237
>gi|84515293|ref|ZP_01002655.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Loktanella
vestfoldensis SKA53]
gi|84510576|gb|EAQ07031.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Loktanella
vestfoldensis SKA53]
Length = 205
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 39/211 (18%)
Query: 37 LILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGI 96
+++HYT A N A + S+HY+I + G ++ +VP+++RAWHAG
Sbjct: 2 VVIHYTAMASAAAACDTLCNPATQV-SAHYLIVQD-------GTLLSLVPEDLRAWHAGA 53
Query: 97 GKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQ 156
G+W ++NS SIGI L N G PF + L L + I+ ++ I P
Sbjct: 54 GRWGAVSDVNSHSIGIELANDGA----------SPFAAPLMDALEDLLRAIMPRWDIPPA 103
Query: 157 YVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLD 216
V+GH+D+AP K+DPGP F W +L L G+ W P + D
Sbjct: 104 RVIGHSDMAPQRKIDPGPRFDWRRLAL-QGLSVW-------------------PEAGQAD 143
Query: 217 RGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
F ++A+GY T + +++ F+ F
Sbjct: 144 PAGFAAGMRAFGYTAT-DDPDLLLQCFRLRF 173
>gi|386716570|ref|YP_006182896.1| N-acetyl-anhydromuramyl-L-alanine amidase [Stenotrophomonas
maltophilia D457]
gi|384076132|emb|CCH10709.1| N-acetyl-anhydromuramyl-L-alanine amidase [Stenotrophomonas
maltophilia D457]
Length = 273
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 99 SAHYLIGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG---- 147
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
RS PF QI +L +L +D+ ++ I P+ V+GH D+AP K DP FPW +L
Sbjct: 148 --RS----PFSAAQIESLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLA 201
Query: 183 LDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
+ G G W L E TV A R+F+ P+ LD
Sbjct: 202 -EAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLD 258
>gi|456737433|gb|EMF62128.1| N-acetylmuramoyl-L-alanine amidase [Stenotrophomonas maltophilia
EPM1]
Length = 248
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY++ +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 74 SAHYLVGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG---- 122
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
RS PF QI +L +L +D+ ++ I P+ V+GH D+AP K DP FPW +L
Sbjct: 123 --RS----PFSAAQIDSLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLA 176
Query: 183 LDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
+ G G W L E TV A R+F+ P+ LD
Sbjct: 177 -EAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLD 233
>gi|114773345|ref|ZP_01450549.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacterales
bacterium HTCC2255]
gi|114546279|gb|EAU49190.1| N-acetylmuramoyl-L-alanine amidase, family 2 [alpha proteobacterium
HTCC2255]
Length = 238
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
R G+ ++LHYT + S+ + S+HY+I E GKV Q+V +
Sbjct: 19 RGGVIPSMIVLHYTAMKSSKDAIQRLSDPKSEV-SAHYLIDE-------AGKVTQLVDEQ 70
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG G W ++NS SIGI L + + FDE QI +L L DI+
Sbjct: 71 KRAWHAGQGCWGEINDINSYSIGIEL--------DYCPSAKCNFDERQISSLEKLLFDIL 122
Query: 149 SQ-FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
+ +I+P++++ H+D+APG K DPG FPW KL G+ W
Sbjct: 123 KRRSEIRPEFIIAHSDMAPGRKFDPGMYFPWKKLS-QKGLSIW 164
>gi|424795080|ref|ZP_18220976.1| exported N-acetylmuramoyl-L-alanine amidase [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422795639|gb|EKU24295.1| exported N-acetylmuramoyl-L-alanine amidase [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 267
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 41/238 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYN-FAHIITAFTSNRAHNLHSSHYVISEKE 72
+P EW + N +D +++HYT + H + S+ + S+HY+I
Sbjct: 35 NPLAEWVPSPN----QDLRRPLLIVIHYTDQDSVQHSLDTLRSHNSKGKVSAHYLIGRD- 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G+ Q+V D RAWH G G+W ++NS SIGI L N G F
Sbjct: 90 ------GRRYQLVSDERRAWHGGAGRWGTITDINSASIGIELDNDGKTA----------F 133
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI +L LL +D+ ++ +I V+GH D AP K+DPGPLFPW +L + G G W +
Sbjct: 134 APAQIDSLLLLLEDLCTRLRIPRTQVVGHEDFAPTRKVDPGPLFPWKRL-AEAGFGRWPA 192
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
F P + L GY I ++ + +RAF H+ N
Sbjct: 193 ---ADTPPAPPGFDP-------------WQALALIGY--PIDDRAATLRAFHHHYRGN 232
>gi|402821991|ref|ZP_10871500.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. LH128]
gi|402264472|gb|EJU14326.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas sp. LH128]
Length = 234
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 31/216 (14%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ + ++LHYT A + A + S+HY+I E+ G + +VP++ RA
Sbjct: 20 LPITMVVLHYTGMKSAEEALERMCDPAAEV-SAHYMIDEE-------GMITSLVPEDKRA 71
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG WR + ++NS SIGI LVN G Y PF E Q+ L L DI+ +
Sbjct: 72 WHAGRSYWRGETDVNSASIGIELVNPG------HEWGYRPFPEPQMDALLPLLADIMDRH 125
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+ H+DIAP K DPG F W +L E+ + + + K Y
Sbjct: 126 DIPRANVVAHSDIAPARKQDPGEYFDWNRL------------GELGLALEIPQAKMNLFY 173
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
G F L+ +GY+ IT+ R+ + AF+ +
Sbjct: 174 DNP---GAFYLALERFGYD--ITDGRAAVTAFQRRW 204
>gi|83949856|ref|ZP_00958589.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseovarius
nubinhibens ISM]
gi|83837755|gb|EAP77051.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Roseovarius
nubinhibens ISM]
Length = 246
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 6 HGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSH 65
G+P +I W + N ++R G L+LH+T A A + S H
Sbjct: 13 EGLPEDLI-----WHPSPNQ-NNRAGGPADTLLLHFTNMETAEAAVARLCCPEAKV-SCH 65
Query: 66 YVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRR-DRNLNSMSIGIHLVNGGVVGEKF 124
YVI+E G+ Q+V + RA+HAG+G W R +++NS +IGI L N G
Sbjct: 66 YVIAED-------GRAWQLVAEERRAFHAGLGGWGRVAQDMNSRTIGIELANRG------ 112
Query: 125 RSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
+PF E Q+ L + + I++++ I P+ V+GH+D+AP K DPGP F W +L
Sbjct: 113 ----NHPFPEPQMRVLEAMMRGIMARWSIPPERVIGHSDMAPDRKDDPGPHFDWQRLAR- 167
Query: 185 YGIGAW 190
G+ W
Sbjct: 168 QGLAVW 173
>gi|399066660|ref|ZP_10748519.1| negative regulator of beta-lactamase expression [Novosphingobium
sp. AP12]
gi|398027822|gb|EJL21353.1| negative regulator of beta-lactamase expression [Novosphingobium
sp. AP12]
Length = 234
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 105/229 (45%), Gaps = 35/229 (15%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ V +LHYT A + + S+HY+I E G V +VP++ RA
Sbjct: 20 LPVTMAVLHYTGMKSGEEALARMCDPEAEV-SAHYMIDED-------GTVTSLVPEDKRA 71
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG WR ++NS SIGI LVN G Y PF E Q+ L L DI+ +
Sbjct: 72 WHAGRAYWRGVTDVNSASIGIELVNPG------HEHGYRPFPEPQMDALTPLLADILDRH 125
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+GH+DIAP K DPG F W +L ++ + V + K Y
Sbjct: 126 DIPRANVVGHSDIAPARKDDPGEYFDWPRL------------GQLGLALDVPRAKMNLFY 173
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADI 260
G F ++ +GY+ IT+ R+ +RAF+ + PE I +I
Sbjct: 174 DNP---GAFYLAMERFGYD--ITDGRAAVRAFQRRW----RPEIIDGEI 213
>gi|395767406|ref|ZP_10447941.1| hypothetical protein MCS_00874 [Bartonella doshiae NCTC 12862]
gi|395414719|gb|EJF81161.1| hypothetical protein MCS_00874 [Bartonella doshiae NCTC 12862]
Length = 319
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 127/308 (41%), Gaps = 82/308 (26%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLPGG----KVIQIVPDN 88
V++L++HYT +F I A T + S+HY++ + E Y+ G ++ +V +N
Sbjct: 19 VRFLVMHYTALDFKASIMALTGEKV----SAHYLVPDPSEQTYIEAGFKDMRIFNLVDEN 74
Query: 89 MRAWHAGIGKW--------------------------------------------RRDRN 104
RAWHAG+ W +D +
Sbjct: 75 ERAWHAGVSSWAGRSNLNDTSIGIEIVNLASGHFDCIEQTYVEAALKDVSVLNPVNKDES 134
Query: 105 LNSMSIGI------------HLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF- 151
+ IG L V + + + P++ QI L L +I+ ++
Sbjct: 135 VVQADIGSWTEERSACGTTPQLETANFVTDNNKGFAFPPYNPTQIDALKSLALNILQRYP 194
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I P V+GH+DIA G K DPG FPW +LY+ GIGAW DE+ + + + +
Sbjct: 195 DIMPTDVVGHSDIALGRKSDPGAAFPWKELYM-AGIGAWYD-DELKAH---YQEQFCKSF 249
Query: 212 PRKLDRGIFLELLKAYGYNVTIT----NKRSVIRAFKTHFSANQNPERIYADITTEDMFW 267
P K D L L YGY+++ + +IRAF+ HF E+ + E
Sbjct: 250 PTKED---ILAKLNCYGYDISAAYTEGGYKDLIRAFQLHF----RQEKYDGILDIETAAI 302
Query: 268 AWALVAKY 275
+AL+ KY
Sbjct: 303 IYALIDKY 310
>gi|89069145|ref|ZP_01156518.1| N-acetylmuramoyl-L-alanine amidase, putative [Oceanicola granulosus
HTCC2516]
gi|89045318|gb|EAR51384.1| N-acetylmuramoyl-L-alanine amidase, putative [Oceanicola granulosus
HTCC2516]
Length = 229
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
W+ + N R G ++LHYT H + S+HY+I+
Sbjct: 8 WQPSPNFGARRGGAVPDLVVLHYTAMESCAAALERLCAAEHEV-SAHYLIAAD------- 59
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G ++Q+V + RAWHAG G W ++NS SIGI L N G PF E Q+
Sbjct: 60 GTLVQLVDETDRAWHAGAGAWGAVDDVNSRSIGIELDNRG----------DDPFPEPQLA 109
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
L L D++++ +I P+ V+GH+D+APG K DPGP FPW +L G+ W D
Sbjct: 110 RLEALLADLLARHRIPPERVIGHSDMAPGRKHDPGPRFPWRRLAR-AGLSVWPDAD 164
>gi|221638692|ref|YP_002524954.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
sphaeroides KD131]
gi|221159473|gb|ACM00453.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodobacter
sphaeroides KD131]
Length = 223
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 19/177 (10%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQ 83
N R+G +++HYT A A + A + S+H+++ E+ G +
Sbjct: 6 NCGPRREGARPDLVVIHYTAMASAEAARARLCDPAAEV-SAHWLVPER-------GDPLA 57
Query: 84 IVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+VP+ +RAWHAG G W ++NS SIGI L N G PF E Q+ L L
Sbjct: 58 LVPEELRAWHAGAGSWGGVTDVNSRSIGIELANPG----------DRPFPEPQMAALERL 107
Query: 144 GKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
I+++++I P V+ H+D+AP K DPGP F W +L G+ W S EA
Sbjct: 108 LAGILARWQIPPARVIAHSDMAPERKCDPGPRFDWRRLARG-GLSVWPSDGCPPAEA 163
>gi|365540100|ref|ZP_09365275.1| N-acetylmuramoyl-L-alanine amidase, partial [Vibrio ordalii ATCC
33509]
Length = 152
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 82/157 (52%), Gaps = 17/157 (10%)
Query: 126 STNYYPFDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD 184
+T + P+ QI L L +I+ ++ + P ++GH+D++PG K DPG LFPW +LYL
Sbjct: 3 TTTFSPYHPQQIAALKSLAINILQRYPDVSPTNIIGHSDVSPGRKSDPGALFPWKELYLS 62
Query: 185 YGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSV----I 240
GIGAW DE T +KF+ P ++ LE LK YGY T T V I
Sbjct: 63 -GIGAWY--DEETKTKYCKKFQTNLP-----NKNDILEKLKTYGYGTTKTEDAQVYQQLI 114
Query: 241 RAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS 277
RAF+ HF PE + E + ++LV KY S
Sbjct: 115 RAFQLHF----RPENYSGKVDIETVAILYSLVDKYKS 147
>gi|325920128|ref|ZP_08182093.1| negative regulator of beta-lactamase expression [Xanthomonas
gardneri ATCC 19865]
gi|325549399|gb|EGD20288.1| negative regulator of beta-lactamase expression [Xanthomonas
gardneri ATCC 19865]
Length = 268
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I +
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVQQSLSTLRGRNSGGRVSAHYLIGDDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D+ RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDDQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI +L +L D+ ++ +I ++GH D+AP K DPGPLFPW +L D G G W +
Sbjct: 133 ASAQIDSLLVLLDDLCTRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRWPA 191
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
A F P + L GY+V + + +RAF H+ N
Sbjct: 192 ---ADAPAAPAGFDP-------------WQALALLGYSV--EDPAATLRAFHHHYRGN 231
>gi|393773247|ref|ZP_10361645.1| negative regulator of AmpC, AmpD [Novosphingobium sp. Rr 2-17]
gi|392721127|gb|EIZ78594.1| negative regulator of AmpC, AmpD [Novosphingobium sp. Rr 2-17]
Length = 234
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 32 MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRA 91
+ V +LHYT A + + S+HY+I E G+V +VP++ RA
Sbjct: 20 LPVSMAVLHYTGMRSAQEALDRMCDPEAEV-SAHYMIDED-------GQVTLLVPEDKRA 71
Query: 92 WHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF 151
WHAG WR ++NS SIGI LVN G Y PF E Q+ L L DI+ +
Sbjct: 72 WHAGQAYWRGVTDVNSASIGIELVNPG------HEWGYRPFPEPQMDALLPLLADIMDRH 125
Query: 152 KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPY 211
I V+GH+DIAP K DPG F WG+L + G + +E K
Sbjct: 126 DIPRANVVGHSDIAPARKQDPGEYFDWGRLG-ELG---------LALEIPTAKMNLFYDN 175
Query: 212 PRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
P G F ++ +GY+ IT R+ + AF+ +
Sbjct: 176 P-----GAFYLAMERFGYD--ITEGRAAVTAFQRRW 204
>gi|254464042|ref|ZP_05077453.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacterales bacterium Y4I]
gi|206684950|gb|EDZ45432.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Rhodobacterales bacterium Y4I]
Length = 231
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
W + N RDG+ ++LHYT A + A + S+HY+I
Sbjct: 15 WHPSPNFGPRRDGLKPSLIVLHYTAMQGAQAALERLCDPAAEV-SAHYLIGAD------- 66
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G + Q+V + RAWHAG G W ++NS SIGI L N G +PF Q+
Sbjct: 67 GTLWQMVAEEHRAWHAGAGAWHGQADINSRSIGIELDNLGT----------HPFSAPQMA 116
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
L L + ++ ++ I V+GH+ +APG K DPGP F W +L
Sbjct: 117 ALEELMRGVMQRWGIPAPGVIGHSCMAPGRKFDPGPRFDWNRL 159
>gi|344205528|ref|YP_004790669.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Stenotrophomonas maltophilia JV3]
gi|343776890|gb|AEM49443.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Stenotrophomonas maltophilia JV3]
Length = 248
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 74 SAHYLIGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG---- 122
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
RS PF QI +L +L +D+ ++ I P+ ++GH D+AP K DP FPW +L
Sbjct: 123 --RS----PFSAAQIESLIVLLRDLTTRLNIPPRQLIGHADLAPTRKQDPSRFFPWQQLA 176
Query: 183 LDYGIGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
+ G G W L + TV A R+F+ P+ LD
Sbjct: 177 -EAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNRDATVAAFHRRFRGRDDLPKTLD 233
>gi|289669997|ref|ZP_06491072.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 268
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 41/238 (17%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVQQSLSTLRGRNSGGRVSAHYLIGNDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDAQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLS 192
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L + G G W S
Sbjct: 133 APAQIDSLLVLLDDLCKRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-EAGFGRWPS 191
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSAN 250
D A F P + L GY +I + + ++AF H+ +N
Sbjct: 192 AD---APAAPEGFDP-------------WQALALIGY--SIDDPAATLQAFHHHYRSN 231
>gi|418019545|ref|ZP_12659009.1| Negative regulator of beta-lactamase expression, partial
[Candidatus Regiella insecticola R5.15]
gi|347605101|gb|EGY29603.1| Negative regulator of beta-lactamase expression [Candidatus
Regiella insecticola R5.15]
Length = 191
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK-I 153
GI W NLN +IGI +VN + + + PF++ QI + L DI+ ++ I
Sbjct: 1 GISTWGNRTNLNDSAIGIEIVNQATDVQGVFT--FPPFNDRQIEAVKALSLDILQRYSDI 58
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
P +V+GH DIA G K DPG FPW LY D G+GAW DE A +F
Sbjct: 59 SPTHVVGHADIAVGRKSDPGAAFPWKTLY-DAGVGAWY--DEEIKSAYTEQFTTT----- 110
Query: 214 KLDRGIFLELLKAYGYNVT-----ITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
L + L K YGY+++ N + ++RAF+ HF R ++ TE
Sbjct: 111 PLTQADALVRFKKYGYDISGAATDSANYKKLVRAFQLHF----RQSRYDGELDTETSAIL 166
Query: 269 WALVAKY 275
ALV KY
Sbjct: 167 AALVKKY 173
>gi|110679281|ref|YP_682288.1| N-acetylmuramoyl-L-alanine amidase [Roseobacter denitrificans OCh
114]
gi|109455397|gb|ABG31602.1| N-acetylmuramoyl-L-alanine amidase, putative [Roseobacter
denitrificans OCh 114]
Length = 224
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 29 RDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDN 88
R+ ++ +++HYT A A + + S+HY+I G V Q+V +
Sbjct: 27 RNSLTPILIVIHYTAMASAEAAIARLCDPQAEV-SAHYLIDRS-------GPVTQMVNEE 78
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
RAWHAG+G+WR ++NS SIGI L N G +PF E Q+ L L + I
Sbjct: 79 HRAWHAGVGEWRGLTDINSRSIGIELDNDGT----------HPFPEPQMAALEDLLRGIR 128
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSP 193
S++ + ++GH+D+APG K DPGP F W +L G+ A +SP
Sbjct: 129 SRWPVAASDIIGHSDMAPGRKSDPGPRFDWARLAR-QGLAAPVSP 172
>gi|383643450|ref|ZP_09955856.1| N-acetylmuramoyl-L-alanine amidase [Sphingomonas elodea ATCC 31461]
Length = 233
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 109/243 (44%), Gaps = 43/243 (17%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
V ++LHYT A + + S+HY+I E G++ ++V + RAWH
Sbjct: 22 VSMIVLHYTGMESGEAALARLRDPEAQV-SAHYLIEED-------GRIFRLVDEGKRAWH 73
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKI 153
AG WR + ++NS SIGI +VN G Y PF Q+ +L L DI + I
Sbjct: 74 AGRSHWRGNDDVNSASIGIEIVNPG------HEFGYRPFTAEQMSSLIPLVADIKERHGI 127
Query: 154 KPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPR 213
V+GH+D+AP K DPG LF W L A +R P RP
Sbjct: 128 TRGNVVGHSDVAPARKQDPGELFNWHAL------------------ARLRLALP-RPTRN 168
Query: 214 KLD----RGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAW 269
+D G F+ L+ +GY+V T+ + + AF+ F PE I +I E
Sbjct: 169 LVDPGWPDGGFMLALERFGYDV--TDPVAAVTAFQRRF----RPELIDGEIDMECRCILL 222
Query: 270 ALV 272
AL+
Sbjct: 223 ALL 225
>gi|408825374|ref|ZP_11210264.1| N-acetylmuramoyl-L-alanine amidase [Pseudomonas geniculata N1]
Length = 248
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 18/128 (14%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY+I +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 74 SAHYLIGADGHRY-------QLVADVRRAWHAGAGRWGTITDLNSASIGIELDNDG---- 122
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
RS PF QI +L +L +D+ ++ I P+ V+ H D+AP K DP FPW +L
Sbjct: 123 --RS----PFSAAQIESLIVLLRDLTTRLNIPPRQVIAHADLAPTRKQDPSRFFPWQQLA 176
Query: 183 LDYGIGAW 190
+ G GAW
Sbjct: 177 -EAGFGAW 183
>gi|194363893|ref|YP_002026503.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Stenotrophomonas maltophilia R551-3]
gi|194346697|gb|ACF49820.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Stenotrophomonas maltophilia R551-3]
Length = 252
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 102/234 (43%), Gaps = 55/234 (23%)
Query: 12 VIDPFPEWEKNRNHYDSRDGMSVKYLILHYT----VYNFAHII-TAFTSNRAHNLHSSHY 66
V +P W + N ++ + +++H+T V H + TA + R S+HY
Sbjct: 30 VHNPLATWVPSPN----QNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGRV----SAHY 81
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
+I +Y Q+V D RAWHAG G+W +LNS SIGI L N G
Sbjct: 82 LIGADGHRY-------QLVADERRAWHAGAGRWGTITDLNSASIGIELDNDG-------- 126
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYG 186
PF QI +L +L +D+ + I P+ V+GH D+AP K DP FPW +L + G
Sbjct: 127 --RSPFSPVQIESLIVLLRDLAERLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLA-EAG 183
Query: 187 IGAW------------------------LSPDEMTVEAIVRKFKPARPYPRKLD 216
G W L E T+ A R+F+ P+ LD
Sbjct: 184 FGVWPRAADGAAPEGFDAWNALARFGYPLDNREATIAAFHRRFRGRDDLPKTLD 237
>gi|418472835|ref|ZP_13042525.1| N-acetylmuramoyl-L-alanine amidase domain protein, partial
[Streptomyces coelicoflavus ZG0656]
gi|371546549|gb|EHN75019.1| N-acetylmuramoyl-L-alanine amidase domain protein, partial
[Streptomyces coelicoflavus ZG0656]
Length = 109
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+HY++ E G++ Q+ P+ RAWHAG G WR + + N++SIGI +VN G
Sbjct: 4 SAHYLVEED-------GRIFQLAPEERRAWHAGRGVWRGEDDCNAVSIGIEIVNPG---- 52
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
Y PF E QI + L +I ++ I ++GH+D+AP K DPG LFPW +L
Sbjct: 53 --HEFGYRPFPEAQIAAVIALIGEIRQRWTIPDNRIIGHSDLAPDRKADPGELFPWKRL 109
>gi|254474354|ref|ZP_05087740.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ruegeria sp. R11]
gi|214028597|gb|EEB69432.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Ruegeria sp. R11]
Length = 228
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
W + N+ RDG+S +++HYT + A + + S+HY+I
Sbjct: 10 WRPSPNYGPRRDGLSPHLIVIHYTAMDSAEAALERLCDPEAEV-SAHYLIGAD------- 61
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G + Q+V + RAWHAG G+W ++NS SIGI L N G +PF Q+
Sbjct: 62 GTLWQMVREADRAWHAGAGQWAGLDDINSRSIGIELDNRG----------DHPFGAAQMT 111
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
L + I++++ I P V+GH+ +APG K DPGP F W +L
Sbjct: 112 RLEQVLGGIMARWSIAPDGVIGHSCMAPGRKFDPGPRFDWPRL 154
>gi|381170765|ref|ZP_09879919.1| N-acetylmuramoyl-L-alanine amidase family protein [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|380688817|emb|CCG36406.1| N-acetylmuramoyl-L-alanine amidase family protein [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
Length = 268
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 133 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 189
>gi|294666732|ref|ZP_06731967.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603477|gb|EFF46893.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 315
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 81 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 136
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 137 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 179
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 180 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRL-ADAGFGRW 236
>gi|21244584|ref|NP_644166.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
citri str. 306]
gi|21110262|gb|AAM38702.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 268
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 133 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 189
>gi|390990353|ref|ZP_10260640.1| N-acetylmuramoyl-L-alanine amidase family protein [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372554916|emb|CCF67615.1| N-acetylmuramoyl-L-alanine amidase family protein [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 268
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 133 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 189
>gi|294626504|ref|ZP_06705103.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599194|gb|EFF43332.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 315
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 81 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 136
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 137 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 179
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 180 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRL-ADAGFGRW 236
>gi|254559628|ref|YP_003066723.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens
DM4]
gi|254266906|emb|CAX22705.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium
extorquens DM4]
Length = 250
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 121/246 (49%), Gaps = 40/246 (16%)
Query: 28 SRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
+R G S+ LILHYT A + + + S+HY + E G+V+Q+VP+
Sbjct: 21 ARVGDSLDMLILHYTGMPTAQGALERLCDPSAEV-SAHYFVFED-------GRVVQMVPE 72
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG G W R++NS SIGI + + G G P+ E QI + L +DI
Sbjct: 73 ADRAWHAGAGAWAGVRDINSRSIGIEIAHPGHAG------GLPPYPEVQIAAVARLARDI 126
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V + I VL H+D+AP K DPG FPW +L + G+G W+ P A VR +
Sbjct: 127 VVRRAIPGPRVLAHSDVAPARKEDPGEDFPWERLARE-GVGHWVPP------APVRDGR- 178
Query: 208 ARPYPRKLDRGIFLELLKA----YGYNVTITN-----KRSVIRAFKTHFSANQNPERI-- 256
+ D G +E L+A YGY +T R+V+ AF+ HF P RI
Sbjct: 179 ---FFAMGDTGQPVEALQAMLALYGYEQPVTGHFDAAMRAVVTAFQRHF----RPARIDG 231
Query: 257 YADITT 262
AD +T
Sbjct: 232 VADSST 237
>gi|418515575|ref|ZP_13081755.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418522995|ref|ZP_13089022.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700470|gb|EKQ59023.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410707873|gb|EKQ66323.1| N-acetylmuramoyl-L-alanine amidase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 268
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+P +W + N YD+R + ++LH+T ++ ++ + S+HY+I E
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDG 89
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
+Y Q+V D RAWH G G+W ++NS SIGI L N G PF
Sbjct: 90 QRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SEPF 132
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 133 APAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 189
>gi|389794128|ref|ZP_10197287.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter fulvus Jip2]
gi|388432914|gb|EIL89898.1| N-acetylmuramoyl-L-alanine amidase [Rhodanobacter fulvus Jip2]
Length = 256
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAH--IITAFTSNRAHNLHSSHYVISEK 71
+P W + NH D ++LHYT + + T T+N + S+HY+I
Sbjct: 32 NPLATWVPSPNH----DVRRPVLIVLHYTDQDSVQQSLHTLRTANSGGPV-SAHYLIGAD 86
Query: 72 EGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYP 131
G + Q+V D +RAWH G G+W ++NS SIGI L N G P
Sbjct: 87 -------GHIYQLVADQLRAWHGGPGRWGTITDINSASIGIELDNDGAT----------P 129
Query: 132 FDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
F + QI L L D+ ++ I ++GH D AP K+DPGPLFPW +L G G W
Sbjct: 130 FAQPQIAGLLRLLADLTTRLHIPSTQIVGHEDFAPTRKVDPGPLFPWQQLAA-AGYGLW 187
>gi|295136519|ref|YP_003587195.1| N-acetylmuramoyl-L-alanine amidase [Zunongwangia profunda SM-A87]
gi|294984534|gb|ADF54999.1| N-acetylmuramoyl-L-alanine amidase [Zunongwangia profunda SM-A87]
Length = 319
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 106/238 (44%), Gaps = 51/238 (21%)
Query: 36 YLILHYTVYNFA-HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
++++H+T + + FT R SSHYVI + G V ++ + RAWH
Sbjct: 75 FVVIHHTAQDSTIQTLNTFTIPRTQ--VSSHYVIGDD-------GAVFHMLNNYYRAWHG 125
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
G+G+W +LNS SIGI L N G F E QI +L + K + +KI
Sbjct: 126 GVGQWGHTTDLNSASIGIELDNNGKEA----------FSEAQISSLLDVLKQLKEDYKIP 175
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW---------------LSPDEMTVE 199
+GH DIAPG K DP FPW +L + G G W + + + ++
Sbjct: 176 AANFVGHLDIAPGRKTDPSADFPWKRL-AEEGYGIWYDAERIENIQFEHQFFTENHLKID 234
Query: 200 AIVRKFKPARPYPRKLDRGIF----------LELLKAYGYNVTITNKRSVIRAFKTHF 247
I FK P LDR +F E L+ GYN I + + I++F+ HF
Sbjct: 235 NINPAFKQRIPL---LDRYLFPDVIPSDFTIAEALRIIGYN--IDDLDAAIKSFQIHF 287
>gi|340027719|ref|ZP_08663782.1| N-acetylmuramoyl-L-alanine amidase [Paracoccus sp. TRP]
Length = 196
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
S+H++I E G +VP++ RAWHAG G W ++NS SIGI L N G
Sbjct: 19 SAHWLIHED-------GTTEALVPEDRRAWHAGAGSWLGREDVNSRSIGIELANPG---- 67
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
PF E Q+ L L +I++++ I P+ V+ H+D+APG K+DPGP F W +L
Sbjct: 68 ------DRPFPEPQMAALETLLAEIMARWSISPRDVIAHSDLAPGRKIDPGPRFDWRRLA 121
Query: 183 LDYGIGAW 190
L G+ W
Sbjct: 122 L-QGLAIW 128
>gi|163850374|ref|YP_001638417.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens
PA1]
gi|163661979|gb|ABY29346.1| N-acetylmuramoyl-L-alanine amidase family 2 [Methylobacterium
extorquens PA1]
Length = 250
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 121/246 (49%), Gaps = 40/246 (16%)
Query: 28 SRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
+R G S+ LILHYT A + + + S+HY + E G+V+Q+VP+
Sbjct: 21 ARVGDSLDMLILHYTGMPTAQGALERLCDPSAEV-SAHYFVFED-------GRVVQMVPE 72
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI 147
RAWHAG G W R++NS SIGI + + G G P+ E QI + L +DI
Sbjct: 73 ADRAWHAGAGAWAGVRDINSRSIGIEIAHPGHAG------GLPPYPEAQIAAVIALARDI 126
Query: 148 VSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP 207
V + I VL H+D+AP K DPG FPW +L + G+G W+ P A VR +
Sbjct: 127 VLRHAIPGPRVLAHSDVAPARKEDPGEDFPWERLARE-GVGHWVPP------APVRDGR- 178
Query: 208 ARPYPRKLDRGIFLELLKA----YGYNVTITNK-----RSVIRAFKTHFSANQNPERI-- 256
+ D G +E L+A YGY +T R+V+ AF+ HF P RI
Sbjct: 179 ---FFAMGDTGQPVEALQAMLALYGYEQPVTGHFDAAMRAVVTAFQRHF----RPARIDG 231
Query: 257 YADITT 262
AD +T
Sbjct: 232 VADSST 237
>gi|240137450|ref|YP_002961921.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens
AM1]
gi|418064307|ref|ZP_12701827.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium extorquens DSM 13060]
gi|240007418|gb|ACS38644.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium
extorquens AM1]
gi|373548841|gb|EHP75522.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Methylobacterium extorquens DSM 13060]
Length = 250
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 124/259 (47%), Gaps = 40/259 (15%)
Query: 15 PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGK 74
P E + +R G S+ LILHYT A + + + S+HY + E
Sbjct: 8 PLAEAVVASPNRGARVGDSLDMLILHYTGMPTAQGALERLCDPSAEV-SAHYFVFED--- 63
Query: 75 YLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDE 134
G+V+Q+VP+ RAWHAG G W R++NS SIGI + + G G P+ E
Sbjct: 64 ----GRVMQMVPEADRAWHAGAGAWAGVRDINSRSIGIEIAHPGHAG------GLPPYPE 113
Query: 135 NQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPD 194
QI + L +DIV + I VL H+D+AP K DPG FPW +L + G+G W+ P
Sbjct: 114 AQIAAVIALARDIVVRRAIPGPRVLAHSDVAPARKEDPGEDFPWERLARE-GVGHWVPP- 171
Query: 195 EMTVEAIVRKFKPARPYPRKLDRGIFLELLKA----YGYNVTITN-----KRSVIRAFKT 245
A VR + + D G +E L+A YGY +T R+V+ AF+
Sbjct: 172 -----APVRDGR----FFAMGDTGQPVEALQAMLALYGYEQPVTGHFDAAMRAVVTAFQR 222
Query: 246 HFSANQNPERI--YADITT 262
HF P RI AD +T
Sbjct: 223 HF----RPARIDGVADSST 237
>gi|159045323|ref|YP_001534117.1| hypothetical protein Dshi_2783 [Dinoroseobacter shibae DFL 12]
gi|157913083|gb|ABV94516.1| hypothetical protein Dshi_2783 [Dinoroseobacter shibae DFL 12]
Length = 212
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 22/149 (14%)
Query: 35 KYLILHYTVYNFAHIITA-FTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+ ++LHYT A + RA S+HYVI G V+++VP+++RAWH
Sbjct: 3 RLVVLHYTAMADAQGAADWLCAPRAQV--SAHYVIGRD-------GAVMRLVPEHLRAWH 53
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTL-GLLGKDIVSQFK 152
AG G W ++NS SIGI L N G PF + L GLLG DI+++
Sbjct: 54 AGAGAWGGCTDVNSASIGIELDNDGT----------SPFSAPLMDALEGLLG-DILTRHG 102
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
I + V+GH+D+APG K+DPGP F W +L
Sbjct: 103 IPRKGVIGHSDLAPGRKIDPGPRFDWRRL 131
>gi|374375221|ref|ZP_09632879.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Niabella soli DSM 19437]
gi|373232061|gb|EHP51856.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Niabella soli DSM 19437]
Length = 355
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 98/218 (44%), Gaps = 36/218 (16%)
Query: 30 DGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNM 89
D ++ILH+T A T FT + S+H+V+ G Q++ + M
Sbjct: 149 DARKPNFVILHHTAQTSAEQ-TLFTFSITRTGVSAHFVVGRD-------GLTYQMLNEYM 200
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
RAWHAG +W ++NS SIGI + N G PF E Q+ +L L + +
Sbjct: 201 RAWHAGKSRWGAITDMNSCSIGIEIDNNGEE----------PFSEPQVESLLKLLGYLKN 250
Query: 150 QFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPAR 209
+F I +GH DIAPG K DP FPW +L D G G W D ++ F
Sbjct: 251 KFGIPQANFIGHADIAPGRKDDPSKYFPWKRL-ADAGFGYWY--DSTNLQQPPADFNA-- 305
Query: 210 PYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
L L+ GY+V +N + I++FK HF
Sbjct: 306 -----------LLALRVIGYDV--SNPATAIKSFKLHF 330
>gi|325928829|ref|ZP_08189996.1| negative regulator of beta-lactamase expression [Xanthomonas
perforans 91-118]
gi|325540802|gb|EGD12377.1| negative regulator of beta-lactamase expression [Xanthomonas
perforans 91-118]
Length = 268
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 27/180 (15%)
Query: 14 DPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH---SSHYVISE 70
+P +W + N YD+R + ++LH+T + + + ++ R N S+HY+I E
Sbjct: 34 NPLAQWVPSPN-YDTRRPI---LIVLHFT--DQQSVRQSLSTLRGRNSGGRVSAHYLIGE 87
Query: 71 KEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY 130
+Y Q+V D RAWH G G+W ++NS SIGI L N G
Sbjct: 88 DGQRY-------QLVSDGQRAWHGGAGRWGTITDINSASIGIELDNDG----------SE 130
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
PF QI +L +L D+ + +I ++GH D+AP K DPGPLFPW +L D G G W
Sbjct: 131 PFAPAQIDSLLVLLDDLCQRLRIPRTQIVGHEDVAPTRKNDPGPLFPWKRLA-DAGFGRW 189
>gi|256420503|ref|YP_003121156.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Chitinophaga pinensis DSM 2588]
gi|256035411|gb|ACU58955.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Chitinophaga pinensis DSM 2588]
Length = 275
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 36 YLILHYTVYNFAHI-ITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHA 94
Y+I+H+T FT R S+HYVI + G + ++ D +RAWHA
Sbjct: 73 YVIIHHTAQGSCDTTFNTFTLPRTQ--VSAHYVICKD-------GTINHMLNDYLRAWHA 123
Query: 95 GIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIK 154
GI KW ++NS SIGI L N G+ PF QI++L +L + +F I
Sbjct: 124 GIAKWGNVTDMNSCSIGIELDNNGLT----------PFQPQQINSLLVLLDSLKHRFNIP 173
Query: 155 PQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRK 214
+GH DIAPG K+DP FPW +L + G G W + I F
Sbjct: 174 AANFIGHGDIAPGRKVDPSAWFPWQQL-AEKGFGLWYGDTSKII--IPGDFSSK------ 224
Query: 215 LDRGIFLELLKAYGYNVTITNKRSVIRAFKTHF 247
+ L+ GY+ T + I+AFK HF
Sbjct: 225 -------QALRIVGYDTRDT--VAAIKAFKRHF 248
>gi|114800083|ref|YP_759210.1| N-acetylmuramoyl-L-alanine amidase [Hyphomonas neptunium ATCC
15444]
gi|114740257|gb|ABI78382.1| N-acetylmuramoyl-L-alanine amidase [Hyphomonas neptunium ATCC
15444]
Length = 244
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLH-SSHYVISEKEGKYLPGGKVIQIVPDNMRAW 92
V L+LHYT A T R S+HY++ E G++ ++V +N RAW
Sbjct: 18 VTLLVLHYTGMESGE--AALTRMRDPEAKVSAHYMVWED-------GRIARLVAENDRAW 68
Query: 93 HAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN--YYPFDENQIHTLGLLGKDIVSQ 150
HAG+ W+ +LNS S+GI +VNG G + + P+ + QI + L ++I++
Sbjct: 69 HAGVSTWQSLEDLNSRSVGIEIVNG---GHDYPAPGGALPPYPDAQITAVIALAREIMAH 125
Query: 151 FKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
I ++ H+DIAP K+DPG FPW +L + G+G W
Sbjct: 126 HDIPATGLVAHSDIAPARKIDPGEHFPWQRLA-EAGLGLW 164
>gi|344923107|ref|ZP_08776568.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
[Candidatus Odyssella thessalonicensis L13]
Length = 292
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 124/273 (45%), Gaps = 55/273 (20%)
Query: 15 PFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFT---SNRAHNLHSSHYVISEK 71
P+ E +++SR G ++ +I+H + + FT ++ S HY+I +
Sbjct: 2 PYDIIEIPSENFNSRAGTEIELIIIHAVGLDLETTLRGFTFKNGDKGGLGVSPHYLIPQM 61
Query: 72 EG-----------------KYLPGGKVIQIVPDNMRAWHAGIGKWRR-------DRNLNS 107
+Y VI+ V + RAWHAG KW +++LNS
Sbjct: 62 TAEAFLTAFAEKFNLRCTPRYPHQVPVIKCVDEKDRAWHAGTSKWGTFNARPGCEQSLNS 121
Query: 108 MSIGI--HLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIA 165
SIGI H G+ GE + ++ PF Q+ T L KDI + I+P ++GH+DIA
Sbjct: 122 CSIGIEFHTPGYGLGGEDW--FHFTPFTIEQMATGAELIKDISQRHHIQPANLIGHSDIA 179
Query: 166 PGS----KMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKP--ARPYPRKLDRGI 219
P K DPGPLFPW LY ++ +G W S + + + +P ++ Y R+
Sbjct: 180 PWHPSYIKTDPGPLFPWKWLYEEHQLGIWPS-----LATKLERLEPENSQDYVRR----- 229
Query: 220 FLELLKAYGYNVTITNK-----RSVIRAFKTHF 247
L+ GYNV + + R I AF+ HF
Sbjct: 230 ---QLQKIGYNVCQSLEWTDLDRHSINAFRMHF 259
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,001,430,430
Number of Sequences: 23463169
Number of extensions: 221091706
Number of successful extensions: 413557
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 538
Number of HSP's that attempted gapping in prelim test: 408507
Number of HSP's gapped (non-prelim): 2475
length of query: 278
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 138
effective length of database: 9,074,351,707
effective search space: 1252260535566
effective search space used: 1252260535566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)