BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13666
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P75820|AMID_ECOLI N-acetylmuramoyl-L-alanine amidase AmiD OS=Escherichia coli (strain
K12) GN=amiD PE=1 SV=1
Length = 276
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
+D LELL YGY+V T +R VI AF+ HF P + E A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266
Query: 269 WALVAKYGS 277
AL+ KYG
Sbjct: 267 EALLEKYGQ 275
>sp|P82973|AMPD_ENTCL 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Enterobacter
cloacae GN=ampD PE=3 SV=1
Length = 187
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+V+Q VP + RAWHAG+ ++ N SIGI L T+ P+ + Q
Sbjct: 82 GEVVQYVPFDKRAWHAGVSMYQGRERCNDFSIGIEL----------EGTDTTPYTDAQYE 131
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
L + + ++ ++ + GH+DIAP K DPGP F W + +
Sbjct: 132 KLVAVTQTLIGRYPAIADNITGHSDIAPERKTDPGPAFDWSRFH 175
>sp|P13016|AMPD_ECOLI 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Escherichia
coli (strain K12) GN=ampD PE=2 SV=1
Length = 183
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 53 FTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGI 112
F + AH S+H +I G+++Q VP + RAWHAG+ +++ N SIGI
Sbjct: 63 FFAEIAHLRVSAHCLIRRD-------GEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGI 115
Query: 113 HLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDP 172
L T+ + + Q L + + ++ + + + GH DIAP K DP
Sbjct: 116 EL----------EGTDTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDP 165
Query: 173 GPLFPWGKL 181
GP F W +
Sbjct: 166 GPAFDWARF 174
>sp|E1W818|AMPD_SALTS 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Salmonella
typhimurium (strain SL1344) GN=ampD PE=3 SV=1
Length = 187
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 53 FTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGI 112
F + AH S+H +I G+++Q VP + RAWHAG+ ++ N SIGI
Sbjct: 63 FFAEIAHLRVSAHCLIRRD-------GEIVQYVPFDKRAWHAGVSNYQGRERCNDFSIGI 115
Query: 113 HLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDP 172
L T+ + + Q L + + +++ + + GH +IAP K DP
Sbjct: 116 EL----------EGTDTLAYTDAQYQQLAAVTRTLIASYPAIADNMTGHCNIAPDRKTDP 165
Query: 173 GPLFPWGKL 181
GP F W +
Sbjct: 166 GPAFDWPRF 174
>sp|P82974|AMPD_CITFR 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Citrobacter
freundii GN=ampD PE=1 SV=1
Length = 187
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 58 AHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNG 117
AH S+H +I G+++Q VP + RAWHAG+ ++ N SIGI L
Sbjct: 68 AHLRVSAHCLIRRD-------GEIVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIEL--- 117
Query: 118 GVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP 177
T+ + + Q L + +++++ + GH +IAP K DPGP F
Sbjct: 118 -------EGTDTLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGPSFD 170
Query: 178 WGKL 181
W +
Sbjct: 171 WARF 174
>sp|P0CL03|AMPD_SALTY 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ampD PE=3 SV=1
Length = 187
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 53 FTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGI 112
F + AH S+H +I G+++Q VP + RAWHAG+ ++ N SIGI
Sbjct: 63 FFAEIAHLRVSAHCLIRRD-------GEIVQYVPFDKRAWHAGVSNYQGRERCNDFSIGI 115
Query: 113 HLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDP 172
L T+ + + Q L + + +++ + + GH +I P K DP
Sbjct: 116 EL----------EGTDTLAYTDAQYQQLAAVTRTLIASYPAIADNMTGHCNITPDRKTDP 165
Query: 173 GPLFPWGKL 181
GP F W +
Sbjct: 166 GPAFDWPRF 174
>sp|P44624|AMPD_HAEIN 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=ampD PE=3 SV=1
Length = 184
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G++ Q V N RAWHAG+ ++ N +IGI L +N PF + Q
Sbjct: 86 GRITQYVNFNDRAWHAGVSNFQGREKCNDFAIGIEL----------EGSNEQPFTDAQYF 135
Query: 139 TLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
+L L I+ + KI ++GH DI+P K+DPG F W +
Sbjct: 136 SLQELTNVIMKSYPKITKDRIVGHCDISPKRKIDPGQYFDWER 178
>sp|Q92IC3|Y497_RICCN Putative N-acetylmuramoyl-L-alanine amidase RC0497 OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=RC0497 PE=3
SV=1
Length = 267
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 36/181 (19%)
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVS 149
+A++AG W+ + +N IG+ L+N F QI L KD+
Sbjct: 79 QAFYAGKSSWKGEVGVNKFGIGVMLINDA----------KSDFPAEQIGKLKEFLKDVTE 128
Query: 150 QFKIKPQYVLGHTDIAPG---------SKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEA 200
++ P L H + G + + PG FPW +L + G G + E T E
Sbjct: 129 RY---PNLDLKHDLVGLGEVTVNREGNAHIAPGSKFPWKEL-AEAGFGRYF---ETTQEQ 181
Query: 201 IVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSA---NQN 252
+ K++ E LK YGY V T+ + +R F + N+
Sbjct: 182 KSKLLLSLDSTGEKVN--TLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEE 239
Query: 253 P 253
P
Sbjct: 240 P 240
>sp|Q64514|TPP2_MOUSE Tripeptidyl-peptidase 2 OS=Mus musculus GN=Tpp2 PE=2 SV=3
Length = 1262
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 35/188 (18%)
Query: 38 ILHYTV--YNFAHIITAFTSNRAHNLH-----SSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+L+Y+V Y+ ++++ TS AH H + H+ + PG +++ I
Sbjct: 241 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSI------ 294
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNG--GVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
IG D L++M G L+ V+ K NY + G + + I
Sbjct: 295 ----KIG----DTRLSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVI- 345
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLF-----PWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ V H I S + GP P G G+GA++SPD M E +R
Sbjct: 346 ------NEAVWKHNTIYVSSAGNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLR 399
Query: 204 KFKPARPY 211
+ PA Y
Sbjct: 400 EKLPANQY 407
>sp|Q64560|TPP2_RAT Tripeptidyl-peptidase 2 OS=Rattus norvegicus GN=Tpp2 PE=2 SV=3
Length = 1249
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 35/188 (18%)
Query: 38 ILHYTV--YNFAHIITAFTSNRAHNLH-----SSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+L+Y+V Y+ ++++ TS AH H + H+ + PG +++ I
Sbjct: 241 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSI------ 294
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNG--GVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
IG D L++M G L+ V+ K NY + G + + I
Sbjct: 295 ----KIG----DTRLSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVI- 345
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLF-----PWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ V H I S + GP P G G+GA++SPD M E +R
Sbjct: 346 ------NEAVWKHNTIYVSSAGNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLR 399
Query: 204 KFKPARPY 211
+ PA Y
Sbjct: 400 EKLPANQY 407
>sp|P29144|TPP2_HUMAN Tripeptidyl-peptidase 2 OS=Homo sapiens GN=TPP2 PE=1 SV=4
Length = 1249
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 35/188 (18%)
Query: 38 ILHYTV--YNFAHIITAFTSNRAHNLH-----SSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+L+Y+V Y+ ++++ TS AH H + H+ + PG +++ I
Sbjct: 241 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSI------ 294
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNG--GVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
IG D L++M G L+ V+ K NY + G + + I
Sbjct: 295 ----KIG----DTRLSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVI- 345
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLF-----PWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ V H I S + GP P G G+GA++SPD M E +R
Sbjct: 346 ------NEAVWKHNIIYVSSAGNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLR 399
Query: 204 KFKPARPY 211
+ PA Y
Sbjct: 400 EKLPANQY 407
>sp|A5PK39|TPP2_BOVIN Tripeptidyl-peptidase 2 OS=Bos taurus GN=TPP2 PE=2 SV=1
Length = 1249
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 35/188 (18%)
Query: 38 ILHYTV--YNFAHIITAFTSNRAHNLH-----SSHYVISEKEGKYLPGGKVIQIVPDNMR 90
+L+Y+V Y+ ++++ TS AH H + H+ + PG +++ I
Sbjct: 241 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSI------ 294
Query: 91 AWHAGIGKWRRDRNLNSMSIGIHLVNG--GVVGEKFRSTNYYPFDENQIHTLGLLGKDIV 148
IG D L++M G L+ V+ K NY + G + + I
Sbjct: 295 ----KIG----DTRLSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVI- 345
Query: 149 SQFKIKPQYVLGHTDIAPGSKMDPGPLF-----PWGKLYLDYGIGAWLSPDEMTVEAIVR 203
+ V H I S + GP P G G+GA++SPD M E +R
Sbjct: 346 ------NEAVWKHNIIYVSSAGNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLR 399
Query: 204 KFKPARPY 211
+ PA Y
Sbjct: 400 EKLPANQY 407
>sp|P24808|CWLA_BACSU N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus subtilis
(strain 168) GN=cwlA PE=1 SV=1
Length = 272
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 32 MSVKYLILHYTVYNF--AHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNM 89
M +Y+ +H T + A+ I+ +N + S H+ + +K+ VIQ +P N
Sbjct: 23 MKAEYITIHNTANDASAANEISYMKNNSSST--SFHFAVDDKQ--------VIQGIPTNR 72
Query: 90 RAWHAGIGKWRRDRNLNSMSIGIHLV---NGGV 119
AWH G G + N SIG+ + +GGV
Sbjct: 73 NAWHTGDG---TNGTGNRKSIGVEICYSKSGGV 102
>sp|P08764|T3RE_BPP1 Type III restriction-modification system EcoPI enzyme res
OS=Enterobacteria phage P1 GN=res PE=3 SV=1
Length = 970
Score = 32.3 bits (72), Expect = 3.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 89 MRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLL 143
+R +G K+ + + N S+G +L++G + KF + + P DE LG+L
Sbjct: 785 IRKIKSGFSKYLLNNSFNKFSLGYNLISGSIHPTKFTNADGKPLDEVLSSDLGVL 839
>sp|P14892|CWLA_BACSP N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus sp. GN=cwlA
PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 38 ILHYTVYNFAHIITAFTSNRAHNLH--SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAG 95
I + YN A I +N A+N S H + +KE IQ++P N AWHAG
Sbjct: 26 ITFHNTYNDAPAINE-RNNVANNSTGTSFHIAVDDKEA--------IQLIPFNRNAWHAG 76
Query: 96 IGKWRRDRNLNSMSIGIHLVNGGVVGEKFR 125
G R N SIG+ + G ++R
Sbjct: 77 DGTNGRG---NRHSIGVEICYSQSGGARYR 103
>sp|O34391|XLYB_BACSU N-acetylmuramoyl-L-alanine amidase XlyB OS=Bacillus subtilis
(strain 168) GN=xlyB PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 30 DGMSVKYLILHYTVYNF--AHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPD 87
+ MS +Y+ +H T + A+ I+ N + S H+ + ++E VIQ +P
Sbjct: 21 NAMSAEYITIHNTANDASAANEISYMIGNTSST--SFHFAVDDQE--------VIQGLPL 70
Query: 88 NMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
N AWH G G + N SIG+ + G K+ +
Sbjct: 71 NRNAWHTGDG---TNGPGNRKSIGVEICYSKSGGPKYEAA 107
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 31.6 bits (70), Expect = 6.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 27 DSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNL--HSSHYVISEKEGKYLP 77
D +D M+ K + H V F + ++S HNL H+ H++ +E+ KYLP
Sbjct: 802 DCKDKMTEKRALQHSRVPTF--LADFYSSPHLHNLFRHTEHHLNNEQTSKYLP 852
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,425,734
Number of Sequences: 539616
Number of extensions: 5191856
Number of successful extensions: 10132
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10111
Number of HSP's gapped (non-prelim): 23
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)