Your job contains 1 sequence.
>psy13666
MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHN
LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV
GEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK
LYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVI
RAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13666
(278 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P75820 - symbol:amiD species:83333 "Escherichia... 385 1.2e-35 1
TIGR_CMR|CBU_0379 - symbol:CBU_0379 "N-acetylmuramoyl-L-a... 369 5.8e-34 1
TIGR_CMR|SPO_2967 - symbol:SPO_2967 "N-acetylmuramoyl-L-a... 216 9.5e-18 1
UNIPROTKB|Q48N97 - symbol:ampD "N-acetyl-anhydromuramyl-L... 172 5.8e-13 1
UNIPROTKB|Q602L1 - symbol:ampD "N-acetyl-anhydromuramyl-L... 168 1.7e-12 1
TIGR_CMR|SO_0421 - symbol:SO_0421 "AmpD protein" species:... 152 1.2e-10 1
UNIPROTKB|P13016 - symbol:ampD "N-acetyl-anhydromuramyl-L... 150 2.1e-10 1
UNIPROTKB|Q9KPE7 - symbol:VC_2421 "AmpD protein" species:... 133 1.7e-08 1
TIGR_CMR|VC_2421 - symbol:VC_2421 "ampD protein" species:... 133 1.7e-08 1
TIGR_CMR|CPS_4811 - symbol:CPS_4811 "N-acetyl-anhydromura... 137 1.9e-08 1
>UNIPROTKB|P75820 [details] [associations]
symbol:amiD species:83333 "Escherichia coli K-12"
[GO:0008745 "N-acetylmuramoyl-L-alanine amidase activity"
evidence=IEA;IDA] [GO:0019867 "outer membrane" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0009279 "cell outer
membrane" evidence=IEA] [GO:0071555 "cell wall organization"
evidence=IEA] [GO:0009253 "peptidoglycan catabolic process"
evidence=IEA;IDA] [GO:0009392 "N-acetyl-anhydromuramoyl-L-alanine
amidase activity" evidence=IDA] InterPro:IPR002502 Pfam:PF01510
SMART:SM00644 InterPro:IPR002477 GO:GO:0005886 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0009279 PROSITE:PS51257 GO:GO:0008270
GO:GO:0008745 GO:GO:0009253 PIR:C64825 RefSeq:NP_415388.1
RefSeq:YP_489140.1 PDB:2BH7 PDB:2WKX PDB:3D2Y PDB:3D2Z PDBsum:2BH7
PDBsum:2WKX PDBsum:3D2Y PDBsum:3D2Z ProteinModelPortal:P75820
SMR:P75820 PRIDE:P75820 EnsemblBacteria:EBESCT00000000562
EnsemblBacteria:EBESCT00000017756 GeneID:12931004 GeneID:945494
KEGG:ecj:Y75_p0840 KEGG:eco:b0867 PATRIC:32116941 EchoBASE:EB3451
EcoGene:EG13687 eggNOG:COG3023 HOGENOM:HOG000255964 KO:K11066
OMA:IGAWPDE ProtClustDB:CLSK879798 BioCyc:EcoCyc:G6452-MONOMER
BioCyc:ECOL316407:JW0851-MONOMER BioCyc:MetaCyc:G6452-MONOMER
EvolutionaryTrace:P75820 Genevestigator:P75820 GO:GO:0019867
GO:GO:0009392 Gene3D:3.40.80.10 SUPFAM:SSF55846 SUPFAM:SSF47090
Uniprot:P75820
Length = 276
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 100/249 (40%), Positives = 131/249 (52%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
+K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH
Sbjct: 44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157
Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212
Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSAN-QNPERIYADITTEDMFW 267
+D LELL YGY+V T +R VI AF+ HF N E AD T+ +
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE---ADAETQAI-- 265
Query: 268 AWALVAKYG 276
A AL+ KYG
Sbjct: 266 AEALLEKYG 274
>TIGR_CMR|CBU_0379 [details] [associations]
symbol:CBU_0379 "N-acetylmuramoyl-L-alanine amidase"
species:227377 "Coxiella burnetii RSA 493" [GO:0000270
"peptidoglycan metabolic process" evidence=ISS] [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=ISS]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 InterPro:IPR002477
Pfam:PF01471 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008745
GO:GO:0009253 HOGENOM:HOG000255964 KO:K11066 Gene3D:3.40.80.10
SUPFAM:SSF55846 SUPFAM:SSF47090 Gene3D:1.10.101.10
RefSeq:NP_819418.1 HSSP:P82974 ProteinModelPortal:Q83EE5
PRIDE:Q83EE5 GeneID:1208261 KEGG:cbu:CBU_0379 PATRIC:17929451
OMA:AFKAHFS ProtClustDB:CLSK914029
BioCyc:CBUR227377:GJ7S-379-MONOMER Uniprot:Q83EE5
Length = 257
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 99/266 (37%), Positives = 142/266 (53%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
+E N N+ +++L+LHYT NF + T A + S HY+I E + G
Sbjct: 3 YEINLNYPAKNFDKRIRFLVLHYTAKNFEDSLEILTQE-AFGV-SGHYLIPESS---IDG 57
Query: 79 GK-VIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV--GEKFRSTNYYPFDEN 135
K + Q+VP+ RAWHAG+ W+ +LN SIGI +VN G GEK R ++PF +
Sbjct: 58 KKQIFQLVPEKHRAWHAGVSAWQGRIHLNDTSIGIEIVNLGYQEEGEKRR---WFPFLDY 114
Query: 136 QIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDE 195
QI + L KDI+ ++++ P V+GH+DI+P K DPGPLFPW KLY + GIGAW DE
Sbjct: 115 QIELIIELAKDIIERYQLHPTCVVGHSDISPERKADPGPLFPWKKLY-EQGIGAWYE-DE 172
Query: 196 MTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK-----RSVIRAFKTHFSAN 250
E + R+ R L R LK YGY++ T + + V+ AF+ HF
Sbjct: 173 CKKE-MERRLSNETTDIRWLQRH-----LKTYGYSIEETGELDKKTQQVVCAFQMHFRPT 226
Query: 251 QNPERIYADITTEDMFWA-WALVAKY 275
Y+ I ++ + +ALV KY
Sbjct: 227 D-----YSGIPDKETYAILYALVKKY 247
>TIGR_CMR|SPO_2967 [details] [associations]
symbol:SPO_2967 "N-acetylmuramoyl-L-alanine amidase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=ISS]
[GO:0009253 "peptidoglycan catabolic process" evidence=ISS]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0008745 GO:GO:0009253
HOGENOM:HOG000255964 Gene3D:3.40.80.10 SUPFAM:SSF55846
RefSeq:YP_168174.1 ProteinModelPortal:Q5LP82 GeneID:3194805
KEGG:sil:SPO2967 PATRIC:23379367 KO:K01447 OMA:DENTAWH
ProtClustDB:CLSK2767310 Uniprot:Q5LP82
Length = 224
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 52/116 (44%), Positives = 69/116 (59%)
Query: 69 SEKEGKYLPG--GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
+E YL G G + Q+V + RAWHAG+G+WR ++NS SIGI L N G
Sbjct: 45 AEVSAHYLIGADGTLWQMVDEADRAWHAGVGEWRGRDDINSRSIGIELDNRGD------- 97
Query: 127 TNYYPFDENQIHTL-GLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+PF Q+ TL GLL DI+ ++ I P V+GH+D+APG K DPGP F W +L
Sbjct: 98 ---HPFSAPQMTTLDGLLA-DILRRWAIPPAGVIGHSDMAPGRKCDPGPRFDWARL 149
Score = 151 (58.2 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 36/102 (35%), Positives = 53/102 (51%)
Query: 17 PEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYL 76
P W + N RDG++ ++LHYT + A + + S+HY+I
Sbjct: 3 PHWHPSPNFGPRRDGLTPSLVVLHYTAMDSAKAALERLCDPEAEV-SAHYLIGAD----- 56
Query: 77 PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG 118
G + Q+V + RAWHAG+G+WR ++NS SIGI L N G
Sbjct: 57 --GTLWQMVDEADRAWHAGVGEWRGRDDINSRSIGIELDNRG 96
>UNIPROTKB|Q48N97 [details] [associations]
symbol:ampD "N-acetyl-anhydromuramyl-L-alanine amidase
AmpD" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0008745 "N-acetylmuramoyl-L-alanine amidase activity"
evidence=ISS] [GO:0009253 "peptidoglycan catabolic process"
evidence=ISS] InterPro:IPR002502 Pfam:PF01510 SMART:SM00644
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008745 GO:GO:0009253
eggNOG:COG3023 Gene3D:3.40.80.10 SUPFAM:SSF55846
HOGENOM:HOG000255963 KO:K03806 ProtClustDB:PRK11789 OMA:LFQGCLD
RefSeq:YP_273124.1 ProteinModelPortal:Q48N97 SMR:Q48N97
STRING:Q48N97 GeneID:3559519 KEGG:psp:PSPPH_0843 PATRIC:19970759
Uniprot:Q48N97
Length = 182
Score = 172 (65.6 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 55/183 (30%), Positives = 81/183 (44%)
Query: 13 IDPFPEWEKNRNH-----YDSRDGMSVKYLILHYTVYNFAHIIT----AFTSNRAHNLHS 63
+DP W H +++R + L++H A T AF N+ +
Sbjct: 3 LDPASGWCDGVQHCPSPNFNARPEGEISLLVIHNISLPPAQFKTGKVQAFFQNQLDSTEH 62
Query: 64 SHYV-ISEKE--GKYL--PGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGG 118
++V I++ +L G+VIQ V RAWHAG+ ++ N S+GI L
Sbjct: 63 PYFVGIADLRVSAHFLIERDGEVIQFVSCLDRAWHAGVSSFQGREGCNDFSVGIEL---- 118
Query: 119 VVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFP 177
T+ PF E Q L L + + F I P+ + GH+DIAPG K DPGP F
Sbjct: 119 ------EGTDEQPFTEAQYDALIELTRQLRQAFVAITPERICGHSDIAPGRKTDPGPFFD 172
Query: 178 WGK 180
W +
Sbjct: 173 WAR 175
>UNIPROTKB|Q602L1 [details] [associations]
symbol:ampD "N-acetyl-anhydromuramyl-L-alanine amidase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=ISS]
[GO:0009253 "peptidoglycan catabolic process" evidence=ISS]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 GO:GO:0008745
GO:GO:0009253 Gene3D:3.40.80.10 SUPFAM:SSF55846
HOGENOM:HOG000255963 KO:K03806 ProtClustDB:PRK11789 EMBL:AE017282
GenomeReviews:AE017282_GR OMA:LFQGCLD RefSeq:YP_115439.1
ProteinModelPortal:Q602L1 SMR:Q602L1 GeneID:3104162
KEGG:mca:MCA3052 PATRIC:22609996 Uniprot:Q602L1
Length = 215
Score = 168 (64.2 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 44/138 (31%), Positives = 63/138 (45%)
Query: 48 HIITAFTSNRAHNLHSS--HYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNL 105
H+ T H S H +S GG+V VP + RAWHAG+ ++R
Sbjct: 50 HLFTNTLDGTVHPFFESIRHLRVSA-HALIRRGGEVEHYVPPDRRAWHAGVSEFRGRSAC 108
Query: 106 NSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFK-IKPQYVLGHTDI 164
N SIGI L T+ P+ Q +L L ++++++ I ++GH+ I
Sbjct: 109 NDFSIGIEL----------EGTDDLPYRREQYRSLAALVAELMARYPAITEDRIVGHSTI 158
Query: 165 APGSKMDPGPLFPWGKLY 182
AP K DPGP F WG Y
Sbjct: 159 APQRKTDPGPAFDWGCFY 176
>TIGR_CMR|SO_0421 [details] [associations]
symbol:SO_0421 "AmpD protein" species:211586 "Shewanella
oneidensis MR-1" [GO:0000270 "peptidoglycan metabolic process"
evidence=ISS] [GO:0008745 "N-acetylmuramoyl-L-alanine amidase
activity" evidence=ISS] InterPro:IPR002502 Pfam:PF01510
SMART:SM00644 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008745
GO:GO:0009253 Gene3D:3.40.80.10 SUPFAM:SSF55846
HOGENOM:HOG000255963 KO:K03806 ProtClustDB:PRK11789 OMA:LFQGCLD
HSSP:P82974 RefSeq:NP_716058.1 ProteinModelPortal:Q8EJP2 SMR:Q8EJP2
GeneID:1168299 KEGG:son:SO_0421 PATRIC:23520543 Uniprot:Q8EJP2
Length = 181
Score = 152 (58.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+ +Q V + RAWHAG+ ++ N N SIGI L T+ P+ Q
Sbjct: 81 GECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIEL----------EGTDTEPYTAAQYQ 130
Query: 139 TLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYL 183
L L + +++Q+ + + ++GH DIAP K DPGP F W + YL
Sbjct: 131 QLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWER-YL 175
>UNIPROTKB|P13016 [details] [associations]
symbol:ampD "N-acetyl-anhydromuramyl-L-alanine-amidase"
species:83333 "Escherichia coli K-12" [GO:0009253 "peptidoglycan
catabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071555 "cell wall organization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=IEA;IDA]
[GO:0009254 "peptidoglycan turnover" evidence=IMP]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0009254 GO:GO:0008745
GO:GO:0009253 eggNOG:COG3023 Gene3D:3.40.80.10 SUPFAM:SSF55846
EMBL:X15237 EMBL:L28105 PIR:S05569 RefSeq:NP_414652.1
RefSeq:YP_488413.1 ProteinModelPortal:P13016 SMR:P13016
PRIDE:P13016 EnsemblBacteria:EBESCT00000004951
EnsemblBacteria:EBESCT00000014606 GeneID:12932901 GeneID:948877
KEGG:ecj:Y75_p0107 KEGG:eco:b0110 PATRIC:32115321 EchoBASE:EB0039
EcoGene:EG10041 HOGENOM:HOG000255963 KO:K03806 OMA:CNDDSIG
ProtClustDB:PRK11789 BioCyc:EcoCyc:EG10041-MONOMER
BioCyc:ECOL316407:JW0106-MONOMER BioCyc:MetaCyc:EG10041-MONOMER
Genevestigator:P13016 Uniprot:P13016
Length = 183
Score = 150 (57.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 32/102 (31%), Positives = 51/102 (50%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+++Q VP + RAWHAG+ +++ N SIGI L T+ + + Q
Sbjct: 82 GEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIEL----------EGTDTLAYTDAQYQ 131
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
L + + ++ + + + GH DIAP K DPGP F W +
Sbjct: 132 QLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWAR 173
>UNIPROTKB|Q9KPE7 [details] [associations]
symbol:VC_2421 "AmpD protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000270 "peptidoglycan
metabolic process" evidence=ISS] [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=ISS]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008745 GO:GO:0009253
Gene3D:3.40.80.10 SUPFAM:SSF55846 KO:K03806 ProtClustDB:PRK11789
GO:GO:0000270 OMA:LFQGCLD HSSP:P82974 PIR:E82077 RefSeq:NP_232051.1
ProteinModelPortal:Q9KPE7 SMR:Q9KPE7 DNASU:2613090 GeneID:2613090
KEGG:vch:VC2421 PATRIC:20083859 Uniprot:Q9KPE7
Length = 181
Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/101 (32%), Positives = 51/101 (50%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+V+Q VP ++RAWHAG+ + N SIGI L +++ P+ + Q
Sbjct: 82 GEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL----------EGSDFVPYTDAQYQ 131
Query: 139 TLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPW 178
L L + ++ ++ I + GH IAP K DPG +F W
Sbjct: 132 ALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDW 172
>TIGR_CMR|VC_2421 [details] [associations]
symbol:VC_2421 "ampD protein" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0000270 "peptidoglycan metabolic process"
evidence=ISS] [GO:0008745 "N-acetylmuramoyl-L-alanine amidase
activity" evidence=ISS] InterPro:IPR002502 Pfam:PF01510
SMART:SM00644 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008745
GO:GO:0009253 Gene3D:3.40.80.10 SUPFAM:SSF55846 KO:K03806
ProtClustDB:PRK11789 GO:GO:0000270 OMA:LFQGCLD HSSP:P82974
PIR:E82077 RefSeq:NP_232051.1 ProteinModelPortal:Q9KPE7 SMR:Q9KPE7
DNASU:2613090 GeneID:2613090 KEGG:vch:VC2421 PATRIC:20083859
Uniprot:Q9KPE7
Length = 181
Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/101 (32%), Positives = 51/101 (50%)
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
G+V+Q VP ++RAWHAG+ + N SIGI L +++ P+ + Q
Sbjct: 82 GEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL----------EGSDFVPYTDAQYQ 131
Query: 139 TLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPW 178
L L + ++ ++ I + GH IAP K DPG +F W
Sbjct: 132 ALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDW 172
>TIGR_CMR|CPS_4811 [details] [associations]
symbol:CPS_4811 "N-acetyl-anhydromuramyl-L-alanine
amidase" species:167879 "Colwellia psychrerythraea 34H" [GO:0008745
"N-acetylmuramoyl-L-alanine amidase activity" evidence=ISS]
[GO:0009253 "peptidoglycan catabolic process" evidence=ISS]
InterPro:IPR002502 Pfam:PF01510 SMART:SM00644 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008745 GO:GO:0009253
eggNOG:COG3023 Gene3D:3.40.80.10 SUPFAM:SSF55846
HOGENOM:HOG000255963 KO:K03806 ProtClustDB:PRK11789
RefSeq:YP_271450.1 ProteinModelPortal:Q47US2 SMR:Q47US2
STRING:Q47US2 GeneID:3520945 KEGG:cps:CPS_4811 PATRIC:21472437
OMA:LFQGCLD BioCyc:CPSY167879:GI48-4812-MONOMER Uniprot:Q47US2
Length = 189
Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 42/102 (41%), Positives = 53/102 (51%)
Query: 79 GKVIQIVPDNMRAWHAGIGKW-RRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQI 137
G VIQ V +AWHAG+ + +RDR N SIGI L G + + Y Q+
Sbjct: 83 GHVIQYVAFTDKAWHAGVSSFNKRDR-CNDYSIGIELE--GTDDISYTAEQY-----QQL 134
Query: 138 HTLGLLGKDIVSQFK-IKPQYVLGHTDIAPGSKMDPGPLFPW 178
+L L +D QF I V+GH DIAP K DPGP+F W
Sbjct: 135 ISLTLCLQD---QFPAIIMDNVVGHCDIAPVRKTDPGPVFDW 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 278 278 0.00081 115 3 11 22 0.49 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 596 (63 KB)
Total size of DFA: 227 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.74u 0.11s 23.85t Elapsed: 00:00:04
Total cpu time: 23.74u 0.11s 23.85t Elapsed: 00:00:04
Start: Thu Aug 15 12:51:56 2013 End: Thu Aug 15 12:52:00 2013