RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13666
(278 letters)
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP,
peptidoglycan recognizing protein, AMPD,
acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A
{Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Length = 261
Score = 221 bits (565), Expect = 3e-72
Identities = 98/278 (35%), Positives = 129/278 (46%), Gaps = 28/278 (10%)
Query: 3 SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
I GY +D +K L++HYT +F + T +
Sbjct: 6 KGIVEKEGYQLD--------TRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQV---- 53
Query: 63 SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
SSHY++ +Y ++ Q+VP+ AWHAGI WR LN SIGI L N G +
Sbjct: 54 SSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRG-WQK 112
Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
+ PF+ QI L L KDI++++ IKP+ V+ H DIAP K DPGPLFPW +L
Sbjct: 113 SAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLA 172
Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT----NKRS 238
GIGAW PD V + P P +D LELL YGY+V +R
Sbjct: 173 -QQGIGAW--PDAQRVNFYLAGRAPHTP----VDTASLLELLARYGYDVKPDMTPREQRR 225
Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYG 276
VI AF+ HF P + E A AL+ KYG
Sbjct: 226 VIMAFQMHF----RPTLYNGEADAETQAIAEALLEKYG 259
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter
freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A
2y2d_A 2y2e_A
Length = 187
Score = 166 bits (423), Expect = 1e-51
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 25 HYDSR-DGMSVKYLILHYT-----VYNFAHIITAFTSNRAHNLH-----------SSHYV 67
HYD R D + L++H + I FT N H S+H +
Sbjct: 18 HYDCRPDDENPSLLVVHNISLPPGEFGGPWIDALFTGTIDPNAHPYFAGIAHLRVSAHCL 77
Query: 68 ISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRST 127
I G+++Q VP + RAWHAG+ ++ N SIGI L T
Sbjct: 78 IRRD-------GEIVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIELEG----------T 120
Query: 128 NYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGI 187
+ + + Q L + +++++ + GH +IAP K DPGP F W +
Sbjct: 121 DTLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGPSFDWARFR-ALVT 179
Query: 188 GAWLSPDEMT 197
+ EMT
Sbjct: 180 PSS--HKEMT 187
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL
biogenesis/degradation, compet hydrolase, secreted,
sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A
3hmb_A
Length = 157
Score = 94.4 bits (235), Expect = 3e-24
Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 31/163 (19%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH----SSHYVISEKEGKYLPGG 79
+ M+ Y+ +H T N A A R S H+ + + E
Sbjct: 16 ANNRPGYAMTPLYITVHNT-ANTAVGADAAAHARYLKNPDTTTSWHFTVDDTE------- 67
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
+ Q +P N WHAG G + N SIGI + F + +
Sbjct: 68 -IYQHLPLNENGWHAGDGNG----SGNRASIGIEICENA----------DGDFAKATANA 112
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFP-WGKL 181
L+ K ++++ I V+ H + K P L W
Sbjct: 113 QWLI-KTLMAEHNISLANVVPHKYWS--GKECPRKLLDTWDSF 152
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2;
PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus
anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Length = 159
Score = 86.4 bits (214), Expect = 4e-21
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 21 KNRNHYDSRDGMSVKYLILHYT--VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
++ M KY+ +H T + + +N S H + +K+
Sbjct: 10 PSKYGTKCPYTMKPKYITVHNTYNDAPAENEVNYMITNNNEV--SFHVAVDDKQ------ 61
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
IQ +P AW G G N SI + + S + +
Sbjct: 62 --AIQGIPWERNAWACGDGNG----PGNRESISVEICY---------SKSGGDRYYKAEN 106
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
+ + ++S + I + V H + K P + G+
Sbjct: 107 NAVDVVRQLMSMYNIPIENVRTHQSWS--GKYCPHRMLAEGR 146
>3lat_A Bifunctional autolysin; amidase, ATLE, peptidoglycan hydrolase,
cell WALL biogenesis/degradation, multifunctional
enzyme, secreted; 1.70A {Staphylococcus epidermidis}
Length = 213
Score = 45.9 bits (108), Expect = 4e-06
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 44/185 (23%)
Query: 15 PFPEWEKNRNHY-----DSRDGMSVKYLILHYT-VYNFAHIITAFTSNRAHNLHSSHYVI 68
P E++ Y + +++H T N R + H +
Sbjct: 30 KAPRIEEDYTSYFPKYGYRNGVGRPEGIVVHDTANDNSTIDGEIAFMKRNYTNAFVHAFV 89
Query: 69 SEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
G ++I+ P + +W AG N I + +V + +
Sbjct: 90 D--------GNRIIETAPTDYLSWGAG-------PYGNQRFINVEIV---------HTHD 125
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQY--------VLGHTDIA----PGSKMDPGPLF 176
Y F ++ + + +KP V H I+ DP
Sbjct: 126 YDSFAR-SMNNYADYAATQLQYYNLKPDSAENDGRGTVWTHAAISNFLGGTDHADPHQYL 184
Query: 177 P-WGK 180
Sbjct: 185 RSHNY 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 6e-05
Identities = 34/274 (12%), Positives = 69/274 (25%), Gaps = 79/274 (28%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE-KEGKYLP 77
+ M+ Y+ +YN + + +R + E + K
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-- 152
Query: 78 GGKVIQIVPDNMRAWHAGIGKW-------RRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY 130
++ D + G GK + M I +N +
Sbjct: 153 ------VLIDGV----LGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNS----- 194
Query: 131 PFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPL-FPWGKLYLDYGIGA 189
E + L L ++I P + + L + L
Sbjct: 195 --PETVLEMLQKL------LYQIDPNWT------SRSDHSSNIKLRIHSIQAEL------ 234
Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFL------ELLKAYGYNVTI---TNKRSVI 240
R+ ++PY L + L + A+ + I T + V
Sbjct: 235 -------------RRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 241 RAFK----THFSANQNPERIYADITTEDMFWAWA 270
TH S + + + D + + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYL 311
Score = 42.9 bits (100), Expect = 9e-05
Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 89/266 (33%)
Query: 29 RDGMSV-KYLILHYTVYNFAHIITAFTSNRAHNLHSSHY---VISEKEGKYLPGGKVIQI 84
RDG++ H II + + + + + +P ++ +
Sbjct: 338 RDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPT-ILLSL 394
Query: 85 VPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL-- 142
+ W + M + L +V ++ + + I ++ L
Sbjct: 395 I-------------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYLEL 435
Query: 143 ---------LGKDIVSQFKI----------KP---QYV---LGH--TDIAPGSKMDPGPL 175
L + IV + I P QY +GH +I +M L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT---L 492
Query: 176 FPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN 235
F ++LD+ +L E +R A G L L
Sbjct: 493 FR--MVFLDFR---FL-------EQKIRHDSTAWNAS-----GSILNTL----------- 524
Query: 236 KRSVIRAFKTHFSANQN-PERIYADI 260
++ +K + N ER+ I
Sbjct: 525 --QQLKFYKPYICDNDPKYERLVNAI 548
Score = 39.1 bits (90), Expect = 0.001
Identities = 35/279 (12%), Positives = 70/279 (25%), Gaps = 90/279 (32%)
Query: 5 IHGMPGY--------------VIDPFPE---WEKNRNHYDSRDGMSVKYLILHYTVYNFA 47
I G+ G V W +N +S + + L Y +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNW 213
Query: 48 HIITAFTSNRAHNLHS-----SHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWR-- 100
+ +SN +HS + S+ L +V N+ +A W
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------LVLLNV--QNAKA--WNAF 262
Query: 101 ----------RDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDI-VS 149
R + + ++ + ++ LL K +
Sbjct: 263 NLSCKILLTTRFKQV------TDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCR 314
Query: 150 QFKIKPQYVLGHTDIAP------GSKMDPGPLFPWGKLYLDYGIGAWLSPD----EMTVE 199
+ + + + P + G W D W + +E
Sbjct: 315 PQDLPREVLTTN----PRRLSIIAESIRDGLA-TW-----DN----WKHVNCDKLTTIIE 360
Query: 200 AIVRKFKPA--RPYPRKLDRGIFLELLKAYGYNVTITNK 236
+ + +PA R +L +F + I
Sbjct: 361 SSLNVLEPAEYRKMFDRL--SVFPP-------SAHIPTI 390
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Length = 167
Score = 39.9 bits (93), Expect = 2e-04
Identities = 23/152 (15%), Positives = 38/152 (25%), Gaps = 34/152 (22%)
Query: 34 VKYLILHYT-----------VYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
V +I T V + T + + +++I G V
Sbjct: 24 VGLVIALPTNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNFLIG-------GDGNVY 76
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
N H + N +S S+ + G Q+ L
Sbjct: 77 VGRGWNKMGAHMN------NINYDSQSLSFAYI-GSFKTI--------QPSAKQLSVTRL 121
Query: 143 LGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPG 173
L + V KI P Y + + P
Sbjct: 122 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKA 153
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 34.5 bits (79), Expect = 0.020
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 37/146 (25%)
Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSH------------YVISEKEGKYLPGGKV 81
Y+I+H++ T ++ H + I G +
Sbjct: 36 APYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIG-------GDGMI 88
Query: 82 IQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLG 141
N+ HA N S+GI L+ + +
Sbjct: 89 YTGRGFNVIGAHAP--------KYNDKSVGIVLIGDW---------RTELPPKQMLDAAK 131
Query: 142 LLGKDIVSQFKIKPQY-VLGHTDIAP 166
L V + I P Y +LGH +
Sbjct: 132 NLIAFGVFKGYIDPAYKLLGHRQVRD 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.81
Identities = 42/251 (16%), Positives = 72/251 (28%), Gaps = 90/251 (35%)
Query: 30 DGMSVKYLILHY-----------TVY--------NFAHIITAFTSNRAHNLHSSHYVISE 70
D S + L L + + F I+ T A + + +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT----TP 57
Query: 71 KE--GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
E GK+L G V +V + G + D+ LN + E F +
Sbjct: 58 AELVGKFL--GYVSSLVEPS----KVG----QFDQVLNL-----------CLTE-FENC- 94
Query: 129 YYPF-DENQIHTL--GLLGKDIVSQFK----IKPQYVLGHTDIAPGSKMDPGPLF----- 176
+ + N IH L LL ++ + K IK P K LF
Sbjct: 95 ---YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 177 PWGKLYLDYG----IGAWLSPDEM-----TVEAIVRKF----------------KPARPY 211
+L +G + +E+ T +V + +
Sbjct: 152 GNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 212 PRKLDRGIFLE 222
+ L+ +LE
Sbjct: 210 TQGLNILEWLE 220
Score = 27.7 bits (61), Expect = 4.8
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 58/165 (35%)
Query: 64 SHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK 123
+HYV++ K + PG L S G + G+V
Sbjct: 247 AHYVVTAKLLGFTPG-------------------------ELRSYLKGATGHSQGLVTAV 281
Query: 124 F--RSTNYYPFDENQIHTLGLLGKDIVSQFKI--KPQYVLGHTDIAPGSKMDPGPLFPWG 179
+ ++ F + + +L F I + +T + P D
Sbjct: 282 AIAETDSWESFFVSVRKAITVL-------FFIGVRCYEAYPNTSLPPSILED-------- 326
Query: 180 KLYLDYGIGAWLSPDEM---------TVEAIVRKFKPARPYPRKL 215
L+ G P M V+ V K P +++
Sbjct: 327 --SLENNEGV---PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 29.5 bits (67), Expect = 1.1
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 29/110 (26%)
Query: 194 DEMTVEAIVR--------KFKPARPYP--RKLDRGIFLELLKAYGY-NVTITNKR----- 237
+ + VE KF+P RPY + DR +++ + + + I N R
Sbjct: 239 ERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYP 298
Query: 238 ---------SVIRAFKTHF--SANQNPERIYADITTEDMFWAWALVAKYG 276
+ + K F +ANQN I A + + + + G
Sbjct: 299 ARPLKTGLLEIAKIHKGDFRITANQNL--IIAGVPESEKAKIEKIAKESG 346
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.6
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 8/23 (34%)
Query: 10 GYV-----IDPFPEWEKNRNHYD 27
G V +D EW R +
Sbjct: 49 GLVLSDKLVDTRSEW---RTFSN 68
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo
protein; 2.20A {Homo sapiens}
Length = 143
Score = 28.0 bits (62), Expect = 2.0
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 61 LHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVV 120
+H H+ + G Y GG+ ++I PD G RDR+ + I G V
Sbjct: 1 MHHHHHHFNLPPGNYKKGGQYLRINPD-------GTVDGTRDRSDTHIQFQISPEGNGEV 53
Query: 121 GEKFRSTNYY 130
K T Y
Sbjct: 54 LLKSTETGQY 63
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A
{Escherichia coli}
Length = 869
Score = 28.6 bits (63), Expect = 2.4
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 60 NLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV 119
+ ++Y + LP G+++ + WH+G + R + L +S GI N G+
Sbjct: 305 RMIVNNYAPLHLKEVMLPTGELLTDMDPGNGGWHSGTMRQRIGKEL--VSHGIDNANYGL 362
Query: 120 VGEKFRSTNYYPFDENQIHTLGLLGK 145
N +P+ Q+ G
Sbjct: 363 NSTAGLGENSHPYVVAQLAAHNSRGN 388
>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune
system, thermophIle, model system; 2.10A {Alvinella
pompejana}
Length = 176
Score = 27.6 bits (61), Expect = 3.4
Identities = 14/177 (7%), Positives = 38/177 (21%), Gaps = 50/177 (28%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTV------------------------YNFAHIITAF 53
+W + + L T +
Sbjct: 10 QWAAIEPRRQIKMNGRADEIFLWQTGPDTCSLMGLTADKCQGCLQDSSCTEQIVKALQDA 69
Query: 54 TSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIH 113
++ +++I G + + + H + +S SIG+
Sbjct: 70 DFKEGNDDIKYNFLID-------QDGVIYEGRGWGVVGQHT--------KGRDSHSIGVA 114
Query: 114 LVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSK 169
++ G + + L L + ++ + + G
Sbjct: 115 VI-GDFGKK--------EPSQALQDALSKLIICGQAAEELSSGARLRTTPAM-SGQA 161
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate
immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila
melanogaster}
Length = 150
Score = 27.6 bits (61), Expect = 3.5
Identities = 5/62 (8%), Positives = 15/62 (24%), Gaps = 16/62 (25%)
Query: 106 NSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDI 164
++ + + + P L K + I Y ++ +
Sbjct: 97 DADELVVAFIG--------------PSSS-NKKIALELIKQGIKLGHISKNYSLIDDLEK 141
Query: 165 AP 166
+
Sbjct: 142 SG 143
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 7.7
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 86 PDNMRAWHAGIGKWRRDRN 104
D + I KWR ++
Sbjct: 77 ADRLTQEPESIRKWREEQR 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.442
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,632,601
Number of extensions: 280249
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 23
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)