RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13666
(278 letters)
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine
amidase YbjR, N-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 173
Score = 122 bits (306), Expect = 5e-35
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 19 WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
++ + +K L++HYT +F + T + SSHY++ +Y
Sbjct: 8 YQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGK 63
Query: 79 GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
++ Q+VP+ AWHAGI WR LN SIGI L N + + PF+ QI
Sbjct: 64 PRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENR-GWQKSAGVKYFAPFEPAQIQ 122
Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
L L KDI++++ IKP+ V+ H DIAP K DPGPLFPW +L GIGAW
Sbjct: 123 ALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLA-QQGIGAW 173
>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId:
546]}
Length = 187
Score = 90.9 bits (225), Expect = 6e-23
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 19/173 (10%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTV-----YNFAHIITAFTSNRAHNLHSSHYVISEKE 72
+ ++ D + L++H + I FT N H I+
Sbjct: 12 RRVPSPHYDCRPDDENPSLLVVHNISLPPGEFGGPWIDALFTGTIDPNAHPYFAGIAHLR 71
Query: 73 GKY----LPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTN 128
G+++Q VP + RAWHAG+ ++ N SIGI L T+
Sbjct: 72 VSAHCLIRRDGEIVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIELEG----------TD 121
Query: 129 YYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKL 181
+ + Q L + +++++ + GH +IAP K DPGP F W +
Sbjct: 122 TLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGPSFDWARF 174
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein,
PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 62.9 bits (152), Expect = 8e-13
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 37/171 (21%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAH-----------IITAFTSNRAHNLHSSHY 66
EW+ + + ++Y+++ +T + + + ++
Sbjct: 9 EWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNF 68
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
+I E G V + N H+G N MSIGI +
Sbjct: 69 LIGED-------GLVYEGRGWNFTGAHSGHLW-------NPMSIGISFMGNY-------- 106
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
I L V+Q ++ Y + GH D+ + PG
Sbjct: 107 -MDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQR--TLSPGNQL 154
>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG
{Bacillus anthracis [TaxId: 1392]}
Length = 157
Score = 58.3 bits (140), Expect = 3e-11
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 25/161 (15%)
Query: 22 NRNHYDSRDG--MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGG 79
+ Y ++ M KY+ +H T + +N S H + +K+
Sbjct: 9 VPSKYGTKCPYTMKPKYITVHNTYNDAPAENEVNYMITNNNEVSFHVAVDDKQ------- 61
Query: 80 KVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHT 139
IQ +P AW G G +R SI + + S + +
Sbjct: 62 -AIQGIPWERNAWACGDGNGPGNRE----SISVEICY---------SKSGGDRYYKAENN 107
Query: 140 LGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGK 180
+ + ++S + I + V H + K P + G+
Sbjct: 108 AVDVVRQLMSMYNIPIENVRTHQSWS--GKYCPHRMLAEGR 146
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine
amidase YbjR, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 55.6 bits (134), Expect = 5e-11
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 193 PDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNK----RSVIRAFKTHFS 248
PD V + P P +D LELL YGY+V R VI AF+ HF
Sbjct: 1 PDAQRVNFYLAGRAPHTP----VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF- 55
Query: 249 ANQNPERIYADITTEDMFWAWALVAKYG 276
P + E A AL+ KYG
Sbjct: 56 ---RPTLYNGEADAETQAIAEALLEKYG 80
>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 166
Score = 57.5 bits (138), Expect = 6e-11
Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 34/155 (21%)
Query: 34 VKYLILHYTVYNFA-----------HIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVI 82
V +I T + T + + +++I G V
Sbjct: 23 VGLVIALPTNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNFLIG-------GDGNVY 75
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
N H + +S S+ + Q+ L
Sbjct: 76 VGRGWNKMGAHMNNINY------DSQSLSFAYIGSF---------KTIQPSAKQLSVTRL 120
Query: 143 LGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
L + V KI P Y + + P
Sbjct: 121 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADAL 155
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb
(Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 174
Score = 54.0 bits (129), Expect = 1e-09
Identities = 24/172 (13%), Positives = 43/172 (25%), Gaps = 39/172 (22%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYT------------VYNFAHIITAFTSNRAHNLHSSH 65
+W Y+I+H++ + + + R N
Sbjct: 9 DWGARLPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYS 68
Query: 66 YVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFR 125
+ I G + N+ HA + +GI L+
Sbjct: 69 FGIGGD-------GMIYTGRGFNVIGAHAPKYNDKS--------VGIVLIGDW------- 106
Query: 126 STNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
+ + L V + I P Y +LGH + PG
Sbjct: 107 --RTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRD--TECPGGRL 154
>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 52.1 bits (124), Expect = 5e-09
Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 39/171 (22%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYTVYNFAH-----------IITAFTSNRAHNLHSSHY 66
WE H + + KY+I+ +T I + R H+
Sbjct: 8 AWEARETHC-PKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHF 66
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
++ + G V + WH N +++GI +
Sbjct: 67 LVGQ-------DGGVYE-----GVGWHIQGSHTY---GFNDIALGIAFIGYF-------- 103
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
P + + L + V + + P Y ++GH+D+ + PG
Sbjct: 104 -VEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVN--ILSPGQAL 151
>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA
(Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 173
Score = 52.1 bits (124), Expect = 6e-09
Identities = 19/171 (11%), Positives = 45/171 (26%), Gaps = 38/171 (22%)
Query: 18 EWEKNRNHYDSRDGMSVKYLILHYT-----------VYNFAHIITAFTSNRAHNLHSSHY 66
+W + ++Y+++H+T ++ + N S ++
Sbjct: 9 QWGGKPSLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDISYNF 68
Query: 67 VISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRS 126
+I G V + W N++ GI +
Sbjct: 69 LIGND-------GIVYE-----GTGWGLRGAHT---YGYNAIGTGIAFIGNF-------- 105
Query: 127 TNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
+ + L V Q ++ Y ++ + + PG
Sbjct: 106 -VDKLPSDAALQAAKDLLACGVQQGELSEDYALIAGSQVIS--TQSPGLTL 153
>d2cb3a1 d.118.1.1 (A:174-344) Peptidoglycan-recognition protein-LE
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 171
Score = 50.5 bits (120), Expect = 2e-08
Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 38/165 (23%)
Query: 24 NHYDSRDGMSVKYLILHYTVYNFAH-----------IITAFTSNRAHNLHSSHYVISEKE 72
+ VKY+++ +T + + + +R N + ++++
Sbjct: 16 MDEPLPLQLPVKYVVILHTATESSEKRAINVRLIRDMQSFHIESRGWNDIAYNFLVGCD- 74
Query: 73 GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPF 132
G + + H N +S+GI +
Sbjct: 75 ------GNIYEGRGWKTVGAHT--------LGYNRISLGISFIGCF---------MKELP 111
Query: 133 DENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
+ ++ L V I Y ++ H PG
Sbjct: 112 TADALNMCRNLLARGVEDGHISTDYRLICHCQCNS--TESPGRRL 154
>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 165
Score = 49.8 bits (118), Expect = 3e-08
Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 39/178 (21%)
Query: 12 VIDPFPEWE-KNRNHYDSRDGMSVKYLILHYTVYNFAH-----------IITAFTSNRAH 59
VI EW + + + +++ +T + + +
Sbjct: 1 VILKVAEWGGRPAKRMLDAQQLPINRVVISHTAAEGCESREVCSARVNVVQSFHMDSWGW 60
Query: 60 NLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV 119
+ ++++ Y R W + N SIGI +
Sbjct: 61 DHIGYNFLVGGDGRVY------------EGRGWDYVGAHT---KGYNRGSIGISFIG--- 102
Query: 120 VGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQY-VLGHTDIAPGSKMDPGPLF 176
+ +E Q+ LL ++ V K+ Y + GH ++ PG
Sbjct: 103 ------TFTTRKPNERQLEACQLLLQEGVRLKKLTTNYRLYGHRQLSA--TESPGEEL 152
>d1lbaa_ d.118.1.1 (A:) Bacteriophage T7 lysozyme (Zn amidase)
{Bacteriophage T7 [TaxId: 10760]}
Length = 146
Score = 42.8 bits (100), Expect = 7e-06
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 30/160 (18%)
Query: 28 SRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH-----SSHYVISEKEGKYLPGGKVI 82
++ S + +H + + + + H H++I V
Sbjct: 1 AKQRESTDAIFVHCSATKPSQNVGVREIRQWHKEQGWLDVGYHFIIKRDG-------TVE 53
Query: 83 QIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGL 142
+ HA N NS+ + + + F Q+ +L
Sbjct: 54 AGRDEMAVGSHAK------GYNHNSIGVCLVGGI------DDKGKFDANFTPAQMQSLRS 101
Query: 143 LGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
L ++++++ + H ++AP K P F + +
Sbjct: 102 LLVTLLAKYEGAV--LRAHHEVAP--KACPS--FDLKRWW 135
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 3/129 (2%)
Query: 1 MPSSIHGMPGYVIDPFPEWEKNRNHYDSR-DGMSVKYLILHYTVYNFAHIITAFTSNRAH 59
S+ G EW+ D ++ Y + + + +
Sbjct: 73 RESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKN 132
Query: 60 NLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGV 119
++ K + I + + G+ R ++L + G+ + NGGV
Sbjct: 133 VVNVRESADPASAVKERLETEHILLASGSWPHMP--NGRSPRTKDLQLQNAGVMIKNGGV 190
Query: 120 VGEKFRSTN 128
+++ TN
Sbjct: 191 QVDEYSRTN 199
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.442
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,149,717
Number of extensions: 55009
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 16
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)