BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13667
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
Length = 117
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 37 LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96
++ +L E K L+ ++ L D + ++ +G ++ + T ++ + L + L +N+LN
Sbjct: 32 VQADLNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRLNALNR 91
Query: 97 QLTKKGIEINEYKDKFDIQL 116
Q K ++ E K L
Sbjct: 92 QEQKINEKVKELTQKIQAAL 111
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 32 TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPT---LTTNRDQLN 88
KL ++ ++ E + LDTLKDL D + V + E P+ L +N
Sbjct: 146 AKLHDINAQMVEDQGFLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSIN 205
Query: 89 TLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENES 132
L+ +LN E E+ F + GN PK + E+
Sbjct: 206 KLLTALN--------ECTEWAQIFILDCLGNYM----PKDDREA 237
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 31 ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPT---LTTNRDQL 87
KL ++ ++ E + LD+L+DL D + V + E P L N +
Sbjct: 145 VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204
Query: 88 NTLINSLNE 96
N L+ +LNE
Sbjct: 205 NKLLTALNE 213
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 31 ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPT---LTTNRDQL 87
KL ++ ++ E + LD+L+DL D + V + E P L N +
Sbjct: 145 VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204
Query: 88 NTLINSLNE 96
N L+ +LNE
Sbjct: 205 NKLLTALNE 213
>pdb|3FBZ|A Chain A, Crystal Structure Of Orf140 Of The Archaeal Virus
Acidianus Filamentous Virus 1 (Afv1)
pdb|3FBZ|B Chain B, Crystal Structure Of Orf140 Of The Archaeal Virus
Acidianus Filamentous Virus 1 (Afv1)
pdb|3FBZ|C Chain C, Crystal Structure Of Orf140 Of The Archaeal Virus
Acidianus Filamentous Virus 1 (Afv1)
pdb|3FBZ|D Chain D, Crystal Structure Of Orf140 Of The Archaeal Virus
Acidianus Filamentous Virus 1 (Afv1)
Length = 140
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 60 CFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL-NEQL---------TKKGIEINEYK 109
+R +GG++ E V ++T + Q N + + NE L T+ I +
Sbjct: 22 LWRNLGGLIPEDXAISVTESITADWKQYNDXXSKVRNETLDILKTNKVATEDYIGYIAFA 81
Query: 110 DKFDIQLQGNKTSAPPPKQENESA 133
++ Q+ NK S+P P NE++
Sbjct: 82 EELAHQVWKNKNSSPDPNTANEAS 105
>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
Length = 291
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 59 RCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104
+C L G + E+ K+++ LN L+N++ +Q ++G+E
Sbjct: 98 KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLE 143
>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|B Chain B, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|C Chain C, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|D Chain D, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|E Chain E, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|F Chain F, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|G Chain G, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|H Chain H, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
Length = 291
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 59 RCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104
+C L G + E+ K+++ LN L+N++ +Q ++G+E
Sbjct: 98 KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLE 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,781,027
Number of Sequences: 62578
Number of extensions: 137303
Number of successful extensions: 337
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 34
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)