BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13667
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1
Length = 154
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 96/135 (71%), Gaps = 4/135 (2%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
++ E+V GF LR EQR +A+K +ELE EL EH +V+DTLK++D R+C+R++GGVL E
Sbjct: 21 VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80
Query: 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
+TVKEV+P L N++Q+ +I +L +QL KG E+NE+++K +I+L G + P K+ +
Sbjct: 81 RTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139
Query: 131 ESA---PRSAGVVVN 142
E A SAGV+V+
Sbjct: 140 EGAGAKASSAGVLVS 154
>sp|B0BN18|PFD2_RAT Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1
Length = 154
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 97/135 (71%), Gaps = 4/135 (2%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
++ E+V GF LR EQR +A+K +ELE EL EH +V+DTLK++D R+C+R++GGVL E
Sbjct: 21 VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80
Query: 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
+TVKEV+P L N++Q+ +I +L++QL KG E+NE+++K +I+L G + P K+ +
Sbjct: 81 RTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139
Query: 131 ESA---PRSAGVVVN 142
E A SAGV+V+
Sbjct: 140 EGAGAKSSSAGVLVS 154
>sp|A1A4P5|PFD2_BOVIN Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1
Length = 154
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 96/135 (71%), Gaps = 4/135 (2%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
++ E+V GF LR EQR +A+K +ELE EL EH +V+DTLK++D R+C+R++GGVL E
Sbjct: 21 VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80
Query: 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
+TVKEV+P L N++Q+ +I +L +QL KG E+NE+++K +I+L G + P K+ +
Sbjct: 81 RTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139
Query: 131 ESA---PRSAGVVVN 142
E A SAGV+V+
Sbjct: 140 EGAGAKASSAGVLVS 154
>sp|O70591|PFD2_MOUSE Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2
Length = 154
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 96/134 (71%), Gaps = 4/134 (2%)
Query: 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEK 71
+ E+V GF LR EQR +A+K +ELE EL EH +V+DTLK++D R+C+R++GGVL E+
Sbjct: 22 SAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVER 81
Query: 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENE 131
TVKEV+P L N++Q+ +I +L++QL KG E+NE+++K +I+L G + P K+ +E
Sbjct: 82 TVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSE 140
Query: 132 SA---PRSAGVVVN 142
A SAGV+V+
Sbjct: 141 GAGAKASSAGVLVS 154
>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2 OS=Drosophila melanogaster
GN=l(3)01239 PE=2 SV=1
Length = 143
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L+ E + FQ LR EQR + L+ LE +L EHK V++TL+ D +R+CFR IGGVLCE
Sbjct: 10 LSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCE 69
Query: 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPK 127
+TVKEV+P L N+D + I + L+KKG E+N++K++ +I+++G A K
Sbjct: 70 RTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIRGEHLVAEGAK 126
>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480
PE=2 SV=1
Length = 148
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 72/104 (69%)
Query: 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT 72
++ V N ++ R+E QI + +++LE +++EH +V++ ++ LD R+CFR+IGGVL E+T
Sbjct: 16 EQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERT 75
Query: 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
+KEV+P + N+D L ++ L E L KK ++ E++ K+ I++
Sbjct: 76 IKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRI 119
>sp|Q55GN3|PFD2_DICDI Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2
PE=3 SV=1
Length = 116
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 78/107 (72%)
Query: 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLC 69
+LT+ ++ +++L+++Q+QI +++SE E ++ E+ +V++ +++L+ +R+CFR++GGVL
Sbjct: 7 QLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLV 66
Query: 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
E+TV EV+P + NRD + ++ L+E L+ K E+N++ + I++
Sbjct: 67 ERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113
>sp|A8WVJ9|PFD2_CAEBR Prefoldin subunit 2 OS=Caenorhabditis briggsae GN=pfd-2 PE=3 SV=1
Length = 142
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%)
Query: 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKE 75
V F+ LR +Q++IAT+++ +E+E E VLD +KDL D++CFRLI L E TVK+
Sbjct: 22 VVEKFKQLRDQQQEIATEVTRIEEERREIGRVLDVIKDLKPDQKCFRLISDSLVEYTVKD 81
Query: 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTS 122
VIP L N L + LNEQL +KG E+N++K +I++ K +
Sbjct: 82 VIPDLENNMTNLGLVSKQLNEQLVEKGKELNQHKTAHNIRILSEKET 128
>sp|Q9N5M2|PFD2_CAEEL Prefoldin subunit 2 OS=Caenorhabditis elegans GN=pdf-2 PE=3 SV=1
Length = 141
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%)
Query: 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKE 75
V F+ LR +Q+ IA +++ +E+E E VL+ +KDL+ D++CFRLI L E TVK+
Sbjct: 20 VVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKD 79
Query: 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQE 129
VIP L N L + LN+QL +KG E+N +K +I+L K SA K E
Sbjct: 80 VIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRLLTEKESAELRKAE 133
>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC227.10 PE=3 SV=1
Length = 114
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEV 76
YN + ++ +QIA K+ +LE + EHK+V+DTL +D +RRCFR+I GVL E+TV V
Sbjct: 15 YNSY---KSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTV 71
Query: 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
+P L T ++ + T +N L +Q + E +++ IQ+
Sbjct: 72 VPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111
>sp|P40005|PFD2_YEAST Prefoldin subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM4 PE=1 SV=2
Length = 111
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 18 NGFQNLRAEQRQI----ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
N FQ E +QI TK+ EL + EH IV+ TLKD + R+C+R+IGG L E V
Sbjct: 6 NVFQAKYNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDV 65
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119
+ +P L T ++ + I+ + E L + E ++K IQ+ N
Sbjct: 66 QTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVKN 111
>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
Length = 127
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 37 LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96
LE +LTE+ IV + L LDG F+L+G VL ++ + E T+ D + I
Sbjct: 33 LEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYES 92
Query: 97 QL 98
QL
Sbjct: 93 QL 94
>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1
Length = 114
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
EE+ +QNL+ E L +LE +L E+ VL+ L+ + D ++ IG L +++
Sbjct: 2 EELAKKYQNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSH 61
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQ 97
+E + T D +N I L Q
Sbjct: 62 EEAKTNVKTRLDFINKEIARLENQ 85
>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1
Length = 129
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 37 LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96
LE +LTE+ IV + L LDG F+L+G VL ++ + E T+ D + I
Sbjct: 33 LEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYES 92
Query: 97 QL 98
QL
Sbjct: 93 QL 94
>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1
Length = 129
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 37 LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96
LE +LTE+ IV + L LDG F+L+G VL ++ + E T+ D + I
Sbjct: 33 LEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYES 92
Query: 97 QL 98
QL
Sbjct: 93 QL 94
>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
Length = 129
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 37 LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96
LE +LTE+ IV + L LDG F+L+G VL ++ + E T+ D + I
Sbjct: 33 LEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYES 92
Query: 97 QL 98
QL
Sbjct: 93 QL 94
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKE 75
+QNL+ ++ + + LE +L E+K VLD L L D + ++L G VL ++ ++E
Sbjct: 18 SYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEE 74
>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6
PE=2 SV=1
Length = 126
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
EE N + L ++ + T E+E LTE K V L ++ D + ++LIG VL + +
Sbjct: 8 EEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDL 67
Query: 74 KEVIPTL 80
+E T+
Sbjct: 68 EEARSTV 74
>sp|Q8WXE1|ATRIP_HUMAN ATR-interacting protein OS=Homo sapiens GN=ATRIP PE=1 SV=1
Length = 791
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 23 LRAEQRQIATKLSELEQELT----EHKIVLDTLKD----LDGDRRCFRLIGGVLCEKTVK 74
L+A+ +++ K+ +E+E+ E KI+ D+L L+ RR L+ +
Sbjct: 117 LQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLE--------Q 168
Query: 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAP 134
E L+ + + + SL +L K E+NE + K + NK +A P + S
Sbjct: 169 EKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAA--PSVSHVSPR 226
Query: 135 RSAGVVVNP 143
++ VV+ P
Sbjct: 227 KNPSVVIKP 235
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ +L E + LDTLKDL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P+ L N +N L+ +LNE
Sbjct: 185 SEIAESHPSSNLLDLNPQSINKLLTALNE 213
>sp|Q3ITY6|PFDB_NATPD Prefoldin subunit beta OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=pfdB PE=3 SV=1
Length = 131
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 38 EQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ 97
E +L E + L+TL D++GD + ++ +G +L E E L D L + +L +Q
Sbjct: 34 ETQLRESETALETLDDIEGDTQMYQEVGELLIETDYDEAYENLEEKVDSLEVRVETLTKQ 93
>sp|Q9HSH0|PFDB_HALSA Prefoldin subunit beta OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pfdB PE=3 SV=1
Length = 125
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
Q+L+ + + +AT+ + EQ+L+E + LD L D++ +R +G +L E
Sbjct: 16 LQDLQEKAQNVATQKQQAEQQLSEAETALDALGDIEESTTMYREVGELLVE 66
>sp|B0R2X8|PFDB_HALS3 Prefoldin subunit beta OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pfdB PE=3 SV=1
Length = 125
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
Q+L+ + + +AT+ + EQ+L+E + LD L D++ +R +G +L E
Sbjct: 16 LQDLQEKAQNVATQKQQAEQQLSEAETALDALGDIEESTTMYREVGELLVE 66
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ +L E + LDTLKDL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P+ L N +N L+ +LNE
Sbjct: 185 SEIAESHPSSNLLDLNPQSINKLLTALNE 213
>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6
PE=3 SV=1
Length = 128
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
EE + + L ++ + + E+E LTE K V L +D D + ++L+G VL + +
Sbjct: 8 EEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDL 67
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQLT---KKGIE 104
+E T+ + + + I + +T KK IE
Sbjct: 68 EEARSTVEKRLEFIESEIKRVEASITDVNKKSIE 101
>sp|Q9VW97|LSDA_DROME Possible lysine-specific histone demethylase 1 OS=Drosophila
melanogaster GN=Su(var)3-3 PE=1 SV=1
Length = 890
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQ 39
+ T++ EE + F +L AE++Q+ KL ELEQ
Sbjct: 474 RNTQIKMEETISTFHDLHAEEKQMLAKLHELEQ 506
>sp|C5D7C7|Y799_GEOSW UPF0477 protein GWCH70_0799 OS=Geobacillus sp. (strain WCH70)
GN=GWCH70_0799 PE=3 SV=1
Length = 173
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 62 RLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
RL G+L +K+ +P +T RD N + QL + + E D+F + Q
Sbjct: 98 RLHSGILADKSEYVFVPHITIGRDLPNAEYADVYGQLRMQNVHFEETVDRFHLLYQ 153
>sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana
GN=At5g47540 PE=2 SV=1
Length = 343
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108
R+ +L+G +L +++ V+ ++RD L L+N L E + K I+I +
Sbjct: 232 RQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRE--SSKSIQIEAF 280
>sp|E9PGG2|ANHX_HUMAN Anomalous homeobox protein OS=Homo sapiens GN=ANHX PE=2 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTE 43
T LT E+VYN F N R QR + + +Q E
Sbjct: 174 TSLTPEQVYNWFANYRRRQRALPQHMKPAQQATAE 208
>sp|Q9YC11|PFDB_AERPE Prefoldin subunit beta OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pfdB PE=3
SV=1
Length = 123
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEV 76
Y + LR + + + +E L E + VL L+ L D +RL G VL +K+ EV
Sbjct: 13 YTKYLKLRETLSVVMREKATVEAGLAEVESVLKELEGLPEDAELYRLTGFVLVKKSKNEV 72
Query: 77 IPTLTTNRDQLNTLINSLNEQ 97
+ L ++ L + L Q
Sbjct: 73 VEDLNKRKEDLELKLKVLKSQ 93
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 55 DGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102
D D+ + G+ EKT E I TLT +++L ++ LN LT+ G
Sbjct: 75 DVDKIVVSVGAGISVEKTPTEAIETLTQRKEELGKVVERLNGTLTQIG 122
>sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic OS=Homo sapiens GN=SPTB PE=1 SV=5
Length = 2137
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 34 LSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93
+ E E+ L E ++ DTL+DL+ + F ++ + + TL T D +N NS
Sbjct: 864 MGEKEKWLAEMEMP-DTLEDLEVVQHRFDILD---------QEMKTLMTQIDGVNLAANS 913
Query: 94 LNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAPRSAGVVVN 142
L E + E+ +Y+D + + Q +T ++ +SA R V+
Sbjct: 914 LVESGHPRSREVKQYQDHLNTRWQAFQTLVSERREAVDSALRVHNYCVD 962
>sp|A3N3S4|TATB_ACTP2 Sec-independent protein translocase protein TatB OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=tatB PE=3
SV=1
Length = 195
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 4 AKKKTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT 50
AK + TKLTDE+V N N+ E++ +AT E Q+ E++ ++DT
Sbjct: 99 AKGEITKLTDEQVANIQNNIAQEEQNLATVQPETLQKSEENQPLVDT 145
>sp|Q8BMG1|ATRIP_MOUSE ATR-interacting protein OS=Mus musculus GN=Atrip PE=1 SV=2
Length = 785
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 23 LRAEQRQIATKLSELEQELT----EHKIVLDTLKD----LDGDRRCFRLIGGVLCEKTVK 74
L+ + +++ KL +E+E+ E KI+ D+L+ L+ +R L+ +
Sbjct: 117 LQIQYKELKEKLKAMEEEILIKNGEIKILRDSLRQTESVLEEQKRSHFLLE--------Q 168
Query: 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAP 134
E L+ + + + SL +L K E+NE + K + NK +AP + +P
Sbjct: 169 EKTQALSEKEKEFSRKLQSLQSELQFKDAEMNELRTKSQSNGRTNKPAAP---SVSHVSP 225
Query: 135 RSAGVVV 141
R VV
Sbjct: 226 RKGSSVV 232
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
Length = 949
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ +L E + LDTLKDL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANRVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPK 127
+ E P+ L +N L+ +LN E E+ F + GN PK
Sbjct: 185 SEIAESHPSSNLLDLKAQSINKLLTALN--------ECTEWAQIFILDCLGNYM----PK 232
Query: 128 QENES 132
+ E+
Sbjct: 233 DDREA 237
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1
Length = 951
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ ++ E + LD+L+DL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P L N +N L+ +LNE
Sbjct: 185 SEISESHPNSNLLDLNPQNINKLLTALNE 213
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ ++ E + LD+L+DL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P L N +N L+ +LNE
Sbjct: 185 SEISESHPNSNLLDLNPQNINKLLTALNE 213
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ ++ E + LD+L+DL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P L N +N L+ +LNE
Sbjct: 185 SEISESHPNSNLLDLNPQNINKLLTALNE 213
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ ++ E + LD+L+DL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P L N +N L+ +LNE
Sbjct: 185 SEISESHPNSNLLDLNPQNINKLLTALNE 213
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2
Length = 937
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
L DE+ Y +R KL ++ ++ E + LD+L+DL D + V
Sbjct: 130 LKDEDPY-----VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184
Query: 71 KTVKEVIPT---LTTNRDQLNTLINSLNE 96
+ E P L N +N L+ +LNE
Sbjct: 185 SEISESHPNSNLLDLNPQNINKLLTALNE 213
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza
sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2
Length = 793
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
+E + G ++LRAE ++ E+E+ E + L TL ++ RLIG +L +K V
Sbjct: 297 QEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNI-------RLIGELLKQKMV 349
Query: 74 KEVI 77
E I
Sbjct: 350 PEKI 353
>sp|B4HHG8|EI3D2_DROSE Eukaryotic translation initiation factor 3 subunit D-2
OS=Drosophila sechellia GN=eIF3-S7-2 PE=3 SV=1
Length = 550
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
RR R +G V + I T + + ++ E+L K Y D+FD+ L
Sbjct: 241 RRLSRTMGNVFATDEILSTIMCCTRSNYSWDVVV----EKLGTKVFLDKRYNDQFDL-LT 295
Query: 118 GNKTSAPPPKQENES 132
N+TS PP +E S
Sbjct: 296 VNETSVEPPMEEEGS 310
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 29 QIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN 88
Q + EL++E+ EH++VLDT+ ++ + + E++P R+ L+
Sbjct: 5600 QFQQRQKELKKEVMEHRLVLDTVNEVS---------------RALLELVPWRA--REGLD 5642
Query: 89 TLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
L++ NEQ I + D+ D +Q
Sbjct: 5643 KLVSDANEQYKLVSDTIGQRVDEIDAAIQ 5671
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,855,185
Number of Sequences: 539616
Number of extensions: 1971096
Number of successful extensions: 8011
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 7902
Number of HSP's gapped (non-prelim): 246
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)