Query psy13667
Match_columns 144
No_of_seqs 130 out of 534
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:20:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4098|consensus 100.0 1.9E-32 4.1E-37 202.7 11.6 116 8-123 12-127 (140)
2 TIGR02338 gimC_beta prefoldin, 99.9 3.1E-26 6.7E-31 165.6 12.4 105 9-113 1-105 (110)
3 KOG3478|consensus 99.9 5.2E-26 1.1E-30 164.1 11.4 113 10-123 4-116 (120)
4 COG1382 GimC Prefoldin, chaper 99.9 6.5E-24 1.4E-28 155.7 12.7 110 8-118 3-112 (119)
5 PRK09343 prefoldin subunit bet 99.9 1.5E-23 3.2E-28 154.4 12.6 111 8-118 4-114 (121)
6 cd00632 Prefoldin_beta Prefold 99.9 1.2E-23 2.6E-28 150.7 11.7 104 13-117 1-104 (105)
7 PF01920 Prefoldin_2: Prefoldi 99.9 3E-20 6.6E-25 131.1 13.8 104 14-117 1-104 (106)
8 cd00890 Prefoldin Prefoldin is 99.6 3.1E-14 6.6E-19 103.6 13.4 99 14-112 2-124 (129)
9 PRK03947 prefoldin subunit alp 99.6 7.3E-14 1.6E-18 104.1 13.4 109 9-118 4-136 (140)
10 cd00584 Prefoldin_alpha Prefol 99.4 3.9E-12 8.5E-17 93.4 12.8 99 14-112 2-124 (129)
11 TIGR00293 prefoldin, archaeal 99.4 1.3E-11 2.9E-16 90.2 13.2 99 14-112 2-123 (126)
12 PRK14011 prefoldin subunit alp 99.3 2.8E-10 6E-15 86.3 13.7 108 11-118 3-131 (144)
13 COG1730 GIM5 Predicted prefold 99.2 3.1E-10 6.8E-15 86.2 13.5 108 10-118 5-136 (145)
14 PRK01203 prefoldin subunit alp 98.8 3.7E-07 8.1E-12 68.2 12.9 96 14-109 3-121 (130)
15 PF02996 Prefoldin: Prefoldin 98.7 7.5E-08 1.6E-12 69.3 8.4 90 23-112 1-114 (120)
16 KOG1760|consensus 97.7 0.0024 5.2E-08 47.5 12.9 102 11-112 16-118 (131)
17 KOG3048|consensus 97.6 0.0063 1.4E-07 46.4 14.3 108 10-117 12-143 (153)
18 KOG3501|consensus 96.9 0.019 4.1E-07 41.7 9.7 100 13-112 5-104 (114)
19 PRK03947 prefoldin subunit alp 96.9 0.0062 1.3E-07 45.2 7.5 102 16-118 4-129 (140)
20 TIGR00293 prefoldin, archaeal 96.2 0.024 5.2E-07 41.1 7.0 94 21-117 2-120 (126)
21 KOG3313|consensus 95.7 0.22 4.7E-06 39.3 10.6 95 13-107 39-160 (187)
22 PF13758 Prefoldin_3: Prefoldi 95.2 0.082 1.8E-06 37.9 6.2 42 64-105 57-98 (99)
23 COG1730 GIM5 Predicted prefold 95.2 0.12 2.6E-06 39.4 7.3 102 18-120 6-131 (145)
24 cd00632 Prefoldin_beta Prefold 95.1 0.15 3.3E-06 36.1 7.2 95 12-109 7-104 (105)
25 PRK09343 prefoldin subunit bet 94.8 0.26 5.6E-06 36.1 8.0 100 13-112 16-115 (121)
26 PRK11637 AmiB activator; Provi 94.1 1.6 3.5E-05 37.9 12.9 89 15-118 44-132 (428)
27 PRK14011 prefoldin subunit alp 93.9 0.54 1.2E-05 35.7 8.3 101 18-119 3-124 (144)
28 PF01920 Prefoldin_2: Prefoldi 93.7 0.84 1.8E-05 31.5 8.5 96 12-107 6-101 (106)
29 TIGR02338 gimC_beta prefoldin, 93.5 0.7 1.5E-05 33.0 8.0 37 71-107 70-106 (110)
30 COG1382 GimC Prefoldin, chaper 93.4 0.78 1.7E-05 33.9 8.1 97 13-110 15-112 (119)
31 PRK11637 AmiB activator; Provi 92.2 3.8 8.3E-05 35.6 12.3 39 74-112 95-133 (428)
32 PF12718 Tropomyosin_1: Tropom 91.9 2.4 5.2E-05 31.9 9.3 35 19-53 36-70 (143)
33 PF08946 Osmo_CC: Osmosensory 91.5 0.47 1E-05 29.4 4.1 41 72-112 2-42 (46)
34 PRK02224 chromosome segregatio 91.4 3.7 8.1E-05 38.5 11.9 98 12-110 406-503 (880)
35 PRK01156 chromosome segregatio 90.7 6.8 0.00015 37.0 13.0 91 18-112 416-506 (895)
36 PRK03918 chromosome segregatio 89.9 8.6 0.00019 36.0 12.9 84 22-108 402-485 (880)
37 PRK01203 prefoldin subunit alp 89.7 2.9 6.3E-05 31.3 7.9 94 22-115 4-120 (130)
38 KOG3047|consensus 89.5 7.7 0.00017 29.4 12.3 104 9-112 28-142 (157)
39 PF04949 Transcrip_act: Transc 87.8 9.5 0.00021 29.4 9.6 86 15-115 31-124 (159)
40 cd00890 Prefoldin Prefoldin is 87.3 8.5 0.00018 27.3 12.2 94 13-108 8-127 (129)
41 PF09726 Macoilin: Transmembra 86.9 11 0.00023 35.5 11.3 41 72-112 535-575 (697)
42 PRK03918 chromosome segregatio 85.9 7.5 0.00016 36.4 9.9 24 78-101 310-333 (880)
43 PF04977 DivIC: Septum formati 84.7 8 0.00017 25.1 7.1 50 15-64 21-78 (80)
44 PF04102 SlyX: SlyX; InterPro 82.7 8.2 0.00018 25.4 6.4 45 73-118 2-46 (69)
45 PRK00736 hypothetical protein; 82.6 8.2 0.00018 25.5 6.4 40 73-112 3-42 (68)
46 PHA02562 46 endonuclease subun 82.3 14 0.00031 32.6 9.7 40 13-52 301-340 (562)
47 cd00584 Prefoldin_alpha Prefol 82.2 16 0.00035 26.2 10.3 92 21-112 2-117 (129)
48 PF08657 DASH_Spc34: DASH comp 81.6 15 0.00033 30.4 9.0 47 15-61 177-223 (259)
49 PF09006 Surfac_D-trimer: Lung 81.5 7.6 0.00017 24.1 5.4 45 21-65 2-46 (46)
50 PF12718 Tropomyosin_1: Tropom 81.1 21 0.00045 26.8 10.5 28 79-106 77-104 (143)
51 PRK00295 hypothetical protein; 80.6 11 0.00023 24.9 6.4 40 73-112 3-42 (68)
52 PHA01750 hypothetical protein 80.3 10 0.00022 25.5 6.1 44 69-112 28-72 (75)
53 PF08172 CASP_C: CASP C termin 79.8 32 0.0007 28.2 10.6 101 14-115 2-125 (248)
54 PF08614 ATG16: Autophagy prot 79.7 9.4 0.0002 29.7 6.9 41 13-53 69-109 (194)
55 TIGR02231 conserved hypothetic 79.6 33 0.00072 30.5 11.1 103 9-117 69-172 (525)
56 PRK04325 hypothetical protein; 79.0 12 0.00026 25.1 6.3 40 73-112 7-46 (74)
57 KOG1029|consensus 77.8 37 0.0008 32.9 11.0 31 13-43 488-518 (1118)
58 COG2433 Uncharacterized conser 77.6 34 0.00073 32.0 10.5 105 11-120 415-519 (652)
59 PRK00888 ftsB cell division pr 77.5 19 0.00042 25.6 7.4 54 13-66 29-90 (105)
60 PRK14127 cell division protein 77.4 20 0.00044 26.0 7.5 43 70-112 25-67 (109)
61 PHA02562 46 endonuclease subun 77.2 46 0.00099 29.4 11.2 30 74-103 298-327 (562)
62 PF15070 GOLGA2L5: Putative go 77.1 57 0.0012 30.3 12.0 76 11-92 29-104 (617)
63 PRK05771 V-type ATP synthase s 77.0 60 0.0013 29.8 13.1 38 17-54 92-129 (646)
64 KOG3335|consensus 76.5 7.5 0.00016 30.7 5.3 57 56-112 74-136 (181)
65 PF13118 DUF3972: Protein of u 76.5 12 0.00026 28.0 6.2 51 62-112 58-122 (126)
66 PF13093 FTA4: Kinetochore com 76.4 13 0.00029 29.8 7.0 73 13-100 137-209 (213)
67 TIGR00606 rad50 rad50. This fa 75.5 36 0.00077 34.0 10.9 44 69-112 882-925 (1311)
68 PRK04406 hypothetical protein; 75.2 17 0.00037 24.5 6.3 40 73-112 9-48 (75)
69 PRK02793 phi X174 lysis protei 75.2 18 0.00039 24.1 6.3 40 73-112 6-45 (72)
70 PRK04863 mukB cell division pr 75.2 46 0.00099 34.1 11.6 99 16-120 388-487 (1486)
71 PF02403 Seryl_tRNA_N: Seryl-t 75.1 25 0.00054 24.4 10.6 75 16-109 27-101 (108)
72 PRK02119 hypothetical protein; 74.6 18 0.00039 24.2 6.2 40 73-112 7-46 (73)
73 PRK02224 chromosome segregatio 73.4 63 0.0014 30.4 11.6 25 18-42 206-230 (880)
74 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.1 34 0.00073 25.0 10.6 40 73-112 82-121 (132)
75 PF03961 DUF342: Protein of un 72.7 52 0.0011 28.8 10.3 78 22-108 331-408 (451)
76 TIGR02169 SMC_prok_A chromosom 72.5 92 0.002 29.8 12.6 33 78-110 451-483 (1164)
77 PF00435 Spectrin: Spectrin re 72.4 23 0.00051 22.9 7.1 29 78-106 76-104 (105)
78 PF15619 Lebercilin: Ciliary p 72.1 47 0.001 26.2 11.0 96 9-118 59-161 (194)
79 PF08317 Spc7: Spc7 kinetochor 71.7 45 0.00099 28.0 9.4 36 21-56 173-208 (325)
80 PLN02678 seryl-tRNA synthetase 69.9 82 0.0018 28.1 11.5 78 16-112 31-108 (448)
81 PF05816 TelA: Toxic anion res 69.7 27 0.00058 29.5 7.6 107 11-117 84-197 (333)
82 PF04912 Dynamitin: Dynamitin 69.7 30 0.00066 29.7 8.0 46 71-117 308-363 (388)
83 PF06698 DUF1192: Protein of u 68.7 14 0.0003 24.0 4.4 40 67-106 12-52 (59)
84 KOG0250|consensus 67.8 92 0.002 31.0 11.4 91 13-112 339-431 (1074)
85 PF05377 FlaC_arch: Flagella a 67.3 30 0.00066 22.2 5.9 34 79-112 4-37 (55)
86 PF07106 TBPIP: Tat binding pr 66.9 53 0.0011 24.8 11.3 83 10-112 71-161 (169)
87 KOG1655|consensus 66.7 14 0.0003 29.9 4.9 49 60-108 4-52 (218)
88 PRK01156 chromosome segregatio 66.4 65 0.0014 30.5 10.2 30 26-55 250-279 (895)
89 PF05667 DUF812: Protein of un 66.3 25 0.00055 32.5 7.2 98 15-112 325-424 (594)
90 PF07889 DUF1664: Protein of u 66.2 28 0.00061 25.9 6.2 38 75-112 61-98 (126)
91 PRK10884 SH3 domain-containing 65.7 68 0.0015 25.6 12.0 39 77-115 134-172 (206)
92 PF14712 Snapin_Pallidin: Snap 65.6 39 0.00084 22.8 9.9 41 9-49 12-52 (92)
93 PF03962 Mnd1: Mnd1 family; I 65.3 64 0.0014 25.2 10.5 39 19-57 63-101 (188)
94 PF12325 TMF_TATA_bd: TATA ele 64.3 55 0.0012 24.0 11.4 93 8-112 13-105 (120)
95 PF05667 DUF812: Protein of un 64.1 1.2E+02 0.0025 28.2 11.0 85 13-106 442-529 (594)
96 PRK05771 V-type ATP synthase s 63.3 66 0.0014 29.5 9.3 78 34-112 45-123 (646)
97 KOG2264|consensus 62.9 73 0.0016 30.0 9.3 74 14-116 82-155 (907)
98 TIGR03017 EpsF chain length de 62.6 16 0.00035 31.4 5.0 49 67-115 156-204 (444)
99 PRK05431 seryl-tRNA synthetase 62.5 1.1E+02 0.0024 26.9 11.3 77 17-112 27-103 (425)
100 smart00150 SPEC Spectrin repea 62.4 15 0.00032 23.8 3.8 32 8-39 28-59 (101)
101 PF03148 Tektin: Tektin family 62.2 1E+02 0.0023 26.6 10.0 95 12-110 252-352 (384)
102 TIGR02977 phageshock_pspA phag 62.1 77 0.0017 25.1 12.4 97 12-113 32-137 (219)
103 PRK10884 SH3 domain-containing 62.0 80 0.0017 25.2 9.8 33 80-112 130-162 (206)
104 PF11471 Sugarporin_N: Maltopo 62.0 19 0.00041 23.3 4.1 32 77-108 27-58 (60)
105 PF11285 DUF3086: Protein of u 61.7 22 0.00048 29.8 5.4 34 73-106 2-35 (283)
106 TIGR00414 serS seryl-tRNA synt 61.4 1.1E+02 0.0024 26.7 11.2 79 16-112 28-106 (418)
107 KOG0996|consensus 61.4 1.3E+02 0.0029 30.3 11.2 20 75-94 858-877 (1293)
108 smart00787 Spc7 Spc7 kinetocho 60.4 1.1E+02 0.0023 26.0 11.1 37 21-57 168-204 (312)
109 KOG0976|consensus 60.3 57 0.0012 31.9 8.3 93 12-107 107-208 (1265)
110 PF10393 Matrilin_ccoil: Trime 60.1 19 0.00041 22.4 3.7 29 69-97 17-45 (47)
111 KOG2196|consensus 60.0 1E+02 0.0022 25.7 10.6 93 9-109 111-205 (254)
112 PF05529 Bap31: B-cell recepto 60.0 77 0.0017 24.3 10.8 38 75-112 154-191 (192)
113 PF10359 Fmp27_WPPW: RNA pol I 59.8 66 0.0014 28.6 8.5 68 25-112 163-230 (475)
114 COG2433 Uncharacterized conser 59.4 52 0.0011 30.8 7.8 89 19-112 416-504 (652)
115 PRK00846 hypothetical protein; 58.9 55 0.0012 22.3 6.8 42 71-112 9-50 (77)
116 PF13949 ALIX_LYPXL_bnd: ALIX 58.4 60 0.0013 26.2 7.5 103 8-112 6-114 (296)
117 PF06818 Fez1: Fez1; InterPro 58.2 97 0.0021 24.9 9.6 90 12-101 67-157 (202)
118 COG1579 Zn-ribbon protein, pos 57.7 1.1E+02 0.0023 25.2 10.9 32 17-48 44-75 (239)
119 COG5293 Predicted ATPase [Gene 57.3 1.2E+02 0.0025 27.9 9.4 55 58-112 304-365 (591)
120 PF04201 TPD52: Tumour protein 57.1 46 0.00099 25.9 6.1 40 77-116 31-70 (162)
121 KOG1003|consensus 56.5 1.1E+02 0.0023 24.8 10.1 82 14-118 112-193 (205)
122 PF13514 AAA_27: AAA domain 56.4 64 0.0014 31.6 8.4 30 19-48 737-766 (1111)
123 PF13514 AAA_27: AAA domain 56.1 71 0.0015 31.3 8.7 95 12-106 175-273 (1111)
124 PF09738 DUF2051: Double stran 55.9 82 0.0018 26.7 8.0 92 19-112 148-249 (302)
125 PF08656 DASH_Dad3: DASH compl 55.5 18 0.00039 24.8 3.3 44 11-54 3-46 (78)
126 COG3883 Uncharacterized protei 55.4 43 0.00092 28.0 6.1 36 74-109 37-72 (265)
127 PF00170 bZIP_1: bZIP transcri 54.9 52 0.0011 20.8 6.5 38 74-111 25-62 (64)
128 PF02996 Prefoldin: Prefoldin 54.8 45 0.00099 23.3 5.5 78 35-112 6-107 (120)
129 PF05377 FlaC_arch: Flagella a 54.6 36 0.00078 21.9 4.4 36 77-112 9-44 (55)
130 TIGR02977 phageshock_pspA phag 54.6 1.1E+02 0.0023 24.3 8.3 37 14-50 102-138 (219)
131 smart00338 BRLZ basic region l 54.5 53 0.0012 20.8 6.3 39 74-112 25-63 (65)
132 KOG0933|consensus 54.1 56 0.0012 32.4 7.3 44 69-112 774-817 (1174)
133 PF04508 Pox_A_type_inc: Viral 53.6 20 0.00043 19.1 2.5 20 26-45 2-21 (23)
134 PF00261 Tropomyosin: Tropomyo 53.0 1.2E+02 0.0025 24.3 12.4 45 72-117 180-224 (237)
135 TIGR03185 DNA_S_dndD DNA sulfu 52.8 1.2E+02 0.0025 28.0 9.1 36 14-49 205-240 (650)
136 PRK11519 tyrosine kinase; Prov 52.6 27 0.00058 32.5 5.0 53 62-114 247-299 (719)
137 PF05103 DivIVA: DivIVA protei 52.4 7.9 0.00017 27.6 1.2 41 13-53 27-67 (131)
138 KOG4196|consensus 52.4 94 0.002 23.5 6.9 44 76-120 75-118 (135)
139 COG4026 Uncharacterized protei 52.3 1.4E+02 0.003 24.9 9.2 35 78-112 166-200 (290)
140 KOG0250|consensus 52.1 2.5E+02 0.0054 28.1 11.4 32 81-112 393-424 (1074)
141 PRK04325 hypothetical protein; 51.7 66 0.0014 21.5 5.6 36 77-112 18-53 (74)
142 PRK09841 cryptic autophosphory 51.7 29 0.00062 32.4 5.0 51 64-114 249-299 (726)
143 PF06160 EzrA: Septation ring 51.7 1.9E+02 0.0041 26.3 10.2 92 16-118 58-150 (560)
144 PF04156 IncA: IncA protein; 50.7 1.1E+02 0.0023 23.2 11.9 33 19-51 82-114 (191)
145 PTZ00464 SNF-7-like protein; P 50.6 50 0.0011 26.5 5.7 36 70-105 13-48 (211)
146 PF12128 DUF3584: Protein of u 49.1 2.4E+02 0.0051 28.2 11.0 51 62-112 879-929 (1201)
147 TIGR03185 DNA_S_dndD DNA sulfu 48.8 2.2E+02 0.0047 26.2 11.8 41 72-112 425-465 (650)
148 PF04156 IncA: IncA protein; 48.6 1.2E+02 0.0025 23.0 8.2 41 12-52 82-122 (191)
149 PRK08032 fliD flagellar cappin 48.1 38 0.00083 30.0 5.1 37 79-115 403-439 (462)
150 TIGR02231 conserved hypothetic 47.8 1.7E+02 0.0037 26.0 9.2 99 16-119 69-167 (525)
151 PF04799 Fzo_mitofusin: fzo-li 47.7 89 0.0019 24.5 6.5 43 70-112 115-167 (171)
152 TIGR01010 BexC_CtrB_KpsE polys 47.5 42 0.0009 28.3 5.0 33 82-114 170-202 (362)
153 COG1579 Zn-ribbon protein, pos 47.3 1.6E+02 0.0035 24.2 10.4 27 80-106 115-141 (239)
154 COG5509 Uncharacterized small 47.3 43 0.00093 22.1 3.9 26 77-102 27-52 (65)
155 cd04776 HTH_GnyR Helix-Turn-He 47.2 93 0.002 22.2 6.2 68 33-112 50-117 (118)
156 COG3883 Uncharacterized protei 47.1 1.7E+02 0.0037 24.5 11.6 77 13-118 33-109 (265)
157 PRK04863 mukB cell division pr 46.7 98 0.0021 31.8 8.1 39 74-112 984-1022(1486)
158 PF14282 FlxA: FlxA-like prote 46.6 73 0.0016 22.6 5.5 34 12-45 45-78 (106)
159 PF07195 FliD_C: Flagellar hoo 46.6 52 0.0011 26.2 5.2 39 78-116 189-227 (239)
160 smart00787 Spc7 Spc7 kinetocho 46.5 1.8E+02 0.0039 24.6 11.2 22 16-37 177-198 (312)
161 PF03148 Tektin: Tektin family 45.9 1.9E+02 0.0041 25.0 8.9 89 20-109 59-150 (384)
162 PF08287 DASH_Spc19: Spc19; I 45.4 1.3E+02 0.0029 22.8 8.8 84 21-112 7-91 (153)
163 TIGR00606 rad50 rad50. This fa 44.8 2.9E+02 0.0064 27.7 11.0 40 73-112 827-866 (1311)
164 KOG0243|consensus 44.7 3.3E+02 0.0072 27.2 11.1 40 72-111 473-512 (1041)
165 PRK06266 transcription initiat 44.6 21 0.00045 27.8 2.5 31 63-93 141-171 (178)
166 PF07334 IFP_35_N: Interferon- 44.4 62 0.0014 22.1 4.5 32 85-116 3-34 (76)
167 cd00238 ERp29c ERp29 and ERp38 44.1 50 0.0011 23.0 4.2 36 79-114 51-89 (93)
168 PF10046 BLOC1_2: Biogenesis o 44.1 1.1E+02 0.0023 21.3 6.0 36 17-52 34-69 (99)
169 PF02388 FemAB: FemAB family; 44.1 75 0.0016 27.5 6.2 47 66-112 233-289 (406)
170 KOG0995|consensus 44.0 1.6E+02 0.0034 27.4 8.3 86 24-112 227-317 (581)
171 KOG0933|consensus 43.9 2.1E+02 0.0047 28.6 9.5 25 17-41 683-707 (1174)
172 KOG0996|consensus 43.8 3.2E+02 0.0069 27.8 10.7 45 14-58 394-438 (1293)
173 PF09726 Macoilin: Transmembra 43.8 2.9E+02 0.0063 26.2 10.4 99 12-110 546-657 (697)
174 PLN03184 chloroplast Hsp70; Pr 43.8 2.7E+02 0.0059 25.9 12.5 47 66-112 587-634 (673)
175 PF10473 CENP-F_leu_zip: Leuci 43.3 1.2E+02 0.0026 22.9 6.4 33 80-112 92-124 (140)
176 PRK14127 cell division protein 43.2 96 0.0021 22.5 5.7 37 13-49 32-68 (109)
177 TIGR03752 conj_TIGR03752 integ 43.0 2.6E+02 0.0056 25.4 11.0 85 9-107 57-141 (472)
178 COG4550 Predicted membrane pro 42.7 79 0.0017 23.4 5.1 70 33-109 26-100 (120)
179 COG2882 FliJ Flagellar biosynt 41.3 1.6E+02 0.0035 22.5 12.1 79 12-101 17-97 (148)
180 TIGR00634 recN DNA repair prot 41.1 2.7E+02 0.0059 25.1 10.8 45 12-56 162-206 (563)
181 PRK04778 septation ring format 41.0 2.8E+02 0.006 25.2 11.9 100 11-112 317-427 (569)
182 PRK04406 hypothetical protein; 40.7 1.1E+02 0.0024 20.5 6.3 34 79-112 8-41 (75)
183 COG1196 Smc Chromosome segrega 40.7 3.8E+02 0.0082 26.6 11.6 40 73-112 875-914 (1163)
184 PF12548 DUF3740: Sulfatase pr 40.6 75 0.0016 24.1 5.0 48 54-101 77-125 (145)
185 PRK10698 phage shock protein P 40.5 1.9E+02 0.0041 23.1 8.3 37 15-51 103-139 (222)
186 PF04859 DUF641: Plant protein 39.9 53 0.0011 24.6 4.0 68 45-112 48-117 (131)
187 TIGR01005 eps_transp_fam exopo 39.9 56 0.0012 30.3 5.0 51 65-115 177-227 (754)
188 PRK09039 hypothetical protein; 39.3 2.4E+02 0.0053 24.0 10.5 41 13-53 125-165 (343)
189 PF08286 Spc24: Spc24 subunit 39.3 3.6 7.9E-05 29.7 -2.3 13 59-72 65-77 (118)
190 COG1196 Smc Chromosome segrega 39.2 4E+02 0.0087 26.5 11.3 21 34-54 346-366 (1163)
191 PF04012 PspA_IM30: PspA/IM30 39.1 1.8E+02 0.004 22.6 10.5 99 11-112 30-135 (221)
192 PF10234 Cluap1: Clusterin-ass 38.9 1.1E+02 0.0025 25.5 6.2 48 62-109 156-203 (267)
193 PF10498 IFT57: Intra-flagella 38.9 2.6E+02 0.0056 24.2 9.0 18 37-54 268-285 (359)
194 PF10481 CENP-F_N: Cenp-F N-te 38.5 2.5E+02 0.0054 23.9 11.6 37 84-121 97-133 (307)
195 cd04769 HTH_MerR2 Helix-Turn-H 38.3 1.4E+02 0.0029 21.1 5.8 65 31-109 49-113 (116)
196 PF10186 Atg14: UV radiation r 38.2 2E+02 0.0044 22.8 11.5 32 79-110 67-98 (302)
197 KOG1760|consensus 38.1 1.7E+02 0.0037 21.9 9.2 86 19-105 31-118 (131)
198 PF11068 YlqD: YlqD protein; 38.0 1.2E+02 0.0025 22.6 5.6 41 66-106 11-51 (131)
199 PRK14160 heat shock protein Gr 37.8 1.1E+02 0.0024 24.7 5.8 30 83-112 55-84 (211)
200 PF02994 Transposase_22: L1 tr 37.8 1.2E+02 0.0027 26.1 6.5 44 78-121 154-200 (370)
201 PF10018 Med4: Vitamin-D-recep 37.6 1.4E+02 0.003 23.1 6.2 38 14-51 25-62 (188)
202 PRK13729 conjugal transfer pil 37.6 1.3E+02 0.0028 27.2 6.7 35 78-112 79-113 (475)
203 PF05010 TACC: Transforming ac 37.2 2.2E+02 0.0047 22.8 9.8 27 27-53 25-51 (207)
204 PF10168 Nup88: Nuclear pore c 37.0 3.7E+02 0.0081 25.5 10.0 31 77-107 634-664 (717)
205 PF14257 DUF4349: Domain of un 37.0 2.2E+02 0.0048 22.8 7.7 41 77-119 164-204 (262)
206 PF11348 DUF3150: Protein of u 37.0 1.1E+02 0.0023 25.2 5.8 52 58-112 67-119 (257)
207 PF08657 DASH_Spc34: DASH comp 36.9 66 0.0014 26.6 4.5 56 60-115 141-213 (259)
208 PRK04778 septation ring format 36.7 2.3E+02 0.0049 25.8 8.3 99 14-112 313-420 (569)
209 PF14193 DUF4315: Domain of un 36.4 1.1E+02 0.0023 21.1 4.8 28 84-111 3-30 (83)
210 PRK02793 phi X174 lysis protei 36.3 1.3E+02 0.0028 19.9 5.8 38 75-112 15-52 (72)
211 PF14584 DUF4446: Protein of u 36.3 90 0.002 23.7 4.9 41 72-112 43-83 (151)
212 PLN02320 seryl-tRNA synthetase 36.2 3.4E+02 0.0073 24.8 11.3 76 17-112 92-167 (502)
213 COG1315 Uncharacterized conser 36.2 3.5E+02 0.0076 25.0 9.3 33 15-47 407-439 (543)
214 COG3853 TelA Uncharacterized p 36.1 1.1E+02 0.0023 27.1 5.8 43 11-53 130-172 (386)
215 PRK02119 hypothetical protein; 36.1 1.3E+02 0.0028 20.0 5.6 39 74-112 15-53 (73)
216 PF14662 CCDC155: Coiled-coil 35.8 2.3E+02 0.0049 22.7 7.6 28 27-54 45-72 (193)
217 smart00435 TOPEUc DNA Topoisom 35.8 2.7E+02 0.0059 24.6 8.3 32 23-54 275-306 (391)
218 cd01109 HTH_YyaN Helix-Turn-He 35.6 1.5E+02 0.0032 20.7 5.7 59 33-106 52-110 (113)
219 PF10018 Med4: Vitamin-D-recep 35.3 1.2E+02 0.0026 23.5 5.5 39 78-116 25-63 (188)
220 PF02994 Transposase_22: L1 tr 35.1 1E+02 0.0023 26.5 5.6 37 76-112 145-181 (370)
221 PRK10722 hypothetical protein; 34.8 1.1E+02 0.0025 25.3 5.5 43 13-55 160-206 (247)
222 KOG4010|consensus 34.8 1.6E+02 0.0035 23.6 6.1 42 77-118 46-87 (208)
223 PF12761 End3: Actin cytoskele 34.7 1.7E+02 0.0037 23.4 6.3 84 22-109 100-194 (195)
224 PF13600 DUF4140: N-terminal d 34.7 1.2E+02 0.0025 20.8 4.9 33 74-106 69-101 (104)
225 TIGR03007 pepcterm_ChnLen poly 34.5 56 0.0012 28.6 4.0 37 78-114 157-193 (498)
226 PRK06798 fliD flagellar cappin 34.5 61 0.0013 28.7 4.2 33 80-112 377-409 (440)
227 PRK13922 rod shape-determining 34.4 2E+02 0.0043 23.2 7.0 43 13-55 71-113 (276)
228 PF13815 Dzip-like_N: Iguana/D 34.3 1.7E+02 0.0037 20.8 6.1 32 77-108 82-113 (118)
229 PRK13182 racA polar chromosome 34.0 1.2E+02 0.0025 23.7 5.2 29 74-102 84-112 (175)
230 KOG2150|consensus 33.9 3.9E+02 0.0085 24.9 12.3 88 10-103 44-143 (575)
231 PRK07352 F0F1 ATP synthase sub 33.9 1.6E+02 0.0035 22.2 6.0 37 76-112 44-80 (174)
232 PF15233 SYCE1: Synaptonemal c 33.8 1.3E+02 0.0028 22.7 5.2 37 8-51 3-39 (134)
233 PF07888 CALCOCO1: Calcium bin 33.8 3.9E+02 0.0084 24.7 11.3 29 16-44 155-183 (546)
234 PRK06664 fliD flagellar hook-a 33.7 74 0.0016 29.8 4.7 37 80-116 598-634 (661)
235 CHL00019 atpF ATP synthase CF0 33.5 1.6E+02 0.0035 22.5 6.0 37 76-112 49-85 (184)
236 PRK00846 hypothetical protein; 33.4 1.6E+02 0.0034 20.1 5.7 20 93-112 38-57 (77)
237 PF10146 zf-C4H2: Zinc finger- 33.4 2.6E+02 0.0057 22.7 12.4 39 73-111 65-103 (230)
238 KOG4603|consensus 33.3 2.5E+02 0.0054 22.4 9.5 38 11-48 79-116 (201)
239 PF13758 Prefoldin_3: Prefoldi 32.8 1.9E+02 0.004 20.7 5.9 71 42-112 12-98 (99)
240 PF11945 WASH_WAHD: WAHD domai 32.8 1.3E+02 0.0029 25.3 5.8 30 89-119 43-72 (297)
241 KOG4302|consensus 32.7 4.4E+02 0.0094 25.0 9.5 99 12-116 161-259 (660)
242 PF14282 FlxA: FlxA-like prote 32.4 1.5E+02 0.0033 20.9 5.3 23 74-96 18-40 (106)
243 PF07851 TMPIT: TMPIT-like pro 32.3 3.3E+02 0.0072 23.5 9.2 37 12-48 5-41 (330)
244 PF13874 Nup54: Nucleoporin co 32.3 2.1E+02 0.0045 21.1 6.3 40 73-112 42-81 (141)
245 PHA01750 hypothetical protein 32.3 1.1E+02 0.0024 20.6 4.1 24 89-112 42-65 (75)
246 PF05064 Nsp1_C: Nsp1-like C-t 32.1 1.1E+02 0.0023 22.0 4.5 42 12-53 58-99 (116)
247 PF15290 Syntaphilin: Golgi-lo 32.1 3.2E+02 0.007 23.3 8.4 40 76-115 118-157 (305)
248 TIGR00634 recN DNA repair prot 32.1 3.4E+02 0.0075 24.5 8.7 30 11-40 266-295 (563)
249 PF03357 Snf7: Snf7; InterPro 32.0 1E+02 0.0022 22.5 4.5 37 75-111 1-37 (171)
250 PF05524 PEP-utilisers_N: PEP- 31.9 79 0.0017 22.3 3.8 28 85-112 31-58 (123)
251 PF05103 DivIVA: DivIVA protei 31.8 31 0.00067 24.5 1.6 47 70-117 20-66 (131)
252 KOG4674|consensus 31.8 2.5E+02 0.0054 29.8 8.2 96 13-112 1245-1344(1822)
253 KOG3341|consensus 31.7 1.4E+02 0.003 24.6 5.4 44 76-119 16-59 (249)
254 COG2919 Septum formation initi 31.6 2E+02 0.0043 20.7 6.2 22 46-67 93-114 (117)
255 PRK12765 flagellar capping pro 31.5 87 0.0019 28.9 4.8 37 79-115 529-565 (595)
256 PF09403 FadA: Adhesion protei 31.4 2.2E+02 0.0047 21.1 10.2 7 56-62 82-88 (126)
257 PRK06231 F0F1 ATP synthase sub 31.3 1.8E+02 0.0039 22.9 6.0 37 76-112 73-109 (205)
258 PRK10803 tol-pal system protei 31.1 1.5E+02 0.0033 24.2 5.7 34 77-110 56-89 (263)
259 KOG3759|consensus 31.1 2.7E+02 0.0059 25.6 7.6 44 69-112 207-250 (621)
260 PF10779 XhlA: Haemolysin XhlA 31.1 1.5E+02 0.0033 19.2 6.3 31 80-110 18-48 (71)
261 cd09234 V_HD-PTP_like Protein- 31.0 2.9E+02 0.0062 23.3 7.6 102 8-112 55-161 (337)
262 PRK14158 heat shock protein Gr 30.8 2E+02 0.0043 22.8 6.1 40 73-112 38-77 (194)
263 PRK13182 racA polar chromosome 30.6 1.6E+02 0.0035 22.9 5.5 20 90-109 126-145 (175)
264 TIGR02680 conserved hypothetic 30.4 4.9E+02 0.011 26.5 10.0 34 79-112 287-320 (1353)
265 PRK08724 fliD flagellar cappin 30.4 1.1E+02 0.0024 28.8 5.3 36 80-115 615-650 (673)
266 PRK05759 F0F1 ATP synthase sub 30.3 2.1E+02 0.0046 20.8 6.0 37 76-112 29-65 (156)
267 PF15066 CAGE1: Cancer-associa 29.8 4.4E+02 0.0095 24.1 8.8 79 29-112 342-434 (527)
268 COG4942 Membrane-bound metallo 29.7 4.1E+02 0.0089 23.7 9.3 101 12-112 53-191 (420)
269 PF08826 DMPK_coil: DMPK coile 29.5 1.6E+02 0.0035 19.1 6.2 35 76-110 26-60 (61)
270 PF04102 SlyX: SlyX; InterPro 29.3 1.6E+02 0.0036 19.1 6.1 43 74-117 10-52 (69)
271 PRK14143 heat shock protein Gr 29.3 2E+02 0.0044 23.5 6.1 40 73-112 65-104 (238)
272 PRK07737 fliD flagellar cappin 29.3 95 0.0021 27.9 4.6 31 82-112 441-471 (501)
273 PF08172 CASP_C: CASP C termin 29.0 1.6E+02 0.0035 24.1 5.5 33 79-111 97-129 (248)
274 KOG0161|consensus 29.0 3.6E+02 0.0079 28.8 9.0 58 10-67 991-1050(1930)
275 PF10805 DUF2730: Protein of u 28.9 1.9E+02 0.0042 20.3 5.3 12 81-92 48-59 (106)
276 TIGR01144 ATP_synt_b ATP synth 28.8 2.3E+02 0.0049 20.5 6.0 37 76-112 20-56 (147)
277 PF08912 Rho_Binding: Rho Bind 28.8 1.8E+02 0.004 19.4 5.4 31 81-111 2-32 (69)
278 cd04787 HTH_HMRTR_unk Helix-Tu 28.7 2.3E+02 0.0049 20.5 6.1 66 29-109 48-113 (133)
279 PF05791 Bacillus_HBL: Bacillu 28.6 2.7E+02 0.006 21.4 7.8 38 75-112 142-179 (184)
280 PF08702 Fib_alpha: Fibrinogen 28.6 2.6E+02 0.0055 21.0 10.0 99 14-117 24-132 (146)
281 COG1842 PspA Phage shock prote 28.5 2.3E+02 0.005 22.9 6.3 45 70-114 94-138 (225)
282 PRK13455 F0F1 ATP synthase sub 28.5 2.2E+02 0.0047 21.7 6.0 37 76-112 52-88 (184)
283 PRK10698 phage shock protein P 28.4 3.1E+02 0.0067 21.9 12.0 96 12-112 32-136 (222)
284 PRK15365 type III secretion sy 28.2 2.3E+02 0.005 20.4 6.5 13 69-81 67-79 (107)
285 KOG0980|consensus 28.0 6E+02 0.013 25.1 11.6 40 72-111 463-502 (980)
286 COG0419 SbcC ATPase involved i 27.9 5.5E+02 0.012 24.7 10.7 6 83-88 594-599 (908)
287 PRK13461 F0F1 ATP synthase sub 27.9 2.4E+02 0.0053 20.8 6.0 37 76-112 30-66 (159)
288 PF07106 TBPIP: Tat binding pr 27.8 2.1E+02 0.0046 21.4 5.7 10 45-54 96-105 (169)
289 PF05565 Sipho_Gp157: Siphovir 27.5 1.1E+02 0.0024 23.1 4.1 42 75-116 47-88 (162)
290 cd04786 HTH_MerR-like_sg7 Heli 27.4 2.5E+02 0.0054 20.5 6.0 63 31-109 50-112 (131)
291 PRK14148 heat shock protein Gr 27.3 2.6E+02 0.0056 22.2 6.3 38 75-112 40-77 (195)
292 PF11336 DUF3138: Protein of u 27.2 1.7E+02 0.0036 26.6 5.5 24 89-112 25-48 (514)
293 PF12128 DUF3584: Protein of u 27.2 6.4E+02 0.014 25.2 10.5 82 31-116 312-393 (1201)
294 PRK14475 F0F1 ATP synthase sub 27.2 2.5E+02 0.0053 21.1 6.0 39 74-112 33-71 (167)
295 PF07334 IFP_35_N: Interferon- 27.1 2.1E+02 0.0045 19.5 5.2 38 21-58 3-40 (76)
296 PF10498 IFT57: Intra-flagella 27.0 4.2E+02 0.009 23.0 10.3 42 71-112 248-289 (359)
297 PRK14163 heat shock protein Gr 26.9 2.1E+02 0.0045 23.2 5.7 44 69-112 34-77 (214)
298 PRK15352 type III secretion sy 26.9 2.5E+02 0.0053 20.3 5.7 32 13-44 76-107 (125)
299 PRK14151 heat shock protein Gr 26.8 2E+02 0.0043 22.4 5.5 38 75-112 20-57 (176)
300 PRK09173 F0F1 ATP synthase sub 26.8 2.5E+02 0.0055 20.7 5.9 37 76-112 27-63 (159)
301 PF02403 Seryl_tRNA_N: Seryl-t 26.7 1.6E+02 0.0034 20.3 4.5 16 68-83 6-21 (108)
302 COG1675 TFA1 Transcription ini 26.6 60 0.0013 25.5 2.5 33 64-96 138-170 (176)
303 KOG0978|consensus 26.6 5.7E+02 0.012 24.4 9.3 52 17-70 495-546 (698)
304 PRK13453 F0F1 ATP synthase sub 26.6 2.5E+02 0.0055 21.2 6.0 37 76-112 43-79 (173)
305 KOG4360|consensus 26.6 5.3E+02 0.011 24.0 12.3 83 14-119 222-304 (596)
306 PF05531 NPV_P10: Nucleopolyhe 26.5 1.6E+02 0.0035 20.0 4.3 27 86-112 39-65 (75)
307 PHA02557 22 prohead core prote 26.4 2.5E+02 0.0053 23.7 6.2 47 65-111 131-177 (271)
308 KOG1003|consensus 26.3 3.5E+02 0.0076 21.8 7.1 25 24-48 52-76 (205)
309 PRK14472 F0F1 ATP synthase sub 26.3 2.6E+02 0.0057 21.1 6.0 37 76-112 43-79 (175)
310 PRK13460 F0F1 ATP synthase sub 26.2 2.6E+02 0.0057 21.1 6.0 37 76-112 41-77 (173)
311 TIGR03007 pepcterm_ChnLen poly 26.2 4.4E+02 0.0095 23.0 11.1 15 16-30 252-266 (498)
312 PF14182 YgaB: YgaB-like prote 26.2 2.2E+02 0.0048 19.6 8.7 72 20-116 2-73 (79)
313 PTZ00464 SNF-7-like protein; P 26.1 3.4E+02 0.0074 21.7 12.2 82 8-106 11-92 (211)
314 COG1792 MreC Cell shape-determ 25.9 3.3E+02 0.0071 22.6 6.9 44 13-56 68-111 (284)
315 PF14591 AF0941-like: AF0941-l 25.9 2E+02 0.0044 21.5 5.0 60 24-85 60-122 (127)
316 PF09932 DUF2164: Uncharacteri 25.8 60 0.0013 22.0 2.1 38 59-96 38-75 (76)
317 PF04977 DivIC: Septum formati 25.8 1.8E+02 0.004 18.4 5.8 35 17-51 16-50 (80)
318 cd09235 V_Alix Middle V-domain 25.7 4.1E+02 0.0088 22.4 8.6 105 7-112 52-161 (339)
319 PF13600 DUF4140: N-terminal d 25.7 2.2E+02 0.0048 19.4 5.2 29 19-47 71-99 (104)
320 KOG4571|consensus 25.7 2.5E+02 0.0055 23.9 6.2 45 71-116 244-288 (294)
321 PF06305 DUF1049: Protein of u 25.6 84 0.0018 19.7 2.7 21 88-108 47-67 (68)
322 cd04770 HTH_HMRTR Helix-Turn-H 25.3 2.3E+02 0.005 19.9 5.2 56 32-102 51-106 (123)
323 PF12329 TMF_DNA_bd: TATA elem 25.3 2.1E+02 0.0046 19.0 6.1 35 78-112 36-70 (74)
324 PF14193 DUF4315: Domain of un 25.0 1.9E+02 0.0042 19.9 4.5 36 19-54 2-37 (83)
325 COG4080 SpoU rRNA Methylase fa 25.0 24 0.00053 26.9 0.0 31 58-88 50-80 (147)
326 PF10458 Val_tRNA-synt_C: Valy 24.7 2E+02 0.0042 18.4 7.3 37 65-101 29-65 (66)
327 KOG4674|consensus 24.6 7.2E+02 0.016 26.6 10.0 99 13-112 54-166 (1822)
328 TIGR02894 DNA_bind_RsfA transc 24.5 3.1E+02 0.0067 21.3 6.0 29 84-112 113-141 (161)
329 PHA02096 hypothetical protein 24.5 98 0.0021 21.7 3.0 36 57-92 19-54 (103)
330 PF07361 Cytochrom_B562: Cytoc 24.5 1.1E+02 0.0024 21.5 3.4 46 8-53 43-93 (103)
331 PRK07353 F0F1 ATP synthase sub 24.3 2.7E+02 0.0059 19.9 6.0 37 76-112 30-66 (140)
332 cd04785 HTH_CadR-PbrR-like Hel 24.3 2.7E+02 0.0058 19.9 5.5 32 72-103 76-107 (126)
333 PF04816 DUF633: Family of unk 23.9 92 0.002 24.6 3.1 50 61-112 151-200 (205)
334 KOG4643|consensus 23.9 5.4E+02 0.012 26.0 8.6 30 25-54 212-241 (1195)
335 PF09278 MerR-DNA-bind: MerR, 23.9 1.8E+02 0.004 17.8 5.0 55 32-101 8-62 (65)
336 PF05529 Bap31: B-cell recepto 23.9 2.6E+02 0.0056 21.4 5.6 33 80-112 152-184 (192)
337 PF12325 TMF_TATA_bd: TATA ele 23.8 3E+02 0.0064 20.1 9.8 90 15-116 27-116 (120)
338 cd09238 V_Alix_like_1 Protein- 23.8 4.5E+02 0.0097 22.2 10.2 100 15-119 6-123 (339)
339 PF03961 DUF342: Protein of un 23.6 4.1E+02 0.009 23.2 7.4 31 82-112 375-405 (451)
340 KOG3129|consensus 23.6 1.4E+02 0.003 24.5 4.1 30 22-51 18-47 (231)
341 COG1777 Predicted transcriptio 23.6 4.1E+02 0.0088 21.7 6.9 49 9-57 116-165 (217)
342 cd01107 HTH_BmrR Helix-Turn-He 23.6 2.6E+02 0.0056 19.4 5.3 32 74-105 74-105 (108)
343 PF03980 Nnf1: Nnf1 ; InterPr 23.5 2.6E+02 0.0056 19.4 8.7 33 77-109 75-107 (109)
344 PRK14139 heat shock protein Gr 23.4 3E+02 0.0064 21.7 5.9 37 76-112 33-69 (185)
345 PF05565 Sipho_Gp157: Siphovir 23.3 3.3E+02 0.0072 20.5 6.2 71 44-115 24-94 (162)
346 PHA03155 hypothetical protein; 23.3 1.8E+02 0.0038 21.4 4.2 91 1-118 1-96 (115)
347 PF10805 DUF2730: Protein of u 23.1 2.8E+02 0.006 19.5 5.5 38 75-112 35-74 (106)
348 KOG3501|consensus 23.1 2E+02 0.0043 21.0 4.4 75 27-101 26-107 (114)
349 TIGR01834 PHA_synth_III_E poly 23.1 1.2E+02 0.0027 26.0 3.9 12 18-29 186-197 (320)
350 PHA03011 hypothetical protein; 23.1 2.5E+02 0.0054 20.5 4.9 19 82-100 99-117 (120)
351 cd07591 BAR_Rvs161p The Bin/Am 23.1 2.7E+02 0.0058 22.3 5.7 44 68-111 4-47 (224)
352 PF15188 CCDC-167: Coiled-coil 23.0 1.9E+02 0.0041 20.1 4.2 23 30-52 3-25 (85)
353 PF07111 HCR: Alpha helical co 23.0 6.8E+02 0.015 24.0 10.7 30 6-35 466-495 (739)
354 PF03234 CDC37_N: Cdc37 N term 22.9 3.7E+02 0.0081 21.0 9.7 44 11-54 32-75 (177)
355 PRK14162 heat shock protein Gr 22.9 3E+02 0.0065 21.8 5.9 41 72-112 36-76 (194)
356 PRK14154 heat shock protein Gr 22.8 2.7E+02 0.0058 22.4 5.6 34 79-112 56-89 (208)
357 PF07303 Occludin_ELL: Occludi 22.7 2.8E+02 0.0061 19.5 5.2 78 13-100 17-98 (101)
358 PF13942 Lipoprotein_20: YfhG 22.7 2.7E+02 0.0058 22.0 5.4 43 13-55 114-160 (179)
359 PF06518 DUF1104: Protein of u 22.7 1.1E+02 0.0023 21.6 2.9 41 57-98 8-49 (93)
360 TIGR01242 26Sp45 26S proteasom 22.7 2.5E+02 0.0054 23.6 5.7 39 79-118 3-41 (364)
361 TIGR01837 PHA_granule_1 poly(h 22.7 1.3E+02 0.0027 21.8 3.4 15 84-98 98-112 (118)
362 TIGR00570 cdk7 CDK-activating 22.6 3.3E+02 0.0072 23.3 6.4 64 22-90 73-136 (309)
363 KOG1029|consensus 22.6 7.6E+02 0.016 24.4 10.6 87 14-108 419-505 (1118)
364 PF08614 ATG16: Autophagy prot 22.4 3.7E+02 0.0079 20.7 11.7 39 74-112 136-174 (194)
365 cd01108 HTH_CueR Helix-Turn-He 22.2 3E+02 0.0065 19.6 5.5 56 33-103 52-107 (127)
366 TIGR00373 conserved hypothetic 22.2 60 0.0013 24.6 1.7 25 64-88 134-158 (158)
367 KOG0994|consensus 22.1 5.3E+02 0.011 26.7 8.3 35 10-44 1224-1258(1758)
368 PRK14471 F0F1 ATP synthase sub 22.1 3.4E+02 0.0073 20.1 6.0 37 76-112 33-69 (164)
369 PRK08475 F0F1 ATP synthase sub 21.9 3.6E+02 0.0077 20.4 6.0 37 76-112 47-83 (167)
370 PF03670 UPF0184: Uncharacteri 21.9 2.8E+02 0.0061 19.2 5.4 36 77-112 28-63 (83)
371 PRK11546 zraP zinc resistance 21.9 2.1E+02 0.0045 21.8 4.5 22 6-27 84-105 (143)
372 COG5570 Uncharacterized small 21.8 1.4E+02 0.003 19.2 3.0 24 74-97 32-55 (57)
373 PF08287 DASH_Spc19: Spc19; I 21.8 3.3E+02 0.0071 20.7 5.7 40 73-112 59-98 (153)
374 PF06133 DUF964: Protein of un 21.7 1.4E+02 0.0031 20.3 3.5 21 11-31 33-53 (108)
375 PRK10361 DNA recombination pro 21.5 6.2E+02 0.013 23.0 12.5 26 84-109 135-160 (475)
376 PF04568 IATP: Mitochondrial A 21.5 3.1E+02 0.0067 19.5 5.4 31 82-112 69-99 (100)
377 PRK11281 hypothetical protein; 21.4 8.5E+02 0.018 24.6 11.7 37 17-53 72-108 (1113)
378 PF04880 NUDE_C: NUDE protein, 21.3 2.5E+02 0.0054 21.8 5.0 37 21-57 3-39 (166)
379 PF02388 FemAB: FemAB family; 21.3 5.4E+02 0.012 22.2 8.9 21 81-101 272-292 (406)
380 PRK14161 heat shock protein Gr 21.2 3.5E+02 0.0075 21.1 5.8 34 79-112 23-56 (178)
381 PF07195 FliD_C: Flagellar hoo 21.1 3.8E+02 0.0082 21.2 6.2 35 74-108 192-226 (239)
382 TIGR02051 MerR Hg(II)-responsi 21.1 3.2E+02 0.0068 19.5 5.5 56 30-102 48-103 (124)
383 PF03962 Mnd1: Mnd1 family; I 21.1 3.3E+02 0.0071 21.2 5.7 36 73-108 60-95 (188)
384 PRK10227 DNA-binding transcrip 21.0 3.2E+02 0.007 19.9 5.4 57 32-103 51-107 (135)
385 COG4024 Uncharacterized protei 20.9 1.8E+02 0.0038 23.4 4.1 84 13-97 66-163 (218)
386 COG1163 DRG Predicted GTPase [ 20.8 2.1E+02 0.0046 25.0 4.9 34 79-112 3-42 (365)
387 PRK14473 F0F1 ATP synthase sub 20.6 3.6E+02 0.0079 20.0 6.0 37 76-112 33-69 (164)
388 COG3352 FlaC Putative archaeal 20.5 3.6E+02 0.0077 20.9 5.6 35 78-112 75-109 (157)
389 PF11365 DUF3166: Protein of u 20.4 3.2E+02 0.007 19.3 7.1 35 78-112 4-38 (96)
390 COG4768 Uncharacterized protei 20.3 3.1E+02 0.0067 20.8 5.1 51 67-117 23-73 (139)
391 KOG0972|consensus 20.3 3.3E+02 0.0072 23.6 5.9 51 41-91 204-261 (384)
392 PF04012 PspA_IM30: PspA/IM30 20.3 4.2E+02 0.009 20.5 6.4 47 72-118 34-80 (221)
393 PRK13676 hypothetical protein; 20.2 3E+02 0.0066 19.2 5.0 22 10-31 35-56 (114)
394 PF11853 DUF3373: Protein of u 20.2 1E+02 0.0022 28.0 3.0 26 83-108 32-57 (489)
395 PF04375 HemX: HemX; InterPro 20.2 5.6E+02 0.012 22.0 9.7 19 24-42 59-77 (372)
396 TIGR02209 ftsL_broad cell divi 20.1 2.4E+02 0.0052 18.3 4.2 23 21-43 27-49 (85)
397 PF00261 Tropomyosin: Tropomyo 20.0 4.5E+02 0.0098 20.9 9.5 35 18-52 78-112 (237)
No 1
>KOG4098|consensus
Probab=100.00 E-value=1.9e-32 Score=202.74 Aligned_cols=116 Identities=46% Similarity=0.792 Sum_probs=112.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..|++.+.++++|+.|+++++.|.+++..|+++++||.+|+++|+.++|+|+||||||||||++|+.+++|.|..++++|
T Consensus 12 ~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i 91 (140)
T KOG4098|consen 12 KEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENI 91 (140)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcCCC
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSA 123 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~~~ 123 (144)
+..++.|..++..+.+++++|+++|||++.++.+.+
T Consensus 92 ~~~i~~l~~qL~~k~kElnkfk~~hkIrv~~e~~~~ 127 (140)
T KOG4098|consen 92 EKVIKKLTDQLVQKGKELNKFKKDHKIRVVKEKESA 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcceeeecchhch
Confidence 999999999999999999999999999999988754
No 2
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.94 E-value=3.1e-26 Score=165.61 Aligned_cols=105 Identities=20% Similarity=0.360 Sum_probs=103.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le 88 (144)
.||.+++++.+||++|++++.+.++++.|+.+++||++|+++|+.|++|++|||+||||||++|++||+++|++|+++|+
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKFD 113 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~~ 113 (144)
..|+++++++..+++++.+++..+.
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999984
No 3
>KOG3478|consensus
Probab=99.94 E-value=5.2e-26 Score=164.09 Aligned_cols=113 Identities=28% Similarity=0.413 Sum_probs=109.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~ 89 (144)
....++.++.||+||.++......|+.|++++.||+.|+++|+.|++|.+|||++|||||+++.+||..+|.+|++||+.
T Consensus 4 ~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~ 83 (120)
T KOG3478|consen 4 QKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISK 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcCCC
Q psy13667 90 LINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSA 123 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~~~ 123 (144)
+|++++.++.++++++.+.+..+ |++|+..+++
T Consensus 84 Eikr~e~~i~d~q~e~~k~R~~v-~k~Q~~~q~~ 116 (120)
T KOG3478|consen 84 EIKRLENQIRDSQEEFEKQREAV-IKLQQAAQPA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence 99999999999999999999999 9999987754
No 4
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.5e-24 Score=155.72 Aligned_cols=110 Identities=20% Similarity=0.331 Sum_probs=105.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..||..++.+++||+||++++.+..++++++++++|++.|+++|+.+++|+.|||.||++||+.++++|+..|++|+|+|
T Consensus 3 ~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L 82 (119)
T COG1382 3 QLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETL 82 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+.++++|+++.+.+++++.+++..+ ++..+
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i-~~~l~ 112 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEI-QKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 9999999999999999999999999 44433
No 5
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.91 E-value=1.5e-23 Score=154.37 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=106.0
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..||.+++.+.+||.+|++++.+.++++.|+.+++|+++|+++|+.|++|++|||+||||||++|++||+.+|++|+++|
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+.+|++|+++...+++++.+++..+.--+++
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999443333
No 6
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.91 E-value=1.2e-23 Score=150.72 Aligned_cols=104 Identities=23% Similarity=0.354 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
+++++.+||.|+++++.+.++++.|+++++||+.|+++|+.+++|++||++||+|||++|+++|.+.|++|+++|+.+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 93 SLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+++++++.+++++.+++.++ ..++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l-~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKI-QQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 99999999999999999998 4443
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.85 E-value=3e-20 Score=131.11 Aligned_cols=104 Identities=27% Similarity=0.471 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
|+++.+|+.++.++..+.+++..++.++++|+.|+++|+.+++|++||++||++||+.+++++.+.|+++++.++.+|+.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 94 LNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 94 l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
|++++..+.+++.+++..+...+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999965554
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.60 E-value=3.1e-14 Score=103.56 Aligned_cols=99 Identities=29% Similarity=0.444 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------------CCcceeeeec-ceeh
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD-----------------------GDRRCFRLIG-GVLC 69 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~d~~~yklvG-~VLV 69 (144)
+++...|++|+++++.+.+++..+..++.|++.++++|+.++ ++.+||..|| |++|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 678899999999999999999999999999999999999997 7889999999 9999
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.|.++|...|++|+++|+..++.+++.+..+..++..++..+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.57 E-value=7.3e-14 Score=104.14 Aligned_cols=109 Identities=27% Similarity=0.380 Sum_probs=99.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----------Ccceee-------------ee
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG-----------DRRCFR-------------LI 64 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------d~~~yk-------------lv 64 (144)
..++++.+...|++|+++++.|.+++..|...+.|+..++++|+.+++ ++.||. ++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 568899999999999999999999999999999999999999999974 444555 78
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+||+|+.|++||++.|++|++.|+..++.+.+.+..+.++++.+...+ .+++.
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l-~~l~~ 136 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL-QQLQQ 136 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 899999999999999999999999999999999999999999999998 55443
No 10
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.43 E-value=3.9e-12 Score=93.40 Aligned_cols=99 Identities=25% Similarity=0.359 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC------------------------Ccceeeeecceeh
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG------------------------DRRCFRLIGGVLC 69 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------d~~~yklvG~VLV 69 (144)
+.+...+++|+.+++.+.+++..|...+.|+..++++|+.+.+ ++.|+.+++|+.|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 5788899999999999999999999999999999999999976 8899999999999
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+.++|++.+++|++.|+..++.+.+.+..+.++++.+...+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877
No 11
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.39 E-value=1.3e-11 Score=90.21 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeee-----------------------cceehh
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLI-----------------------GGVLCE 70 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklv-----------------------G~VLVe 70 (144)
+++...|++|+++++.|.+++..|...+.+++.++++|+.+++++.|..+| +|++|+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 678899999999999999999999999999999999999997654455555 999999
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|.++|++.+++|++.|+..++.+.+.+..+.+++..+...+
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876
No 12
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.25 E-value=2.8e-10 Score=86.34 Aligned_cols=108 Identities=16% Similarity=0.265 Sum_probs=101.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------CCCcceeeeecceeh
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL---------------------DGDRRCFRLIGGVLC 69 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------~~d~~~yklvG~VLV 69 (144)
.++++++..|+.|+++++.|.+.++.|..-.+++...+++|+.+ ++|+.+.-++.|+.|
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 46899999999999999999999999999999999999999888 378899999999999
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
++|.++|+..+++|+++|+..++.+...++++...+++++..+..++++
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877666655
No 13
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.1e-10 Score=86.18 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=100.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------------------CCcceeeeec
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD------------------------GDRRCFRLIG 65 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~------------------------~d~~~yklvG 65 (144)
.++++++.++||.|+.+++.|.+++..|...++|+..++++|+.+. .|+.+.-++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 5679999999999999999999999999999999999999998873 4788999999
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
|+-|++|.++|+..|++|++.|+..++.+...+.++...+..+.... .+++.
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~-q~~~q 136 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA-QQLQQ 136 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999888 44443
No 14
>PRK01203 prefoldin subunit alpha; Provisional
Probab=98.75 E-value=3.7e-07 Score=68.25 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------------CCCcceeeeecceehh
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----------------------DGDRRCFRLIGGVLCE 70 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----------------------~~d~~~yklvG~VLVe 70 (144)
+++.++|+.++++.+.|.++++.|....++....++.|+.+ ++|..+.-++.|+.|+
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence 67889999999999999999999999999999999999876 3788899999999999
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+|.++++..|+++++.|+..+.....++..++..+..+.
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888776
No 15
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=98.73 E-value=7.5e-08 Score=69.30 Aligned_cols=90 Identities=22% Similarity=0.387 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------CCCcceeeeecceehhccHhhHHH
Q psy13667 23 LRAEQRQIATKLSELEQELTEHKIVLDTLKDL------------------------DGDRRCFRLIGGVLCEKTVKEVIP 78 (144)
Q Consensus 23 lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l------------------------~~d~~~yklvG~VLVe~t~~Ea~~ 78 (144)
|+++++.+.+++..|...+.|+..++++|+.+ +++..+..++.|+.|+.|.++|..
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~ 80 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE 80 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence 34566778888888888888888888888766 367788899999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+++|++.++..++.+.+.+..+..++..+...+
T Consensus 81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887
No 16
>KOG1760|consensus
Probab=97.68 E-value=0.0024 Score=47.50 Aligned_cols=102 Identities=18% Similarity=0.311 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD-RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d-~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~ 89 (144)
..-|+.+++|-++-.....+...+.....++.-.+-+.++|..+++| .-|==.||.|.+--..+.+..-|++.++.+.+
T Consensus 16 ~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k 95 (131)
T KOG1760|consen 16 FEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEK 95 (131)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHH
Confidence 44578889999998888888888888888888899999999999988 44555689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 90 LINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|+.++...+.+...|++++.-+
T Consensus 96 ~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 96 EIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998866
No 17
>KOG3048|consensus
Probab=97.60 E-value=0.0063 Score=46.42 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=88.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------CCCcceeeeec
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL------------------------DGDRRCFRLIG 65 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l------------------------~~d~~~yklvG 65 (144)
..+++++.+=-+++.++++-+...++.|..-..-+.-.++.|+.+ ++++.+.-++-
T Consensus 12 kLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGT 91 (153)
T KOG3048|consen 12 KLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGT 91 (153)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceeccccceeEeccC
Confidence 355677777778888888888888888877777777777777665 36778888999
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
|..||.|.++++....+++++|...++.+..-+.++..-......-+..+++
T Consensus 92 GYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv~ 143 (153)
T KOG3048|consen 92 GYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKVQ 143 (153)
T ss_pred ceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777777666655554
No 18
>KOG3501|consensus
Probab=96.88 E-value=0.019 Score=41.67 Aligned_cols=100 Identities=11% Similarity=0.175 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
+.++..+-..-|+++..+.-|+..+.-.+.-......+|..+-+|..+|+.+|...+..++.-+...++......+..|+
T Consensus 5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie 84 (114)
T KOG3501|consen 5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Confidence 34555666677788888888888888888888899999999999999999999999999998888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13667 93 SLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~ 112 (144)
.|.+.-.=+++...+....+
T Consensus 85 aLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 85 ALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666665555
No 19
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.87 E-value=0.0062 Score=45.16 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----cc------e-eeeecceehhccHh---hHHH---
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD----RR------C-FRLIGGVLCEKTVK---EVIP--- 78 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----~~------~-yklvG~VLVe~t~~---Ea~~--- 78 (144)
.-..+++|+.+++.+...++.|.+++...+..+.++..+-.. .. + |-+..++.|+-++. .++-
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 346789999999999999999999999999999998776422 22 1 22345677766663 3332
Q ss_pred -------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 79 -------TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 79 -------~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
++.+-+++|+..++.++++++.+.+.+..+++.+ -.+..
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~ 129 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI-AQLAQ 129 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 8999999999999999999999999999999998 55544
No 20
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=96.24 E-value=0.024 Score=41.10 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeee----ecceeh--------hccHhhHH-----------
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRL----IGGVLC--------EKTVKEVI----------- 77 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~ykl----vG~VLV--------e~t~~Ea~----------- 77 (144)
+++..+++.+.+++..|.+++.+....+.+++..-+ .+-.+ ...+|| +-++.+.-
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~--~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIE--TLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence 688999999999999999999999999999988742 12111 244777 33333333
Q ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 78 --PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 78 --~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.++++-+++++.+++.++++++.+++.+..++..+ -.+.
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~-~~i~ 120 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRA-QQLE 120 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 78999999999999999999999999999999998 4444
No 21
>KOG3313|consensus
Probab=95.72 E-value=0.22 Score=39.28 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------------CCCcceeeeec
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL---------------------------DGDRRCFRLIG 65 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------------~~d~~~yklvG 65 (144)
+.-+...|++|.----++..++..|...+-+.+.-|+-+..| ++|.+|.=++.
T Consensus 39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGA 118 (187)
T KOG3313|consen 39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGA 118 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecc
Confidence 445556666666666678888888888888888877766555 46788888999
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e 107 (144)
+|++|-+.+||..-|++++....+.++.++.-++=+..++.-
T Consensus 119 nVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTT 160 (187)
T KOG3313|consen 119 NVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTT 160 (187)
T ss_pred eeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcee
Confidence 999999999999999999998888888887777766666553
No 22
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=95.23 E-value=0.082 Score=37.93 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=37.4
Q ss_pred ecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 64 IGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 64 vG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el 105 (144)
+.+-.+.+|.+.++..|..|++|+..-|..|+|++..-+.++
T Consensus 57 G~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 57 GEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335688999999999999999999999999999999877665
No 23
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.12 Score=39.37 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec---ceehh--------ccHhh-----------
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG---GVLCE--------KTVKE----------- 75 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG---~VLVe--------~t~~E----------- 75 (144)
..++++-.+++.+.++++-|.+++...+..+.+|......=.-.+..| .+||+ -.+.+
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 467788889999999999999999999999888877665545555555 35554 33444
Q ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667 76 --VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNK 120 (144)
Q Consensus 76 --a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~ 120 (144)
|..+.++=+++|+.+++.|++.+.+++..+.++-..+ -.+....
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~-~~l~~~~ 131 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRI-EQLEQEA 131 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5678899999999999999999999999999999999 6666543
No 24
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.07 E-value=0.15 Score=36.11 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le 88 (144)
.++.+-.+++.+..+.+.+..++.+...-+.|...+-+. ...+. .||=..---=+..++++-+..++.+++.++
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG---~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG---NVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh---hHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888888888887755211 11221 122222222345667778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13667 89 TLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~ 109 (144)
..++.+.+++.++..++.+++
T Consensus 84 ~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 84 RQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888765
No 25
>PRK09343 prefoldin subunit beta; Provisional
Probab=94.79 E-value=0.26 Score=36.10 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
++.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+.-.--..=.++|=..---=+..++.+=+..++.++..++...+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~ 95 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEK 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666665544221111111111222222233455566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13667 93 SLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~ 112 (144)
.+.+++.+.+..+.++...+
T Consensus 96 ~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 96 KLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666655544
No 26
>PRK11637 AmiB activator; Provisional
Probab=94.14 E-value=1.6 Score=37.88 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
....+++++++++..+...+..+..++++...-++.|+. . + .....-+..++..+..++..|..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~---q--i----------~~~~~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEE---A--I----------SQASRKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--H----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443333332211 0 0 012445566667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 95 NEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 95 ~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
++++..++.++...+..++-++..
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777555543
No 27
>PRK14011 prefoldin subunit alpha; Provisional
Probab=93.88 E-value=0.54 Score=35.67 Aligned_cols=101 Identities=13% Similarity=0.220 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCc----ceeeeecceehhccHhhH-------------
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL----KDLDGDR----RCFRLIGGVLCEKTVKEV------------- 76 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL----~~l~~d~----~~yklvG~VLVe~t~~Ea------------- 76 (144)
.+++++.-.++.+.++++.|..++.-++.+..++ +.|++-. ...=+.+++.|+-++.+.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 4678899999999999999999999999887766 4555442 445566777777777663
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
..++++=++|++.+++.|++....+...++++...+ -.++..
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~-~~l~~~ 124 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEI-TKLRKE 124 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 468899999999999999999999999999999988 666643
No 28
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=93.73 E-value=0.84 Score=31.46 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
.++.+..+|+.+..++..+..++..++.-+.|...+-+.-.-.-.=..||=...--=+.....+-...++..++.++..+
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999988776622222224567666766778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13667 92 NSLNEQLTKKGIEINE 107 (144)
Q Consensus 92 ~~l~kql~~~~~el~e 107 (144)
+.+.+.+.+++..+.+
T Consensus 86 ~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 86 KYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 29
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=93.54 E-value=0.7 Score=33.02 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=18.1
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e 107 (144)
.++.+=+..++.+++.++..++.+.+++.+++..+.+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555544443
No 30
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.78 Score=33.93 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK-DLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~-~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
++++..+++.+-.+.+++..++.+++.-+.|++.+-+-=. .-.-...+|+.==+. +...+++=+..|+.|+..|+...
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~-~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEE-AVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666654432100 001122344442222 33455666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 92 NSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 92 ~~l~kql~~~~~el~e~~~ 110 (144)
+++.+++++++.++.+...
T Consensus 94 ~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 94 EKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666666655433
No 31
>PRK11637 AmiB activator; Provisional
Probab=92.24 E-value=3.8 Score=35.56 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=19.2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..-+..++.+++.++..|..+...+....+.+......+
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554444333
No 32
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.86 E-value=2.4 Score=31.89 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
++..|+...+.+-..+..++.++.++...+++-+.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444555555555555554444433
No 33
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=91.50 E-value=0.47 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=23.1
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+..||+.-|.+.-++|+..|+.++.++.+++++-..+-..+
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999999988866665554
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=91.35 E-value=3.7 Score=38.50 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
.+.+.-..+..++.+++.+...+..+++.+..++..++.++.+=.+.+|+ +-|-=+-.....+.+..+...+..+...+
T Consensus 406 ~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp-~C~r~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (880)
T PRK02224 406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP-ECGQPVEGSPHVETIEEDRERVEELEAEL 484 (880)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCcCCCcchhhhHHHHHHHHHHHHHHH
Confidence 34555667788889999999999999999999999999987533456674 33433344444455555666666665566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 92 NSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 92 ~~l~kql~~~~~el~e~~~ 110 (144)
+.++..++.+..++..+..
T Consensus 485 ~~le~~l~~~~~~~e~l~~ 503 (880)
T PRK02224 485 EDLEEEVEEVEERLERAED 503 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655555555555554433
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=90.70 E-value=6.8 Score=36.98 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ 97 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kq 97 (144)
..+..+...+..+.+.+..+...+.+...++++|. . ..+|=.-+.+.= +.-..+.+.....+++.++.+++.+++.
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~--~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-G--QSVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--CCCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555554444 2 345666666655 6667777888888888888888888777
Q ss_pred HHHHHHHHHHHHHHh
Q psy13667 98 LTKKGIEINEYKDKF 112 (144)
Q Consensus 98 l~~~~~el~e~~~k~ 112 (144)
+..+.+++..+....
T Consensus 492 ~~~l~~~~~~~~~~~ 506 (895)
T PRK01156 492 VKDIDEKIVDLKKRK 506 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666554444
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=89.94 E-value=8.6 Score=35.95 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
.+...+..+...+..+...+.+.+..++.|....|.+.+ -|.=|-+.-..++.......++.|+.++..+...+..+
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l 478 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666677666654443322 44445555566666777777777777777777777766
Q ss_pred HHHHHHH
Q psy13667 102 GIEINEY 108 (144)
Q Consensus 102 ~~el~e~ 108 (144)
.+++..+
T Consensus 479 ~~~~~~~ 485 (880)
T PRK03918 479 RKELREL 485 (880)
T ss_pred HHHHHHH
Confidence 6666554
No 37
>PRK01203 prefoldin subunit alpha; Provisional
Probab=89.71 E-value=2.9 Score=31.33 Aligned_cols=94 Identities=12% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCc------ceeeeecceehhccHhhHH-------------H
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKD----LDGDR------RCFRLIGGVLCEKTVKEVI-------------P 78 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~d~------~~yklvG~VLVe~t~~Ea~-------------~ 78 (144)
.+-.+++-+.++++.|.++++-.+.+..++.. |..-. ...=+.|++.|+-++.+.. .
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 46789999999999999999999888877643 33321 2344566666666665543 5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
++++++++|+..++.|++-+..+...+..+...++.-
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998543
No 38
>KOG3047|consensus
Probab=89.48 E-value=7.7 Score=29.44 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------CCCcceeeeecceehhccHhhHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----------DGDRRCFRLIGGVLCEKTVKEVI 77 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----------~~d~~~yklvG~VLVe~t~~Ea~ 77 (144)
..|.+.....+|..+|.|+....+-+...+--+++.-.-++-=..| +..+.+..+..++.++-+..||+
T Consensus 28 ih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAi 107 (157)
T KOG3047|consen 28 IHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAI 107 (157)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHH
Confidence 4456666677777777777666555555444443322222211122 34567788999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.......+.|..-.++|.+.-.++...+--+-.-+
T Consensus 108 Kf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl 142 (157)
T KOG3047|consen 108 KFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGL 142 (157)
T ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999998888888877766666555555544
No 39
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=87.80 E-value=9.5 Score=29.43 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHH
Q psy13667 15 EVYNGFQNLRAEQR--------QIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQ 86 (144)
Q Consensus 15 ~~~~~~q~lq~q~q--------~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~ 86 (144)
..+..|+....+++ .+..+++.++..-.......++|+.+.+- ..-.+..|.++++.
T Consensus 31 sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP---------------~RkEv~~vRkkID~ 95 (159)
T PF04949_consen 31 SALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADP---------------MRKEVEMVRKKIDS 95 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc---------------hHHHHHHHHHHHHH
Confidence 34455555555443 67777888888777777777888754321 12456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 87 LNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 87 le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
++.+|+.+......+++++.+|...||-+
T Consensus 96 vNreLkpl~~~cqKKEkEykealea~nEk 124 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEAFNEK 124 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988544
No 40
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=87.25 E-value=8.5 Score=27.27 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hcccCCCcceeeeecc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT--------------------------LKDLDGDRRCFRLIGG 66 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee--------------------------L~~l~~d~~~yklvG~ 66 (144)
.+.+..+++.+++++..+...+.+++.-+.+.+.+.+. +-.+..+--|-+-+..
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e 87 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence 34455555566666666666666666555555555421 1112223222222222
Q ss_pred eehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 67 VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 67 VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
.....++-+..|+++++.++..+..+.+++..+...++..
T Consensus 88 --A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 88 --AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456666667777777777777777777777776666553
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.87 E-value=11 Score=35.51 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=37.3
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.|+-..+..|+..|+.++++|...++.+++.+..+..+.
T Consensus 535 ~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 535 TRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588889999999999999999999999999999999877
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=85.93 E-value=7.5 Score=36.35 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=9.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
..+.+++..++..+..+.+.+..+
T Consensus 310 ~~l~~~~~~l~~~~~~l~~~l~~~ 333 (880)
T PRK03918 310 REIEKRLSRLEEEINGIEERIKEL 333 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.67 E-value=8 Score=25.08 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcccCCCcceeeee
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEH--------KIVLDTLKDLDGDRRCFRLI 64 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~--------~~VleeL~~l~~d~~~yklv 64 (144)
.+-.+++.++.++..+......|..++... +.+-+.|.-..|+..+|+++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~~ 78 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKIP 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeCC
Confidence 344445555555555555555555555544 23344555567888888764
No 44
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.71 E-value=8.2 Score=25.39 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.++-+..|+.++.|.+..|+.|+..+-.-+.++..++..+ -.+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l-~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL-RLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3566788999999999999999999999999999998888 44443
No 45
>PRK00736 hypothetical protein; Provisional
Probab=82.61 E-value=8.2 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=35.1
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++-+..|+.|+.|.+..|+.|++.+..-++.+..++..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999998888877
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.33 E-value=14 Score=32.60 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
+..+......++.++..+...+..++....+.......+.
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~ 340 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLL 340 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555544444444444333333
No 47
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=82.19 E-value=16 Score=26.23 Aligned_cols=92 Identities=24% Similarity=0.340 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccee-----------eeecceehhccHhh-------------H
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCF-----------RLIGGVLCEKTVKE-------------V 76 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~y-----------klvG~VLVe~t~~E-------------a 76 (144)
++++..++.+...+..|..++......+.++..+-+.=.-+ -+.+++.|+-++.+ +
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 46778888888888888888888888888877664331111 12334444444433 2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...+.+-+++++.+++.+++.++.+++.+..++..+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888888888888887
No 48
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=81.61 E-value=15 Score=30.40 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccee
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCF 61 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~y 61 (144)
.....|..|++.++.+...+..|+..+.|.+.=|+.+..-..+..-+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~ 223 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD 223 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 56788999999999999999999999999999999998876665555
No 49
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=81.55 E-value=7.6 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG 65 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG 65 (144)
..|+++...|..+++.|+...+-++.|.-=-+.-.-..+||+..|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~g 46 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTAG 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccCC
Confidence 468899999999999999999999999644444444567887654
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.06 E-value=21 Score=26.79 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
+|..|+..|+.+++..++.+.....++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444
No 51
>PRK00295 hypothetical protein; Provisional
Probab=80.59 E-value=11 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=34.6
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++-+..|+.++.|.+..|+.|++.+-.-++++..++..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999999999999999999998888888777
No 52
>PHA01750 hypothetical protein
Probab=80.28 E-value=10 Score=25.47 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=33.4
Q ss_pred hhccHhhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEV-IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea-~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+++...+| ...|...+++|..+|..++....+++.++.++..+.
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34554444 456778888999888888888888888888887776
No 53
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.81 E-value=32 Score=28.22 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccee----ee------ecceeh------hccHhhHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCF----RL------IGGVLC------EKTVKEVI 77 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~y----kl------vG~VLV------e~t~~Ea~ 77 (144)
+++..++..+..++.....-+..||.+|.-.......-....++..+- +. .|...- -..-...+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 344555566666666666666666666655554322222222221111 00 111111 13556788
Q ss_pred HHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 78 PTLTTNRDQLNTLIN-------SLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 78 ~~L~~r~e~le~~i~-------~l~kql~~~~~el~e~~~k~~i~ 115 (144)
|.|....+-...+.. +....+..++.+++.++... ++
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN-~k 125 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN-VK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 888776665555444 45555555555566665554 44
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.72 E-value=9.4 Score=29.72 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
....-..+-.++.++..+...++++..++.....-+..++.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp -----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccchhhh
Confidence 34445555566667777777777766666666665555544
No 55
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.62 E-value=33 Score=30.54 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK-DLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~-~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
.++.+.++-.++..++.++..+..++.-++.++.=.+..-.... ....+ | . -++.-+ .+..+....+..++..+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~-~-~~~~~~-~~~~~~~~~~~~~~~~~ 143 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDS--A-K-RNEPDL-KEWFQAFDFNGSEIERL 143 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc--c-c-cCCCCH-HHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666633322221110 00000 0 0 011111 13556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
..++..++..+.++++++.+++.++ -.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l-~~l~ 172 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNEL-NALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc
Confidence 7777788888888888888887777 4443
No 56
>PRK04325 hypothetical protein; Provisional
Probab=78.99 E-value=12 Score=25.11 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=35.1
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+-+..|+.|+.|.+..|+.|++.+..-++++..++..+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999888877
No 57
>KOG1029|consensus
Probab=77.80 E-value=37 Score=32.91 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTE 43 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E 43 (144)
+-++.++++.+|+.+..++..++.|..++.-
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445555556666666666666665555543
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=34 Score=31.97 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
..+-.....+..+....+.+......|...+.|.+.-++.|+. +|=++--.+=.+--++-=+.+++.+++.|+..
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~-----~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES-----ELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4445556666677777777777777777777666655555532 11111111111111222234556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667 91 INSLNEQLTKKGIEINEYKDKFDIQLQGNK 120 (144)
Q Consensus 91 i~~l~kql~~~~~el~e~~~k~~i~~~~~~ 120 (144)
|..-.+..+.+..+++.+++-.++.+.|.+
T Consensus 490 L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g 519 (652)
T COG2433 490 LEEKKKRVEELERKLAELRKMRKLELSGKG 519 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 666666666666666666655555555543
No 59
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.53 E-value=19 Score=25.61 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcccCCCcceeeeecc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEH--------KIVLDTLKDLDGDRRCFRLIGG 66 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~--------~~VleeL~~l~~d~~~yklvG~ 66 (144)
...+..++..++++...+..+...|..++... +.+-+.|.-+.|+.++|+++.+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCCC
Confidence 34444555555555555555555555554443 2455567778899999999887
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=77.42 E-value=20 Score=25.99 Aligned_cols=43 Identities=9% Similarity=0.280 Sum_probs=38.4
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...|++-+..|.+-.+.+..++.+|..++..++.++.+|+...
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888888999999999999999999999999999988
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.22 E-value=46 Score=29.40 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=20.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
......|.+++..|+..++.++..+.+++.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777766663333
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.07 E-value=57 Score=30.32 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
...+++..+...|..+....+..++.|+.++.+...-+.+...-++. .||.-++....+-...|.++++.|...
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~p------a~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPP------AGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc------ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888888888888888888866544443322222 377778877777777788888877765
Q ss_pred HH
Q psy13667 91 IN 92 (144)
Q Consensus 91 i~ 92 (144)
+.
T Consensus 103 lq 104 (617)
T PF15070_consen 103 LQ 104 (617)
T ss_pred HH
Confidence 54
No 63
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=77.01 E-value=60 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
-..+..+.+++..+..++.+|++++++.+.-++.|+..
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44667777777778888888888877777777766654
No 64
>KOG3335|consensus
Probab=76.55 E-value=7.5 Score=30.71 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=35.0
Q ss_pred CCcceeeeecceehh----ccHhhHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 56 GDRRCFRLIGGVLCE----KTVKEVIPTLTTN--RDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 56 ~d~~~yklvG~VLVe----~t~~Ea~~~L~~r--~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+-.+|-..||+||= +...|....-..+ +..|+..++.|+.++.++.+.+.++-+++
T Consensus 74 gE~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 74 GELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred hhHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999983 2333443333222 33444555666667777777777776666
No 65
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=76.47 E-value=12 Score=27.96 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred eeecceehhcc--------------HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 62 RLIGGVLCEKT--------------VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 62 klvG~VLVe~t--------------~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..++|++|++| ++|.+..|+..-.||...+-++..-+++-.+.+.-++..+
T Consensus 58 ~~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL 122 (126)
T PF13118_consen 58 HALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQL 122 (126)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35778889988 5677777777777888888788777777777777777666
No 66
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=76.41 E-value=13 Score=29.77 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
-.+....|..+...+..+..++..+...+.-.+.....|+.++++.. -+-++|-.|-..|..+|+
T Consensus 137 ~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~---------------~IQ~NLvtr~g~l~~El~ 201 (213)
T PF13093_consen 137 SPEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE---------------NIQPNLVTRDGELEAELE 201 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc---------------ccccccCCCCchHHHHHH
Confidence 35678899999999999999999999999999999999998877665 233344455566666666
Q ss_pred HHHHHHHH
Q psy13667 93 SLNEQLTK 100 (144)
Q Consensus 93 ~l~kql~~ 100 (144)
++.--+..
T Consensus 202 rmR~Llar 209 (213)
T PF13093_consen 202 RMRMLLAR 209 (213)
T ss_pred HHHHHHHH
Confidence 66554443
No 67
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.50 E-value=36 Score=34.01 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=27.9
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...+..+-+..+...++.+..+++.++..+..+..++..++..+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666665
No 68
>PRK04406 hypothetical protein; Provisional
Probab=75.24 E-value=17 Score=24.48 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=34.2
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+=+..|+.|+.|.+..|+.|++.+-.-++++..++..+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999999999998888877
No 69
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.20 E-value=18 Score=24.10 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=34.8
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++=+..|+.|+.|.+..|+.|++.+...++++..++..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999998888888877
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.15 E-value=46 Score=34.10 Aligned_cols=99 Identities=9% Similarity=0.175 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec-ceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG-GVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG-~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
+-.+++.++.++..+......++.++..+...+..++... -+-| +-|=..+..+.+.+...+.+.++..+..+
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~------~~~~~~~~SdEeLe~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK------QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666666666665555542 1223 33444557888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667 95 NEQLTKKGIEINEYKDKFDIQLQGNK 120 (144)
Q Consensus 95 ~kql~~~~~el~e~~~k~~i~~~~~~ 120 (144)
+..+......+..+++.++..+.-.+
T Consensus 462 E~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 462 EQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999865544333
No 71
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.14 E-value=25 Score=24.45 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.+.++-.+-.+...+..++..|..+.++...-+..+..-. +-...+..+...|...+..++
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------------------~~~~~l~~e~~~lk~~i~~le 87 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-------------------EDAEELKAEVKELKEEIKELE 87 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------------------CCTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666777777777666666655554432 233455556666777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy13667 96 EQLTKKGIEINEYK 109 (144)
Q Consensus 96 kql~~~~~el~e~~ 109 (144)
.++..++.++..+-
T Consensus 88 ~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 88 EQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666554
No 72
>PRK02119 hypothetical protein; Provisional
Probab=74.63 E-value=18 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=34.9
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++=+..|+.|+.|.+..|+.|++.+..-++++..++..+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999888888877
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=73.41 E-value=63 Score=30.39 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELT 42 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~ 42 (144)
..+..++.++..+..++..+...+.
T Consensus 206 ~~l~~~~~~l~el~~~i~~~~~~~~ 230 (880)
T PRK02224 206 ERLNGLESELAELDEEIERYEEQRE 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333333
No 74
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.06 E-value=34 Score=25.01 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=20.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+.+...|.......+.+-..|.+.+..+..++.++....
T Consensus 82 ~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 82 AESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555544
No 75
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.74 E-value=52 Score=28.81 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
.+..+++.|..++..+..++.+++..+..|..+... + -......+....+...+..+...+..+..++..+
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~---~------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQ---G------KLPPEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554221 1 1223556677777777788888888888888877
Q ss_pred HHHHHHH
Q psy13667 102 GIEINEY 108 (144)
Q Consensus 102 ~~el~e~ 108 (144)
+..+...
T Consensus 402 ~~~l~~~ 408 (451)
T PF03961_consen 402 KEELERS 408 (451)
T ss_pred HHHHHhh
Confidence 7777776
No 76
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=72.45 E-value=92 Score=29.75 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
..+...++.+...+..+...+..+..++..+..
T Consensus 451 ~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~ 483 (1164)
T TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 77
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=72.36 E-value=23 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
+.|..+++.|...-..+...+..-...|.
T Consensus 76 ~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 76 DEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 66667777777766666666665555443
No 78
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.08 E-value=47 Score=26.24 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQ-------IATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLT 81 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~-------l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~ 81 (144)
.|.-+.....+...|+..+.. +...+...+.++.-.+--+..|..|..| ++..| ...|.
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~d-------------knL~e-ReeL~ 124 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSED-------------KNLAE-REELQ 124 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CCchh-HHHHH
Confidence 444444444444555555544 4444444444444444555555555444 34444 46778
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.+++.++..+..-++.+..++.++.-....|...+..
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888888888877777666666544443
No 79
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.67 E-value=45 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG 56 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~ 56 (144)
+.+..-+..+....+.|..++...+.+..+++..++
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~ 208 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence 333444444444455555555555555555444443
No 80
>PLN02678 seryl-tRNA synthetase
Probab=69.95 E-value=82 Score=28.13 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.+.++-.+-++...+..++..|..+.+.+...+..+..-. +-...|..+...|..+|+.++
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-------------------~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-------------------EDATELIAETKELKKEITEKE 91 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777777777665532211 112345555556666777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy13667 96 EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 96 kql~~~~~el~e~~~k~ 112 (144)
..+..++.++.++...+
T Consensus 92 ~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 92 AEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777766666655555
No 81
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=69.74 E-value=27 Score=29.55 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----cceeeeecceehhccHhhHHHHHHHhHH-
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD----RRCFRLIGGVLCEKTVKEVIPTLTTNRD- 85 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----~~~yklvG~VLVe~t~~Ea~~~L~~r~e- 85 (144)
..++....+|+....++..|...+..-+..+......|+.+-.-.-+ =..|=..|..+...=..++.|.+..+-+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~ 163 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEG 163 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccc
Confidence 46788899999999999999999998888888888887776443211 1345556666666666666666665554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 86 --QLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 86 --~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.-..++..+...+..+++++.+++....+.+|
T Consensus 164 d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q 197 (333)
T PF05816_consen 164 DQMDAQELADLEQALFRLEQRIQDLQLSRQVAIQ 197 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233444555555555555555554444443
No 82
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.65 E-value=30 Score=29.75 Aligned_cols=46 Identities=11% Similarity=0.297 Sum_probs=33.2
Q ss_pred ccHhhHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 71 KTVKEVIPTLTTNRDQLNT----------LINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~----------~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
..+..++|.|-.|+..|.. .+..|+....++...+..|..-+ ..++
T Consensus 308 ~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L-~~ve 363 (388)
T PF04912_consen 308 DPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELL-NKVE 363 (388)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3456678888888887773 66678888888888888887776 4443
No 83
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=68.74 E-value=14 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=29.0
Q ss_pred eehhccHhh-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 67 VLCEKTVKE-VIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 67 VLVe~t~~E-a~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
.++-++.+- .+..|+.|+..|+.+|.+++..+..+..-..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444332 3567999999999999999999887765443
No 84
>KOG0250|consensus
Probab=67.82 E-value=92 Score=30.97 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceeh--hccHhhHHHHHHHhHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLC--EKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLV--e~t~~Ea~~~L~~r~e~le~~ 90 (144)
++.....+..+..+...+..++...+..+++.+.-.+.+++ .||..=- -++...=++.+++.++.|+.+
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k---------~I~~~~~~~~~~~~~~~~e~e~k~~~L~~e 409 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK---------QIADLEKQTNNELGSELEERENKLEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 44444444455554444444544444444444444333332 2222110 223444455566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy13667 91 INSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 91 i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.++.++..+..+.+++..++
T Consensus 410 vek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 410 VEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766665
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.34 E-value=30 Score=22.20 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|+.++..|+..+..++++.+++.+.++++.+.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.86 E-value=53 Score=24.77 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=41.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~ 89 (144)
+..+..+-.++.+|+.++..+......|+++++ .|...++.. ...+.+..|+..++.|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~-------~L~~~~t~~-------------el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELA-------SLSSEPTNE-------------ELREEIEELEEEIEELEE 130 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCHH-------------HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544 444444332 233444555555555555
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHh
Q psy13667 90 LINSLNE--------QLTKKGIEINEYKDKF 112 (144)
Q Consensus 90 ~i~~l~k--------ql~~~~~el~e~~~k~ 112 (144)
.+..+.. ..+.+.+....|++.+
T Consensus 131 kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 131 KLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5555443 3444444444444444
No 87
>KOG1655|consensus
Probab=66.68 E-value=14 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=36.5
Q ss_pred eeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 60 CFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 60 ~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
||.-.-|--=..+..++...|++|-+.|+..|.+|+.+|-.+..+|...
T Consensus 4 iFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 4 IFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred cccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3433334444567889999999999999999999988888777777654
No 88
>PRK01156 chromosome segregation protein; Provisional
Probab=66.40 E-value=65 Score=30.49 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy13667 26 EQRQIATKLSELEQELTEHKIVLDTLKDLD 55 (144)
Q Consensus 26 q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 55 (144)
.+..+..++..++..+.+++.-++++..+.
T Consensus 250 ~~~~~e~~i~ele~~l~el~~~~~el~~~~ 279 (895)
T PRK01156 250 MKNRYESEIKTAESDLSMELEKNNYYKELE 279 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555554444444444443
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.29 E-value=25 Score=32.45 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL--DGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l--~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
....+++.|+.+++.+..++..++.++..+..-+..+..- .....+=++-.-+-+....-+.+++=+.+++.|+..++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456666777777777777776666666554443333211 01112223333344555555666666666677777666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13667 93 SLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~ 112 (144)
.-...+..+..+.+.++..+
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 66666666666666655544
No 90
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.19 E-value=28 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=17.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++..|..|++.+...++....-.+.+.+++.+.+..+
T Consensus 61 ~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 61 STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444444444444444444444444444433
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.66 E-value=68 Score=25.60 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
...|+.+-..|..++..+......++.+++.++....++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666666666666666655333
No 92
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=65.58 E-value=39 Score=22.79 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLD 49 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vle 49 (144)
..|.+..+-..++.+++....|...+..+...+.++..+..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~ 52 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ 52 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678888888888888888888888888888887777643
No 93
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.30 E-value=64 Score=25.21 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD 57 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 57 (144)
..+.++..+..+...+..+...+.+.+.-++....--++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345667777777777777777777777777666544433
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.28 E-value=55 Score=24.04 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
+...-++.+...+.++..++..+..++..|+.+..+...=+=.|-...+.- +....-.+.|...+..+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~------------~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL------------RALKKEVEELEQELEEL 80 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777776666666554432211111111000 33344455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+...+-.-+-++.++.++++..+
T Consensus 81 ~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 81 QQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 6666655444444444444444433
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.13 E-value=1.2e+02 Score=28.18 Aligned_cols=85 Identities=12% Similarity=0.329 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
....+.+++.++.+++.+...+..-+...+.....++.+.+- .+|..| =+-.-|++.++.+..+.|.+.+.
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Y--------t~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAY--------TRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHH--------HHHHHHHHHhHHHHHHHHHHHHH
Confidence 445666667777777777766666666655555555444443 445444 12345778888888888777665
Q ss_pred H---HHHHHHHHHHHHH
Q psy13667 93 S---LNEQLTKKGIEIN 106 (144)
Q Consensus 93 ~---l~kql~~~~~el~ 106 (144)
- |.+.+..+..++.
T Consensus 513 DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 513 DTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 4444444444443
No 96
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=63.26 E-value=66 Score=29.53 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCcce-eeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 34 LSELEQELTEHKIVLDTLKDLDGDRRC-FRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 34 ~~~Le~ql~E~~~VleeL~~l~~d~~~-yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...+....++.+.+++.|+...+...+ -...+++-. .+.+++.+..+...+.+..++..+.+++.++++++++++..+
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSV-KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccccchhhhccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544333211 111111211 245566666677777777777777777777777777776655
No 97
>KOG2264|consensus
Probab=62.86 E-value=73 Score=30.01 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
.++..-.-...-++..+..+|++|.+++.+.+.++|+|+.+ +..-..++.+
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~-----------------------------i~~~q~eL~~ 132 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRL-----------------------------IPQKQLELSA 132 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------------------------HHHhHHHHHH
Confidence 33444444566788889999999999999999999988754 2222344555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 94 LNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 94 l~kql~~~~~el~e~~~k~~i~~ 116 (144)
|+..++.-+-.+.++.+..+-++
T Consensus 133 Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 133 LKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHhHHHHHHHHHHHHHhhcCCce
Confidence 66666666666667777665554
No 98
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.55 E-value=16 Score=31.38 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=38.2
Q ss_pred eehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 67 VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 67 VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
..++.+.+.-........+||+.++..+.+++...+.++..|+.++++-
T Consensus 156 ~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 156 AYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3444444444555566788999999999999999999999999999764
No 99
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.52 E-value=1.1e+02 Score=26.88 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
+..+-.+-.+...+..++..|..+.+++...+..+..-.. + ...+..+...|..+++.+++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~------------------~-~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE------------------D-AEALIAEVKELKEEIKALEA 87 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------------------c-HHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777777666654322111 1 12355555566666666666
Q ss_pred HHHHHHHHHHHHHHHh
Q psy13667 97 QLTKKGIEINEYKDKF 112 (144)
Q Consensus 97 ql~~~~~el~e~~~k~ 112 (144)
++..++.++.++...+
T Consensus 88 ~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 88 ELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666666655555
No 100
>smart00150 SPEC Spectrin repeats.
Probab=62.36 E-value=15 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=19.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQ 39 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ 39 (144)
.++..++.++.+++.++.++......+..+..
T Consensus 28 ~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~ 59 (101)
T smart00150 28 KDLESVEALLKKHEALEAELEAHEERVEALNE 59 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556677777777777766655555444443
No 101
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=62.15 E-value=1e+02 Score=26.57 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C-----CCcceeeeecceehhccHhhHHHHHHHhHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-D-----GDRRCFRLIGGVLCEKTVKEVIPTLTTNRD 85 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-~-----~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e 85 (144)
.+.+.....+.|+.++..+...+..++..+...+.++..-..- . =+.+.||- -||-..|.+--.|-..+.
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP----~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRP----NVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCC----chHHHHhhHHHHHHHHHH
Confidence 3455556666777777777777777777777776666544321 0 01223322 134444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 86 QLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 86 ~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
.|...+..|..++...+..+..+..
T Consensus 328 ~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444443
No 102
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.14 E-value=77 Score=25.06 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccCCCcceeeeecceeh-hccHhhHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL--------KDLDGDRRCFRLIGGVLC-EKTVKEVIPTLTT 82 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL--------~~l~~d~~~yklvG~VLV-e~t~~Ea~~~L~~ 82 (144)
.++++-..+...+..+-.+......++.++.++..-...+ ..=++| |--..|. +.+..+....|..
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed-----LAr~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED-----LARAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777778777778888877775544433 322222 2222333 3446777888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKFD 113 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~~ 113 (144)
.++.+...+..+..++..++.++.+++.+-+
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999998888763
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.05 E-value=80 Score=25.19 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+..|+.+..+|..++...+.+.+.+..++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555444
No 104
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=62.01 E-value=19 Score=23.33 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
..+|+.|+..|+.++...+...+.-+.++..+
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577777777777777777777666665543
No 105
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=61.69 E-value=22 Score=29.78 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
+.+++..|+.|+..|..+|+.|+..-+.++++|.
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emr 35 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMR 35 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999988886
No 106
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=61.43 E-value=1.1e+02 Score=26.72 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.+.++-.+-++...+..++..|..+.+.+..-+..+.. ..++....+..+...|..+|+.++
T Consensus 28 ~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~------------------~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKG------------------QKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777777777777776666544221 112213456666777777777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy13667 96 EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 96 kql~~~~~el~e~~~k~ 112 (144)
+++..++.++.++-..+
T Consensus 90 ~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 90 AALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777777777766655
No 107
>KOG0996|consensus
Probab=61.41 E-value=1.3e+02 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=10.5
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q psy13667 75 EVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l 94 (144)
+.+..+.+.++.++.+++.+
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.37 E-value=1.1e+02 Score=26.03 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD 57 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 57 (144)
+.+..-+-.+......|..++.....+.++++..+++
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~ 204 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH
Confidence 3333344445555555666666666666666555544
No 109
>KOG0976|consensus
Probab=60.34 E-value=57 Score=31.88 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCC-cceeeeecceehhccHhhHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD--------LDGD-RRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~--------l~~d-~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
.+..+....+.+..+.+.|...|+-++.++.|++.=|+++.. |..- ..||+. |.-| ++.-+.+..++.
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~-~~~L--~nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI-GEDL--HDKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH-HHHH--hhhhhHHhHHHH
Confidence 356667777888888899999999999999999887776642 1111 234443 3333 445556666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e 107 (144)
....+..+..++++++..+-+++.+
T Consensus 184 q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677666666555544
No 110
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=60.15 E-value=19 Score=22.38 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=17.7
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQ 97 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kq 97 (144)
+...+.+++..|..+++.+..+++.|+.+
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666666666666666666554
No 111
>KOG2196|consensus
Probab=59.98 E-value=1e+02 Score=25.67 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCcceeeeecceehhccHhhHHHHHHHhHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL--DGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQ 86 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l--~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~ 86 (144)
..+.+-.+..+...+....+.|-+.+.-+.++..|.+..|..|+.. .++..+| =...+.=..-.-...+.
T Consensus 111 ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~--------~~~~D~eR~qty~~a~n 182 (254)
T KOG2196|consen 111 NGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTY--------LSRADVEREQTYKMAEN 182 (254)
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh--------hhhhhHHHHHHHHHHHH
Confidence 3456677777778888888888888888888899988888888654 2233334 22233333334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 87 LNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 87 le~~i~~l~kql~~~~~el~e~~ 109 (144)
|...++++..-+..+-+.|+.+.
T Consensus 183 idsqLk~l~~dL~~ii~~lN~~~ 205 (254)
T KOG2196|consen 183 IDSQLKRLSEDLKQIIKSLNTMS 205 (254)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcc
Confidence 66666666666666655555443
No 112
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.97 E-value=77 Score=24.33 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=19.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.....++.++.++.++++.+..++.+.++.+.+.++|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344445555555555555555555555555555544
No 113
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=59.82 E-value=66 Score=28.63 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13667 25 AEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104 (144)
Q Consensus 25 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~e 104 (144)
-|..-+...+.+|+.++..|+..++.++. ...-+.+..+++.+...+..|...+.-++.-
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~--------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 222 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELEL--------------------NPDDPELKSDIEELERHISSLKERIEFLENM 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888999998888888776 2334566778888888888888888888888
Q ss_pred HHHHHHHh
Q psy13667 105 INEYKDKF 112 (144)
Q Consensus 105 l~e~~~k~ 112 (144)
+..+....
T Consensus 223 l~~l~~~~ 230 (475)
T PF10359_consen 223 LEDLEDSE 230 (475)
T ss_pred HHHHhhhc
Confidence 87777766
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=52 Score=30.79 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQL 98 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql 98 (144)
..-.+...+..+-.....|+.+.++.+.-+++++ +.+++|-.-.-==+...+..--....++.++.+|.+|++.|
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k-----~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELK-----REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3355666666677777777777777776666666 34554432211101111111112233444566667777777
Q ss_pred HHHHHHHHHHHHHh
Q psy13667 99 TKKGIEINEYKDKF 112 (144)
Q Consensus 99 ~~~~~el~e~~~k~ 112 (144)
.+..+..+++..++
T Consensus 491 ~e~~~~ve~L~~~l 504 (652)
T COG2433 491 EEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777766
No 115
>PRK00846 hypothetical protein; Provisional
Probab=58.86 E-value=55 Score=22.31 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=35.5
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+=+..|+.|+.|.+..|+.|++.+...+..+..++..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999999999999999999988888888877
No 116
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=58.39 E-value=60 Score=26.22 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=68.4
Q ss_pred CCCccHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHH
Q psy13667 8 TTKLTDEEVYNGFQ------NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLT 81 (144)
Q Consensus 8 ~~~~~~q~~~~~~q------~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~ 81 (144)
..|+.+-+.+..++ .+...++.|..-.......+.++...|++-..- |..+-...|.-.-..+-.++-..+.
T Consensus 6 ~lP~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~e--d~~~r~~~g~~W~r~~S~~~~~~l~ 83 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEERE--DEQLRAKYGERWTRPPSSELNASLR 83 (296)
T ss_dssp S--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSTTTCGSS-HHHHCHHHH
T ss_pred CCChHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCcCCCcHhhHHHHH
Confidence 56777777666655 444455555555555555666666555554433 3344444466555556677778999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+..+...+..-...-..+...+..+...+
T Consensus 84 ~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l 114 (296)
T PF13949_consen 84 KELQKYREYLEQASESDSQLRSKLESIEENL 114 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999998888888889999888877
No 117
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.25 E-value=97 Score=24.92 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccH-hhHHHHHHHhHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV-KEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~-~Ea~~~L~~r~e~le~~ 90 (144)
.++.--.++++...+...+..+++.|+.++.+....+..+.....+..++..-.++=+.+.. .+....|...++-|..+
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~ae 146 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAE 146 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHH
Confidence 44555677778888888888899999999998888887774344443333333333233322 44566777777777777
Q ss_pred HHHHHHHHHHH
Q psy13667 91 INSLNEQLTKK 101 (144)
Q Consensus 91 i~~l~kql~~~ 101 (144)
|.......+..
T Consensus 147 L~~er~~~e~q 157 (202)
T PF06818_consen 147 LQRERQRREEQ 157 (202)
T ss_pred HHHHHHhHHHH
Confidence 76555444433
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.70 E-value=1.1e+02 Score=25.24 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVL 48 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vl 48 (144)
-..|..++..+..+-.+..++++++.+...=+
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554333
No 119
>COG5293 Predicted ATPase [General function prediction only]
Probab=57.26 E-value=1.2e+02 Score=27.86 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=44.9
Q ss_pred cceeeeecce---ehhccHhhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 58 RRCFRLIGGV---LCEKTVKEVIP----TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 58 ~~~yklvG~V---LVe~t~~Ea~~----~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-++|--||+. +|+++..++.. .++.|.+|+..+|.++...++..+.+++++-+..
T Consensus 304 ~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~r 365 (591)
T COG5293 304 QVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRR 365 (591)
T ss_pred HHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888866 47888888764 5789999999999999999999998888776654
No 120
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=57.09 E-value=46 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
...|...+..++.+|..|..-|..++....+|+.+++|..
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~ 70 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITP 70 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCch
Confidence 3567777788899999999999999999999999998875
No 121
>KOG1003|consensus
Probab=56.47 E-value=1.1e+02 Score=24.79 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
.++...+..+.+.+..+...-..+......++..+.++.. =++.=+.|-+|.+..+..
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd----------------------KLkEaE~rAE~aERsVak 169 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD----------------------KLKEAETRAEFAERRVAK 169 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------------HHhhhhhhHHHHHHHHHH
Confidence 4445555555566666666666666666666666555543 344556677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 94 LNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 94 l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
|.+...+++.++...+.+| ..++.
T Consensus 170 Leke~DdlE~kl~~~k~ky-~~~~~ 193 (205)
T KOG1003|consen 170 LEKERDDLEEKLEEAKEKY-EEAKK 193 (205)
T ss_pred HcccHHHHHHhhHHHHHHH-HHHHH
Confidence 8888888888888888887 55544
No 122
>PF13514 AAA_27: AAA domain
Probab=56.45 E-value=64 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVL 48 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vl 48 (144)
.+.....++..+...+..++.++.....-+
T Consensus 737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~ 766 (1111)
T PF13514_consen 737 ELREALAEIRELRRRIEQMEADLAAFEEQV 766 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555554433
No 123
>PF13514 AAA_27: AAA domain
Probab=56.11 E-value=71 Score=31.30 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG----DRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~----d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..+.+...+...+.+++.+..++..+..+++.++.+...+..+.. ...+--+...+.++.+-.+-...+..++..+
T Consensus 175 ~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~ 254 (1111)
T PF13514_consen 175 EYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEA 254 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554333322210 1122223344456655555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 88 NTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~ 106 (144)
...+..+...+..+..++.
T Consensus 255 ~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 255 QAQLERLQEELAQLEEELD 273 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555555555544
No 124
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.86 E-value=82 Score=26.71 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC----CCcceeeeecceehhccHhhHHHH-----HHHhHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTL-KDLD----GDRRCFRLIGGVLCEKTVKEVIPT-----LTTNRDQLN 88 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL-~~l~----~d~~~yklvG~VLVe~t~~Ea~~~-----L~~r~e~le 88 (144)
.+..|+.++..|..++.+...-+.+|-+||-.= .+=+ ++... ..++++|-+.-..+++. |.-|+-.|-
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~--~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~ 225 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVG--HPKRALVSQEAAQLLESAGDGSLDVRLKKLA 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccC--CCcccccchhhhhhhcccCCCCHHHHHHHHH
Confidence 334444444444445555555555555555331 1111 11111 56777887776666654 456666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+-+.|..++..+..++++.+..-
T Consensus 226 ~eke~L~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777776666555
No 125
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=55.55 E-value=18 Score=24.79 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
|-.++++.+|+.|-..+..|...+..|.+.-.-...+++.|..|
T Consensus 3 pLEq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~L 46 (78)
T PF08656_consen 3 PLEQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLREL 46 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 55689999999999999999998888844444444555555555
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.42 E-value=43 Score=28.03 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=14.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+..+.++.+.+..|+..|++|..++.++..++.+.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333333
No 127
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.91 E-value=52 Score=20.82 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=27.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
..-+..|+.+++.|+.+...|...+..+..++..+...
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777777777777777777654
No 128
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=54.78 E-value=45 Score=23.26 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhcccC----CCcc-------eeeeecceehhccHhhH-------------HHHHHHhHHHHHHH
Q psy13667 35 SELEQELTEHKIVLDTLKDLD----GDRR-------CFRLIGGVLCEKTVKEV-------------IPTLTTNRDQLNTL 90 (144)
Q Consensus 35 ~~Le~ql~E~~~VleeL~~l~----~d~~-------~yklvG~VLVe~t~~Ea-------------~~~L~~r~e~le~~ 90 (144)
..++.++......++++..+- .-.. .+-+.|++.|+-.+.+. ..++++=+++++.+
T Consensus 6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r 85 (120)
T PF02996_consen 6 ENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKR 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHH
Confidence 445555555554444444432 2222 34455677777766442 34678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy13667 91 INSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 91 i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.+++++..+.+++..++..+
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888
No 129
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.60 E-value=36 Score=21.85 Aligned_cols=36 Identities=8% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.++-.+..++.+++.+.+.++.+.+-+.++-.-|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666665555
No 130
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.58 E-value=1.1e+02 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT 50 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee 50 (144)
..+-.+|..++.....+..++..|+..+.+.+.-..+
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~ 138 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKA 138 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555544443
No 131
>smart00338 BRLZ basic region leucin zipper.
Probab=54.50 E-value=53 Score=20.80 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..-+..|+.++..|+.+...|...+..+..++..+...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888888888888888877777776654
No 132
>KOG0933|consensus
Probab=54.14 E-value=56 Score=32.40 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=20.5
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.+..|+..+=+.|+..++++|+.+...++.-..++.+....|
T Consensus 774 lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 774 LEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred HHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444455555555555544444444444444433333
No 133
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.57 E-value=20 Score=19.11 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13667 26 EQRQIATKLSELEQELTEHK 45 (144)
Q Consensus 26 q~q~l~~q~~~Le~ql~E~~ 45 (144)
+++.+...|..|+.+|+++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56778888999999999875
No 134
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.02 E-value=1.2e+02 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=36.1
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.+.+-+.....|.++.+..+..|...+..++.++..|+.+| -.++
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~-~~~~ 224 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY-KKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45556667778888888888899999999999999999888 5544
No 135
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.84 E-value=1.2e+02 Score=27.98 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLD 49 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vle 49 (144)
.....++..+..++..+..+...+..++..++.-++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele 240 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELE 240 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444443333
No 136
>PRK11519 tyrosine kinase; Provisional
Probab=52.64 E-value=27 Score=32.55 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=43.4
Q ss_pred eeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 62 RLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 62 klvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
..+..+.++.+.+.-.....+-.+||+.++..+..++...+..+++|+.++++
T Consensus 247 N~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 247 NSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455666667676666677888999999999999999999999999999865
No 137
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=52.37 E-value=7.9 Score=27.62 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
+..+...|..|..+...+..++..|..++.++..-...|..
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 45566667777777777777777777777666554444433
No 138
>KOG4196|consensus
Probab=52.35 E-value=94 Score=23.47 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=38.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNK 120 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~ 120 (144)
=...|++.+..|..++++|......+.-+++.|+.+| -+++..+
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~-e~l~~~~ 118 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY-EALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 3567888889999999999999999999999999999 7777654
No 139
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.33 E-value=1.4e+02 Score=24.89 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+.+|+..|+.+..+|+..+..+..+..++++++
T Consensus 166 ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 44555555555555555555555544444444444
No 140
>KOG0250|consensus
Probab=52.07 E-value=2.5e+02 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 81 TTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 81 ~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...++.++..++.|.++.++++..+..+..++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555554
No 141
>PRK04325 hypothetical protein; Provisional
Probab=51.68 E-value=66 Score=21.46 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...++.++.|+..+-+-.+++..+..++.-+..++
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444444
No 142
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.66 E-value=29 Score=32.40 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=41.8
Q ss_pred ecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 64 IGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 64 vG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
+..+.++.+.+.=...-.+-++||+.++..+..++...+..+++|+.++++
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~ 299 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS 299 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455566666666666677778999999999999999999999999999854
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.65 E-value=1.9e+02 Score=26.30 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIA-TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~-~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
-...|..+++..+.+. .....++..+.+.+-..+.+. ...--=.-.+..+.+..++..+..|...+..|
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r----------f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR----------FKKAKQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887 667777777777766654443 33333344567788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 95 NEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 95 ~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.+....-..++.+++.+| ..++.
T Consensus 128 ~~~e~~nr~~i~~l~~~y-~~lrk 150 (560)
T PF06160_consen 128 LESEEKNREEIEELKEKY-RELRK 150 (560)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 888888888888888888 55443
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.73 E-value=1.1e+02 Score=23.22 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
+....++.+..+..++.+++..+.++..-++.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555544444443
No 145
>PTZ00464 SNF-7-like protein; Provisional
Probab=50.61 E-value=50 Score=26.47 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=26.3
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el 105 (144)
+.|..|+...|.+|.+.|+..|++++.++....+.+
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888877776665555444
No 146
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=49.09 E-value=2.4e+02 Score=28.19 Aligned_cols=51 Identities=6% Similarity=0.100 Sum_probs=38.9
Q ss_pred eeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 62 RLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 62 klvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.-++++.+..+..++...+..++..++..+..+..+...+.+.+..+...+
T Consensus 879 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l 929 (1201)
T PF12128_consen 879 EKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVL 929 (1201)
T ss_pred hhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333667777788888888888888888888888888888888777777555
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.75 E-value=2.2e+02 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=23.2
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...+.+..+++++..+...+..+..++..+.+++..+...+
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666555555555555555555555544
No 148
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.57 E-value=1.2e+02 Score=23.01 Aligned_cols=41 Identities=32% Similarity=0.410 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
++.+....+++++.++..+......+..++...+.....+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666777777777777777777777776666654444
No 149
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=48.14 E-value=38 Score=29.97 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
.|..|.+.|...+++++++++.++.+|+.+++.|..+
T Consensus 403 ~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~q 439 (462)
T PRK08032 403 IIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQ 439 (462)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555777788888888888888888888877777444
No 150
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.77 E-value=1.7e+02 Score=26.04 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.-..+..|+.++..+..++..++.++.=.+..+.-|+.+... .-+.+++-+ .. -..-...+.+-.+++..++..+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREG--LTEPIKDSA-KR-NEPDLKEWFQAFDFNGSEIERLL 144 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccccccc-cc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999999888888888888777532 112333322 11 12235578888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 96 EQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 96 kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
..+.++..++.++++++ -.++.+
T Consensus 145 ~~~~~~~~~~~~~~~~l-~~l~~~ 167 (525)
T TIGR02231 145 TEDREAERRIRELEKQL-SELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999 666654
No 151
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.70 E-value=89 Score=24.50 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=26.1
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLN----------EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~----------kql~~~~~el~e~~~k~ 112 (144)
...++++..+|+..+..|+.+|.+++ ..-..++.+++.|...|
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777776666666665544 33444556666666665
No 152
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.45 E-value=42 Score=28.28 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
+..+|++.++.++.+.+...+.++.+|+.++++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788889999999999999999999998854
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.34 E-value=1.6e+02 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=9.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
|.++++.|+..+..+...+..++..+.
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 154
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=47.27 E-value=43 Score=22.06 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
+..|+.|+-.|..+|++++.++..+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45788999999999999988776553
No 155
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=47.24 E-value=93 Score=22.24 Aligned_cols=68 Identities=15% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 33 KLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 33 q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
....+-..+.|...+++....-+.. .....+....|..++..|+..+..+...+..+...+..+...+
T Consensus 50 ~lr~~G~~L~~I~~~l~~~~~~~~~------------~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 50 RGKRLGFSLEEIRELLDLYDPPGGN------------RKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHCCCCHHHHHHHHHhhccCCch------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666777777776543321100 1123466677888888888888888888877777777666543
No 156
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.13 E-value=1.7e+02 Score=24.48 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
++..-.+|..++.....+..++..|..++.+...= ...+.++++.+...|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k-----------------------------~~~~~~~i~~~~~eik 83 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK-----------------------------IDELQKEIDQSKAEIK 83 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555443322 2345677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 93 SLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.+.+.|..+...+.+.++.++-|++.
T Consensus 84 ~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 84 KLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888666654
No 157
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.74 E-value=98 Score=31.83 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=29.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+.|+.+++.|+..-+++.+++...+++++.+...+
T Consensus 984 ~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l 1022 (1486)
T PRK04863 984 SDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVL 1022 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888777777777777777766665
No 158
>PF14282 FlxA: FlxA-like protein
Probab=46.61 E-value=73 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHK 45 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~ 45 (144)
..+..-.+.+.|+.++..|..++.++..+..+-.
T Consensus 45 ~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 45 DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777777777766553
No 159
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=46.57 E-value=52 Score=26.24 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
..|..+...|..+++.+++++..++.++..++..|.-++
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf 227 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQF 227 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777664433
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.55 E-value=1.8e+02 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSEL 37 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~L 37 (144)
+...++.|+.++..+.+....+
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444444444444433333
No 161
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=45.95 E-value=1.9e+02 Score=25.00 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---cceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD---RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 20 ~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d---~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
-..|...+..+...+..|.....-.+.+++.+.. |-. ..++---+-.-++-..|+|-..|.+.++.|+..-..|..
T Consensus 59 k~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~-pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~ 137 (384)
T PF03148_consen 59 KNELERELEELDEEIDLLEEEKRRLEKALEALRK-PLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQR 137 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777762 210 111111123334455667777777777777766666666
Q ss_pred HHHHHHHHHHHHH
Q psy13667 97 QLTKKGIEINEYK 109 (144)
Q Consensus 97 ql~~~~~el~e~~ 109 (144)
.++....+|..++
T Consensus 138 ~l~~~~eQl~~lr 150 (384)
T PF03148_consen 138 TLEQAEEQLRLLR 150 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 162
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=45.43 E-value=1.3e+02 Score=22.79 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHH-HHHHHHHHHHHHHH
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRD-QLNTLINSLNEQLT 99 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e-~le~~i~~l~kql~ 99 (144)
..|+.-++.|..-+..|..-...+-..-.-|.. +++|-+|- +-|+..|...|.+.++ .|..-+.++++.+.
T Consensus 7 ~SL~~S~~lL~~Si~~L~~~~~D~pRL~kvL~t----~R~FeLvp----e~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~ 78 (153)
T PF08287_consen 7 SSLRSSVQLLQSSIETLDSGTSDFPRLTKVLQT----TRHFELVP----EPDLQAAQQSLRDEIEPQINHLLDKAEKHLE 78 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHcc----cCcccccC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665544433 67888775 4566666666666655 45556666666666
Q ss_pred HHHHHHHHHHHHh
Q psy13667 100 KKGIEINEYKDKF 112 (144)
Q Consensus 100 ~~~~el~e~~~k~ 112 (144)
.++.+.+.++.++
T Consensus 79 kL~Rr~~tL~ak~ 91 (153)
T PF08287_consen 79 KLQRREETLKAKC 91 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 163
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.83 E-value=2.9e+02 Score=27.74 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=22.8
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+-+..+...++.+...+..+......++.++..++.++
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555666666666666665554
No 164
>KOG0243|consensus
Probab=44.74 E-value=3.3e+02 Score=27.17 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.3
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
+..+....|.++++.++..|..-...+..+++++.+.+..
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666555554
No 165
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.61 E-value=21 Score=27.81 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=27.2
Q ss_pred eecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 63 LIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 63 lvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
.=|+.|++-|-.+.+..|+++++.|+.++..
T Consensus 141 ~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~ 171 (178)
T PRK06266 141 QCGEMLEEYDNSELIKELKEQIKELEEELKL 171 (178)
T ss_pred CCCCCCeecccHHHHHHHHHHHHHHHHHhcc
Confidence 4589999999999999999999999888763
No 166
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.42 E-value=62 Score=22.09 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 85 DQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 85 e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
..|..+-.+|+..++.++.++.+....+.|+-
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45667777788888888888888888775553
No 167
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=44.11 E-value=50 Score=23.00 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTK---KGIEINEYKDKFDI 114 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~---~~~el~e~~~k~~i 114 (144)
.+++--+|+..++.||.+-+.. ...+.++++.+.||
T Consensus 51 i~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NI 89 (93)
T cd00238 51 ILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRLNI 89 (93)
T ss_pred HHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4558889999999999999988 67888999988876
No 168
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=44.10 E-value=1.1e+02 Score=21.32 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
..+|..+..-...+......|.....+..--+.-|.
T Consensus 34 ~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id 69 (99)
T PF10046_consen 34 SLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQID 69 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 169
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.08 E-value=75 Score=27.54 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ----------LTKKGIEINEYKDKF 112 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kq----------l~~~~~el~e~~~k~ 112 (144)
-++.+-+.++.+..++++++.++.+++.+... +.+++++++.+.+++
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999988877764 566666666666555
No 170
>KOG0995|consensus
Probab=44.03 E-value=1.6e+02 Score=27.39 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCcceee-eecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy13667 24 RAEQRQIATKLSELEQELTEHKIVLDTLKDLD----GDRRCFR-LIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQL 98 (144)
Q Consensus 24 q~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~----~d~~~yk-lvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql 98 (144)
......+..++..++.+..+..--+.+++..+ ..++.|+ |-+.| .-....+..++.+...+++.++.+...+
T Consensus 227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~---nK~~~y~~~~~~k~~~~~~~l~~l~~Ei 303 (581)
T KOG0995|consen 227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDV---NKFQAYVSQMKSKKQHMEKKLEMLKSEI 303 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33344444455555555555544444544443 2244444 22222 1123455666777777777777777777
Q ss_pred HHHHHHHHHHHHHh
Q psy13667 99 TKKGIEINEYKDKF 112 (144)
Q Consensus 99 ~~~~~el~e~~~k~ 112 (144)
+.++.+++.++...
T Consensus 304 e~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 304 EEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777654
No 171
>KOG0933|consensus
Probab=43.95 E-value=2.1e+02 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQEL 41 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql 41 (144)
..+|+..|.++..+..++..|+.+.
T Consensus 683 ~~~~~~~q~el~~le~eL~~le~~~ 707 (1174)
T KOG0933|consen 683 QKELRAIQKELEALERELKSLEAQS 707 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 172
>KOG0996|consensus
Probab=43.80 E-value=3.2e+02 Score=27.81 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDR 58 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~ 58 (144)
+.+=.+.-..++.+..+.+++..|+.++.+...=+.++++++.+.
T Consensus 394 ~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 394 QDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 333444556677888889999999999999999999999887653
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.79 E-value=2.9e+02 Score=26.17 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhcccCCCc--ceeeeecceehhccHhhHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHK-----------IVLDTLKDLDGDR--RCFRLIGGVLCEKTVKEVIP 78 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~-----------~VleeL~~l~~d~--~~yklvG~VLVe~t~~Ea~~ 78 (144)
..+++-.++.+|+.++..-..++..++.++.+.. ..+.+|..+.+.. ==..|-+.-=||.|.=-|+-
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777664333 3333332221100 00011122224455555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+-.+.+|.++..|.+=++.|.++..+|.++..
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555444444444444444433
No 174
>PLN03184 chloroplast Hsp70; Provisional
Probab=43.79 E-value=2.7e+02 Score=25.88 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=24.4
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTL-INSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~-i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+-+.++.+....|++-.+-|... .+.++..++++.+.+..+..++
T Consensus 587 ~~~~~eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 587 DKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444432 2345555666666666666554
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.25 E-value=1.2e+02 Score=22.92 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...+++.|+.....+...++.++.+...+...+
T Consensus 92 ~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~ 124 (140)
T PF10473_consen 92 KQEKVSELESLNSSLENLLQEKEQEKVQLKEES 124 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444443
No 176
>PRK14127 cell division protein GpsB; Provisional
Probab=43.19 E-value=96 Score=22.47 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLD 49 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vle 49 (144)
+..++..|..|..+...|..+...|+.++.++..=+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667778888888888888888888888888776444
No 177
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.96 E-value=2.6e+02 Score=25.38 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=49.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le 88 (144)
...+++.++.++++++.+++.+..+=..|. .||+........++ .. |.+.+.-....+.+..+.+.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~---~eN~~L~~r~~~id--~~---------i~~av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALK---AENERLQKREQSID--QQ---------IQQAVQSETQELTKEIEQLK 122 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHH--HH---------HHHHHHhhhHHHHHHHHHHH
Confidence 345688999999999999988877655543 44544443333332 11 22233333445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 89 TLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e 107 (144)
.++.++...+..++.++..
T Consensus 123 ~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 123 SERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666665555543
No 178
>COG4550 Predicted membrane protein [Function unknown]
Probab=42.67 E-value=79 Score=23.38 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHH---HHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy13667 33 KLSELEQELTEHKIVL---DTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS--LNEQLTKKGIEINE 107 (144)
Q Consensus 33 q~~~Le~ql~E~~~Vl---eeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~--l~kql~~~~~el~e 107 (144)
--++.|.++++|..|. ++|+.+...++-|+-+ ++.+|+.-.+.+++.|+.+|+. +-..+...+...++
T Consensus 26 ~fq~aE~qin~n~~v~~~~~~iK~lQKeAVn~q~y-------~K~eAlkqses~i~~le~ei~~~PlVeefr~sq~daNd 98 (120)
T COG4550 26 FFQQAEAQINANQKVKTKVDEIKKLQKEAVNLQHY-------DKEEALKQSESKIDELEAEIDHLPLVEEFRTSQEDAND 98 (120)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHh-------hHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhHHH
Confidence 3456788999988775 4566666676666544 5889999999999999999986 33444444444444
Q ss_pred HH
Q psy13667 108 YK 109 (144)
Q Consensus 108 ~~ 109 (144)
+-
T Consensus 99 Ll 100 (120)
T COG4550 99 LL 100 (120)
T ss_pred HH
Confidence 43
No 179
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=41.33 E-value=1.6e+02 Score=22.47 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhcc--HhhHHHHHHHhHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT--VKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t--~~Ea~~~L~~r~e~le~ 89 (144)
..++...+|...+..+..+..++..|....+|+..= ..-++.+||.+.+- ...-+..|+..++....
T Consensus 17 ~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~-----------~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~ 85 (148)
T COG2882 17 EEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQN-----------LNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQS 85 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888877777776532 12356788888553 44445555555544444
Q ss_pred HHHHHHHHHHHH
Q psy13667 90 LINSLNEQLTKK 101 (144)
Q Consensus 90 ~i~~l~kql~~~ 101 (144)
.+..+.++++..
T Consensus 86 ~~~~~~~~ve~~ 97 (148)
T COG2882 86 QLSKLRKQVEQK 97 (148)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 180
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.14 E-value=2.7e+02 Score=25.11 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG 56 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~ 56 (144)
..+....+|+.++.+++.+......+..++...+.-+++|+.+++
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 445566777777777777777777777888888888888888764
No 181
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.03 E-value=2.8e+02 Score=25.19 Aligned_cols=100 Identities=12% Similarity=0.266 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh-cccCCCcceeeeecceehhccHhhHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATK----------LSELEQELTEHKIVLDTL-KDLDGDRRCFRLIGGVLCEKTVKEVIPT 79 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q----------~~~Le~ql~E~~~VleeL-~~l~~d~~~yklvG~VLVe~t~~Ea~~~ 79 (144)
..+..+-...+.+..++..+.+. ...++.++.+.....+.+ ..+......|..+-.-+ ....+-+..
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~l--eel~e~lee 394 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEEL--EEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHHHH
Confidence 33444555555666666666665 566666666666655533 33333444443321111 112233344
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+++....|...+..|.+...+...++..|+.++
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666666666666666
No 182
>PRK04406 hypothetical protein; Provisional
Probab=40.74 E-value=1.1e+02 Score=20.50 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++.|+..|+..+.-.+..++.+.+-+.+.+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555444
No 183
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.69 E-value=3.8e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=19.1
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+.+..+...++.++..+..+...+.....++..+...+
T Consensus 875 l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444444444444444443
No 184
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=40.63 E-value=75 Score=24.12 Aligned_cols=48 Identities=17% Similarity=0.330 Sum_probs=41.7
Q ss_pred cCCCccee-eeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 54 LDGDRRCF-RLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 54 l~~d~~~y-klvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
+...-+|| -.-|+|-....+=.-..+=...+-+|+.+|+.|...|+.+
T Consensus 77 i~~t~rC~Il~n~tVnCs~~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~L 125 (145)
T PF12548_consen 77 IQVTHRCFILPNDTVNCSNVIYQDPKAWKDHRLHIDHEIETLQDKIKNL 125 (145)
T ss_pred ccceeeEEEecCCcEeccHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345887 7789999999999999999999999999999999888876
No 185
>PRK10698 phage shock protein PspA; Provisional
Probab=40.49 E-value=1.9e+02 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
.+-.+|...+.....|..++..|+..+.+.+.=.++|
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554433333
No 186
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.92 E-value=53 Score=24.58 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHHHhcccCCCcceeeeecceehhcc--HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 45 KIVLDTLKDLDGDRRCFRLIGGVLCEKT--VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 45 ~~VleeL~~l~~d~~~yklvG~VLVe~t--~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..|..+|+.|..=..+|+=-+......+ ..--.......+...+..+++|+.++..+..++..++.++
T Consensus 48 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 48 EAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777655666665544444222 2222345556666777788888888888888888888877
No 187
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.86 E-value=56 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=38.2
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
+.+.++.+.+.-......-.++|+.++..+.+++...+.++..|+.++++-
T Consensus 177 a~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 177 AAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 333444444444445556678999999999999999999999999998764
No 188
>PRK09039 hypothetical protein; Validated
Probab=39.29 E-value=2.4e+02 Score=24.01 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
+.+....|...+.+...|.+++..|..|+...+..|+..+.
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666665555555544443
No 189
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=39.28 E-value=3.6 Score=29.68 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.9
Q ss_pred ceeeeecceehhcc
Q psy13667 59 RCFRLIGGVLCEKT 72 (144)
Q Consensus 59 ~~yklvG~VLVe~t 72 (144)
++||.+| |-++.+
T Consensus 65 kLYrsLG-I~~e~~ 77 (118)
T PF08286_consen 65 KLYRSLG-IELEYD 77 (118)
T ss_dssp HHHHHCC-EEEEC-
T ss_pred HHHHhCc-EEEEec
Confidence 7899999 777663
No 190
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.16 E-value=4e+02 Score=26.46 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy13667 34 LSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 34 ~~~Le~ql~E~~~VleeL~~l 54 (144)
...+.....++..+.++++..
T Consensus 346 ~~e~~~~~~~~~~~~~e~~~~ 366 (1163)
T COG1196 346 LEELEQLLAELEEAKEELEEK 366 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444554444443
No 191
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.10 E-value=1.8e+02 Score=22.56 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CC-Ccceeeeecceeh-hccHhhHHHHHHHh
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----DG-DRRCFRLIGGVLC-EKTVKEVIPTLTTN 83 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----~~-d~~~yklvG~VLV-e~t~~Ea~~~L~~r 83 (144)
+.++++-..|.+++..+..+......++.++.++..-...++.= .. +..+.| ..|. +.+..+-...+...
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr---~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR---EALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45777788888889999999999999999998887666555432 11 111111 1222 34456667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.+...+..|..++..+..++.+++.+.
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888888776
No 192
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.94 E-value=1.1e+02 Score=25.51 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=28.8
Q ss_pred eeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 62 RLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 62 klvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
|-+----|++.+.+++..+..+++.+...+..+..-...+..++++.+
T Consensus 156 r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk 203 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKK 203 (267)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333478888888888888877777666655444444444443333
No 193
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=38.89 E-value=2.6e+02 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy13667 37 LEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 37 Le~ql~E~~~VleeL~~l 54 (144)
|+..+.|+..+.++|..+
T Consensus 268 le~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEV 285 (359)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.46 E-value=2.5e+02 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcC
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKT 121 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~ 121 (144)
+.++++.+.+..++++.++.++..++..+ -+.+....
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~KsEL-ErsQ~~~~ 133 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKSEL-ERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 44566677788899999999999999888 67666544
No 195
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.32 E-value=1.4e+02 Score=21.10 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 31 ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 31 ~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+.....+...+.|...++.....- + ..+.+++...|..+++.|+..+..+......+...+..++
T Consensus 49 I~~lr~~G~sl~eI~~~l~~~~~~-----------~---~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 49 IKEARQLGFTLAELKAIFAGHEGR-----------A---VLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHcCCCHHHHHHHHhccccC-----------C---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666666555322211 1 2455677788888888888888888888888777666554
No 196
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.24 E-value=2e+02 Score=22.81 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
.+..|+..|...++.+.+.+.....++.+++.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 197
>KOG1760|consensus
Probab=38.11 E-value=1.7e+02 Score=21.93 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD--GDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
....+..++.....++.-|+.-.+|+.+.-+.=+.++ -. -||=.+..=-+.--.++.+.++.+.++.++.+.+.+..
T Consensus 31 R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vG-dvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~ 109 (131)
T KOG1760|consen 31 RKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVG-DVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISA 109 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehh-hhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666667777777777777766533333 11 24444444445555777777777777777777777777
Q ss_pred HHHHHHHHH
Q psy13667 97 QLTKKGIEI 105 (144)
Q Consensus 97 ql~~~~~el 105 (144)
.+..+.+-+
T Consensus 110 ~m~~LK~~L 118 (131)
T KOG1760|consen 110 RMDELKKVL 118 (131)
T ss_pred HHHHHHHHH
Confidence 777776554
No 198
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=37.97 E-value=1.2e+02 Score=22.62 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=33.0
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
-++-++.++++...+...+..++.++..|+-+.+.+..+..
T Consensus 11 ~ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 11 AIVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678889999999999999999999998888777776654
No 199
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.84 E-value=1.1e+02 Score=24.66 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+..++..+...+..+.+++.+++.+|
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 200
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.78 E-value=1.2e+02 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhcCcC
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK---FDIQLQGNKT 121 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k---~~i~~~~~~~ 121 (144)
..++++++.++..+..+.+.+..+...+.++... .||+|.|-.+
T Consensus 154 s~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPE 200 (370)
T PF02994_consen 154 SELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPE 200 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES---
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCC
Confidence 4445555555555555555555555555554443 4677776444
No 201
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.64 E-value=1.4e+02 Score=23.10 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
++...++++|+.+...+-.++..+-.+|.++...|..+
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666555
No 202
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.58 E-value=1.3e+02 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..|+++++.++.+++.+.++.++.+.+++++...+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~ 113 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34455555555444444455555565555555555
No 203
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.15 E-value=2.2e+02 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 27 QRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 27 ~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
...+..+...+.....+-..++++++.
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek 51 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEK 51 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555555556666666666666666654
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.05 E-value=3.7e+02 Score=25.50 Aligned_cols=31 Identities=3% Similarity=0.161 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e 107 (144)
.....+.++.|...++.|...++.+..+++.
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444454444444444444
No 205
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.02 E-value=2.2e+02 Score=22.83 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=22.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
+-.|+.++..++.+|+.++.++..+....+ -..+++.+...
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~--~sti~i~l~~~ 204 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD--YSTITISLYEP 204 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--eEEEEEEEEec
Confidence 335666666666666666666665544432 12334555554
No 206
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.01 E-value=1.1e+02 Score=25.19 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=37.8
Q ss_pred cceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q psy13667 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQL-TKKGIEINEYKDKF 112 (144)
Q Consensus 58 ~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql-~~~~~el~e~~~k~ 112 (144)
+.++|..||.+|+.+. .+.|..+++.|..+-.+....+ ......+++|..++
T Consensus 67 ~~G~rFlgG~aVP~~~---~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~ 119 (257)
T PF11348_consen 67 KVGVRFLGGYAVPEDK---AEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRH 119 (257)
T ss_pred HcCCcccceeEcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5788999999998764 4556677777777776655554 66777777777764
No 207
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.86 E-value=66 Score=26.64 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=39.4
Q ss_pred eeeeecceehhccHhhH-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 60 CFRLIGGVLCEKTVKEV-----------------IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 60 ~yklvG~VLVe~t~~Ea-----------------~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
++...||+|+.+.++|+ ++...+++..|..+...+...+..++.++.+....+...
T Consensus 141 vA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 141 VALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHhccCcccccccccCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667887777766655 235567777777777777888888888887777777333
No 208
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.72 E-value=2.3e+02 Score=25.76 Aligned_cols=99 Identities=11% Similarity=0.207 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcccCCCcc-eeeeecce-ehhccHhhHHHHHHHhH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQE-------LTEHKIVLDTLKDLDGDRR-CFRLIGGV-LCEKTVKEVIPTLTTNR 84 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~q-------l~E~~~VleeL~~l~~d~~-~yklvG~V-LVe~t~~Ea~~~L~~r~ 84 (144)
..+...+..++.+...+...+..|... +.......+.|+.+..+-. +...+... ..=..+.+-...+.+++
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445555566677777777777777666 1112223333333332211 22222211 12222344444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 85 DQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 85 e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.|+.....+...+..+.+...+.+.++
T Consensus 393 eeie~eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554444
No 209
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.42 E-value=1.1e+02 Score=21.15 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
++-|...|++..+.+.+.+.++..|..+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 210
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.29 E-value=1.3e+02 Score=19.93 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=24.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.-+...++-++.|+..+-+-.+++..++.++..+..++
T Consensus 15 ~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 15 SRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666666655
No 211
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.28 E-value=90 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=31.4
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.++.+....+.++.+...++.+.+.+..++..+...-.++
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 56777778888888888888888888888877777666655
No 212
>PLN02320 seryl-tRNA synthetase
Probab=36.22 E-value=3.4e+02 Score=24.76 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
+.++-.+-++...+..++..|..+.+++..-+.. +.. .++ ...|..+...|...|..++.
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~-----------------~~~-~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG--KLE-----------------PSE-RQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhC-----------------CCC-HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666666666666655544432 111 111 23455555566666666666
Q ss_pred HHHHHHHHHHHHHHHh
Q psy13667 97 QLTKKGIEINEYKDKF 112 (144)
Q Consensus 97 ql~~~~~el~e~~~k~ 112 (144)
.+..++.++.++-..+
T Consensus 152 ~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 152 DLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666666555444
No 213
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=36.20 E-value=3.5e+02 Score=24.95 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIV 47 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~V 47 (144)
+....|+.|.+++.........|...+.....+
T Consensus 407 e~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~ 439 (543)
T COG1315 407 EIVERLKELTEEISLHEERLKKLTKLLVALVKV 439 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999988888888888887777776
No 214
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=36.13 E-value=1.1e+02 Score=27.08 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
.+++++..+||.+..++..+...+..-+..+......|+.|-.
T Consensus 130 ~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~~ 172 (386)
T COG3853 130 SSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLYE 172 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Confidence 5689999999999999999999999999999999999888743
No 215
>PRK02119 hypothetical protein; Provisional
Probab=36.07 E-value=1.3e+02 Score=19.98 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=25.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.-+...++.++.|+..+-+-.+++..+..++..+..++
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666677666666666666666666666655
No 216
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.82 E-value=2.3e+02 Score=22.68 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 27 QRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 27 ~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
+..|..+...+..-+...+.|-++|++|
T Consensus 45 ~~~L~~q~~s~Qqal~~aK~l~eEledL 72 (193)
T PF14662_consen 45 ITDLRKQLKSLQQALQKAKALEEELEDL 72 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444555555544
No 217
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=35.75 E-value=2.7e+02 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 23 LRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 23 lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
...+++.+..++..+.-++.+++.-+..++..
T Consensus 275 ~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~ 306 (391)
T smart00435 275 HEKSMEKLQEKIKALKYQLKRLKKMILLFEMI 306 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34567777888888888888888877766653
No 218
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.65 E-value=1.5e+02 Score=20.71 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 33 KLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 33 q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
....+...+.|...+++.... | ..+..+....|..++..|+..+..+...+..+...+.
T Consensus 52 ~lr~~G~sL~eI~~~l~~~~~-----------~----~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 52 CLRNTGMSIKDIKEYAELRRE-----------G----DSTIPERLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHcCCCHHHHHHHHHHHcc-----------C----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777766653221 1 1234566777888888888888887777777665554
No 219
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.29 E-value=1.2e+02 Score=23.46 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
..+..++..|..++..++.++..+.+.|.+++..+.--+
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888888888884444
No 220
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=35.05 E-value=1e+02 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-+..+++|+..++..+..+...++.+++++..+..++
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444444
No 221
>PRK10722 hypothetical protein; Provisional
Probab=34.81 E-value=1.1e+02 Score=25.29 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy13667 13 DEEVYNGFQNL----RAEQRQIATKLSELEQELTEHKIVLDTLKDLD 55 (144)
Q Consensus 13 ~q~~~~~~q~l----q~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 55 (144)
+.+.-..|+.| ..++..+.++...|+.++.....=||.|.+++
T Consensus 160 LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIE 206 (247)
T PRK10722 160 LAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIE 206 (247)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888 67888999999999999999888888887764
No 222
>KOG4010|consensus
Probab=34.81 E-value=1.6e+02 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
...|...+..++.+|-.|..-|..++.-..+++.++++..-.
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~ 87 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLK 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 346778888899999999999999999999999999887643
No 223
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.73 E-value=1.7e+02 Score=23.41 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcccCC-Ccceeeee--cceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 22 NLRAEQRQIATKLSELEQELTE--------HKIVLDTLKDLDG-DRRCFRLI--GGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E--------~~~VleeL~~l~~-d~~~yklv--G~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
+|+.++..|-.++..++..... -.+|..+|+.|=+ -+.-++-. |..-... -+..|.+-++.|+..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~----~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGK----NLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC----CHHHHHHHHHHHHHH
Confidence 4556666666666665555544 2556666655411 01111111 1111122 233455556666667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 91 INSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 91 i~~l~kql~~~~~el~e~~ 109 (144)
+..|+.-+...+.+++.++
T Consensus 176 V~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777777777777766654
No 224
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.67 E-value=1.2e+02 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=16.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
.+.+..|+++++.++.++..+...+.....++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444443
No 225
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.53 E-value=56 Score=28.58 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
.....-.+||+.++..++.++...+.++.+|+.++++
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~ 193 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGG 193 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3445567888999999999999999999999888865
No 226
>PRK06798 fliD flagellar capping protein; Validated
Probab=34.47 E-value=61 Score=28.67 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
|..|.+.|+.+|++++++++.++.+++..+..|
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l 409 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNI 409 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666665555554
No 227
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.37 E-value=2e+02 Score=23.22 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD 55 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 55 (144)
..++.++...|+++...+..+..+++.-..||+...+-|..-.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4556666677777777777777777766777766666555443
No 228
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.30 E-value=1.7e+02 Score=20.84 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
...+++++......++++...+....+++..+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444443333
No 229
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.02 E-value=1.2e+02 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=15.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
.+-..-|+.+++.+...|+.|+..+..+.
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~ka 112 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKA 112 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555555554444443
No 230
>KOG2150|consensus
Probab=33.94 E-value=3.9e+02 Score=24.86 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred CccHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQR------------QIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVI 77 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q------------~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~ 77 (144)
+-.+-..+.++|+|+.|+. .|+..|..+|......+.|-.+.+. +.|.-.|--.-+.. |=..
T Consensus 44 e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~Kt-----Ka~SkegL~~~~kl-DPkE 117 (575)
T KOG2150|consen 44 ESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEMKT-----KAFSKEGLSAAEKL-DPKE 117 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccchhhccccccC-ChHH
Confidence 3456677889999998874 6888888999999888888766543 55655553333222 3333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
..=.+-.++|...|..|+.|+...+.
T Consensus 118 kek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 118 KEKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777777777766665
No 231
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=33.85 E-value=1.6e+02 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+.+..+.+++.++
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L 80 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKL 80 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888877776666555555555555544
No 232
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=33.84 E-value=1.3e+02 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
..+|.++.+++.++.+|+- .-....++.|...+-++|
T Consensus 3 sLeP~iE~LInrInelQQa-------KKk~~EELgEa~~l~eaL 39 (134)
T PF15233_consen 3 SLEPQIEDLINRINELQQA-------KKKSSEELGEAQALWEAL 39 (134)
T ss_pred CccchHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHH
Confidence 3678899999999999982 233445566665555444
No 233
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.77 E-value=3.9e+02 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEH 44 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~ 44 (144)
+......|..+...+..++..|+.+++..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~ 183 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQE 183 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555433
No 234
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=33.67 E-value=74 Score=29.82 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
|..|.+.|+..++++++++++++.+|+.++..|..+.
T Consensus 598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QF 634 (661)
T PRK06664 598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKY 634 (661)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888877777774443
No 235
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=33.54 E-value=1.6e+02 Score=22.45 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+....+.+++..+
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 85 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARL 85 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888877777766666666666655
No 236
>PRK00846 hypothetical protein; Provisional
Probab=33.43 E-value=1.6e+02 Score=20.08 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13667 93 SLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 93 ~l~kql~~~~~el~e~~~k~ 112 (144)
+....+..+..++.-+..++
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 237
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.40 E-value=2.6e+02 Score=22.67 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=25.7
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.+.++...+...+.+...+.++...+..+..++++++..
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555556666667777777888888888877
No 238
>KOG4603|consensus
Probab=33.32 E-value=2.5e+02 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVL 48 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vl 48 (144)
..++.+-..+..|+.+.+.+.+..+-+++++.+....|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677788888888888888888888888887765
No 239
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=32.83 E-value=1.9e+02 Score=20.74 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcccCC--C------cceeeee-cceehhccHhhHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 42 TEHKIVLDTLKDLDG--D------RRCFRLI-GGVLCEKTVKEVIP-------TLTTNRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 42 ~E~~~VleeL~~l~~--d------~~~yklv-G~VLVe~t~~Ea~~-------~L~~r~e~le~~i~~l~kql~~~~~el 105 (144)
.|++...++|..|+. | ..|-|=. |.++-+..+.+.+- +-..=++.|..+|.=+.+++..+++++
T Consensus 12 aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql 91 (99)
T PF13758_consen 12 AEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQL 91 (99)
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666633 1 1233333 45555555666553 234457888889999999999999999
Q ss_pred HHHHHHh
Q psy13667 106 NEYKDKF 112 (144)
Q Consensus 106 ~e~~~k~ 112 (144)
.....++
T Consensus 92 ~~aE~kl 98 (99)
T PF13758_consen 92 EAAENKL 98 (99)
T ss_pred HHHHHhc
Confidence 8877664
No 240
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=32.76 E-value=1.3e+02 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
.++++-..+++.++.++..++.|+ -+|++.
T Consensus 43 ~Rv~~~~~~l~~i~~Ri~~~qaKi-~~l~gs 72 (297)
T PF11945_consen 43 ARVERNRERLQAIQQRIEVAQAKI-EKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 344444455555555555555555 455554
No 241
>KOG4302|consensus
Probab=32.74 E-value=4.4e+02 Score=25.00 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
.+.++-.+++.||++...=..+...+..++..+=.|| .+++...+ .-+-+-|+..+-......-..+++.|...+
T Consensus 161 kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L----g~~~~~~v-t~~~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL----GLDFSMTV-TDVEPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccch-hhhhhhhhhccCcccccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 92 NSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 92 ~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
+.|..+-..--.++..+..++ ..+
T Consensus 236 ~~l~~~k~qr~~kl~~l~~~~-~~L 259 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKLQDLRTKL-LEL 259 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH
No 242
>PF14282 FlxA: FlxA-like protein
Probab=32.38 E-value=1.5e+02 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=16.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
+.-+..|.+++..|...|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 66677777777777777765443
No 243
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.32 E-value=3.3e+02 Score=23.49 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVL 48 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vl 48 (144)
+..++..+|++||+.-....++..++..-.+.+-..+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI 41 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSI 41 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888887777777777776666555443
No 244
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.31 E-value=2.1e+02 Score=21.11 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=25.6
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-.+.......++..|...+..|.+.-.....++.+++.++
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~ 81 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRH 81 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456666777777777777777666666666777666666
No 245
>PHA01750 hypothetical protein
Probab=32.31 E-value=1.1e+02 Score=20.59 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++..|..+++++..+.+.++.+.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444443
No 246
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=32.09 E-value=1.1e+02 Score=21.99 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
.+-.+..++..+......|-+.+..++.+..|.+..|+.|+.
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888888888888876654
No 247
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.08 E-value=3.2e+02 Score=23.30 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
|++.-.+.|..|...|+++...|.++-+-+++|-..+||+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 4445556677888899999999999999999988888887
No 248
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.06 E-value=3.4e+02 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQE 40 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~q 40 (144)
+.++++...++....+++.+...+..+-..
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666655554444
No 249
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=32.03 E-value=1e+02 Score=22.51 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=21.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
|++..|......|+..+.+|++.++....++.++.++
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~ 37 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKK 37 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666666666666666666665555554443
No 250
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=31.95 E-value=79 Score=22.30 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 85 DQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 85 e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.++.++.++.+.+.....++..+....
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~ 58 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERA 58 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888875
No 251
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.79 E-value=31 Score=24.49 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=29.1
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+..|++.+..|...++.|..++..|..++..++.++..++... ..++
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~-~~l~ 66 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEE-ESLQ 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHH
Confidence 4467888888888888888888888888888888888876544 4443
No 252
>KOG4674|consensus
Probab=31.79 E-value=2.5e+02 Score=29.78 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhc----cHhhHHHHHHHhHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEK----TVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~----t~~Ea~~~L~~r~e~le 88 (144)
++++...++.+..++.-+...+.++.+++.++. .+++.|..+..-||.=-+=|+++ +..+ ..-|...+..|+
T Consensus 1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~---ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~-~~kL~~ei~~Lk 1320 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQEKV---AELKKLEEENDRWKQRNQDLLEKYKDSDKND-YEKLKSEISRLK 1320 (1822)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHH
Confidence 455555555555555555555555555555444 44555655655566555555544 1222 233444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++...+..+.++.+++..++.++
T Consensus 1321 ~el~~ke~~~~el~~~~~~~q~~~ 1344 (1822)
T KOG4674|consen 1321 EELEEKENLIAELKKELNRLQEKI 1344 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666443
No 253
>KOG3341|consensus
Probab=31.67 E-value=1.4e+02 Score=24.61 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=34.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
+.+.=+...+.++..+..+.+|+...+..+.+|-.+|+-.|+..
T Consensus 16 ~~ky~~~g~~l~e~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei~kn 59 (249)
T KOG3341|consen 16 AKKYKEVGTELAEQQLVQMSKQLEVFQEALEEFARKHKTEIRKN 59 (249)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444555677788888999999999999999999998777654
No 254
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.62 E-value=2e+02 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=15.2
Q ss_pred HHHHHhcccCCCcceeeeecce
Q psy13667 46 IVLDTLKDLDGDRRCFRLIGGV 67 (144)
Q Consensus 46 ~VleeL~~l~~d~~~yklvG~V 67 (144)
.+-..+--..|+..+|+++.+.
T Consensus 93 ~AR~~l~~~~~gEi~f~i~~~~ 114 (117)
T COG2919 93 RARSELGMSKPGEIFFRLVKPS 114 (117)
T ss_pred HHHHHhCCCCCCCEEEEecccc
Confidence 3444555667888999988764
No 255
>PRK12765 flagellar capping protein; Provisional
Probab=31.54 E-value=87 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
.|..|.+.|+..+++|++++..++.+|+.+...|.-+
T Consensus 529 ~l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~q 565 (595)
T PRK12765 529 SLTKYDESLTNEIKSLTTSKESTQELIDTKYETMANK 565 (595)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888888877776434
No 256
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.37 E-value=2.2e+02 Score=21.10 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=3.6
Q ss_pred CCcceee
Q psy13667 56 GDRRCFR 62 (144)
Q Consensus 56 ~d~~~yk 62 (144)
.+.+.||
T Consensus 82 ~~~r~yk 88 (126)
T PF09403_consen 82 SKVRWYK 88 (126)
T ss_dssp GGGSTTH
T ss_pred cchhHHH
Confidence 3445665
No 257
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=31.25 E-value=1.8e+02 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+.+..+.+++.++
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L 109 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRH 109 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888877766666666666555555
No 258
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.12 E-value=1.5e+02 Score=24.24 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
.-.|..+++.|..+|.+|..+++...-+++.+++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3466777777777777777777777777766654
No 259
>KOG3759|consensus
Probab=31.12 E-value=2.7e+02 Score=25.57 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=34.5
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+-+|+|+..+-.=...=+..++.|..||.+++.=++=++...
T Consensus 207 lr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 207 LRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677888887777776677778889999999888777777776
No 260
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.08 E-value=1.5e+02 Score=19.23 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+.+|+..++......+..+..+.+++.++..
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555554444
No 261
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=31.01 E-value=2.9e+02 Score=23.29 Aligned_cols=102 Identities=9% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C----CCcceeeeecceehhccHhhHHHHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-D----GDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-~----~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
..||++.+-...+..-+.-++.+..-+..|..-...+...+++...+ + .|..+=.-.|. ..+-..+-.+|..
T Consensus 55 ~lP~~l~~~~~~i~~~~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~---~~~S~~~~~~l~~ 131 (337)
T cd09234 55 ELPQDLVERCAALSVRPDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGK---RGSSIAHVTELKR 131 (337)
T ss_pred CCCHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCC---CCCchhhHHHHHH
Confidence 47888887777776654555666666666665555555555554333 1 12222222332 1344446788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++..+...+..-...=..+...+..+...+
T Consensus 132 ~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l 161 (337)
T cd09234 132 ELKKYKEAHEKASQSNTELHKAMNLHIANL 161 (337)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999998888888888888888877755
No 262
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.85 E-value=2e+02 Score=22.84 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=30.9
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++....++.+++.++.+++.+...+-.+..++.-+++..
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888887777765
No 263
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.58 E-value=1.6e+02 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13667 90 LINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~~ 109 (144)
+|+.+-+++..++..+.+..
T Consensus 126 e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 126 EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555544433
No 264
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.37 E-value=4.9e+02 Score=26.50 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+...++....++..++..+..++.++..++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~ 320 (1353)
T TIGR02680 287 RARDELETAREEERELDARTEALEREADALRTRL 320 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555
No 265
>PRK08724 fliD flagellar capping protein; Validated
Probab=30.36 E-value=1.1e+02 Score=28.85 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
|..|.+.|+..++++++++..++.+|+.++.+|.-+
T Consensus 615 I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~Q 650 (673)
T PRK08724 615 IRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAK 650 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888777776433
No 266
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=30.26 E-value=2.1e+02 Score=20.84 Aligned_cols=37 Identities=5% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++.....+..+.+++..+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l 65 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQL 65 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766666666555555555555
No 267
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.84 E-value=4.4e+02 Score=24.15 Aligned_cols=79 Identities=18% Similarity=0.393 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-------CCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH-------HHH
Q psy13667 29 QIATKLSELEQELTEHKIVLDTLKDLD-------GDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI-------NSL 94 (144)
Q Consensus 29 ~l~~q~~~Le~ql~E~~~VleeL~~l~-------~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i-------~~l 94 (144)
-|..+...|++....-...++-|++|. +| =||++ |=+-+.+-.+.+|.+-+..+.+.+ +.|
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed--KY~vi---LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetL 416 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIED--KYRVI---LEKNDIEKTLQNLQEALANTQKHLQESRNEKETL 416 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh--HhHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555566666555555555555553 23 25543 445555555555555544444444 445
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy13667 95 NEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 95 ~kql~~~~~el~e~~~k~ 112 (144)
.=+++.+....-.++++|
T Consensus 417 qlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 417 QLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 555555555555556666
No 268
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.65 E-value=4.1e+02 Score=23.75 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----------------------cceeee-----
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD-----------------------RRCFRL----- 63 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d-----------------------~~~ykl----- 63 (144)
++...-.++++|+.++..+...+..++.++.+...=++.++.-=.| +-+||+
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q ss_pred ----------ecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 64 ----------IGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 64 ----------vG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-..|..-.-...+.+.+.++++.|...+..|...-..+..+-.++....
T Consensus 133 ~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 133 PALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred chhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.54 E-value=1.6e+02 Score=19.08 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+--+.+.++..-+.....|...+..+.++|.+++.
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666677777777777766653
No 270
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.34 E-value=1.6e+02 Score=19.07 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=27.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+.-+...++.++.|+..+-+-.+++..++..+..+..++ ..+.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl-~~~~ 52 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL-RELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 344566677777777777777777777777777777777 4443
No 271
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.32 E-value=2e+02 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=30.4
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+....|+.+++.++.+++.+..++-.+..++.-|+++.
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888888888888887777766
No 272
>PRK07737 fliD flagellar capping protein; Validated
Probab=29.26 E-value=95 Score=27.89 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|.+.|...++++++++..++.+|+.++++|
T Consensus 441 ~~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 441 NQQFAIGKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777666666
No 273
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.03 E-value=1.6e+02 Score=24.12 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=14.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.|++.+-.....+..|...++.++..=-++=+|
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 274
>KOG0161|consensus
Probab=29.03 E-value=3.6e+02 Score=28.81 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCcceeeeecce
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD--GDRRCFRLIGGV 67 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d~~~yklvG~V 67 (144)
+...+++...++....+...+......|++++.+.+.-++.=+..- -++..-++.|..
T Consensus 991 Ee~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 991 EERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777888888888888877766665543332 223344555554
No 275
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.90 E-value=1.9e+02 Score=20.35 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.0
Q ss_pred HHhHHHHHHHHH
Q psy13667 81 TTNRDQLNTLIN 92 (144)
Q Consensus 81 ~~r~e~le~~i~ 92 (144)
..|+..++..++
T Consensus 48 ~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 48 DRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 276
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=28.81 E-value=2.3e+02 Score=20.51 Aligned_cols=37 Identities=5% Similarity=0.103 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...++.......+....+.+++..+
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l 56 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVIL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888877776666666655555555554
No 277
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=28.79 E-value=1.8e+02 Score=19.45 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 81 TTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 81 ~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.+.++.+..+.+.|..++...+.++...+..
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~~ 32 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKEE 32 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655544443
No 278
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=28.70 E-value=2.3e+02 Score=20.47 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 29 QIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 29 ~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
.++.....+...+.|...+++.... | ..+..+....|..+++.|+..+..+......+...+..|
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~~~~~-----------~----~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 48 RFILSARQLGFSLKDIKEILSHADQ-----------G----ESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhcc-----------C----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777776653211 1 112235566777777777777777777666666555444
Q ss_pred H
Q psy13667 109 K 109 (144)
Q Consensus 109 ~ 109 (144)
.
T Consensus 113 ~ 113 (133)
T cd04787 113 Q 113 (133)
T ss_pred H
Confidence 3
No 279
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=28.64 E-value=2.7e+02 Score=21.40 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=23.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.-..++..+...+...+..-...+..++.++..++..+
T Consensus 142 ~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 142 KDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 33455666666666666666666667777776666655
No 280
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.55 E-value=2.6e+02 Score=21.02 Aligned_cols=99 Identities=14% Similarity=0.253 Sum_probs=54.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCCcceeeeecceehhccHhhHH-HHHHHh
Q psy13667 14 EEVYNGFQ-NLRAEQRQIATKLSELEQELTEHKIVLDTLKDL--------DGDRRCFRLIGGVLCEKTVKEVI-PTLTTN 83 (144)
Q Consensus 14 q~~~~~~q-~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l--------~~d~~~yklvG~VLVe~t~~Ea~-~~L~~r 83 (144)
+..+.+|+ .+...++.|...+.+++..-++.......|... .|+..+|-. +..++..-+ -.++..
T Consensus 24 ~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~-----~s~~l~~~~~~~~e~~ 98 (146)
T PF08702_consen 24 QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQ-----YSKSLRKMIIYILETK 98 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHH-----HHHHHHHHHHHHHHHH
Confidence 34444443 556666666666666666666665555555433 122122221 122222222 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+......|.-|..-+.....+|.+|+..+-++++
T Consensus 99 i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 99 IINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566777777788888888888887755544
No 281
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.55 E-value=2.3e+02 Score=22.91 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
++++.+....+...+......+++|.+++..++.++.+++.+...
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 282
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=28.54 E-value=2.2e+02 Score=21.70 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...++..++...+-+..+.+++.++
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L 88 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQ 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888777666666666555555554
No 283
>PRK10698 phage shock protein PspA; Provisional
Probab=28.35 E-value=3.1e+02 Score=21.89 Aligned_cols=96 Identities=10% Similarity=0.209 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCCcceeeeecceeh-hccHhhHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD--------LDGDRRCFRLIGGVLC-EKTVKEVIPTLTT 82 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~--------l~~d~~~yklvG~VLV-e~t~~Ea~~~L~~ 82 (144)
-++++-..+..++..+-.++.....++.++.++..-.+..+. =++| |-=..|. +....+....|+.
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed-----LAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED-----LARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 466667777778888888888888888888887665554432 2222 1111122 2236667777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++.....+.+|..++..++.++.+++.+.
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888888776
No 284
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=28.25 E-value=2.3e+02 Score=20.43 Aligned_cols=13 Identities=0% Similarity=0.181 Sum_probs=5.9
Q ss_pred hhccHhhHHHHHH
Q psy13667 69 CEKTVKEVIPTLT 81 (144)
Q Consensus 69 Ve~t~~Ea~~~L~ 81 (144)
|++...-.+..|.
T Consensus 67 ~~qE~~k~m~~i~ 79 (107)
T PRK15365 67 VNQEAEKDLKKIV 79 (107)
T ss_pred HhHHHHHHHHHHH
Confidence 3444444444444
No 285
>KOG0980|consensus
Probab=27.98 E-value=6e+02 Score=25.15 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=21.0
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
++++...+|++.++.+.....+++...+...+.+..++..
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666666666666655555444444444444444333
No 286
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.95 E-value=5.5e+02 Score=24.65 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.1
Q ss_pred hHHHHH
Q psy13667 83 NRDQLN 88 (144)
Q Consensus 83 r~e~le 88 (144)
+...+.
T Consensus 594 ~~~~~~ 599 (908)
T COG0419 594 RLKELK 599 (908)
T ss_pred HHHHHH
Confidence 333333
No 287
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.94 E-value=2.4e+02 Score=20.80 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+.+....+++..+
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l 66 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNEREL 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887776655555555555555444
No 288
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.82 E-value=2.1e+02 Score=21.41 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=4.6
Q ss_pred HHHHHHhccc
Q psy13667 45 KIVLDTLKDL 54 (144)
Q Consensus 45 ~~VleeL~~l 54 (144)
..+..+|..|
T Consensus 96 k~l~~eL~~L 105 (169)
T PF07106_consen 96 KSLEAELASL 105 (169)
T ss_pred HHHHHHHHHH
Confidence 3344455544
No 289
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=27.51 E-value=1.1e+02 Score=23.12 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
-++.+++...+.+..++++|...-+..+.+...++.-+.-.+
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m 88 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAM 88 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777766666653333
No 290
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=27.36 E-value=2.5e+02 Score=20.47 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 31 ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 31 ~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+.....+...+.|...++.... ++ .+.+++...|..+++.|+..++.|......+...+..+.
T Consensus 50 I~~lr~~GfsL~eI~~ll~~~~------------~~----~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 50 ISSAQQAGFSLDEIRQLLPADA------------SN----WQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHcCCCHHHHHHHHhccc------------CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556667777777664210 11 234677788888888888888887777666655554443
No 291
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.30 E-value=2.6e+02 Score=22.19 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=23.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.....++.+++.++.+++.+...+-....+++-+++..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666666666666666666666554
No 292
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=27.18 E-value=1.7e+02 Score=26.61 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..|+.|.+|+..+++++.+++.++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999887
No 293
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.17 E-value=6.4e+02 Score=25.20 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 31 ATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 31 ~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
...+..+..++...+.-|+.|+. .+.-|--.| +---.-.-+.+|.+..+++.+...+.-|..+..+++.+.+....
T Consensus 312 ~~~~~~~~~~l~~~~~~L~~i~~---~~~~ye~~~-i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~ 387 (1201)
T PF12128_consen 312 NKELSALNADLARIKSELDEIEQ---QKKDYEDAD-IEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQ 387 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCC-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455444444444433 344442222 22233345677888888888888888888888888887777777
Q ss_pred Hhhhhh
Q psy13667 111 KFDIQL 116 (144)
Q Consensus 111 k~~i~~ 116 (144)
++....
T Consensus 388 ~l~~~~ 393 (1201)
T PF12128_consen 388 KLEEAF 393 (1201)
T ss_pred HHHHHH
Confidence 664443
No 294
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.15 E-value=2.5e+02 Score=21.13 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=25.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.=+...|++|.+.|...+...++.-.+.+....+++..+
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L 71 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAER 71 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667788888888877766666555555555555554
No 295
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.09 E-value=2.1e+02 Score=19.52 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDR 58 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~ 58 (144)
..++++-..|...++.|++++.++..-..-.++++.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~k 40 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKK 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence 45666667777777777777777766544455665443
No 296
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.04 E-value=4.2e+02 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.344 Sum_probs=21.4
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+...++.-+..|=.+|+..++.+-..+...+.++.+.+.+|
T Consensus 248 ~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 248 QDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544
No 297
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.92 E-value=2.1e+02 Score=23.17 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=35.1
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+....+.....+..+++.++.+++.+...+-.+..+++-+++..
T Consensus 34 ~~~~~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~ 77 (214)
T PRK14163 34 APAGDAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRV 77 (214)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555678888889999999998888888888888888776
No 298
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=26.87 E-value=2.5e+02 Score=20.25 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEH 44 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~ 44 (144)
.+..+.+-++|..+++.++++++.|..-.+-.
T Consensus 76 aqsfltqrqql~nqyqqlvs~~s~lq~n~nal 107 (125)
T PRK15352 76 AQSFLTQRQQLENQYQQLVSRRSELQKNFNAL 107 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888776554433
No 299
>PRK14151 heat shock protein GrpE; Provisional
Probab=26.76 E-value=2e+02 Score=22.36 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=25.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++...++.+++.++.+++.++..+-....+++-+++..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~ 57 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRA 57 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777776666666554
No 300
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=26.75 E-value=2.5e+02 Score=20.73 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...+....+.+..+.+++..+
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L 63 (159)
T PRK09173 27 IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888877666666665555555555
No 301
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.67 E-value=1.6e+02 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=10.3
Q ss_pred ehhccHhhHHHHHHHh
Q psy13667 68 LCEKTVKEVIPTLTTN 83 (144)
Q Consensus 68 LVe~t~~Ea~~~L~~r 83 (144)
++..+.+.+...+..|
T Consensus 6 ~ir~n~e~v~~~l~~R 21 (108)
T PF02403_consen 6 LIRENPEEVRENLKKR 21 (108)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHc
Confidence 3455666777777766
No 302
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.62 E-value=60 Score=25.49 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.9
Q ss_pred ecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 64 IGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 64 vG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
=|..|++-|-.+.+..|.++++.|+..+++..+
T Consensus 138 Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 138 CGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 489999999999999999999999988887654
No 303
>KOG0978|consensus
Probab=26.61 E-value=5.7e+02 Score=24.42 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehh
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe 70 (144)
-..|..|..+++.+..++.++-++..=+...+..|+.- .+.|..-+++.--+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq--~~~lt~~~~~l~~e 546 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ--ERGLTSNESKLIKE 546 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHhhhhhHHH
Confidence 34566677777777777777777766666666666544 34555555555443
No 304
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.59 E-value=2.5e+02 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...++..++...+.+..+.+++.++
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 79 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKL 79 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888887777776665555555555555444
No 305
>KOG4360|consensus
Probab=26.59 E-value=5.3e+02 Score=23.99 Aligned_cols=83 Identities=11% Similarity=0.212 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
+....++.+++++...|.+++..+.-.+..|.+=.++ .++.+..-.++-+.++.+++.
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee----------------------l~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE----------------------LDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------------------HHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444445554444444444444443333 345566667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 94 LNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 94 l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
+..++.+....+.+.++.+ -.++..
T Consensus 280 leDkyAE~m~~~~EaeeEL-k~lrs~ 304 (596)
T KOG4360|consen 280 LEDKYAECMQMLHEAEEEL-KCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhccC
Confidence 8888888888888877777 444443
No 306
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.55 E-value=1.6e+02 Score=20.01 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 86 QLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 86 ~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|+..++.+..++..++.++.+.+.-+
T Consensus 39 ~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 39 ELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555
No 307
>PHA02557 22 prohead core protein; Provisional
Probab=26.45 E-value=2.5e+02 Score=23.67 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=38.5
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.+|-|+-...+++..+..+++..+.+++++-.....+++.+....+.
T Consensus 131 hnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~ 177 (271)
T PHA02557 131 HNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKRE 177 (271)
T ss_pred hCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999998887777777777765543
No 308
>KOG1003|consensus
Probab=26.32 E-value=3.5e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 24 RAEQRQIATKLSELEQELTEHKIVL 48 (144)
Q Consensus 24 q~q~q~l~~q~~~Le~ql~E~~~Vl 48 (144)
-...+++-.....++.++.|....-
T Consensus 52 enr~~kdEE~~e~~e~qLkEAk~ia 76 (205)
T KOG1003|consen 52 ENRAQKLEEKMEAQEAQLKEAKHIA 76 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666664443
No 309
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.25 E-value=2.6e+02 Score=21.06 Aligned_cols=37 Identities=5% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...+++|.+.|...+...++...+-+..+.++..++
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 79 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888777776666555555555555444
No 310
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.25 E-value=2.6e+02 Score=21.08 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+-...+.+++.++
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888877776666665555555555544
No 311
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.22 E-value=4.4e+02 Score=22.98 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQI 30 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l 30 (144)
+..++.+++.++..+
T Consensus 252 l~~~l~~l~~~l~~l 266 (498)
T TIGR03007 252 LDGRIEALEKQLDAL 266 (498)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444444444433
No 312
>PF14182 YgaB: YgaB-like protein
Probab=26.19 E-value=2.2e+02 Score=19.56 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13667 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLT 99 (144)
Q Consensus 20 ~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~ 99 (144)
|+.|=.+.-..+.++=-|.+++.-|.-+-.+|..+..+ ..+.+|..+|.++++.++
T Consensus 2 F~~LV~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~e------------------------a~l~~i~~EI~~mkk~Lk 57 (79)
T PF14182_consen 2 FDKLVSEQMKTMDKLLFLQSELERCQEIEKELKELERE------------------------AELHSIQEEISQMKKELK 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhHHHHHHHHHHHHHHHH
Confidence 45555555566677778888888888888887777654 356778888888998888
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy13667 100 KKGIEINEYKDKFDIQL 116 (144)
Q Consensus 100 ~~~~el~e~~~k~~i~~ 116 (144)
.++.-+..-.... |+.
T Consensus 58 ~Iq~~Fe~QTeeV-I~s 73 (79)
T PF14182_consen 58 EIQRVFEKQTEEV-IRS 73 (79)
T ss_pred HHHHHHHHHHHHH-HHH
Confidence 8888887766666 543
No 313
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.10 E-value=3.4e+02 Score=21.68 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=49.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..+++.++-+ ..++..+..+..++..|+.++..+...+..... ..-...+.-|+..| +++-.+
T Consensus 11 ~p~~t~~d~~---~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-------------~~~~~~K~~Al~~L-K~KK~~ 73 (211)
T PTZ00464 11 TPKPTLEDAS---KRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-------------MTQSRHKQRAMQLL-QQKRMY 73 (211)
T ss_pred CCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhhhHHHHHHHHHH-HHHHHH
Confidence 3456655555 788888888888888888888877655443322 11122345556555 444555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 88 NTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~ 106 (144)
+..+.++..++..++.-..
T Consensus 74 E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 74 QNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6656665555555544443
No 314
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.94 E-value=3.3e+02 Score=22.62 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG 56 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~ 56 (144)
.++...+.+.|+.++..+.+....+++=.+||....+.|..-..
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 45566677778888888888888888888888888777765543
No 315
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=25.88 E-value=2e+02 Score=21.47 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCCCcceeeeecceeh--hccHhhHHHHHHHhHH
Q psy13667 24 RAEQRQIATKLSELEQELTEH-KIVLDTLKDLDGDRRCFRLIGGVLC--EKTVKEVIPTLTTNRD 85 (144)
Q Consensus 24 q~q~q~l~~q~~~Le~ql~E~-~~VleeL~~l~~d~~~yklvG~VLV--e~t~~Ea~~~L~~r~e 85 (144)
..+.+.+...+..+-+|+.+| ..|++-|+.+ ++++-+++|-+-= +-.+.+....+.+|++
T Consensus 60 eEEA~~ll~eL~~~asqL~~~~~~~~e~l~~l--e~k~~k~~~k~~e~ip~~i~~~i~y~~e~i~ 122 (127)
T PF14591_consen 60 EEEALQLLDELKSYASQLQEHYFRVRELLEDL--ERKIQKAIEKLREFIPPSIGDPIEYVKERIR 122 (127)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCT--T--------------HHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccCchhcCccHHHHHHHHH
Confidence 345556666777777888887 6777777877 4667777663211 3344555555555533
No 316
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=25.80 E-value=60 Score=21.95 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=33.3
Q ss_pred ceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 59 RCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 59 ~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
-+-+-+||..--+=+.||...+.+|.+.|+..+-.+++
T Consensus 38 F~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly~lEk 75 (76)
T PF09932_consen 38 FFIEELGPHFYNQGVQDAQAVLEERMEDLEEELYELEK 75 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Confidence 46677999999999999999999999999998877653
No 317
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.80 E-value=1.8e+02 Score=18.41 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
...+.+++.++..+..++..+..+..+.+.-++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888887777776666666
No 318
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=25.74 E-value=4.1e+02 Score=22.41 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=70.1
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C----CCcceeeeecceehhccHhhHHHHHH
Q psy13667 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-D----GDRRCFRLIGGVLCEKTVKEVIPTLT 81 (144)
Q Consensus 7 ~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-~----~d~~~yklvG~VLVe~t~~Ea~~~L~ 81 (144)
+..||++.+....+++- .-++.|...+..|..-..++...|++...+ + .|..+=.-.|.---...-..+-..|.
T Consensus 52 ~~lP~sl~~~~~~i~~~-gg~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~ 130 (339)
T cd09235 52 DTVPQSLLEKSRTVIEK-GGIQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLR 130 (339)
T ss_pred CCCCHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHH
Confidence 35888888888888653 446666666666666666666666664333 2 22222222344222333466668899
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.++..+..-++.-...=..+..++..+...+
T Consensus 131 ~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l 161 (339)
T cd09235 131 AEGSKYRTILDNAVQADKIVREKYESHREGI 161 (339)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999998888888889999888866
No 319
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.70 E-value=2.2e+02 Score=19.37 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIV 47 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~V 47 (144)
.+..|+.+++.+..++..+..++.-.+.-
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 320
>KOG4571|consensus
Probab=25.67 E-value=2.5e+02 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=35.1
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
+-+.....+|...++.|+.+=++|+.+...++++|..++.-+ +.+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli-~e~ 288 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI-LEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 344556677888888888888889999999999998888776 444
No 321
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.61 E-value=84 Score=19.72 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13667 88 NTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~ 108 (144)
..++++++++++..+++++++
T Consensus 47 r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666543
No 322
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.32 E-value=2.3e+02 Score=19.89 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 32 TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 32 ~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
.....+...+.|...+++.... | ..+.++....|..+++.|+.+++.+......+.
T Consensus 51 ~~lr~~G~sl~eI~~~l~~~~~-----------~----~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 51 RRAQALGFSLAEIRELLSLRDD-----------G----AAPCAEVRALLEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHCCCCHHHHHHHHHhhhc-----------C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666643221 0 123455666677777777777776655554443
No 323
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.28 E-value=2.1e+02 Score=18.95 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.-|.......+..+..+.+.+.....++..++..+
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444443
No 324
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=24.98 E-value=1.9e+02 Score=19.87 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
.+..+..++.....+|..++..+.+.+.-+.+++++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777766666666665
No 325
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=24.96 E-value=24 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=26.7
Q ss_pred cceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 58 ~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le 88 (144)
+-||++.++|||=.+.+||++-|.=++-++-
T Consensus 50 kla~k~G~~vlvf~dL~DAlevL~P~v~ll~ 80 (147)
T COG4080 50 KLAFKLGKPVLVFPDLDDALEVLRPDVTLLV 80 (147)
T ss_pred HHHHHhCCcEEEehhHHHHHHhcCCceEEEe
Confidence 5699999999999999999998877766654
No 326
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.73 E-value=2e+02 Score=18.39 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.4
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
.+-.+.+-..+++..-..+++.+...+.++...+..+
T Consensus 29 n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 29 NENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp STTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999999999999999998888765
No 327
>KOG4674|consensus
Probab=24.56 E-value=7.2e+02 Score=26.59 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec------------ceeh--hccHhhHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG------------GVLC--EKTVKEVIP 78 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG------------~VLV--e~t~~Ea~~ 78 (144)
..++-.+|..+.+.+..+..+...+..+++....-++.+.. ..++--+.++- ..+. +++.-+...
T Consensus 54 ~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~-~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le 132 (1822)
T KOG4674|consen 54 LSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSS-ERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLE 132 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666555544443322 11122222222 2333 344444555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+++.+...++++..++.......-++..+.
T Consensus 133 ~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~ 166 (1822)
T KOG4674|consen 133 RQKAELEALESENKDLNDQLKSSTKTLSELEARL 166 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666555555544444433
No 328
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.52 E-value=3.1e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+..|...++.|.+.+..+.+++..+++.|
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555
No 329
>PHA02096 hypothetical protein
Probab=24.52 E-value=98 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=31.0
Q ss_pred CcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667 57 DRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN 92 (144)
Q Consensus 57 d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~ 92 (144)
|..+|...|||++--+-+||..++.+-++.|+.-++
T Consensus 19 ~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylk 54 (103)
T PHA02096 19 SGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLK 54 (103)
T ss_pred cCcccccccceEEeccHHHhhhHHHHHHHHHHHHhc
Confidence 456789999999999999999999999888876655
No 330
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=24.45 E-value=1.1e+02 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcc
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELT-----EHKIVLDTLKD 53 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~-----E~~~VleeL~~ 53 (144)
..||+.+.-..++..|+.-++.|+.++..++..+. +.+..+..|..
T Consensus 43 ~~P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~ 93 (103)
T PF07361_consen 43 GKPPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDD 93 (103)
T ss_dssp TS-GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33777776666778888888888888888877544 34444444443
No 331
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.29 E-value=2.7e+02 Score=19.90 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++...+....+.++...+
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L 66 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQL 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888777766665555555555555544
No 332
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.25 E-value=2.7e+02 Score=19.87 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=21.3
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
+..++...+..+++.|+..+..|......+..
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (126)
T cd04785 76 SCAEADAIARAHLADVRARIADLRRLEAELKR 107 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776655555443
No 333
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=23.91 E-value=92 Score=24.63 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred eeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 61 FRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 61 yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+-.+||+|.+..-.-....+..++..++..+..+.+ ....++.++++.++
T Consensus 151 ~~~~G~~l~~~~~~~~~~~l~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~i 200 (205)
T PF04816_consen 151 ELEFGPVLLEKKDPLLKEYLQRKLRKLKRILQQLES--SQAQKKYEELKEEI 200 (205)
T ss_dssp HHHH-HHHHHHT-HHHHHHHHHHHHHHHHHHHHSHT--CHHHHHHHHHHHHH
T ss_pred HHHhCHHHHhccCHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHH
Confidence 346899999988888889999999888888887762 22333444444444
No 334
>KOG4643|consensus
Probab=23.88 E-value=5.4e+02 Score=25.96 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 25 AEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 25 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
.++..+.+.++.+..+.+-.++-.++++.+
T Consensus 212 ae~~klrqe~~e~l~ea~ra~~yrdeldal 241 (1195)
T KOG4643|consen 212 AEISKLRQEIEEFLDEAHRADRYRDELDAL 241 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 333333444444444444444455555444
No 335
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.86 E-value=1.8e+02 Score=17.80 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 32 TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 32 ~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
.....+...+.|....+ ++-. - =..+..++...+..+++.|+..|..+......+
T Consensus 8 ~~~r~lGfsL~eI~~~l-~l~~---------~-----~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 8 RRLRELGFSLEEIRELL-ELYD---------Q-----GDPPCADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHTT--HHHHHHHH-HHCC---------S-----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH-hccC---------C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777666 2211 1 123456667777777777777777766555443
No 336
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.86 E-value=2.6e+02 Score=21.38 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+...+..+.+++.++++++..+.+++.+++..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555444
No 337
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.81 E-value=3e+02 Score=20.14 Aligned_cols=90 Identities=14% Similarity=0.279 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
..=.++..++.++..+..++..+..++-..-.-.+++....... .....-+..|..|.+.+=.-+..-
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~------------~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEV------------EELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcch
Confidence 33344555555555555555555555544444444443332110 122333445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy13667 95 NEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 95 ~kql~~~~~el~e~~~k~~i~~ 116 (144)
....++++..+.+++.-|+.+|
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666655554443
No 338
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=23.78 E-value=4.5e+02 Score=22.20 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cCC------CcceeeeecceehhccHhhH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD------------LDG------DRRCFRLIGGVLCEKTVKEV 76 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~------------l~~------d~~~yklvG~VLVe~t~~Ea 76 (144)
..+.-|..-+.++ +...+..++.--.+...+|..|+. +++ +..|++..||+ ..+...
T Consensus 6 ~a~s~Y~erk~~l--v~~e~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~---~~l~~~ 80 (339)
T cd09238 6 KALSKYTEMVDEL--IRTEADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGL---AALEGE 80 (339)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccH---HHHHHH
Confidence 3344444444333 334466677766777777666532 222 23467777774 456778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
+..|.+-.......+..+...|..=..+-+.++.+|+-++...
T Consensus 81 l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~ 123 (339)
T cd09238 81 LPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRP 123 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 8888888888888999999999999999999999998766553
No 339
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.58 E-value=4.1e+02 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.....+......+...+..+..++.+++..+
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555544444444
No 340
>KOG3129|consensus
Probab=23.57 E-value=1.4e+02 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
....++..|..++.++|++++++-.||+.=
T Consensus 18 ~~~~~~~eLm~~K~eiE~qin~~~~vL~~~ 47 (231)
T KOG3129|consen 18 NTKSELKELMDKKTEIETQINELVEVLENN 47 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999999999999753
No 341
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=23.57 E-value=4.1e+02 Score=21.66 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCCC
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEH-KIVLDTLKDLDGD 57 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~-~~VleeL~~l~~d 57 (144)
.|..+.+++..+..+......+.....+|..+++|. +..+++++...+|
T Consensus 116 s~~~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~ 165 (217)
T COG1777 116 SPEGISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGD 165 (217)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 455678999999999999999999999999999997 4566777777665
No 342
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.57 E-value=2.6e+02 Score=19.38 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el 105 (144)
+++...+..+++.|+.++..+......+...+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777776666655443
No 343
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=23.54 E-value=2.6e+02 Score=19.38 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
.+...+.++.|+..+..+...-..+..++.+.+
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555566666666666666555555555543
No 344
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.39 E-value=3e+02 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
....+..+++.++.+++.+...+-....+++-+++..
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~ 69 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRA 69 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777666655
No 345
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.33 E-value=3.3e+02 Score=20.53 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 44 HKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 44 ~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~ 115 (144)
-+.+.++|+.+.++ .-=|..|-+-+=++.+--...++..+.-|..+.++.+.+.+.+..-+.......|++
T Consensus 24 ~e~~~dtLe~i~~~-~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g~~ 94 (162)
T PF05565_consen 24 EEAIADTLESIEDE-IEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAGIK 94 (162)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34555666665432 222444444455555555667777777777777777777777777777777665443
No 346
>PHA03155 hypothetical protein; Provisional
Probab=23.25 E-value=1.8e+02 Score=21.44 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred CccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHH
Q psy13667 1 MADAKKKTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTL 80 (144)
Q Consensus 1 ~~~~~~~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L 80 (144)
|||.. ..++.+++.+++++|+-+=..|-.++.+= .+|+. ++|-...++-.+...
T Consensus 1 mas~~---~~~tvEeLaaeL~kL~~ENK~LKkkl~~~----------------~~p~d-------~~LT~~qKea~I~s~ 54 (115)
T PHA03155 1 MASGR---ACADVEELEKELQKLKIENKALKKKLLQH----------------GNPED-------ELLTPAQKDAIINSL 54 (115)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHcc----------------CCCCc-------cccCHHHHHHHHHHH
Confidence 67643 46778899999888887776666655321 12332 446666666655555
Q ss_pred HHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 81 TTNRD-----QLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 81 ~~r~e-----~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
-.++. .|+..+...---+ ..+.++.+.-..+.++|.-
T Consensus 55 v~~Lt~~A~~KIe~kVrk~~~~~-vTk~q~~~al~~lt~Ridv 96 (115)
T PHA03155 55 VNKLTKKAEEKIRERVLKDLLPL-VSKNQCMEAIADIKYRIDV 96 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHhcCeeeEEe
Confidence 55543 2333332222111 2345666666777777764
No 347
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.14 E-value=2.8e+02 Score=19.54 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=18.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKK--GIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~--~~el~e~~~k~ 112 (144)
+-...|.++++..+.++..++..+..+ ...+.+++-.+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l 74 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLEL 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444445555555555555555555444 44444444333
No 348
>KOG3501|consensus
Probab=23.13 E-value=2e+02 Score=21.03 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehh-------ccHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13667 27 QRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE-------KTVKEVIPTLTTNRDQLNTLINSLNEQLT 99 (144)
Q Consensus 27 ~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe-------~t~~Ea~~~L~~r~e~le~~i~~l~kql~ 99 (144)
...+...+-..+....|+..|.++=.--..=.+.|=+-.-..|. .+..|.+..|.+.++|++..+...+..+.
T Consensus 26 i~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLr 105 (114)
T KOG3501|consen 26 IAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLR 105 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666542221112223222222222 23456666777777777766666555554
Q ss_pred HH
Q psy13667 100 KK 101 (144)
Q Consensus 100 ~~ 101 (144)
++
T Consensus 106 el 107 (114)
T KOG3501|consen 106 EL 107 (114)
T ss_pred HH
Confidence 43
No 349
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.11 E-value=1.2e+02 Score=25.97 Aligned_cols=12 Identities=0% Similarity=0.127 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQ 29 (144)
Q Consensus 18 ~~~q~lq~q~q~ 29 (144)
..+..|+..+..
T Consensus 186 ~a~~~yq~a~~e 197 (320)
T TIGR01834 186 RDWMEYQQAMAD 197 (320)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 350
>PHA03011 hypothetical protein; Provisional
Probab=23.08 E-value=2.5e+02 Score=20.46 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy13667 82 TNRDQLNTLINSLNEQLTK 100 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~ 100 (144)
+.+-++..++++|+.++..
T Consensus 99 d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 99 DEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677777777766543
No 351
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=23.07 E-value=2.7e+02 Score=22.26 Aligned_cols=44 Identities=9% Similarity=0.029 Sum_probs=34.8
Q ss_pred ehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 68 LCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 68 LVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.|++|+|+.-...+.|...++...++|.+.++....-+..+..-
T Consensus 4 ~~e~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~ 47 (224)
T cd07591 4 QVERTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSS 47 (224)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999988888888877776666655443
No 352
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.98 E-value=1.9e+02 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 30 IATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 30 l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
++.+|..++..+..+..=++.++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve 25 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVE 25 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 44556666666666665555554
No 353
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.96 E-value=6.8e+02 Score=24.05 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=23.0
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 6 KKTTKLTDEEVYNGFQNLRAEQRQIATKLS 35 (144)
Q Consensus 6 ~~~~~~~~q~~~~~~q~lq~q~q~l~~q~~ 35 (144)
+.+.||....+-.++++|+.+...+..+++
T Consensus 466 ~~~~pp~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 466 CPPSPPSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888888888888877776654
No 354
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=22.93 E-value=3.7e+02 Score=20.98 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 54 (144)
+.-+....+..+.+.+...|..++.....-+.+....+..+..-
T Consensus 32 wk~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 75 (177)
T PF03234_consen 32 WKHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKE 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456666666666666666666666666666666555555443
No 355
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.92 E-value=3e+02 Score=21.80 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=28.9
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...-...++..++.++..++.+...+-.+..++.-+++++
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~ 76 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRY 76 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777777777777777777665
No 356
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.85 E-value=2.7e+02 Score=22.42 Aligned_cols=34 Identities=9% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.|+.+++.++.+++.+...+-.+..+++-+++..
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554443
No 357
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=22.72 E-value=2.8e+02 Score=19.51 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccH----hhHHHHHHHhHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV----KEVIPTLTTNRDQLN 88 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~----~Ea~~~L~~r~e~le 88 (144)
+.....+|..|..++..+.....+|++++.. ++++..=|.-|.-|+-+=.. +-.-..-..|-++|-
T Consensus 17 F~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~----------l~~~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~ 86 (101)
T PF07303_consen 17 FNDDYDEYKELHAEVDAVSRRFQELDSELKR----------LPPGSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLH 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------S-TTSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 4555667777777777777777777666543 34455555555433332221 223344556666666
Q ss_pred HHHHHHHHHHHH
Q psy13667 89 TLINSLNEQLTK 100 (144)
Q Consensus 89 ~~i~~l~kql~~ 100 (144)
..|.-+...+.+
T Consensus 87 ~KL~HIK~~I~~ 98 (101)
T PF07303_consen 87 NKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 358
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=22.72 E-value=2.7e+02 Score=22.02 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy13667 13 DEEVYNGFQNLRA----EQRQIATKLSELEQELTEHKIVLDTLKDLD 55 (144)
Q Consensus 13 ~q~~~~~~q~lq~----q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 55 (144)
+.+.-..|+.||+ ++..|.++...|+.++.....=||.|.+++
T Consensus 114 L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIE 160 (179)
T PF13942_consen 114 LSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIE 160 (179)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4455667888886 577899999999999999999999988774
No 359
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=22.71 E-value=1.1e+02 Score=21.56 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=29.5
Q ss_pred CcceeeeecceehhccHhhHHHHHHHhHHHHHH-HHHHHHHHH
Q psy13667 57 DRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT-LINSLNEQL 98 (144)
Q Consensus 57 d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~-~i~~l~kql 98 (144)
|..+++|.|-| -..++-|....|.+|...+.. .-+....++
T Consensus 8 n~EL~kmaG~v-~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~ 49 (93)
T PF06518_consen 8 NEELIKMAGKV-DPKDVPDYKMEIHKRLKKMKEKEAKDFKKQF 49 (93)
T ss_dssp HHHHHHTTTTS--GGGHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44688899988 888999999999999997776 444433333
No 360
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.71 E-value=2.5e+02 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.+..+.+.++..++.+...+..+++++..+++++ -+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEI-ERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence 3455667777777777777777777777777777 44443
No 361
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.68 E-value=1.3e+02 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy13667 84 RDQLNTLINSLNEQL 98 (144)
Q Consensus 84 ~e~le~~i~~l~kql 98 (144)
++.|+.+|..|+.++
T Consensus 98 v~~L~~RI~~Le~~l 112 (118)
T TIGR01837 98 IEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 362
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.61 E-value=3.3e+02 Score=23.29 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
.++...-++..++..=-..+.+.+.-|+.++.+ ||.|+-|+=|+.|-......=..+...|..-
T Consensus 73 ~iRkrv~~i~Nk~e~dF~~l~~yNdYLE~vEdi-----i~nL~~~~d~~~te~~l~~y~~~n~~~I~~n 136 (309)
T TIGR00570 73 DIRKRVLKIYNKREEDFPSLREYNDYLEEVEDI-----VYNLTNNIDLENTKKKIETYQKENKDVIQKN 136 (309)
T ss_pred HHHHHHHHHHccchhccCCHHHHHHHHHHHHHH-----HHHhhcCCcHHHHHHHHHHHHHHhHHHHHHH
Confidence 455555555555555455888888888888775 9999999999988888887777777777644
No 363
>KOG1029|consensus
Probab=22.58 E-value=7.6e+02 Score=24.44 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS 93 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~ 93 (144)
++++++.+.-|...-.+..+..+|+.++.-.+-=+..|+.-=-|-+| =-.|...++..+.+.++..-.+|..
T Consensus 419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~--------~~tt~kt~ie~~~~q~e~~isei~q 490 (1118)
T KOG1029|consen 419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV--------DITTQKTEIEEVTKQRELMISEIDQ 490 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee--------ccchHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444445555555555544444444443321112111 1245667777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy13667 94 LNEQLTKKGIEINEY 108 (144)
Q Consensus 94 l~kql~~~~~el~e~ 108 (144)
|..+|++.+.++..+
T Consensus 491 lqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 491 LQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777776666544
No 364
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.42 E-value=3.7e+02 Score=20.70 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=18.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++.+....+.++.+..++-.|.=++..+++++..++..+
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 365
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=22.23 E-value=3e+02 Score=19.64 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 33 KLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 33 q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
....+...+.|...+++.... ++ .+..++...|..+++.|+..+..|......+..
T Consensus 52 ~lr~~G~sL~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~ 107 (127)
T cd01108 52 RARDLGFSLEEIRELLALWRD--PS-------------RASADVKALALEHIAELERKIAELQAMRRTLQQ 107 (127)
T ss_pred HHHHcCCCHHHHHHHHHHHhC--CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666776666643221 11 234556667777777777777776655555443
No 366
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=22.22 E-value=60 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.5
Q ss_pred ecceehhccHhhHHHHHHHhHHHHH
Q psy13667 64 IGGVLCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 64 vG~VLVe~t~~Ea~~~L~~r~e~le 88 (144)
=|++|+.-|-.+.+..|+++++.|+
T Consensus 134 Cg~~L~~~dn~~~i~~l~~~i~~l~ 158 (158)
T TIGR00373 134 CGAMLDYLDNSEAIEKLEEQIKFLK 158 (158)
T ss_pred CCCEeeeccCHHHHHHHHHHHHhhC
Confidence 5899999999999999999998873
No 367
>KOG0994|consensus
Probab=22.12 E-value=5.3e+02 Score=26.72 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=21.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEH 44 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~ 44 (144)
...+.++...+..|+.+++.+...+.++|..|+.+
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi 1258 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEEETLSDI 1258 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 34456666666666666666666666666655543
No 368
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.09 E-value=3.4e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...+++|.+.|...++..++.-.+.+....+++..+
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l 69 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLL 69 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777765555444444444444433
No 369
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.93 E-value=3.6e+02 Score=20.38 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...+++|.+.|...+...++...+.+....+++..+
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKL 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776666655555555555555444
No 370
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.87 E-value=2.8e+02 Score=19.20 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...|...++.|...+..|+..-..+..++.++-.-.
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesn 63 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESN 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 577888888888888888888888888888776654
No 371
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.86 E-value=2.1e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=12.8
Q ss_pred ccCCCccHHHHHHHHHHHHHHH
Q psy13667 6 KKTTKLTDEEVYNGFQNLRAEQ 27 (144)
Q Consensus 6 ~~~~~~~~q~~~~~~q~lq~q~ 27 (144)
+.+++..+..+..++..|+.++
T Consensus 84 ~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 84 NPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666643
No 372
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.82 E-value=1.4e+02 Score=19.16 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.4
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQ 97 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kq 97 (144)
+.++.+|+.|+=-|..+|++|..+
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888999998888888888654
No 373
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=21.77 E-value=3.3e+02 Score=20.67 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=34.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+|+-|.|..-+..++..+.++......+..+.+=.+..+
T Consensus 59 ~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL 98 (153)
T PF08287_consen 59 RDEIEPQINHLLDKAEKHLEKLQRREETLKAKCELQQGRL 98 (153)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999999999988555555
No 374
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=21.75 E-value=1.4e+02 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIA 31 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~ 31 (144)
|.++.++..|+.+|.+++...
T Consensus 33 ~e~~~l~~~f~~~q~~~~~~q 53 (108)
T PF06133_consen 33 PEAQKLIEEFQKLQQELQNAQ 53 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888876543
No 375
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.52 E-value=6.2e+02 Score=22.98 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
.+.|+..++=+..+|+..++++++..
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444554444444433
No 376
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.51 E-value=3.1e+02 Score=19.52 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...|.|...-+++.+.+...+++++++.+.+
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555544555555555777777777665
No 377
>PRK11281 hypothetical protein; Provisional
Probab=21.40 E-value=8.5e+02 Score=24.55 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
+.+....+++...+.+++.....++.+...-+++++.
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3444455556666777777777788888777777776
No 378
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.29 E-value=2.5e+02 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD 57 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 57 (144)
..|...|+..+..-..||.++.|-+....++..|.++
T Consensus 3 eD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE 39 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDEKENLREEVQRLKDE 39 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666777666655555555555444
No 379
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.26 E-value=5.4e+02 Score=22.22 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=9.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q psy13667 81 TTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 81 ~~r~e~le~~i~~l~kql~~~ 101 (144)
++++..++..+.++++.+.+.
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554444443
No 380
>PRK14161 heat shock protein GrpE; Provisional
Probab=21.18 E-value=3.5e+02 Score=21.07 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
....+++.++.+++.+...+-....++.-+++.+
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455444555555444443
No 381
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=21.14 E-value=3.8e+02 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=21.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
.-....+..++..|+.+|+.++.++..++..+...
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~q 226 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQ 226 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777776666666655554443
No 382
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.14 E-value=3.2e+02 Score=19.48 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 30 IATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 30 l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
++.....+-..+.|...+++... + .+..++...+..+++.|+..+..|......+.
T Consensus 48 ~I~~l~~~G~sl~eI~~~l~~~~----~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 103 (124)
T TIGR02051 48 FIKRAQELGFSLEEIGGLLGLVD----G-------------THCREMYELASRKLKSVQAKMADLLRIERLLE 103 (124)
T ss_pred HHHHHHHCCCCHHHHHHHHhccc----C-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666677666664211 1 23456677777777777777777665554443
No 383
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.11 E-value=3.3e+02 Score=21.21 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=20.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
+.++...+..+++.+...++.+...+..+..++...
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555555555555544
No 384
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=21.00 E-value=3.2e+02 Score=19.95 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 32 TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 32 ~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
.....+...+.|...+++.... ++ .+..++...+.+++..|+..|..|......+..
T Consensus 51 ~~lr~~G~sl~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T PRK10227 51 RQARQVGFNLEESGELVNLFND--PQ-------------RHSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_pred HHHHHCCCCHHHHHHHHHhhcc--CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666653221 11 233455556666666666666666655555443
No 385
>COG4024 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.87 E-value=1.8e+02 Score=23.44 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHHhcccCCCcceeeeecceehhccHhhHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQE---LTE----------HKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPT 79 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~q---l~E----------~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~ 79 (144)
.++.-..+=.++.-+..+..--+-.+-+ +.| |..+.+.|.+-.+|+.+.-..|+ |+.-|..++-|+
T Consensus 66 A~EfcrklIa~~e~l~~ILa~fGveee~~~~~~e~~~g~l~IV~n~~~~K~L~k~~v~a~~v~t~G~-L~~eDmR~Inp~ 144 (218)
T COG4024 66 AQEFCRKLIALDEILRSILALFGVEEETERDLDELFKGSLLIVVNGRERKALRKELVDAPIVQTGGP-LVPEDMRKINPN 144 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhccccHHHHhcCCEEEEEChHHHHHHHHhCCCCceeeeCCC-CCHHHHHHhCCC
Confidence 4444444555666666665555444443 333 35667777777788888877777 888888888777
Q ss_pred HHH-hHHHHHHHHHHHHHH
Q psy13667 80 LTT-NRDQLNTLINSLNEQ 97 (144)
Q Consensus 80 L~~-r~e~le~~i~~l~kq 97 (144)
|=+ -++.|.+.++.+.+.
T Consensus 145 ~PEkaleGl~KkvE~aR~~ 163 (218)
T COG4024 145 LPEKALEGLVKKVERARRE 163 (218)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 643 344444444444433
No 386
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=20.84 E-value=2.1e+02 Score=25.02 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q psy13667 79 TLTTNRDQLNTLINS------LNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 79 ~L~~r~e~le~~i~~------l~kql~~~~~el~e~~~k~ 112 (144)
++++++..|+.++.+ .+.-+-.+..+|++++.++
T Consensus 3 tieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El 42 (365)
T COG1163 3 TIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREEL 42 (365)
T ss_pred CHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 467788888888876 5566777778888888888
No 387
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.62 E-value=3.6e+02 Score=19.97 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+...|++|.+.|...+...++.-.+.+....+++..+
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l 69 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766655555555555544444
No 388
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.53 E-value=3.6e+02 Score=20.91 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
......++.|+.+++.+...++.+..+++-|.+++
T Consensus 75 ~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~ 109 (157)
T COG3352 75 QDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 33444445555555555555555555555444444
No 389
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.44 E-value=3.2e+02 Score=19.34 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..|...+.|.+.+-.-|.+.+.+++++=..+...+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL 38 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEEL 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666666666555555544
No 390
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=20.33 E-value=3.1e+02 Score=20.81 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=38.0
Q ss_pred eehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 67 VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 67 VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+-+-+.++.++.++.+-++.|+..++-+..+-+++-.+-+.+.+.+|.+..
T Consensus 23 i~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~ 73 (139)
T COG4768 23 IITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVA 73 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345566777777788888888888888877777777777777777766654
No 391
>KOG0972|consensus
Probab=20.28 E-value=3.3e+02 Score=23.56 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcc-cCCCcceeeeecc------eehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 41 LTEHKIVLDTLKD-LDGDRRCFRLIGG------VLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 41 l~E~~~VleeL~~-l~~d~~~yklvG~------VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
.-|.++|+=-|+- +..|++=||+==. -=|++.++++.+.|.+=...|...+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKAL 261 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 3456666665542 3566666664211 1134445555554444333333333
No 392
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.27 E-value=4.2e+02 Score=20.52 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=32.4
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+..+.+..+...+..+...-.++..++.....++.+|..+...-+..
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555666666778888888888888888887655554
No 393
>PRK13676 hypothetical protein; Provisional
Probab=20.22 E-value=3e+02 Score=19.21 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=17.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIA 31 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~ 31 (144)
-|..+.++.+|+..|.+++...
T Consensus 35 d~~a~~li~~F~~~q~~~~~~q 56 (114)
T PRK13676 35 DEEAKKLFDEFRALQLEIQQKQ 56 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999886443
No 394
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.16 E-value=1e+02 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
+++.|+++|+.|++++.++.+++++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 56666666666666655555555443
No 395
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.15 E-value=5.6e+02 Score=21.95 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 24 RAEQRQIATKLSELEQELT 42 (144)
Q Consensus 24 q~q~q~l~~q~~~Le~ql~ 42 (144)
+.++..|.++...+..+..
T Consensus 59 ~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 59 QQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444333
No 396
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.09 E-value=2.4e+02 Score=18.32 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 21 QNLRAEQRQIATKLSELEQELTE 43 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E 43 (144)
.++..+++.+.+++..++.+-.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~ 49 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRD 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 397
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.02 E-value=4.5e+02 Score=20.86 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
..++.|.......-.++..|+.++.+.....+...
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666665544
Done!