Query psy13667
Match_columns 144
No_of_seqs 130 out of 534
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:21:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 99.9 1.1E-24 3.8E-29 154.1 14.2 103 11-113 1-103 (107)
2 2zqm_A Prefoldin beta subunit 99.9 1.8E-24 6E-29 155.0 15.3 109 8-116 3-111 (117)
3 2zdi_C Prefoldin subunit alpha 99.5 2.8E-13 9.5E-18 101.4 12.9 111 8-119 6-141 (151)
4 1fxk_C Protein (prefoldin); ar 99.4 2E-11 6.7E-16 89.2 13.9 105 12-116 2-129 (133)
5 3aei_A Prefoldin beta subunit 98.7 7.1E-07 2.4E-11 60.8 12.0 89 22-110 8-96 (99)
6 1l8d_A DNA double-strand break 96.8 0.062 2.1E-06 37.1 13.1 99 12-113 4-102 (112)
7 2zqm_A Prefoldin beta subunit 94.4 0.4 1.4E-05 32.9 9.1 93 13-108 15-110 (117)
8 1fxk_A Prefoldin; archaeal pro 93.3 0.62 2.1E-05 31.5 8.4 92 13-107 10-104 (107)
9 2pnv_A Small conductance calci 88.2 0.85 2.9E-05 27.1 4.3 34 73-106 7-40 (43)
10 1fxk_C Protein (prefoldin); ar 87.5 0.53 1.8E-05 33.3 3.7 94 19-112 2-118 (133)
11 3swy_A Cyclic nucleotide-gated 84.3 4.2 0.00014 24.3 6.0 39 79-117 2-40 (46)
12 2yny_A General control protein 81.9 4.7 0.00016 28.2 6.4 51 58-110 54-104 (106)
13 3nmd_A CGMP dependent protein 81.1 6.8 0.00023 25.6 6.5 45 73-118 21-68 (72)
14 2dfs_A Myosin-5A; myosin-V, in 80.6 26 0.00087 33.1 12.8 41 70-110 1011-1051(1080)
15 3na7_A HP0958; flagellar bioge 79.0 20 0.0007 27.7 11.4 33 19-51 91-123 (256)
16 2dq0_A Seryl-tRNA synthetase; 77.8 32 0.0011 29.3 12.0 78 16-112 29-106 (455)
17 3qne_A Seryl-tRNA synthetase, 77.8 33 0.0011 29.7 11.7 77 17-112 32-108 (485)
18 3efg_A Protein SLYX homolog; x 77.5 8.8 0.0003 25.1 6.3 48 70-118 9-56 (78)
19 3oja_B Anopheles plasmodium-re 76.9 30 0.001 29.2 11.3 36 16-51 454-489 (597)
20 1ic2_A Tropomyosin alpha chain 75.9 13 0.00046 24.0 11.2 74 15-110 3-76 (81)
21 1go4_E MAD1 (mitotic arrest de 75.9 17 0.00057 25.1 9.0 76 19-99 13-92 (100)
22 3swf_A CGMP-gated cation chann 75.3 9 0.00031 25.1 5.8 38 79-116 4-41 (74)
23 3ghg_A Fibrinogen alpha chain; 75.1 22 0.00074 31.4 9.8 46 72-117 107-159 (562)
24 2zdi_C Prefoldin subunit alpha 73.7 2.7 9.3E-05 30.3 3.3 92 18-112 9-128 (151)
25 1m1j_C Fibrinogen gamma chain; 73.6 41 0.0014 28.5 11.1 102 13-117 25-132 (409)
26 4fla_A Regulation of nuclear P 70.9 28 0.00096 25.4 9.5 92 7-112 18-130 (152)
27 1m1j_B Fibrinogen beta chain; 70.2 52 0.0018 28.3 12.1 30 81-110 167-196 (464)
28 3ol1_A Vimentin; structural ge 68.2 27 0.00093 24.2 10.1 87 18-112 20-106 (119)
29 3ghg_A Fibrinogen alpha chain; 67.4 17 0.00057 32.1 7.3 23 83-105 132-154 (562)
30 3swk_A Vimentin; cytoskeleton, 66.6 20 0.00067 23.7 6.1 80 20-107 2-81 (86)
31 3lss_A Seryl-tRNA synthetase; 66.0 57 0.002 28.1 10.5 36 17-52 36-71 (484)
32 3mq9_A Bone marrow stromal ant 65.1 57 0.002 26.8 11.9 69 23-109 402-470 (471)
33 3oja_B Anopheles plasmodium-re 64.3 65 0.0022 27.2 12.0 44 74-117 536-579 (597)
34 3nmd_A CGMP dependent protein 63.7 21 0.00071 23.2 5.6 39 13-51 21-59 (72)
35 3mq7_A Bone marrow stromal ant 63.2 38 0.0013 24.1 10.9 74 21-112 28-101 (121)
36 1aq5_A Matrilin-1, CMP, cartil 63.0 10 0.00034 22.8 3.7 31 68-98 16-46 (47)
37 2dq3_A Seryl-tRNA synthetase; 62.8 36 0.0012 28.5 8.5 78 16-112 28-105 (425)
38 1t3j_A Mitofusin 1; coiled coi 62.7 26 0.00089 23.9 6.2 43 70-112 42-94 (96)
39 2l5g_B Putative uncharacterize 62.6 21 0.00071 20.9 5.5 32 80-111 7-38 (42)
40 1wle_A Seryl-tRNA synthetase; 61.3 80 0.0027 27.2 11.1 84 18-112 70-153 (501)
41 3gp4_A Transcriptional regulat 59.7 32 0.0011 24.3 6.7 63 35-112 56-118 (142)
42 2w6b_A RHO guanine nucleotide 59.6 28 0.00097 21.5 6.5 45 66-110 1-45 (56)
43 2wt7_B Transcription factor MA 59.5 34 0.0012 23.1 6.3 39 74-112 47-85 (90)
44 1rtm_1 Mannose-binding protein 58.5 31 0.0011 23.6 6.4 55 25-82 4-58 (149)
45 1i84_S Smooth muscle myosin he 58.1 1.1E+02 0.0037 28.9 11.6 25 18-42 864-888 (1184)
46 2yy0_A C-MYC-binding protein; 55.8 31 0.0011 20.8 5.1 36 7-42 15-50 (53)
47 2pnv_A Small conductance calci 55.3 17 0.0006 21.3 3.7 21 78-98 19-39 (43)
48 3uul_A Utrophin; spectrin repe 54.9 40 0.0014 21.8 10.2 35 76-110 79-113 (118)
49 1s35_A Beta-I spectrin, spectr 54.4 57 0.002 23.4 8.9 32 7-38 29-60 (214)
50 3gpv_A Transcriptional regulat 54.1 28 0.00095 24.8 5.5 42 71-112 91-132 (148)
51 1t2k_D Cyclic-AMP-dependent tr 53.7 35 0.0012 20.7 6.5 40 73-112 20-59 (61)
52 3uun_A Dystrophin; triple heli 53.4 43 0.0015 21.6 9.7 38 74-111 77-114 (119)
53 3hnw_A Uncharacterized protein 53.1 59 0.002 23.2 10.2 13 19-31 69-81 (138)
54 2wuj_A Septum site-determining 49.3 21 0.00072 21.7 3.6 35 70-104 22-56 (57)
55 3a2a_A Voltage-gated hydrogen 49.2 45 0.0015 20.6 5.8 48 65-112 1-48 (58)
56 1q08_A Zn(II)-responsive regul 47.7 44 0.0015 21.5 5.4 63 32-108 10-72 (99)
57 1hjb_A Ccaat/enhancer binding 47.5 52 0.0018 21.9 5.7 39 78-117 39-77 (87)
58 2v71_A Nuclear distribution pr 47.2 91 0.0031 23.6 10.4 24 23-46 22-45 (189)
59 3t97_C Nuclear pore glycoprote 47.2 51 0.0017 20.7 5.3 42 12-53 13-54 (64)
60 1deq_A Fibrinogen (alpha chain 45.9 1.4E+02 0.0046 25.3 11.8 43 73-115 111-160 (390)
61 3efg_A Protein SLYX homolog; x 44.6 62 0.0021 20.9 6.0 37 76-112 22-58 (78)
62 3vkg_A Dynein heavy chain, cyt 44.5 1.8E+02 0.0062 31.0 11.4 44 71-114 2010-2053(3245)
63 3kqg_A Langerin, C-type lectin 44.4 52 0.0018 23.2 5.8 23 57-82 57-79 (182)
64 3tnu_B Keratin, type II cytosk 43.7 79 0.0027 21.9 11.1 27 17-43 42-68 (129)
65 1i84_S Smooth muscle myosin he 41.8 1E+02 0.0036 29.0 8.7 28 16-43 869-896 (1184)
66 1buu_A Protein (mannose-bindin 41.5 80 0.0027 22.1 6.4 56 17-82 22-77 (168)
67 2yko_A LINE-1 ORF1P; RNA-bindi 41.5 72 0.0025 25.1 6.4 49 73-121 11-62 (233)
68 1l8d_A DNA double-strand break 39.7 81 0.0028 20.9 9.1 89 12-106 11-102 (112)
69 1jnm_A Proto-oncogene C-JUN; B 39.2 52 0.0018 20.0 4.4 35 75-109 22-56 (62)
70 2l5g_B Putative uncharacterize 38.8 58 0.002 19.0 5.7 34 14-47 5-38 (42)
71 2yy0_A C-MYC-binding protein; 38.7 63 0.0022 19.4 4.9 28 85-112 22-49 (53)
72 2ke4_A CDC42-interacting prote 38.5 90 0.0031 21.1 7.3 29 74-102 61-89 (98)
73 3ibp_A Chromosome partition pr 38.4 92 0.0032 25.4 6.8 47 9-55 8-54 (302)
74 2xdj_A Uncharacterized protein 38.3 83 0.0028 20.6 6.1 37 76-112 21-57 (83)
75 3kin_B Kinesin heavy chain; mo 37.7 59 0.002 22.4 5.0 31 79-109 86-116 (117)
76 3na7_A HP0958; flagellar bioge 37.4 1.4E+02 0.0047 22.9 12.6 44 9-52 88-131 (256)
77 2wt7_A Proto-oncogene protein 36.8 72 0.0025 19.5 6.5 40 73-112 21-60 (63)
78 2pih_A Protein YMCA; regulate 36.0 74 0.0025 22.8 5.4 22 11-32 40-61 (151)
79 2oa5_A Hypothetical protein BQ 36.0 26 0.00088 24.6 2.7 32 1-35 1-32 (110)
80 4dci_A Uncharacterized protein 35.9 84 0.0029 23.0 5.7 42 65-106 19-60 (150)
81 1k1f_A Breakpoint cluster regi 35.7 68 0.0023 20.6 4.5 34 84-118 28-61 (72)
82 3vkg_A Dynein heavy chain, cyt 34.9 3.2E+02 0.011 29.2 11.5 42 71-112 2001-2044(3245)
83 1aa0_A Fibritin, gpwac E; bact 34.9 1.1E+02 0.0039 21.2 6.1 45 65-109 40-84 (113)
84 1u4q_A Spectrin alpha chain, b 34.7 1.3E+02 0.0046 22.7 7.1 29 9-37 246-274 (322)
85 1ez3_A Syntaxin-1A; three heli 34.6 1E+02 0.0035 20.6 10.2 72 11-97 5-76 (127)
86 3mq7_A Bone marrow stromal ant 34.6 1.2E+02 0.0041 21.4 6.6 51 69-120 51-101 (121)
87 2efr_A General control protein 34.4 1.3E+02 0.0045 22.0 6.6 38 75-112 84-121 (155)
88 3kin_B Kinesin heavy chain; mo 34.1 87 0.003 21.5 5.4 35 10-44 81-115 (117)
89 3viq_B Mating-type switching p 34.1 67 0.0023 21.4 4.5 26 86-111 5-30 (85)
90 3twe_A Alpha4H; unknown functi 34.0 52 0.0018 17.0 3.5 19 94-112 6-24 (27)
91 2yny_A General control protein 33.2 54 0.0019 22.8 4.0 43 58-102 61-103 (106)
92 1lrz_A FEMA, factor essential 33.1 1E+02 0.0035 25.2 6.5 46 67-112 239-297 (426)
93 3hh0_A Transcriptional regulat 33.1 99 0.0034 21.8 5.7 39 72-110 77-115 (146)
94 2z5i_A TM, general control pro 32.6 81 0.0028 18.8 5.5 37 80-117 3-39 (52)
95 1gu4_A CAAT/enhancer binding p 32.6 97 0.0033 20.1 5.0 35 78-112 39-73 (78)
96 1ci6_A Transcription factor AT 32.2 89 0.003 19.1 6.0 38 75-112 23-60 (63)
97 2fxo_A Myosin heavy chain, car 32.0 1.3E+02 0.0043 20.9 12.3 44 69-112 77-120 (129)
98 1pwb_A SP-D, PSP-D, pulmonary 31.9 1.1E+02 0.0038 21.4 5.9 24 56-82 62-85 (177)
99 3lbx_B Beta-I spectrin, spectr 31.6 1.4E+02 0.0047 21.2 6.9 32 7-38 33-64 (185)
100 2l5g_A GPS2 protein, G protein 31.4 43 0.0015 19.0 2.7 31 10-40 7-37 (38)
101 3rrk_A V-type ATPase 116 kDa s 30.8 2E+02 0.0067 22.7 14.8 33 72-104 223-255 (357)
102 3a7o_A Autophagy protein 16; c 30.8 1.1E+02 0.0038 19.8 6.5 49 64-112 5-55 (75)
103 3trt_A Vimentin; cytoskeleton, 30.7 99 0.0034 19.2 6.5 38 72-109 25-62 (77)
104 1gmj_A ATPase inhibitor; coile 30.6 1.2E+02 0.0041 20.1 6.2 23 90-112 52-74 (84)
105 4abm_A Charged multivesicular 30.6 1.1E+02 0.0038 19.7 5.9 31 72-102 3-33 (79)
106 3lbx_A Spectrin alpha chain, e 30.4 1.4E+02 0.0049 21.0 9.6 74 8-106 85-158 (161)
107 2yko_A LINE-1 ORF1P; RNA-bindi 30.1 1.2E+02 0.0041 23.8 6.0 35 78-112 9-43 (233)
108 1m1j_A Fibrinogen alpha subuni 30.0 2.7E+02 0.0093 24.1 11.0 45 73-117 109-160 (491)
109 3qh9_A Liprin-beta-2; coiled-c 29.7 1.2E+02 0.0042 20.0 9.4 24 89-112 54-77 (81)
110 2qlz_A Transcription factor PF 29.1 1.5E+02 0.0053 22.6 6.5 82 9-94 114-202 (232)
111 3ghg_C Fibrinogen gamma chain; 29.0 2.6E+02 0.0089 23.6 11.7 104 14-118 26-133 (411)
112 1ses_A Seryl-tRNA synthetase; 28.7 2.5E+02 0.0086 23.3 11.1 75 17-112 27-101 (421)
113 4e61_A Protein BIM1; EB1-like 28.3 1.1E+02 0.0039 21.1 5.0 31 20-50 27-57 (106)
114 3m9b_A Proteasome-associated A 27.4 88 0.003 24.8 4.9 41 77-118 56-96 (251)
115 1r8e_A Multidrug-efflux transp 27.4 1.5E+02 0.0052 22.2 6.2 39 74-112 78-116 (278)
116 3l4q_C Phosphatidylinositol 3- 27.4 1.9E+02 0.0065 21.5 11.0 51 61-111 82-132 (170)
117 1zxa_A CGMP-dependent protein 27.2 1.2E+02 0.0042 19.2 5.0 40 73-112 16-55 (67)
118 2ap3_A Conserved hypothetical 27.0 87 0.003 23.9 4.6 32 69-100 64-95 (199)
119 3rrk_A V-type ATPase 116 kDa s 27.0 2.3E+02 0.0079 22.3 10.3 68 33-111 61-128 (357)
120 1x79_B RAB GTPase binding effe 26.9 1.6E+02 0.0055 20.4 10.5 29 14-42 9-37 (112)
121 2c5k_T Syntaxin TLG1, T-snare 26.4 1.4E+02 0.0048 19.8 5.2 14 99-112 78-91 (95)
122 3swk_A Vimentin; cytoskeleton, 26.3 1.4E+02 0.0047 19.5 5.3 36 78-113 3-38 (86)
123 1m1j_C Fibrinogen gamma chain; 25.9 2.9E+02 0.01 23.1 10.7 37 76-112 99-135 (409)
124 3qao_A LMO0526 protein, MERR-l 25.0 75 0.0026 24.5 4.0 38 75-112 76-113 (249)
125 3o0z_A RHO-associated protein 24.9 2.1E+02 0.0073 21.2 12.4 39 74-112 89-127 (168)
126 1r8d_A Transcription activator 24.9 1.2E+02 0.0041 19.9 4.7 30 76-105 76-105 (109)
127 3mtu_E Head morphogenesis prot 24.8 1.5E+02 0.0051 19.4 6.2 52 61-112 16-67 (77)
128 3tnu_A Keratin, type I cytoske 24.8 1.8E+02 0.006 20.1 9.3 27 18-44 45-71 (131)
129 2w6a_A ARF GTPase-activating p 24.7 1.3E+02 0.0046 18.8 6.9 52 65-117 8-61 (63)
130 2zvf_A Alanyl-tRNA synthetase; 24.6 1.5E+02 0.0052 20.8 5.4 31 79-109 29-59 (171)
131 2xs1_A Programmed cell death 6 24.4 1.9E+02 0.0066 25.5 7.1 104 8-112 418-526 (704)
132 1zme_C Proline utilization tra 24.4 47 0.0016 19.9 2.3 20 77-96 46-65 (70)
133 2dgc_A Protein (GCN4); basic d 24.3 1.3E+02 0.0044 18.5 4.9 30 83-112 31-60 (63)
134 4etp_A Kinesin-like protein KA 23.9 1.2E+02 0.004 25.2 5.3 25 79-103 14-38 (403)
135 2sak_A Staphylokinase; plasmin 23.7 21 0.00071 25.5 0.5 14 58-71 107-120 (121)
136 3oa7_A Head morphogenesis prot 23.5 1.9E+02 0.0066 22.2 6.0 60 61-121 16-75 (206)
137 1lwu_C Fibrinogen gamma chain; 23.5 2E+02 0.0069 23.3 6.5 33 80-112 24-56 (323)
138 3htk_A Structural maintenance 23.4 1.2E+02 0.0041 17.8 6.1 31 82-112 19-49 (60)
139 1q06_A Transcriptional regulat 23.4 1.8E+02 0.0063 19.9 5.8 33 72-104 76-108 (135)
140 2wg5_A General control protein 23.4 88 0.003 21.2 3.7 25 85-109 10-34 (109)
141 3m9b_A Proteasome-associated A 23.3 1.1E+02 0.0038 24.2 4.7 38 73-110 59-96 (251)
142 1s1c_X RHO-associated, coiled- 23.2 1.5E+02 0.0053 18.9 5.6 30 79-108 3-32 (71)
143 1xaw_A Occludin; coiled-coil, 22.7 2.2E+02 0.0075 20.5 9.7 31 13-43 54-84 (140)
144 1x8y_A Lamin A/C; structural p 22.5 1.6E+02 0.0056 19.0 6.4 47 70-116 16-66 (86)
145 2zvf_A Alanyl-tRNA synthetase; 22.4 41 0.0014 23.9 1.9 29 72-100 29-57 (171)
146 1t2k_D Cyclic-AMP-dependent tr 22.3 1.3E+02 0.0046 17.9 5.5 34 82-116 22-55 (61)
147 1jnm_A Proto-oncogene C-JUN; B 22.3 1.4E+02 0.0047 18.0 5.3 34 82-116 22-55 (62)
148 1nkp_B MAX protein, MYC proto- 21.9 1.6E+02 0.0054 18.6 6.4 61 44-112 17-77 (83)
149 3gpv_A Transcriptional regulat 21.7 2E+02 0.007 20.0 5.6 40 21-60 98-137 (148)
150 3q0x_A Centriole protein; cent 21.6 2.7E+02 0.0093 21.5 6.6 45 68-112 157-201 (228)
151 3etw_A Adhesin A; antiparallel 21.5 2.1E+02 0.0073 20.0 10.2 15 16-30 7-21 (119)
152 4dzo_A Mitotic spindle assembl 21.4 1.3E+02 0.0044 21.0 4.4 30 78-107 7-36 (123)
153 3bas_A Myosin heavy chain, str 21.3 1.8E+02 0.006 18.9 9.9 28 13-40 16-43 (89)
154 2ykt_A Brain-specific angiogen 21.1 2.9E+02 0.01 21.4 9.9 63 10-85 28-94 (253)
155 1avy_A Fibritin, gpwac M; bact 21.0 1.8E+02 0.006 18.8 6.0 37 74-110 7-43 (74)
156 1go4_E MAD1 (mitotic arrest de 20.9 2E+02 0.007 19.5 5.5 32 75-106 12-43 (100)
157 1lwu_A Fibrinogen alpha-1 chai 20.9 1.9E+02 0.0066 20.3 5.1 46 73-118 20-72 (119)
158 2oeq_A Protein of unknown func 20.8 1.6E+02 0.0054 20.0 4.7 21 11-31 39-59 (122)
159 3pbf_A Pulmonary surfactant-as 20.4 1.5E+02 0.005 19.9 4.5 46 33-82 10-57 (148)
160 1gk4_A Vimentin; intermediate 20.2 1.8E+02 0.0062 18.6 6.4 17 28-44 4-20 (84)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.93 E-value=1.1e-24 Score=154.05 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
|.+|+.+++|++++++++.+.+++..++.+++||+.|+++|+.+++|++||++||||||++|+++|.++|++|+++|+..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy13667 91 INSLNEQLTKKGIEINEYKDKFD 113 (144)
Q Consensus 91 i~~l~kql~~~~~el~e~~~k~~ 113 (144)
|++|++++..+++++.+|+..+.
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999883
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.92 E-value=1.8e-24 Score=155.01 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=105.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
..|+..|+++++|+.++++++.+.+++..++.+++||+.|+++|+.|++|++||++||||||++|+++|.++|++|+++|
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 88 NTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
+..|++|++++..+++++.+|+..+.-.+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999994444
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.51 E-value=2.8e-13 Score=101.38 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=103.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccC-CCcceeeeec------------------
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSEL---EQELTEHKIVLDTLKDLD-GDRRCFRLIG------------------ 65 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~L---e~ql~E~~~VleeL~~l~-~d~~~yklvG------------------ 65 (144)
..|++++++...+++|+.+++.+.++++.| .+.+.|+..++++|+.++ ++..+|..+|
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence 479999999999999999999999999999 999999999999999998 8888888855
Q ss_pred ---ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667 66 ---GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119 (144)
Q Consensus 66 ---~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~ 119 (144)
|++|+.|.+||+..|++|+++|+..++.+++.+..+..++..+...+ .++++.
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l-~~l~~~ 141 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA-QEVQQK 141 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHT
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 89999999999999999999999999999999999999999999999 555543
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.37 E-value=2e-11 Score=89.15 Aligned_cols=105 Identities=14% Similarity=0.287 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CC--------------------cceeeeec-cee
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD--GD--------------------RRCFRLIG-GVL 68 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d--------------------~~~yklvG-~VL 68 (144)
.++++...+++|+.+++.+.+++..|...+.|++.++++|+.|+ .+ .+||-.+| |++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence 37899999999999999999999999999999999999999886 33 23777777 899
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
|+.|.+||+..|++|+++++..++.+.+.+..+...+..+...++-.+
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999984333
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=98.66 E-value=7.1e-07 Score=60.83 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667 22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK 101 (144)
Q Consensus 22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~ 101 (144)
.|+-+++++..-++-++....|.+-+-.-+..+..+|++||...+.||+-|+|||+..++.-.=-...+|++|.+..+++
T Consensus 8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei 87 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888899999999999999999999999999999999999999999999999998888899999999999888
Q ss_pred HHHHHHHHH
Q psy13667 102 GIEINEYKD 110 (144)
Q Consensus 102 ~~el~e~~~ 110 (144)
..++..+..
T Consensus 88 me~ls~l~~ 96 (99)
T 3aei_A 88 MEELSKLRA 96 (99)
T ss_dssp HHHHHHC--
T ss_pred HHHHHhhcc
Confidence 888776543
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.80 E-value=0.062 Score=37.12 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI 91 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i 91 (144)
.+..+-..+..++.++..|...+..+.+++.+.+.++..|+.. ...|-= -|..+=.....+.+.....++..+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CPv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i 80 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCPV-CGRELTDEHREELLSKYHLDLNNSKNTL 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECTT-TCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCC-CCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999773 233321 1333334445577888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy13667 92 NSLNEQLTKKGIEINEYKDKFD 113 (144)
Q Consensus 92 ~~l~kql~~~~~el~e~~~k~~ 113 (144)
..+..++..+..++..+...++
T Consensus 81 ~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 81 AKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888884
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=94.36 E-value=0.4 Score=32.91 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~ 89 (144)
++.+..+++.+..+++.+..++..++.-+.|.+.+-+. ...+ ..||=..---=+..++++-+..++.+++.|+.
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~i---G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~ 91 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTV---GTLIVKTTKDKAVAELKEKIETLEVRLNALER 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHh---hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444321 1111 12332222233344445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 90 LINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~ 108 (144)
.++.+.+.+.+++..+.+.
T Consensus 92 ~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 92 QEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=93.35 E-value=0.62 Score=31.48 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT 89 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~ 89 (144)
++.+..+++.+..+++.+..++..++.-+.|.+.+-+. ...+ ..||=..---=+..++++-+..++.+++.|+.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~i---G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSS---GNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777766432 2222 12333333334556677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13667 90 LINSLNEQLTKKGIEINE 107 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e 107 (144)
.++.+.+.+.+++..+.+
T Consensus 87 ~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 87 QEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766643
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=88.24 E-value=0.85 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=28.3
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
+=|....+..|-+.++.+|..|+..+..+...+.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999988888877664
No 10
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=87.45 E-value=0.53 Score=33.29 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceee--eecceehh--------cc----------Hhh---
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFR--LIGGVLCE--------KT----------VKE--- 75 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yk--lvG~VLVe--------~t----------~~E--- 75 (144)
+.++|+..++.+......+..++...+..+.++...-+.=.-+. -...++|+ -. ++.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence 45778888888888888888888888877777766532211111 11234433 22 221
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+..++++=+++++.+++.++++++.+++.+..++..+
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356777788888888888888888888888888877
No 11
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=84.26 E-value=4.2 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.++++++.|+..++.|...+..+-.+....+.+++.+|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888876664
No 12
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=81.94 E-value=4.7 Score=28.23 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=44.1
Q ss_pred cceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 58 ~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+.-|.+-|.. -.++.+|+..|..++..+...|..+..++..++.++..+++
T Consensus 54 aPtY~I~g~~--YnnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 54 APLYEVGTGI--YNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp CCCEEETTEE--ESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEeCCce--eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667776653 47899999999999999999999999999999999988764
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.14 E-value=6.8 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=32.9
Q ss_pred HhhHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 73 VKEVIPTLTTNRDQL---NTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~l---e~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+.+....|.++.+.| +..|+.+++.+..+...+.+++..+ -++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL-DKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL-DKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 555566666666544 4578888999999999999998888 55554
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.61 E-value=26 Score=33.14 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=27.5
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+....+....|.+.+..|+.+...|+.++.+++..+.+..+
T Consensus 1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555677777777777777777777777765555544
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.02 E-value=20 Score=27.75 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
+|+.|+.++..+...+..++.++.|...-++++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655555555444
No 16
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.81 E-value=32 Score=29.26 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.+.++-.+-.+...+..+...|..+.++...-+..+..-.+ + ...|..+...|...|+.++
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~------------------~-~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE------------------P-VDELLAKSREIVKRIGELE 89 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC------------------C-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------------------c-HHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777777666655443221 1 1345556666667777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy13667 96 EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 96 kql~~~~~el~e~~~k~ 112 (144)
.++..+++++..+.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 90 NEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777766666555444
No 17
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.77 E-value=33 Score=29.67 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
+.++-.|-.+...+..+...|..+.++...-+..+..-.+| ...|..+...|...|+.++.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~-------------------~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED-------------------AKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777776666655554432222 13455556666677777777
Q ss_pred HHHHHHHHHHHHHHHh
Q psy13667 97 QLTKKGIEINEYKDKF 112 (144)
Q Consensus 97 ql~~~~~el~e~~~k~ 112 (144)
.+..++.++..+.-.+
T Consensus 93 ~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 93 KEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777766666554444
No 18
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.47 E-value=8.8 Score=25.14 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
..+.++=+..|+.|+.|.+..|+.|+..+..-+.++..++..+ ..+..
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql-~~L~~ 56 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELI-RHLLE 56 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3456677888999999999999999999999999999999998 44433
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.88 E-value=30 Score=29.23 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
+.+++.++...++.+.....+.+..+.....-+++.
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334555566666666666666666666665555544
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.94 E-value=13 Score=24.03 Aligned_cols=74 Identities=8% Similarity=0.127 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
.+-.+++.|+.+.........+++..+.+.+.-... .++-+..|.+++..|+..+++.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~----------------------~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ----------------------LEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999888888754422 3455677888888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13667 95 NEQLTKKGIEINEYKD 110 (144)
Q Consensus 95 ~kql~~~~~el~e~~~ 110 (144)
...+...+.++....+
T Consensus 61 ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 61 SESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887777776544
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.92 E-value=17 Score=25.10 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-CCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD---L-DGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL 94 (144)
Q Consensus 19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~---l-~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l 94 (144)
+|..++.++..|......|...+.+.++=|+-... . +...+|+++.-.- ..+|.....+-++.|..++++|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NP-----a~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNP-----TSVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888877777766431 1 2345777776542 3455555556666666666666
Q ss_pred HHHHH
Q psy13667 95 NEQLT 99 (144)
Q Consensus 95 ~kql~ 99 (144)
...+.
T Consensus 88 r~~v~ 92 (100)
T 1go4_E 88 RGLLR 92 (100)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 22
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=75.33 E-value=9 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
.++++++.|+..++.|...+..+-.++...+.+++.+|
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666665554
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.10 E-value=22 Score=31.43 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=31.0
Q ss_pred cHhhHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINS-------LNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~-------l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
++.++-..|++++.+|+.+|.. |...|.++-.+|.+|...+.|+|.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788888888876664 666666666666667666666664
No 24
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=73.72 E-value=2.7 Score=30.34 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----hcccCCCcceeeeecceehhccH-----------------
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLD---T----LKDLDGDRRCFRLIGGVLCEKTV----------------- 73 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vle---e----L~~l~~d~~~yklvG~VLVe~t~----------------- 73 (144)
.+++++...++.+...++.|..++.....+.. + ++.|+.-.. -...++|+-+-
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~---~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE---EKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---SSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence 34566666667777777777777776633222 2 222322221 23356666431
Q ss_pred -h---hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 -K---EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 -~---Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+ =+..++++=+++++.+++.++++++.+++.+..++..+
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i 128 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRI 128 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12345677777777777777777777777777777777
No 25
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.61 E-value=41 Score=28.46 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=54.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-ceeeeecc--eehhcc--HhhHHHHHHHhHHH
Q psy13667 13 DEEVYNGFQN-LRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDR-RCFRLIGG--VLCEKT--VKEVIPTLTTNRDQ 86 (144)
Q Consensus 13 ~q~~~~~~q~-lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~-~~yklvG~--VLVe~t--~~Ea~~~L~~r~e~ 86 (144)
++..+.+|+. +..+++.|..-+.+|+...++....+..|...-..+ + +.-+. +..+.+ ..+-+..++..+..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~--~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQ--TLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTT--CCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 5667777776 777888777777777777777777766666552111 1 00000 001111 11112222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 87 LNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 87 le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.+..|..|...+...+.++..++.++ ..+.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i-~~l~ 132 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKI-AQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH-HHHH
Confidence 33455666666666666777666666 4443
No 26
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=70.87 E-value=28 Score=25.45 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=50.7
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeee-------cceehhccHhhHHHH
Q psy13667 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLI-------GGVLCEKTVKEVIPT 79 (144)
Q Consensus 7 ~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklv-------G~VLVe~t~~Ea~~~ 79 (144)
...||..++++.-++.|++....=..-|++ |..|+++=-...++ ++--+.+.+++|..-
T Consensus 18 ~~~p~~~~elik~L~~le~sassDa~vrq~--------------Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~ 83 (152)
T 4fla_A 18 GAGPLLTEELIKALQDLENAASGDATVRQK--------------IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLL 83 (152)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH--------------HHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhccccchHHHHHH--------------HHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 367888999999999998877766554444 44455432222221 122334556677776
Q ss_pred HHHhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINS--------------LNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~--------------l~kql~~~~~el~e~~~k~ 112 (144)
|.+-...|+.+++. .+.++.+.+..+++++.++
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665553 3345555555566666555
No 27
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.21 E-value=52 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 81 TTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 81 ~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
...+..|...++.+...|..++..+..+..
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555444444333
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.15 E-value=27 Score=24.25 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ 97 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kq 97 (144)
..+..|+.++..+...+..|+.++.-...+++.|+.-=.+.. -..++++.-+..|.+-++......-.|+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~--------~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM--------LQREEAENTLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 356788999999999999999999888888888754211111 112233333333444333333333344555
Q ss_pred HHHHHHHHHHHHHHh
Q psy13667 98 LTKKGIEINEYKDKF 112 (144)
Q Consensus 98 l~~~~~el~e~~~k~ 112 (144)
++.+.+++.=++.-|
T Consensus 92 iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 92 VESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444433
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.37 E-value=17 Score=32.11 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el 105 (144)
++..|+..|+.+...|++++.-+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 30
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=66.61 E-value=20 Score=23.73 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13667 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLT 99 (144)
Q Consensus 20 ~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~ 99 (144)
++.|+.++..+......++.++.-...+.+.+..-=.+ .+-..++++.-...|.+-++.....--.|+.+++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~--------E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE--------EMLQREEAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888777777766432111 1222333444444444444444444444555555
Q ss_pred HHHHHHHH
Q psy13667 100 KKGIEINE 107 (144)
Q Consensus 100 ~~~~el~e 107 (144)
.+..++.=
T Consensus 74 sL~eEl~f 81 (86)
T 3swk_A 74 SLQEEIAF 81 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 31
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=65.99 E-value=57 Score=28.10 Aligned_cols=36 Identities=6% Similarity=-0.025 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
+.++-.|-.+...+..+...|..+.+.+..-+..+.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555555555555444443
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.15 E-value=57 Score=26.84 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 23 LRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 23 lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
||+++..+.....+++.|-+-|+.-.-+|-. +.+--+.-=.+|++.++.+|.+++.+|++..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMA------------------SLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666655544333321 1111111122577777777777777777777
Q ss_pred HHHHHHH
Q psy13667 103 IEINEYK 109 (144)
Q Consensus 103 ~el~e~~ 109 (144)
.++.+++
T Consensus 464 ~~~~~~~ 470 (471)
T 3mq9_A 464 AEVERLR 470 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766654
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.29 E-value=65 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=31.4
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
.+....+++.++.++..++...+++.++.+++..+..+++....
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888888888888888888888887744433
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.70 E-value=21 Score=23.23 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL 51 (144)
++++...++..-.+++.--..+..++.++.|-+..+.+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.20 E-value=38 Score=24.08 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTK 100 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~ 100 (144)
+=|+.++..-..-+.+-++|-.-|+.-..+|.. +.++-+.--.++++.|+.+|+.|+..+++
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~------------------SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMA------------------SLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666666665555532 11111111255799999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy13667 101 KGIEINEYKDKF 112 (144)
Q Consensus 101 ~~~el~e~~~k~ 112 (144)
...++++++..+
T Consensus 90 a~ae~erlr~~~ 101 (121)
T 3mq7_A 90 ASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999999988
No 36
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=62.99 E-value=10 Score=22.81 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=20.5
Q ss_pred ehhccHhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy13667 68 LCEKTVKEVIPTLTTNRDQLNTLINSLNEQL 98 (144)
Q Consensus 68 LVe~t~~Ea~~~L~~r~e~le~~i~~l~kql 98 (144)
.+...+.+.+.+|..+++.+..+++.|+.++
T Consensus 16 ~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 16 KFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566777777777777777777666543
No 37
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=62.83 E-value=36 Score=28.53 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLN 95 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~ 95 (144)
.+.++-.+-.+...+..+...|..+.++...-+..+..-.+| . ..|..+...|...|+.++
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~---------------~----~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD---------------T----TEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC---------------T----TTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------------H----HHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888877776665544332211 1 223344555666777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy13667 96 EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 96 kql~~~~~el~e~~~k~ 112 (144)
.++..+++++..+.-.+
T Consensus 89 ~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 89 EELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777777766665555
No 38
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=62.68 E-value=26 Score=23.95 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQL----------TKKGIEINEYKDKF 112 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql----------~~~~~el~e~~~k~ 112 (144)
...++++..+|+..+..|+.+|..|+... .-+..+++.|.+.|
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 46678888888888888887777655433 23345555555554
No 39
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.56 E-value=21 Score=20.90 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
|-..++-+..+|...+.++.++++++.++.+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777777776654
No 40
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.27 E-value=80 Score=27.22 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ 97 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kq 97 (144)
.++-.+-.+...+..+...|..+.++...-+..+..-.++. + ...++-...|..+...|...|+.++..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~-------~----~~~~~~~~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNS-------Q----VQQDPQYQSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-------T----GGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-------c----ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555444433211110 0 011122345556666666666666666
Q ss_pred HHHHHHHHHHHHHHh
Q psy13667 98 LTKKGIEINEYKDKF 112 (144)
Q Consensus 98 l~~~~~el~e~~~k~ 112 (144)
+..+++++..+--.+
T Consensus 139 ~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 139 EAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 666666665544443
No 41
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=59.65 E-value=32 Score=24.33 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 35 SELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 35 ~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+...+.|...++..... | ..+..+....|..+++.|+..|..|...+..+...+..++...
T Consensus 56 r~~G~sL~eIk~~l~~~~~-----------~----~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 56 RRAGLSIEALIDYLALFRE-----------G----EHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHTTCCHHHHHHHHHHHHH-----------C----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHcCCCHHHHHHHHHHHhc-----------c----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666654432 1 1366778888999999999999999998888888888887765
No 42
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=59.63 E-value=28 Score=21.48 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=33.8
Q ss_pred ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
|++=+++.-|++=+|.+.+..|..+.++|.+.+++-++--.++..
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999988876654444433
No 43
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.46 E-value=34 Score=23.07 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=33.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-+-...|+.....|..+++.|......+..+++.|+.+|
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999999999999999999988
No 44
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=58.45 E-value=31 Score=23.63 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHH
Q psy13667 25 AEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 25 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
+++..|..++..|+..+.....+.-=-.-..-...||+++. ...|-.+|...=..
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~~~~~~~w~~~~~~Cy~~~~---~~~tw~~A~~~C~~ 58 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH---ERMPFSKVKALCSE 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE---EEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCeEEeCCEEEEEeC---CCCCHHHHHHHHHh
Confidence 33444444444444444444333211122234578999874 35677777665543
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.14 E-value=1.1e+02 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELT 42 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~ 42 (144)
.++..++..+..+...+..++.++.
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444334333333333
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.82 E-value=31 Score=20.83 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=24.8
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELT 42 (144)
Q Consensus 7 ~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~ 42 (144)
.+.+.+.+.+..+...|+..+..|..+..++.+.+.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777776654
No 47
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=55.33 E-value=17 Score=21.25 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQL 98 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql 98 (144)
.+|++|+..|+..++.|...+
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 48
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=54.94 E-value=40 Score=21.82 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
-...|..+++.|..+-..|......-...+.+.-.
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~ 113 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRVESMERQSRLHDALM 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888887777777777766666655433
No 49
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=54.41 E-value=57 Score=23.42 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=21.0
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELE 38 (144)
Q Consensus 7 ~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le 38 (144)
+.+++.++.++.+++.++.++......+..+.
T Consensus 29 ~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~ 60 (214)
T 1s35_A 29 PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVK 60 (214)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34667778888888888877765544444433
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=54.14 E-value=28 Score=24.77 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+....|..+++.|+..|..|...+..+...+..|+...
T Consensus 91 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 91 STILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888887777777666544
No 51
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.71 E-value=35 Score=20.74 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=30.7
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+-...|+.+.+.|+.+-..|...+..+..++..|...+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888888888888888888887776654
No 52
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=53.37 E-value=43 Score=21.62 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=26.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.+..+.|..+++.|..+-..|......-...+.+.-..
T Consensus 77 ~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 77 EDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888777777777766655443
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.11 E-value=59 Score=23.21 Aligned_cols=13 Identities=0% Similarity=0.159 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy13667 19 GFQNLRAEQRQIA 31 (144)
Q Consensus 19 ~~q~lq~q~q~l~ 31 (144)
+|-.++.+...+.
T Consensus 69 El~k~~~~~~~L~ 81 (138)
T 3hnw_A 69 DYFKAKKMADSLS 81 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 54
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.25 E-value=21 Score=21.72 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=21.0
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~e 104 (144)
+..|++.+..|....+.+..++..|..++..++.+
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777777777766666666666655543
No 55
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=49.23 E-value=45 Score=20.65 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=28.7
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
|||.|+.--+.-+.-|+.--..|-..+..|+-+-..++.++..+..-+
T Consensus 1 ~~vSVktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 1 GPLGSKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888777777777777777777788888888888888877765543
No 56
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=47.72 E-value=44 Score=21.46 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 32 TKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 32 ~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
.....+-..+.|....++.... ++. .+..+....|..+++.|+..|..|...+..+...+..+
T Consensus 10 ~~lr~lGfsL~eIk~~l~~~~~--~~~------------~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 10 RHARQLGFSLESIRELLSIRID--PEH------------HTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHC--GGG------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHHHHHhC--CCc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777766653321 110 25567777788888888888877777776665555433
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.53 E-value=52 Score=21.87 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
..+..+.++|+.+=..|..++..+..++..|+.-+ +.+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll-~~~p 77 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLF-KQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCc
Confidence 45678889999999999999999999999999888 5443
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.24 E-value=91 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 23 LRAEQRQIATKLSELEQELTEHKI 46 (144)
Q Consensus 23 lq~q~q~l~~q~~~Le~ql~E~~~ 46 (144)
+++++..+.....++.....|.+.
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ 45 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEA 45 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 59
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=47.18 E-value=51 Score=20.71 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD 53 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 53 (144)
++..+.............|-+.+.-++++-.|.+..|+.++.
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888889999999999999999999999987765
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.89 E-value=1.4e+02 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=28.8
Q ss_pred HhhHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q psy13667 73 VKEVIPTLTTNRDQLNTLIN-------SLNEQLTKKGIEINEYKDKFDIQ 115 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~-------~l~kql~~~~~el~e~~~k~~i~ 115 (144)
+.++-..|+.|+.+|...|. .|...|.++-.+|.++...+.+.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888886554 56666666666666666665333
No 61
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.64 E-value=62 Score=20.94 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-+...++-++.|+..+-+-.+++..++.++..+..++
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666665
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.52 E-value=1.8e+02 Score=31.04 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=30.2
Q ss_pred ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13667 71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI 114 (144)
Q Consensus 71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i 114 (144)
.-+.+.+..++.+++..+..+......+.+++++++.++.+|..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777777777777777777777777777777743
No 63
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=44.41 E-value=52 Score=23.17 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=15.7
Q ss_pred CcceeeeecceehhccHhhHHHHHHH
Q psy13667 57 DRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 57 d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
...||+++. ...+-.+|...=..
T Consensus 57 ~~~CY~~~~---~~~tw~~A~~~C~~ 79 (182)
T 3kqg_A 57 KGNFYYFSL---IPKTWYSAEQFCVS 79 (182)
T ss_dssp TTEEEEECS---SCBCHHHHHHHHHH
T ss_pred CCEEEEEEC---CCCCHHHHHHHHHh
Confidence 568999876 35677777766543
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.75 E-value=79 Score=21.92 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTE 43 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E 43 (144)
-..++.|+-+++.+..++..|+..+.|
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444555555555555555555444
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.83 E-value=1e+02 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQIATKLSELEQELTE 43 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E 43 (144)
+-..+..++..+..+..++..|+.++.+
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~ 896 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNL 896 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433333
No 66
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=41.54 E-value=80 Score=22.14 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
..+++.|+.+++.|..++..|..- .... .-..-..+||+++. ...|-.+|...=..
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~~-----~~~~--~~~~~~~~Cy~~~~---~~~tw~~A~~~C~~ 77 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNKL-----HAFS--MGKKSGKKFFVTNH---ERMPFSKVKALCSE 77 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHH--TTCCTTSCEEEEEE---EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-----ccCC--CeEEECCEEEEEeC---CccCHHHHHHHHHh
Confidence 334555555555555555554431 1112 22234578999874 34566676665443
No 67
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=41.47 E-value=72 Score=25.06 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=35.0
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcCcC
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF---DIQLQGNKT 121 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~---~i~~~~~~~ 121 (144)
.+|-+..|++|++.|....+..++.+..++..+.++...+ ||+|.|-.+
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPE 62 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPE 62 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCC
Confidence 4566777888888888777777777777777777666554 577776444
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.68 E-value=81 Score=20.88 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecce---ehhccHhhHHHHHHHhHHHHH
Q psy13667 12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGV---LCEKTVKEVIPTLTTNRDQLN 88 (144)
Q Consensus 12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~V---LVe~t~~Ea~~~L~~r~e~le 88 (144)
.++++..++..|+.....+.+++..+...+.+++.. ...=| .|=.-+.+- -+-.....-+..+..++..|.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~----g~~CP--vCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA----KGKCP--VCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----SEECT--TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCC--CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666777776666666442 22211 122222221 112223344455566666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13667 89 TLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~ 106 (144)
..+..++..+..+..++.
T Consensus 85 ~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 85 DRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666655
No 69
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.21 E-value=52 Score=20.03 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=18.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+-...|+.+.+.|+.+-..|...+..+..++..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554443
No 70
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.82 E-value=58 Score=18.97 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIV 47 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~V 47 (144)
.+++.++...-.++.....++..|...+.+.+.+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888888887777654
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.72 E-value=63 Score=19.39 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 85 DQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 85 e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.|..+...|...+..+.+++++++.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 72
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.46 E-value=90 Score=21.05 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=18.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
+.-+..+..+++.|..++.++...|.+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566677777777777766666654
No 73
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=38.37 E-value=92 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD 55 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 55 (144)
....+.+....-..++++.+.+.+++++|+...-.+-.+.+.|+.|.
T Consensus 8 l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~ 54 (302)
T 3ibp_A 8 LSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLS 54 (302)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 34556777788889999999999999999999999999999998884
No 74
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.26 E-value=83 Score=20.62 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.-.|-.+++.+..+|.+|..+++...-+++.+++.-
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888877777655
No 75
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=37.70 E-value=59 Score=22.42 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
.+.++.+....+++.|...+..++.++..|+
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666777788888888888888775
No 76
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.36 E-value=1.4e+02 Score=22.89 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=30.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK 52 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 52 (144)
.+...+.+..++..+......+...+..+...+.+.+..++.++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777766666665554
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.77 E-value=72 Score=19.48 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=28.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+.+-...|..+.+.|+..-..|...+..+..++..|..-+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777766544
No 78
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=36.04 E-value=74 Score=22.75 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIAT 32 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~ 32 (144)
+.++.++.+|+.+|.+++....
T Consensus 40 ~eaq~li~eF~~~Q~~~~~~q~ 61 (151)
T 2pih_A 40 DKVSTIVNQIKALQKQAVNLKH 61 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999998887654
No 79
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.99 E-value=26 Score=24.60 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=20.3
Q ss_pred CccccccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 1 MADAKKKTTKLTDEEVYNGFQNLRAEQRQIATKLS 35 (144)
Q Consensus 1 ~~~~~~~~~~~~~q~~~~~~q~lq~q~q~l~~q~~ 35 (144)
|||..+ .++.+++.+++++|+-+=..|..++.
T Consensus 1 Mas~r~---~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 1 MASKKP---DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp -----C---CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677544 67788999999988877777766654
No 80
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=35.93 E-value=84 Score=22.96 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=33.8
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
=-++-++.++++...+...+..++.++..|+-+.+...+++.
T Consensus 19 K~iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 19 RAVVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999988888877665554
No 81
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=35.71 E-value=68 Score=20.60 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 84 RDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 84 ~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
...|+.+++++...+..++.++++-+=.. |=+|.
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrm-IYLQT 61 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRM-IYLQT 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Confidence 45688888999999999999988766555 55543
No 82
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.89 E-value=3.2e+02 Score=29.22 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=15.6
Q ss_pred ccHhhHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 71 KTVKEVIPT--LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 71 ~t~~Ea~~~--L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+.++|.|+ ++.++..++.+++.....+..++.++.++.+++
T Consensus 2001 ~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l 2044 (3245)
T 3vkg_A 2001 ADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSI 2044 (3245)
T ss_dssp HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 333444444444444444444444444444444
No 83
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=34.87 E-value=1.1e+02 Score=21.19 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
|....||-.--.+++++..+..+..++..++..+..++.++..++
T Consensus 40 GsTVEERGl~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 40 GSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp CSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeccccchhhhccccchhhhheeecccccchhhhhhhhHHHH
Confidence 667788888889999999999999999999999988888887776
No 84
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=34.67 E-value=1.3e+02 Score=22.73 Aligned_cols=29 Identities=3% Similarity=0.099 Sum_probs=17.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSEL 37 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~L 37 (144)
++..++.++.+++.++.++..-...+..|
T Consensus 246 ~~~~~~~ll~~h~~~~~el~~~~~~v~~l 274 (322)
T 1u4q_A 246 TLAAIQGLLKKHEAFETDFTVHKDRVNDV 274 (322)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777665544444433
No 85
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.65 E-value=1e+02 Score=20.60 Aligned_cols=72 Identities=13% Similarity=0.297 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL 90 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~ 90 (144)
+.......+.+.++..+..|...+..|...-..+ | ....++. -+++..+.....+..+-..|...
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~---L---~~~~~~~---------~~~~~l~~l~~~i~~~a~~ik~~ 69 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI---L---ASPNPDE---------KTKEELEELMSDIKKTANKVRSK 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HCSSCCH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---hcCCccH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888887776554433 2 2222222 25666666666666666666666
Q ss_pred HHHHHHH
Q psy13667 91 INSLNEQ 97 (144)
Q Consensus 91 i~~l~kq 97 (144)
|+.|+..
T Consensus 70 Lk~l~~~ 76 (127)
T 1ez3_A 70 LKSIEQS 76 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.62 E-value=1.2e+02 Score=21.43 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=40.6
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNK 120 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~ 120 (144)
..+|+......|++.+..-...++.|...|+.+..++.+...++ -++....
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~-erlr~~~ 101 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV-ERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 35677888888888777777788889999999999888888888 7766544
No 87
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.37 E-value=1.3e+02 Score=21.95 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=28.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+-+...+.|-+|-+..+..|.+.+.+++.++...+.+|
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777788888888888888887777
No 88
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=34.15 E-value=87 Score=21.54 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=29.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEH 44 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~ 44 (144)
.++..++..+|.....++..|...+..|+.+++..
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999988764
No 89
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.11 E-value=67 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 86 QLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 86 ~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
.|+.+++.|+.++..+.+++.++..+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 90
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.99 E-value=52 Score=17.00 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13667 94 LNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 94 l~kql~~~~~el~e~~~k~ 112 (144)
+-+.++++++.+.++++++
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666554
No 91
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=33.24 E-value=54 Score=22.77 Aligned_cols=43 Identities=7% Similarity=0.271 Sum_probs=27.4
Q ss_pred cceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 58 ~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
..-|.-||+.|- .++..+.++..++..+...|..++.++..+.
T Consensus 61 g~~YnnVGdAl~--ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 61 TGIYNNVGSALS--ALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp TEEESSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666776665 4666666666666666666666666665543
No 92
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=33.15 E-value=1e+02 Score=25.18 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=35.5
Q ss_pred eehhccHhhHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHh
Q psy13667 67 VLCEKTVKEVIPTLTTNRDQLNTLINSLN-------------EQLTKKGIEINEYKDKF 112 (144)
Q Consensus 67 VLVe~t~~Ea~~~L~~r~e~le~~i~~l~-------------kql~~~~~el~e~~~k~ 112 (144)
+++.-+.++.+..++++++.+...+.+++ +++.+++++++.+.+++
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 297 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKI 297 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999998884 45556666666665555
No 93
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.13 E-value=99 Score=21.79 Aligned_cols=39 Identities=8% Similarity=0.143 Sum_probs=30.2
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
+..+.+..|..+++.|...+..+...+..+...+..+..
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777888888888888888888888887777765543
No 94
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.61 E-value=81 Score=18.82 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
|-.|-+|-+..+.+|.+.+.+++.++..-+.+| ..+.
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~~eKek~-~~i~ 39 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELYAQKLKY-KAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHH
Confidence 345778888888899999999998888887777 4443
No 95
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.57 E-value=97 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+..+.++|+.+=..|...+..+..++..|+.-+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888889999999888888887665
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.19 E-value=89 Score=19.15 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=25.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+=...|..+.+.|+.+-..|...+..++.++.-|..-+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777777776665543
No 97
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.99 E-value=1.3e+02 Score=20.88 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=28.3
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-+.+...-+..+..|++..+.....|...-..++.++.++.+.+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777766666666666666666666666555
No 98
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=31.94 E-value=1.1e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=15.3
Q ss_pred CCcceeeeecceehhccHhhHHHHHHH
Q psy13667 56 GDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 56 ~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
-..+||++.. ...+-.+|...=..
T Consensus 62 ~~~~Cy~~~~---~~~~w~~A~~~C~~ 85 (177)
T 1pwb_A 62 VGEKIFKTAG---FVKPFTEAQLLCTQ 85 (177)
T ss_dssp ETTEEEEEEE---EEEEHHHHHHHHHH
T ss_pred ECCEEEEEcC---CccCHHHHHHHHHh
Confidence 3578999874 35566666665443
No 99
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=31.56 E-value=1.4e+02 Score=21.18 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=20.9
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 7 KTTKLTDEEVYNGFQNLRAEQRQIATKLSELE 38 (144)
Q Consensus 7 ~~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le 38 (144)
+.+++.++.++..++.++.++..-......+.
T Consensus 33 ~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~ 64 (185)
T 3lbx_B 33 PRDVSSVELLMKYHQGINAEIETRSKNFSACL 64 (185)
T ss_dssp --CCSSSCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45677788888888888888755544444443
No 100
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.36 E-value=43 Score=19.04 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=21.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQE 40 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~q 40 (144)
..++.+.-.++.+++..++.|....-+|-.|
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456677777777777777777777666543
No 101
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.83 E-value=2e+02 Score=22.71 Aligned_cols=33 Identities=6% Similarity=0.113 Sum_probs=27.1
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~e 104 (144)
+..+++..|+.+++.++.+++.+++.+..+..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888887776
No 102
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.78 E-value=1.1e+02 Score=19.80 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=27.7
Q ss_pred ecceehh--ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 64 IGGVLCE--KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 64 vG~VLVe--~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+||-.|. .+....+..|.+.+..=+.+|.+|..-+.-..+..+.+-..+
T Consensus 5 ~g~n~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEi 55 (75)
T 3a7o_A 5 IGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDEL 55 (75)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHH
Confidence 5664443 234556667777777777777777777766666666666655
No 103
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.72 E-value=99 Score=19.23 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=15.0
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
+..|+......+.+.+.....+-...+.....++.+++
T Consensus 25 nr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elr 62 (77)
T 3trt_A 25 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYR 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344334444444444443333333333333333333
No 104
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.64 E-value=1.2e+02 Score=20.14 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 90 LINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+|+.-.+.|+.+++.++.++.++
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 105
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=30.61 E-value=1.1e+02 Score=19.74 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=23.2
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKG 102 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~ 102 (144)
|..+|+-.|...++.|+...+.|+..+..-.
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~ 33 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQEL 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888777777433
No 106
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=30.37 E-value=1.4e+02 Score=20.96 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL 87 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l 87 (144)
.++..++.++.+++.|+.++......+..+...-.+ | +.... .+-+.|..|++.|
T Consensus 85 ~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~-------L-----------------i~~~~-~~~~~I~~rl~eL 139 (161)
T 3lbx_A 85 EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE-------R-----------------FTMGH-SAHEETKAHIEEL 139 (161)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------------SCTTC-TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------------HhcCC-CchHHHHHHHHHH
Confidence 567778888888888887777766655555433321 1 11111 1447788888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13667 88 NTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 88 e~~i~~l~kql~~~~~el~ 106 (144)
...-+.|..........+.
T Consensus 140 ~~~W~~L~~~~~~R~~~L~ 158 (161)
T 3lbx_A 140 RHLWDLLLELTLEKGDQLL 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655554
No 107
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.07 E-value=1.2e+02 Score=23.77 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
..+++|++.|+.+++.+....+..++.+......+
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL 43 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSL 43 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888887777777777777766665
No 108
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.97 E-value=2.7e+02 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=31.3
Q ss_pred HhhHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 73 VKEVIPTLTTNRDQLNTLIN-------SLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~-------~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
+.++-..|+.|+.+|...|. -|...+.++-.+|.+|...+.+++.
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888876544 4777777777777777777766654
No 109
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.67 E-value=1.2e+02 Score=19.97 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 89 TLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 89 ~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+|..|..++.....++..++.++
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556666666666666666666655
No 110
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.14 E-value=1.5e+02 Score=22.57 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=54.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCCcceeeeecceeh--hccHhhHHHHHH
Q psy13667 9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEH-----KIVLDTLKDLDGDRRCFRLIGGVLC--EKTVKEVIPTLT 81 (144)
Q Consensus 9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~-----~~VleeL~~l~~d~~~yklvG~VLV--e~t~~Ea~~~L~ 81 (144)
.+..+..+...|+.+|.....+-.-...+++-+++. +.+++++..-+ .++.+--.|. ..|..+.-..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~----~~~~l~~~l~~~~~t~~~la~~~~ 189 (232)
T 2qlz_A 114 EPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMT----QLAILHYLLLNGRATVEELSDRLN 189 (232)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT----HHHHHHHHHHSSEEEHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----HHHHHHHHHhcCCCCHHHHHHHhC
Confidence 455678899999999999999999999999988887 55666565532 6666655555 234555555444
Q ss_pred HhHHHHHHHHHHH
Q psy13667 82 TNRDQLNTLINSL 94 (144)
Q Consensus 82 ~r~e~le~~i~~l 94 (144)
-.-..+...+.+|
T Consensus 190 l~~~~V~~~l~~L 202 (232)
T 2qlz_A 190 LKEREVREKISEM 202 (232)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4444444444443
No 111
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.05 E-value=2.6e+02 Score=23.57 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCcceeeeecceehhccHhhHH--HHHHHhHHHHHH
Q psy13667 14 EEVYNGFQ-NLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-DGDRRCFRLIGGVLCEKTVKEVI--PTLTTNRDQLNT 89 (144)
Q Consensus 14 q~~~~~~q-~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-~~d~~~yklvG~VLVe~t~~Ea~--~~L~~r~e~le~ 89 (144)
+..+.+|+ .....++.|...+.+|+..-++...-+..|+.. .++.+...-...+..+.+..... ..++.-+...+.
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344443 677778888888888888888877777777654 44545555555666666653222 224444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 90 LINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 90 ~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
.|..|...+.....++..+..++ ..+..
T Consensus 106 ~i~~l~~~~~~~~~~i~~L~~~v-~~l~~ 133 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVNLKEKV-AQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 66667777777777777777777 44443
No 112
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.72 E-value=2.5e+02 Score=23.28 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHH
Q psy13667 17 YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 17 ~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~k 96 (144)
+.++-.+-.+...+..+...|..+.++...-+ .. ...++ ...|..+...|...|+.++.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i---~~-----------------~~~~~-~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRV---PK-----------------APPEE-KEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SS-----------------SCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-----------------hcccc-HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666554432 11 11122 24455555666666666666
Q ss_pred HHHHHHHHHHHHHHHh
Q psy13667 97 QLTKKGIEINEYKDKF 112 (144)
Q Consensus 97 ql~~~~~el~e~~~k~ 112 (144)
.+..+++++..+.-.+
T Consensus 86 ~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 86 ALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666555544443
No 113
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.34 E-value=1.1e+02 Score=21.08 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 20 FQNLRAEQRQIATKLSELEQELTEHKIVLDT 50 (144)
Q Consensus 20 ~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee 50 (144)
++.|......+...|.-+-.-|+.++....+
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444433
No 114
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.44 E-value=88 Score=24.83 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
+..+...+.++....++|...++....++..++..+ -++++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl-erL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEV-DRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 445666777777777777777777777777777777 55543
No 115
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.41 E-value=1.5e+02 Score=22.20 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=31.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++....|..+++.|+.++..+...+..++..+..+....
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788899999999999999988888888877766543
No 116
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=27.36 E-value=1.9e+02 Score=21.46 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=28.6
Q ss_pred eeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 61 FRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 61 yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
|+.-|.===.....+-..-|..|+..|...-.+|+..+........++...
T Consensus 82 f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERe 132 (170)
T 3l4q_C 82 FRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKR 132 (170)
T ss_dssp SSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555433344556666777777777666666666655444444333333
No 117
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.16 E-value=1.2e+02 Score=19.17 Aligned_cols=40 Identities=5% Similarity=0.155 Sum_probs=20.5
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.-+++..=..++..|+..+..-+..+..+..++.+|+.-+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555666666666666666666665555
No 118
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=27.02 E-value=87 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=24.6
Q ss_pred hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13667 69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTK 100 (144)
Q Consensus 69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~ 100 (144)
|....++|+.++.+|.+.|..+-+.+++..+.
T Consensus 64 v~~~adqa~~nv~eRek~l~kEk~si~~s~ke 95 (199)
T 2ap3_A 64 RGKAVKDLIKNADDRLKEFEKEEDAIKKSEQD 95 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999998888777665543
No 119
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.95 E-value=2.3e+02 Score=22.28 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 33 KLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111 (144)
Q Consensus 33 q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k 111 (144)
....++..+...+.+++.|....+... ++... + ...++..++.+..++..+.+++..+..++.+++..
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~-----~~~~~--~----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSS-----KPFTG--S----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCS-----SCCCS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccc-----cCCcc--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555566666667777776554431 12111 1 33344445555555555555555555555555555
No 120
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.86 E-value=1.6e+02 Score=20.44 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 14 EEVYNGFQNLRAEQRQIATKLSELEQELT 42 (144)
Q Consensus 14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~ 42 (144)
..+..+..+++.++.+....+..|+..++
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777777777777776643
No 121
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=26.42 E-value=1.4e+02 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q psy13667 99 TKKGIEINEYKDKF 112 (144)
Q Consensus 99 ~~~~~el~e~~~k~ 112 (144)
..+..++..++..+
T Consensus 78 ~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 78 KNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 122
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.28 E-value=1.4e+02 Score=19.45 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFD 113 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~ 113 (144)
..|...++.+...-.++.-++......+..|+.+|-
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888888888888888888873
No 123
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.89 E-value=2.9e+02 Score=23.12 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+.+.+.++..|+..+..++..+..+..++..+..+.
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 99 TILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666666666666666665544
No 124
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=24.97 E-value=75 Score=24.54 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=29.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+....|..+++.|...+.+|...+..+...+..+....
T Consensus 76 ~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 76 DKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEI 113 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34667888888888888888888888888777666554
No 125
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.94 E-value=2.1e+02 Score=21.21 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=29.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+....+..|+..|..+++++...+.....+...+++++
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888777777777766666665
No 126
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.90 E-value=1.2e+02 Score=19.89 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEI 105 (144)
Q Consensus 76 a~~~L~~r~e~le~~i~~l~kql~~~~~el 105 (144)
....|..+++.|+..+..+...+..+...+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776666666555443
No 127
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.78 E-value=1.5e+02 Score=19.35 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=30.8
Q ss_pred eeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 61 FRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 61 yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
-|+..|-|-.....|++..|.-..-..++.|+.|+..+.....+...+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 16 NKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455666777778888887777666666666666666655544444444443
No 128
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.75 E-value=1.8e+02 Score=20.14 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 18 NGFQNLRAEQRQIATKLSELEQELTEH 44 (144)
Q Consensus 18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~ 44 (144)
..++.|+-+++.+..++..|+..+.|.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444443
No 129
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.68 E-value=1.3e+02 Score=18.75 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=35.8
Q ss_pred cceehhc--cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667 65 GGVLCEK--TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117 (144)
Q Consensus 65 G~VLVe~--t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~ 117 (144)
|||-++. .+..|+.+=+.++..|-+.-..+...+..+++++..++... ..++
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen-~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN-LQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh-hhhc
Confidence 5555543 24455566667777777777778888888888888888776 5544
No 130
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.56 E-value=1.5e+02 Score=20.81 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
.|.+|++.|..+++.+++.++.+..++....
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666655543
No 131
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=24.45 E-value=1.9e+02 Score=25.55 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCCcceeeeecceehhccHhhHHHHHHH
Q psy13667 8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----DGDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----~~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
..|+++.+....++.. ...+.+...+..|..-...+...+++.+.+ ..|..+=.-.|.-.-...-..+-.++..
T Consensus 418 ~lP~~l~~~~~~i~~~-~g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~ 496 (704)
T 2xs1_A 418 TVPQSILTKSRSVIEQ-GGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA 496 (704)
T ss_dssp SCCHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHH
Confidence 4566666665555432 223444444444444444444444433222 1222333334444444566778889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++..+...+..-...-..+...+..+...+
T Consensus 497 ~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l 526 (704)
T 2xs1_A 497 EGTNFRTVLDKAVQADGQVKECYQSHRDTI 526 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999988888888888888887766
No 132
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.41 E-value=47 Score=19.89 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy13667 77 IPTLTTNRDQLNTLINSLNE 96 (144)
Q Consensus 77 ~~~L~~r~e~le~~i~~l~k 96 (144)
+..|+.++..|+..|..|..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 133
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.31 E-value=1.3e+02 Score=18.46 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 83 NRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 83 r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
+++.|+..++.|...-..+..++..|+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666665544
No 134
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.91 E-value=1.2e+02 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGI 103 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~ 103 (144)
.|++.+..++..++.+...+.++..
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333
No 135
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=23.66 E-value=21 Score=25.47 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=11.8
Q ss_pred cceeeeecceehhc
Q psy13667 58 RRCFRLIGGVLCEK 71 (144)
Q Consensus 58 ~~~yklvG~VLVe~ 71 (144)
..=|+|+|.|+|+.
T Consensus 107 ~~~y~Ltg~Viiek 120 (121)
T 2sak_A 107 NPGFNLITKVVIEK 120 (121)
T ss_dssp SCEEEEEEEEEEEC
T ss_pred CCceEEEeEEEEEe
Confidence 45799999999975
No 136
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.55 E-value=1.9e+02 Score=22.19 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=49.1
Q ss_pred eeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcC
Q psy13667 61 FRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKT 121 (144)
Q Consensus 61 yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~ 121 (144)
-|+..|-|-.....|++..|+-..-..-.+...|.....++..+.+++++.+ -++.|...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l-~kLeGn~s 75 (206)
T 3oa7_A 16 NKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRF-GNLEGNTS 75 (206)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCGG
T ss_pred HHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHccCCHH
Confidence 3455667778888999999988888888888889999999999999999999 77777533
No 137
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.53 E-value=2e+02 Score=23.35 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 80 L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
...++..|+..++.++..|..++.++..+....
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666665555544
No 138
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.45 E-value=1.2e+02 Score=17.82 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+...+..+++.+...+....+.+..++..+
T Consensus 19 ~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 19 EKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 139
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=23.43 E-value=1.8e+02 Score=19.91 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=21.7
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIE 104 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~e 104 (144)
+..++...|..+++.|+..|..|......+..-
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777776666555443
No 140
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.38 E-value=88 Score=21.22 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 85 DQLNTLINSLNEQLTKKGIEINEYK 109 (144)
Q Consensus 85 e~le~~i~~l~kql~~~~~el~e~~ 109 (144)
..|+.+++.+++++..+++++..++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554444
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.27 E-value=1.1e+02 Score=24.25 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
...-...|..+.++|...++.+.+++..+..+++.++.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556778888888888999999999999999888876
No 142
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.19 E-value=1.5e+02 Score=18.94 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEY 108 (144)
Q Consensus 79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~ 108 (144)
+|.+.++.+..+.+.+..+++..+.++...
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666555555554433
No 143
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=22.74 E-value=2.2e+02 Score=20.53 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQELTE 43 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E 43 (144)
+..-..+|..|+.++..+..+..+|..++..
T Consensus 54 F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~ 84 (140)
T 1xaw_A 54 FDTGLQEYKSLQSVLDEINKELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566778888888888888888888877665
No 144
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.47 E-value=1.6e+02 Score=18.98 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=27.1
Q ss_pred hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhh
Q psy13667 70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN----EYKDKFDIQL 116 (144)
Q Consensus 70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~----e~~~k~~i~~ 116 (144)
+.+..|+.......++.+...|..++.++..+..++. +++.-+|+++
T Consensus 16 e~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~ 66 (86)
T 1x8y_A 16 EAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666666666655554 4444444444
No 145
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.37 E-value=41 Score=23.94 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=13.7
Q ss_pred cHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13667 72 TVKEVIPTLTTNRDQLNTLINSLNEQLTK 100 (144)
Q Consensus 72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~ 100 (144)
++.+.+..|.++...++.+++++...+..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444433
No 146
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.33 E-value=1.3e+02 Score=17.95 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
.+.+.|+...+.|...-..+..++..++..+ ..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~-~~L 55 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV-AQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3466677788888888888888888888776 444
No 147
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.27 E-value=1.4e+02 Score=18.01 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667 82 TNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116 (144)
Q Consensus 82 ~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~ 116 (144)
.+++.|+..++.|...-..+..++..++..+ ..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~-~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV-AQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4566777888888888888888888888777 444
No 148
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.93 E-value=1.6e+02 Score=18.59 Aligned_cols=61 Identities=8% Similarity=0.063 Sum_probs=39.3
Q ss_pred HHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 44 HKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 44 ~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
.+..+++|..+=|.-. | -+.++.+++..--+-+..|...+..+...+..+..+...++..+
T Consensus 17 in~~f~~Lr~lvP~~~-----~---~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQ-----G---EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHTTSGGGT-----T---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666766655421 1 24566666666666666666777777777777777777777766
No 149
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.72 E-value=2e+02 Score=20.04 Aligned_cols=40 Identities=8% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcce
Q psy13667 21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRC 60 (144)
Q Consensus 21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~ 60 (144)
.-|+.++..|..++..|+..+...+..++.++.+.....+
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 137 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANA 137 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456666666777777777777777766666666544433
No 150
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.57 E-value=2.7e+02 Score=21.54 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=24.5
Q ss_pred ehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667 68 LCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF 112 (144)
Q Consensus 68 LVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~ 112 (144)
++..+-+.++..|..|...+...+..++..+++.+.+.+..+..+
T Consensus 157 f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 157 FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666555555555555555554444443
No 151
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.55 E-value=2.1e+02 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy13667 16 VYNGFQNLRAEQRQI 30 (144)
Q Consensus 16 ~~~~~q~lq~q~q~l 30 (144)
+..+|++|..+++.|
T Consensus 7 i~~~l~~Leae~q~L 21 (119)
T 3etw_A 7 LVGELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 152
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.38 E-value=1.3e+02 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 78 PTLTTNRDQLNTLINSLNEQLTKKGIEINE 107 (144)
Q Consensus 78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e 107 (144)
..|+..++..+++..||..-...+-.++.+
T Consensus 7 ~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 7 AELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655555444443
No 153
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.28 E-value=1.8e+02 Score=18.91 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 13 DEEVYNGFQNLRAEQRQIATKLSELEQE 40 (144)
Q Consensus 13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~q 40 (144)
+...-.+|..++..+......+..|+..
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~ 43 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQ 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666555555555554
No 154
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=21.14 E-value=2.9e+02 Score=21.38 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=33.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCcceeeeecceehhccHhhHHHHHHHhHH
Q psy13667 10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD----GDRRCFRLIGGVLCEKTVKEVIPTLTTNRD 85 (144)
Q Consensus 10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~----~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e 85 (144)
.|..++++..-..|...+..+...-.-+ +++|.++. ..+-+ +-+|.+|.+ +-++-..|+.+++
T Consensus 28 ~P~~e~li~~~~kY~~al~~~~~a~~~f----------~dal~kia~~A~~s~gs-~elG~~L~~--i~~~~r~ie~~l~ 94 (253)
T 2ykt_A 28 NPSLRNFIAMGKNYEKALAGVTYAAKGY----------FDALVKMGELASESQGS-KELGDVLFQ--MAEVHRQIQNQLE 94 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTSSSC-HHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhccCcch-HHHHHHHHH--HHHHHHHHHHHHH
Confidence 3556666666666666666665554443 33333332 12223 788888855 4444444444444
No 155
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.01 E-value=1.8e+02 Score=18.79 Aligned_cols=37 Identities=8% Similarity=0.208 Sum_probs=29.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD 110 (144)
Q Consensus 74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~ 110 (144)
--.+.+++..+..+..++..++..+...+.++..++.
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 3456788888888888998888888888888887774
No 156
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.87 E-value=2e+02 Score=19.49 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=21.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667 75 EVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN 106 (144)
Q Consensus 75 Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~ 106 (144)
|-+..|.++++.|+.+-.+|.+....++-++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766666653
No 157
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=20.85 E-value=1.9e+02 Score=20.32 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=35.3
Q ss_pred HhhHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667 73 VKEVIPTLTTNRDQLNTL-------INSLNEQLTKKGIEINEYKDKFDIQLQG 118 (144)
Q Consensus 73 ~~Ea~~~L~~r~e~le~~-------i~~l~kql~~~~~el~e~~~k~~i~~~~ 118 (144)
...+...|..|++.|... |.-|.+.+.+--.+|..+.-.+.|+|..
T Consensus 20 y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDIDIKiRs 72 (119)
T 1lwu_A 20 YSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRA 72 (119)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 455677788888888864 4457777777777888899999999875
No 158
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=20.77 E-value=1.6e+02 Score=19.95 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy13667 11 LTDEEVYNGFQNLRAEQRQIA 31 (144)
Q Consensus 11 ~~~q~~~~~~q~lq~q~q~l~ 31 (144)
+..+.++.+|+.+|.+++...
T Consensus 39 ~ea~~li~~F~~~q~~~q~~q 59 (122)
T 2oeq_A 39 ETAYRMFANVRDIQLRLHEKQ 59 (122)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999998765
No 159
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.42 E-value=1.5e+02 Score=19.87 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--cCCCcceeeeecceehhccHhhHHHHHHH
Q psy13667 33 KLSELEQELTEHKIVLDTLKD--LDGDRRCFRLIGGVLCEKTVKEVIPTLTT 82 (144)
Q Consensus 33 q~~~Le~ql~E~~~VleeL~~--l~~d~~~yklvG~VLVe~t~~Ea~~~L~~ 82 (144)
.+..|+.++...+..+ .+.. +.-...||+++.. ..|-.+|...=..
T Consensus 10 ~~~~l~~~l~~~~~~~-~~~~~~~~~~~~Cy~~~~~---~~tw~~A~~~C~~ 57 (148)
T 3pbf_A 10 ELYEIKHQILQTMGVL-SLQGSMLSVGDKVFSTNGQ---SVNFDTIKEMCTR 57 (148)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTSCEEETTEEEEEEEE---EECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHhcceeeCCEEEEEcCC---ccCHHHHHHHHhh
Confidence 3344444444444444 2321 3557789998753 5577777766554
No 160
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.16 E-value=1.8e+02 Score=18.60 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13667 28 RQIATKLSELEQELTEH 44 (144)
Q Consensus 28 q~l~~q~~~Le~ql~E~ 44 (144)
+.+..++..|+..+.|.
T Consensus 4 ~~l~~~~~sLE~~l~e~ 20 (84)
T 1gk4_A 4 DALKGTNESLERQMREM 20 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
Done!