RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13667
(144 letters)
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 55.7 bits (134), Expect = 3e-11
Identities = 19/105 (18%), Positives = 48/105 (45%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
+ + ++ + + + + + +++ ELTE K LD ++ L D ++ +G ++ + T
Sbjct: 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTK 68
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118
+ + L + L +N+L Q K ++ E + L+
Sbjct: 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 48.4 bits (115), Expect = 2e-08
Identities = 16/104 (15%), Positives = 40/104 (38%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
+ FQ L+ + + I+ + +E ++ E + L+ L D ++ G +L
Sbjct: 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK 63
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
E+ L + L ++ Q + ++ E + ++
Sbjct: 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.073
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 38 EQELTEHKIVLDTLKDLDGDRRCFR---LIGGVLCEKTVKEVI--PTLTTNRDQLNTLIN 92
E + I+ + C + +L ++ + +I + +L +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 93 SLNEQLTKKGIEINEYKD-KF---DIQLQGNKTSAP 124
S E++ +K +E + KF I+ + + S
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 30.0 bits (68), Expect = 0.24
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 26 EQRQIATKLSELEQELTEHKIVLDTLKDL 54
EQ+QIA LS +++ + K + L+ +
Sbjct: 380 EQKQIAKILSSVDKSIELKKQKKEKLQRM 408
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 26 EQRQIATKLSELEQELTEHKIVLDTLKDL 54
EQ+QIA L+++++ + + ++ L+ +
Sbjct: 170 EQKQIAKILTKIDEGIEIIEKSINKLERI 198
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.9 bits (68), Expect = 0.26
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 4 AKKKTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL 51
A + + +Q+LRA R+I +L+ L + + +
Sbjct: 102 ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.40
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 23/82 (28%)
Query: 75 EVIPT--LT---TNRDQLNTLINSLNEQL-TKKGIEI---NEYKD-----------KFDI 114
E +P+ L+ ++Q+ +N N L K +EI N K+ ++
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 115 QLQGNKTSAPPPKQENESAPRS 136
L+ K AP ++ P S
Sbjct: 392 TLR--KAKAPSGLDQSR-IPFS 410
Score = 26.9 bits (59), Expect = 2.9
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 64 IGGVLCEKTVKEVIPTLTT---------N---RDQ----------LNTLINSLNEQLTKK 101
+ ++ ++ V+ + N +Q L+T+ N LN + +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF-IKLQ 1875
Query: 102 GIEINEYKDKFDIQ 115
I+I E + ++
Sbjct: 1876 KIDIIELQKSLSLE 1889
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA
binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 28.9 bits (65), Expect = 0.54
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 26 EQRQIATKLSELEQELTEHKIVLDTLKDL 54
QR+ + L+Q+L ++K L +L +
Sbjct: 356 LQRKAGKIVFLLDQKLDQYKKELSSLTVI 384
Score = 27.0 bits (60), Expect = 2.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 26 EQRQIATKLSELEQELTEHKIVLDTLKDL 54
EQ IA LS ++ L +++ + L
Sbjct: 168 EQHAIANTLSVFDERLENLASLIEINRKL 196
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 28.5 bits (64), Expect = 0.72
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 25 AEQRQIATKLSELEQELTEHKIVLDTLKDL 54
EQR+I K+ L + + E + + +
Sbjct: 175 EEQRRIVAKVEALMERVREVRRLRAEAQKD 204
Score = 25.4 bits (56), Expect = 9.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 26 EQRQIATKLSELEQELTEHKIVLDTLKDL 54
EQR+I L +++Q++ K +
Sbjct: 367 EQRRIVAYLDQIQQQVAALKRAQAETEAE 395
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 27.1 bits (60), Expect = 2.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 25 AEQRQIATKLSELEQELTEHKIVLDTLKDL 54
AEQ+ IA KL L ++ K + + +
Sbjct: 163 AEQKIIAEKLDTLLAQVDSTKARFEQIPQI 192
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 26.8 bits (60), Expect = 3.0
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 14 EEVYNGFQ----NLRAEQ----RQIATKLSELEQELTEH--------KIVLDTLKDLDG 56
E ++ F L + + T+ + L + + +V++ + L G
Sbjct: 136 EVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAG 194
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 26.0 bits (58), Expect = 5.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 42 TEHKIVLDTLKDL 54
TEHK VLDT + L
Sbjct: 121 TEHKAVLDTCRQL 133
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target,
structural genomics, protei structure initiative, PSI;
1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Length = 290
Score = 25.8 bits (57), Expect = 5.9
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 19 GFQNLRAEQRQIAT-----KLSELEQELTEHKIVLDTL 51
G L+ IA SE + L + D L
Sbjct: 68 GISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGL 105
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 24.6 bits (53), Expect = 7.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 7 KTTKLTDEEVYNGFQNLRAEQRQ 29
++T +VYN F N R E ++
Sbjct: 57 DLERVTSLKVYNWFANRRKEIKR 79
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer,
beta-sandwich, coiled-coil, recombination; HET: MSE;
2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Length = 235
Score = 25.4 bits (55), Expect = 7.3
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111
+ P + + L + L L K +EI +Y++
Sbjct: 138 IRPLMGMSL-ALQCQVRELATLLHMKDLEIQDYQES 172
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein,
kinesin motor homology domain, karyog mitosis,
microtubules; HET: ADP EBC; 2.30A {Saccharomyces
cerevisiae} PDB: 1u0i_A
Length = 333
Score = 25.6 bits (55), Expect = 7.3
Identities = 12/103 (11%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 25 AEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV------KEVIP 78
+++ + + +EL + + +++ + G R + + + + +
Sbjct: 28 KQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPENLLFDYENGVITQ 87
Query: 79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKT 121
L+ + + N +I + ++++ EY D+ L K
Sbjct: 88 GLSEHVYKFNRVI--PHLKVSEDCFFTQEYSVYHDMALNQKKN 128
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 25.6 bits (55), Expect = 7.9
Identities = 13/87 (14%), Positives = 33/87 (37%)
Query: 14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
+E+ + +N++ + I ++ LE E+ TL++ + + + +
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLL 64
Query: 74 KEVIPTLTTNRDQLNTLINSLNEQLTK 100
K++ L R ++ I L
Sbjct: 65 KKMYLMLDNKRKEVVHKIIELLNVTEL 91
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 25.2 bits (56), Expect = 8.6
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPK 127
VKE ++R ++++ L G++ +E + ++ + +
Sbjct: 347 VKE------SDR------LSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNAS 389
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 25.3 bits (56), Expect = 9.3
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 80 LTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAPRSAGV 139
L R+ L + +L E+ T E ++G AP +E PR
Sbjct: 437 LLEKREVLERVAETLLERETLTAEEFQRV-------VEGLPLEAPEEAREEREPPRVVPK 489
Query: 140 V 140
V
Sbjct: 490 V 490
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.353
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,010,568
Number of extensions: 107022
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 49
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.5 bits)