RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13667
         (144 letters)



>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 107

 Score = 71.4 bits (175), Expect = 9e-18
 Identities = 16/104 (15%), Positives = 40/104 (38%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           +     FQ L+ + + I+ +   +E ++ E +  L+ L     D   ++  G +L     
Sbjct: 4   QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK 63

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
            E+   L    + L     ++  Q  +   ++ E +      ++
Sbjct: 64  DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107


>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
           (delta3-delta2-enoyl-CoA isomerase) {Human (Homo
           sapiens), mitochondrial [TaxId: 9606]}
          Length = 249

 Score = 27.5 bits (59), Expect = 0.56
 Identities = 8/51 (15%), Positives = 16/51 (31%)

Query: 67  VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
           VL E      +  +      +N+L      +L     ++   K    + L 
Sbjct: 4   VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILT 54


>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438
           {Mycoplasma genitalium [TaxId: 2097]}
          Length = 193

 Score = 27.3 bits (59), Expect = 0.61
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL 54
           +E+   F + + EQ  IA  LS  ++ L     +++  + L
Sbjct: 133 KELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEINRKL 173


>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
           subunit, C-terminal domain {Pseudomonas fragi [TaxId:
           296]}
          Length = 124

 Score = 26.3 bits (57), Expect = 0.86
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 2   ADAKKKTTKLTDEEVYNGFQNLRAEQR 28
           AD K K  KL D  V    + +  EQR
Sbjct: 98  ADKKGKQKKLVDSSVLEVLKPIVYEQR 124


>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
           middle domains {Thermotoga maritima [TaxId: 2336]}
          Length = 171

 Score = 25.1 bits (53), Expect = 2.8
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 69  CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEI 105
                 E IP    +   L+T++ ++ ++L +KG+++
Sbjct: 134 YSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDL 170


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 24.1 bits (52), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 7  KTTKLTDEEVYNGFQNLRAEQRQIATKLS 35
          + T LT+  +   FQN RA  R+  T +S
Sbjct: 37 QRTNLTEARIQVWFQNRRARLRKQHTSVS 65


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.4 bits (50), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 7  KTTKLTDEEVYNGFQNLRAEQRQ 29
            T LT+  V   F+N RA+ R+
Sbjct: 36 VWTNLTEARVRVWFKNRRAKWRK 58


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
          (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 23.1 bits (49), Expect = 8.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 9  TKLTDEEVYNGFQNLRAEQRQIATKLSELE 38
           ++T  +VYN F N R E ++ A   + LE
Sbjct: 52 ERVTSLKVYNWFANRRKEIKRRANIAAILE 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,204
Number of extensions: 19745
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 25
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)