Query psy13668
Match_columns 513
No_of_seqs 280 out of 3083
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 17:22:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 2.3E-18 7.8E-23 176.8 25.5 282 22-312 64-409 (451)
2 3o7q_A L-fucose-proton symport 99.8 8.6E-17 2.9E-21 164.5 27.1 272 22-312 63-407 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 3.8E-16 1.3E-20 162.3 18.2 205 22-230 56-352 (491)
4 2gfp_A EMRD, multidrug resista 99.7 3.7E-17 1.3E-21 163.9 7.5 267 22-311 37-351 (375)
5 2cfq_A Lactose permease; trans 99.6 2E-15 7E-20 153.7 15.6 276 22-312 45-375 (417)
6 4gc0_A D-xylose-proton symport 99.5 2.3E-12 7.7E-17 133.7 25.6 149 158-307 273-427 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.5 8.2E-14 2.8E-18 142.7 10.7 148 161-311 28-180 (451)
8 3o7q_A L-fucose-proton symport 99.3 4.6E-12 1.6E-16 129.2 13.1 147 162-310 27-177 (438)
9 2cfq_A Lactose permease; trans 99.3 6.6E-14 2.3E-18 142.5 -0.7 156 156-311 2-163 (417)
10 2xut_A Proton/peptide symporte 99.3 8.5E-12 2.9E-16 130.6 14.0 150 161-311 12-173 (524)
11 2gfp_A EMRD, multidrug resista 99.2 2.6E-11 8.7E-16 121.1 9.6 146 165-312 4-150 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.2 5.6E-10 1.9E-14 115.6 19.2 144 161-305 13-165 (491)
13 2xut_A Proton/peptide symporte 99.1 1.9E-09 6.5E-14 112.6 15.7 114 198-311 336-466 (524)
14 4gc0_A D-xylose-proton symport 98.7 1.6E-07 5.3E-12 97.0 13.1 111 197-308 55-184 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=2.3e-18 Score=176.82 Aligned_cols=282 Identities=12% Similarity=0.060 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH------HHH----H-----HHHH-----------------
Q psy13668 22 TVILMAGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVG------LAW----F-----ALWM----------------- 69 (513)
Q Consensus 22 ~~i~~~~~~lG~~i~~~i~g~L~~~~~gwr~if~~~g~~~------~~~----~-----~~~~----------------- 69 (513)
.++..+...++..++.++.|+++||+ |.|.++.+...+. +.+ . +...
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 142 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR 142 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH
Confidence 67888899999999999999999999 9888776422211 111 1 0000
Q ss_pred ----------------HHHhhhhhHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHHHHHhccCCCCCccchhccc
Q psy13668 70 ----------------TFATGAQIGNVVSMAVSGLLIRYLGG-WTSVFYVFGAVGLAWFALWMTFASSDPSESTHYVAYG 132 (513)
Q Consensus 70 ----------------~~~~~~~~g~~~~~~~~~~l~~~~~g-Wr~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 132 (513)
+......+|.++++.+++.+.+.. | ||+.|++.+++.++..++..++.+|+|++.+..
T Consensus 143 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (451)
T 1pw4_A 143 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP---- 217 (451)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC----
T ss_pred HHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC----
Confidence 000111356677788888877777 8 999999988888877776667777766543221
Q ss_pred ccccccchhhh-------hccCCCCCC--chhhhccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHh
Q psy13668 133 TAVMHKSNRFI-------FSFQNLPPT--PWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLIS 203 (513)
Q Consensus 133 ~~~~~~~~~~~-------~~~~~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~ 203 (513)
++++.+.. .+.++.... ..++.++++.++...+..++.....+.+..+.|.|+++.+|++..+.+.+.
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 294 (451)
T 1pw4_A 218 ---PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 294 (451)
T ss_dssp ---SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHH
T ss_pred ---ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11100000 000011111 146788999999999999999999999999999999998999999999999
Q ss_pred chhHHHHHHHHHhhhhhcCCC--cccchhhHhhHHHH-HHHHHHHhcCC-hhHHHHHHHHHHHHHHhhhhhhHHHhhccc
Q psy13668 204 GWPNRSVIVTYKMRTILSGPR--LTSPFDFSASVGPG-LGILAASYSGC-NRLAVTVSFTLGMGTMGAFLPSLKVNALDL 279 (513)
Q Consensus 204 ~~~~~~~~ig~~~~g~l~dr~--~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
....++.++++++.|++.||+ +||+....+..+.. ++++.+...+. +.........+...+.+...+.......+.
T Consensus 295 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 999999999999999999999 88888777666555 55555555443 333222222222222344445555666677
Q ss_pred Cc-chhHHHHHHHHHHHhH-HhhHHHHHHHHhccc
Q psy13668 280 SP-NYAGTLMALVGGIGAL-SGTVSPYLVGVLTPN 312 (513)
Q Consensus 280 ~p-~~~g~~~gi~~~~~~i-~~~igp~l~g~l~~~ 312 (513)
.| +++|++.|+.+...++ ++.++|.+.|.+.+.
T Consensus 375 ~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 5699999999999999 999999999988874
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.77 E-value=8.6e-17 Score=164.45 Aligned_cols=272 Identities=11% Similarity=0.009 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH--------------H------------------
Q psy13668 22 TVILMAGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALW--------------M------------------ 69 (513)
Q Consensus 22 ~~i~~~~~~lG~~i~~~i~g~L~~~~~gwr~if~~~g~~~~~~~~~~--------------~------------------ 69 (513)
.++..+...++.+++.++.|.++||+ |.|.++.+...+..+..+.. .
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 67888899999999999999999999 98888764322211111100 0
Q ss_pred ---------------HHHhhhhhHHHHHHHHHHHHH-hccCC------------------------chHHHHHHHHHHHH
Q psy13668 70 ---------------TFATGAQIGNVVSMAVSGLLI-RYLGG------------------------WTSVFYVFGAVGLA 109 (513)
Q Consensus 70 ---------------~~~~~~~~g~~~~~~~~~~l~-~~~~g------------------------Wr~~f~i~~~~~~~ 109 (513)
+......+|..+++.+++.+. ..... ||+.|++.+.+.++
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 111111366778888888877 44412 99999887777666
Q ss_pred HHHHHHHhccCCCCCccchhcccccccccchhhhhccCCCCCCchhhhccchhHHHHHHHHHHHHHHHHHHHhhHHHH-H
Q psy13668 110 WFALWMTFASSDPSESTHYVAYGTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKY-M 188 (513)
Q Consensus 110 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lp~~-l 188 (513)
..++.++. +.|+.++.. ++++ +++..+.+++++++++.++...+..++.....+.+..|+|.| +
T Consensus 222 ~~~~~~~~--~~p~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 222 VALLIMLT--KFPALQSDN-------HSDA------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp HHHHHHHC--CCCCCTTTC-------CCCS------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcccccc-------cccc------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55444332 222221111 1110 001112345788999999999999998888899999999999 9
Q ss_pred HHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhh
Q psy13668 189 KDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVGPGLGILAASYSGCNRLAVTVSFTLGMGTMGAF 268 (513)
Q Consensus 189 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 268 (513)
++.+|++..+.+.+.....++..+++++.|+++||++||+....+.++..++++.+.+.+.... ....+..+ .+.+..
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~ 364 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCS-AFMSIQ 364 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHH-HHHTTH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHH-HHHHHH
Confidence 9888999999999999999999999999999999999999988888888777776666554332 22223333 334555
Q ss_pred hhhHHHhhcccCcchhHHHHHHHHHHHhHHhhHHHHHHHHhccc
Q psy13668 269 LPSLKVNALDLSPNYAGTLMALVGGIGALSGTVSPYLVGVLTPN 312 (513)
Q Consensus 269 ~~~~~~~~~~~~p~~~g~~~gi~~~~~~i~~~igp~l~g~l~~~ 312 (513)
.+.......+..|++++.+.++.. ...+++.++|.+.|.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 566666666667666888888877 7789999999999888764
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.69 E-value=3.8e-16 Score=162.31 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHHHHHHH---------------------------------
Q psy13668 22 TVILMAGAQIGNVVSMAVSGLLIRY-LGGWTSVFYVFGAVGLAWFAL--------------------------------- 67 (513)
Q Consensus 22 ~~i~~~~~~lG~~i~~~i~g~L~~~-~~gwr~if~~~g~~~~~~~~~--------------------------------- 67 (513)
.+...+...++..++.++.|+++|| + |.|.++.....+..+..+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 134 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVG 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 6778888999999999999999999 8 9888876432221111100
Q ss_pred -------------HHHHHhhhhhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhccCCCCCccchhccccc
Q psy13668 68 -------------WMTFATGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPSESTHYVAYGTA 134 (513)
Q Consensus 68 -------------~~~~~~~~~~g~~~~~~~~~~l~~~~~gWr~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 134 (513)
.........+|..++|.+++.+.+.. |||+.|++.++..++..+...+..++..++.+..++...
T Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (491)
T 4aps_A 135 TLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL- 212 (491)
T ss_dssp HHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC-
T ss_pred HHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc-
Confidence 00111122366778888888888887 999999987766665554444333322111100000000
Q ss_pred ccccchhhhhcc---------------------------------------------CCCCCCchhhhccchhHHHHHHH
Q psy13668 135 VMHKSNRFIFSF---------------------------------------------QNLPPTPWGKIATSAPVIGLIIA 169 (513)
Q Consensus 135 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~l~~~~~~~~~l~ 169 (513)
++++.+...+. .+.++.+.....+....+...+.
T Consensus 213 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 213 -APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp -SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 00000000000 00000000111122234455555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchh
Q psy13668 170 QIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFD 230 (513)
Q Consensus 170 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~ 230 (513)
.++....+.....++|.|+++..+.+..+.+.+.....+...++.++.+++.||++||+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 5555556666777889999998888888889999999999999999999999999998653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.67 E-value=3.7e-17 Score=163.86 Aligned_cols=267 Identities=16% Similarity=0.139 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH-------HH-------------------------
Q psy13668 22 TVILMAGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFAL-------WM------------------------- 69 (513)
Q Consensus 22 ~~i~~~~~~lG~~i~~~i~g~L~~~~~gwr~if~~~g~~~~~~~~~-------~~------------------------- 69 (513)
.+...+...++..++.++.|++.||+ |.|.++.....+..+.... +.
T Consensus 37 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~ 115 (375)
T 2gfp_A 37 VQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD 115 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 67888889999999999999999999 8877765322111110000 00
Q ss_pred ------------HHHhhhhhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccc
Q psy13668 70 ------------TFATGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPSESTHYVAYGTAVMH 137 (513)
Q Consensus 70 ------------~~~~~~~~g~~~~~~~~~~l~~~~~gWr~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 137 (513)
.......+|..+++.+++.+.+.. +||+.|.+.+++.++..+...+..||+|+++ ++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 184 (375)
T 2gfp_A 116 LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMPETRPVD----------AP 184 (375)
T ss_dssp HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT----------CC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC----------cc
Confidence 001111366778888888887777 9999999887777665543333444432211 10
Q ss_pred cchhhhhccCCCCCCchhhhccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhh
Q psy13668 138 KSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMR 217 (513)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~ 217 (513)
+ +..+.++++.+++|+++...+..++.....+.+..+.|.|+++.+|++..+.+.+.....++..++++..
T Consensus 185 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 255 (375)
T 2gfp_A 185 R---------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFA 255 (375)
T ss_dssp C---------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred c---------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122334678889999999999999899999999999999999889999999999999999999999999
Q ss_pred hhhcCCCcccchhhHhhHH-HHHHHH--HHHhcC-ChhHHHHHHHHHHHHHHhhhhhhHHHhhcccCcchhHHHHHHHHH
Q psy13668 218 TILSGPRLTSPFDFSASVG-PGLGIL--AASYSG-CNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGG 293 (513)
Q Consensus 218 g~l~dr~~~~~~~~~~~~~-~~~~~~--~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~gi~~~ 293 (513)
+++.||.+++. ..+... ...+.. ...... .+.+.......+.....+...+.......+..|+++|++.|+.+.
T Consensus 256 ~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~ 333 (375)
T 2gfp_A 256 GRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGG 333 (375)
T ss_dssp HTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHH
Confidence 99999988722 222221 111111 111111 122222222222223344555666677777778889999999999
Q ss_pred HHhHHhhHHHHHHHHhcc
Q psy13668 294 IGALSGTVSPYLVGVLTP 311 (513)
Q Consensus 294 ~~~i~~~igp~l~g~l~~ 311 (513)
..++++.++|.+.|.+.+
T Consensus 334 ~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998887754
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.64 E-value=2e-15 Score=153.69 Aligned_cols=276 Identities=11% Similarity=0.043 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH------HH---HH-HH-----H------------------
Q psy13668 22 TVILMAGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVG------LA---WF-AL-----W------------------ 68 (513)
Q Consensus 22 ~~i~~~~~~lG~~i~~~i~g~L~~~~~gwr~if~~~g~~~------~~---~~-~~-----~------------------ 68 (513)
.+...+...++..++.++.|+++||+ |.|.++.+...+. .. +. .. .
T Consensus 45 ~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 123 (417)
T 2cfq_A 45 TGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 67888888999999999999999999 8888766432111 00 00 00 0
Q ss_pred ---HHHH--------------hhhhhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhccCCCCCccchhcc
Q psy13668 69 ---MTFA--------------TGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPSESTHYVAY 131 (513)
Q Consensus 69 ---~~~~--------------~~~~~g~~~~~~~~~~l~~~~~gWr~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 131 (513)
.... ....+|..++|.+++.+.+ . +||..|++.++..++..+.++ +.+++|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~----- 195 (417)
T 2cfq_A 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLF-FAKTDAPSSA----- 195 (417)
T ss_dssp HHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSC-SSCCCCSCSS-----
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHH-HcCccccccc-----
Confidence 0000 0113567788888888776 4 899999876665443332222 2222221111
Q ss_pred cccccccchhhhhccCCCCCCchhhhccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCc---chhhhhHHhchhHH
Q psy13668 132 GTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHF---SITSVDLISGWPNR 208 (513)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~---s~~~~~~~~~~~~~ 208 (513)
++++++. .+.++.+..++++++++++++...+..+.....++.+..++|.|+++.++. +....+.......+
T Consensus 196 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 196 ----TVANAVG-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp ----CSSSSSS-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH
T ss_pred ----ccccccc-cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 0000000 000011112345678899988777766665666666778899999876653 23445677777778
Q ss_pred HHHHHHHhhhhhcCCCcccchhhHhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccCc-chhHHH
Q psy13668 209 SVIVTYKMRTILSGPRLTSPFDFSASVGPGLGILAASYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSP-NYAGTL 287 (513)
Q Consensus 209 ~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~ 287 (513)
+..++.+..|+++||++||+....+.++.+++.+.+...++........+..+.+ .....+.......|..| +.||++
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE-VPFLLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHH
Confidence 8889999999999999999988877777777666665544333222222222222 23333334556667765 569999
Q ss_pred HHHH-HHHHhHHhhHHHHHHHHhccc
Q psy13668 288 MALV-GGIGALSGTVSPYLVGVLTPN 312 (513)
Q Consensus 288 ~gi~-~~~~~i~~~igp~l~g~l~~~ 312 (513)
.+.. +....+++.++|.+.|.+.+.
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 9994 888899999999999988763
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.52 E-value=2.3e-12 Score=133.69 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=98.2
Q ss_pred ccchhHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHH
Q psy13668 158 ATSAPVIGLIIAQIG-HDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVG 236 (513)
Q Consensus 158 l~~~~~~~~~l~~~~-~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~ 236 (513)
++.++.........+ .....+.+..|.|.+.+ ..+.+..+.........+...++.++.+++.||+|||+....+..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 351 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHH
Confidence 334444443333333 33344455556666555 4577887777788888899999999999999999999998888877
Q ss_pred HHHHHHHHHhc---CChhHHHHH-HHHHHHHHHhhhhhhHHHhhcccCcc-hhHHHHHHHHHHHhHHhhHHHHHHH
Q psy13668 237 PGLGILAASYS---GCNRLAVTV-SFTLGMGTMGAFLPSLKVNALDLSPN-YAGTLMALVGGIGALSGTVSPYLVG 307 (513)
Q Consensus 237 ~~~~~~~l~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~gi~~~~~~i~~~igp~l~g 307 (513)
..++++.+... .......+. .+....++.....+..+....|++|. .|+++.|+.+..+.+++.+++.+..
T Consensus 352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 352 MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554422 222222222 22222333334445566778888875 5999999999998888877765543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=8.2e-14 Score=142.72 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHHHHHH
Q psy13668 161 APVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVGPGLG 240 (513)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~ 240 (513)
+.++..++..+......+.+...+|.+.++ + .|..+.+++.+...++..++.+..|+++||+|||+.+..+.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 445555566666666656666777777655 5 89999999999999999999999999999999999999999988888
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccCc-chhHHHHHHHHHHHhHHhhHHHHHHHHhcc
Q psy13668 241 ILAASY----SGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSP-NYAGTLMALVGGIGALSGTVSPYLVGVLTP 311 (513)
Q Consensus 241 ~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gi~~~~~~i~~~igp~l~g~l~~ 311 (513)
.++... .++.....+..+..+.+ .+...+.......|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 106 MLFMGFVPWATSSIAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHCHHHHSSSSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHH-hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777 54444433333333333 44555666677777775 779999999999999999999999988654
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=4.6e-12 Score=129.17 Aligned_cols=147 Identities=12% Similarity=-0.024 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHHHHHHH
Q psy13668 162 PVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVGPGLGI 241 (513)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 241 (513)
.+....+..+............+|. +++.+|.|..+.+++.+...++..++.+..|+++||+|||+.+..+.++.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444455555555555556666766 456689999999999999999999999999999999999999999998888888
Q ss_pred HHH---HhcCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccCc-chhHHHHHHHHHHHhHHhhHHHHHHHHhc
Q psy13668 242 LAA---SYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSP-NYAGTLMALVGGIGALSGTVSPYLVGVLT 310 (513)
Q Consensus 242 ~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gi~~~~~~i~~~igp~l~g~l~ 310 (513)
++. ...++.....+..+..+. +.+...+.......+..| ++|+.+.++.+....+|..++|.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 444443333333333333 344555566667777765 67999999999999999999999998887
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=6.6e-14 Score=142.50 Aligned_cols=156 Identities=10% Similarity=-0.000 Sum_probs=100.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhH
Q psy13668 156 KIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASV 235 (513)
Q Consensus 156 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 235 (513)
..+|+++++......+.....+.....++|.|+++.+|+|..+.+++.+...++..++++..|+++||+|||+....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~ 81 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 36889999988888888777777788899999998899999999999999999999999999999999999998877665
Q ss_pred HHHHHHHHH---HhcCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccC---cchhHHHHHHHHHHHhHHhhHHHHHHHHh
Q psy13668 236 GPGLGILAA---SYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLS---PNYAGTLMALVGGIGALSGTVSPYLVGVL 309 (513)
Q Consensus 236 ~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~g~~~gi~~~~~~i~~~igp~l~g~l 309 (513)
...++...+ .+.............++....+...+.......+.. +++++...|..+....+|..++|.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l 161 (417)
T 2cfq_A 82 GMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM 161 (417)
T ss_dssp HTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 443311111 110000000000000000001111111111111111 23456667777777788888888888777
Q ss_pred cc
Q psy13668 310 TP 311 (513)
Q Consensus 310 ~~ 311 (513)
.+
T Consensus 162 ~~ 163 (417)
T 2cfq_A 162 FT 163 (417)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.32 E-value=8.5e-12 Score=130.57 Aligned_cols=150 Identities=9% Similarity=-0.080 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC------cchhhhhHHhchhHHHHHHHHHhhhhhcCCC-cccchhhHh
Q psy13668 161 APVIGLIIAQIGHDFGLFTIVTDLPKYMKDVLH------FSITSVDLISGWPNRSVIVTYKMRTILSGPR-LTSPFDFSA 233 (513)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~~g------~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~ 233 (513)
+.++...+..++....+++...++|.|+++.+| +|..+.+++.+...++..++.+..|+++||+ |||+....+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 456677788888888999999999999999899 9999999999999999999999999999999 999999998
Q ss_pred hHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHhhhhhhHHHhhcccCc-chhHHHHHH---HHHHHhHHhhHHHHHHHH
Q psy13668 234 SVGPGLGILAASYSG-CNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSP-NYAGTLMAL---VGGIGALSGTVSPYLVGV 308 (513)
Q Consensus 234 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gi---~~~~~~i~~~igp~l~g~ 308 (513)
.++.+++.+++...+ +........+..+. +.+...+.......|..| ++|+.+.+. .+...++|..++|.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777766 43333333333333 344555666666777764 568766655 888999999999999888
Q ss_pred hcc
Q psy13668 309 LTP 311 (513)
Q Consensus 309 l~~ 311 (513)
+.+
T Consensus 171 l~~ 173 (524)
T 2xut_A 171 LLK 173 (524)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.21 E-value=2.6e-11 Score=121.11 Aligned_cols=146 Identities=13% Similarity=-0.030 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCcchhhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHHHHHHHHHH
Q psy13668 165 GLIIAQIGHDFGLFTIVTDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVGPGLGILAA 244 (513)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~l 244 (513)
..++..++.......+...+|.+ .+.+|.|..+.+++.+...++..++.+..|+++||+|||+....+.+...++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34455555556666666677765 45689999999999999999999999999999999999999999888888887777
Q ss_pred HhcCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccC-cchhHHHHHHHHHHHhHHhhHHHHHHHHhccc
Q psy13668 245 SYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLS-PNYAGTLMALVGGIGALSGTVSPYLVGVLTPN 312 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~gi~~~~~~i~~~igp~l~g~l~~~ 312 (513)
...++........+.. ....+...+.......|.. +++|+.+.++.+....++..++|.+.+.+.+.
T Consensus 83 ~~~~~~~~l~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQ-GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHhccHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6654322222222222 2233445555666667776 47799999999999999999999999998874
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=5.6e-10 Score=115.56 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----cCcchhhhhHHhchhHHHHHHHHHhhhhhcCC-CcccchhhHhh
Q psy13668 161 APVIGLIIAQIGHDFGLFTIVTDLPKYMKDV-----LHFSITSVDLISGWPNRSVIVTYKMRTILSGP-RLTSPFDFSAS 234 (513)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~ 234 (513)
+.++...+..++....++....++|.|+++. +|.|..+.+++.+...++..++++..|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4577788888888899999999999999998 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhhhHHHhhcccC-cch--hHHHHHHHHHHHhHHhhHHHHH
Q psy13668 235 VGPGLGILAASYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLS-PNY--AGTLMALVGGIGALSGTVSPYL 305 (513)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~--~g~~~gi~~~~~~i~~~igp~l 305 (513)
++.+++.+.+...++........+..+.+ .+...+.......|.. +++ |+.+.++.+...++|..++|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIG-TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 98888888887766554444444433333 3334444445555544 233 5555555555555555555443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.05 E-value=1.9e-09 Score=112.60 Aligned_cols=114 Identities=8% Similarity=-0.084 Sum_probs=69.0
Q ss_pred hhhHHhchhHHHHHHHHHhhhhhc----CCCccc----chhhHhhHHHHHHHHHHHhcC--------ChhHHHHHHHHHH
Q psy13668 198 SVDLISGWPNRSVIVTYKMRTILS----GPRLTS----PFDFSASVGPGLGILAASYSG--------CNRLAVTVSFTLG 261 (513)
Q Consensus 198 ~~~~~~~~~~~~~~ig~~~~g~l~----dr~~~~----~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~ 261 (513)
..+.+.....++..++.++.+++. ||.++| +....+.++.+++.+.+.... .+.........+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777764 444332 234455555556555554432 2223333333322
Q ss_pred HHHHhhhhhhHHHhhcccCc-chhHHHHHHHHHHHhHHhhHHHHHHHHhcc
Q psy13668 262 MGTMGAFLPSLKVNALDLSP-NYAGTLMALVGGIGALSGTVSPYLVGVLTP 311 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~p-~~~g~~~gi~~~~~~i~~~igp~l~g~l~~ 311 (513)
....+...+.......+..| ++||+++|+.++..++++.++|.+.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455556666666665 669999999999999999999999988775
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.65 E-value=1.6e-07 Score=97.02 Aligned_cols=111 Identities=10% Similarity=-0.077 Sum_probs=81.4
Q ss_pred hhhhHHhchhHHHHHHHHHhhhhhcCCCcccchhhHhhHHHHHHHHHHHhcC-----------------ChhH-HHHHHH
Q psy13668 197 TSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFSASVGPGLGILAASYSG-----------------CNRL-AVTVSF 258 (513)
Q Consensus 197 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~-~~~~~~ 258 (513)
.+.+++.+...++.++|.++.|+++||+|||+.+..+.++..++.+...+.. .+.. ..+.-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 4567788888999999999999999999999999999988888877766421 1222 222333
Q ss_pred HHHHHHHhhhhhhHHHhhcccCc-chhHHHHHHHHHHHhHHhhHHHHHHHH
Q psy13668 259 TLGMGTMGAFLPSLKVNALDLSP-NYAGTLMALVGGIGALSGTVSPYLVGV 308 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gi~~~~~~i~~~igp~l~g~ 308 (513)
..++ ..+...+.......|..| ++|+...+..+....++...++.+...
T Consensus 135 l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 135 IGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 3333 345556667777778875 679999999888888777777665543
Done!