RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13668
(513 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 126 bits (319), Expect = 1e-31
Identities = 66/248 (26%), Positives = 95/248 (38%), Gaps = 19/248 (7%)
Query: 74 GAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPS----ESTHYV 129
G Q+G + + +SG L GGW +FYVFG VG AW LW F + DPS S
Sbjct: 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK 234
Query: 130 AYGTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMK 189
Y + + P I S PV + A GH + + T LP ++
Sbjct: 235 KYINSSLQGQK-----GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFIS 289
Query: 190 DVLHFSITSVDLISGWP----------NRSVIVTYKMRTILSGPRLTSPFDFSASVGPGL 239
VL S L+S P + K LS F+ +GPG+
Sbjct: 290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGI 349
Query: 240 GILAASYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGGIGALSG 299
A Y + TL L + +N+LDL+P + G + + G G + G
Sbjct: 350 FAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGG 409
Query: 300 TVSPYLVG 307
++ L G
Sbjct: 410 LIASTLAG 417
Score = 67.5 bits (165), Expect = 6e-12
Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 15/153 (9%)
Query: 323 TYKMRTILSGPTLTSPFDFSASVGPGLGILAASYSGCNRLAVTVSFTLGMGTMGAFLPSL 382
K LS F+ +GPG+ A Y + TL L +
Sbjct: 323 FLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGV 382
Query: 383 KVNALDLSPNYAGTLMALVGGIGALSGTVSPYLVGVLTPNGTLLEWRVVFWTAFFGTLLE 442
+N+LDL+P + G + + G G + G ++ L G + +
Sbjct: 383 LINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS--------KN-------V 427
Query: 443 WRVVFWTAFFVMLITNIIYCFMGSGEIQEWNEP 475
W +VF FV ++ I Y GS E Q+W +
Sbjct: 428 WLIVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 46.6 bits (111), Expect = 2e-05
Identities = 50/236 (21%), Positives = 77/236 (32%), Gaps = 18/236 (7%)
Query: 71 FATGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPSESTHYVA 130
+ G +G + + GLL G W + F + + L L P ES
Sbjct: 126 LSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAALLLPRPPPESKRPKP 184
Query: 131 YGTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPKYMKD 190
A P P K+ PV+ L++A + F F ++T LP Y +
Sbjct: 185 AEEA-------------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ-E 230
Query: 191 VLHFSITSVDLISGWPNRSVIVTYKMRTILS---GPRLTSPFDFSASVGPGLGILAASYS 247
VL S L+ G + + LS G R + LG+ S +
Sbjct: 231 VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT 290
Query: 248 GCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGGIGALSGTVSP 303
+ + LG G F + + GT L G+L G + P
Sbjct: 291 ESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 34.2 bits (79), Expect = 0.16
Identities = 55/314 (17%), Positives = 104/314 (33%), Gaps = 17/314 (5%)
Query: 9 VMLHRLVNEQQSNTVILMAGAQIGNVVSMAVSGLLIRYLG-----GWTSVFYVFGAVGLA 63
+L + S ++++ +G + ++G L G + + G++ LA
Sbjct: 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82
Query: 64 WFALWMTFATGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPS 123
+ + G + + A+ + W A+GL +
Sbjct: 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLG--- 139
Query: 124 ESTHYVAYGTAVMHKSNRFIFSFQNLPPTPWGKIATSAP--VIGLIIAQIGHDFGLFTIV 181
+ G R++F + + ++ L +A FG + ++
Sbjct: 140 ----PLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLL 195
Query: 182 TDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFD--FSASVGPGL 239
T LP Y+++VL S L+ I+ + L RL + L
Sbjct: 196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAAL 254
Query: 240 GILAASYSGCNRLAVTVSFTLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGGIGALSG 299
G+L + + L + LG G AF L + + P GT L G+L G
Sbjct: 255 GLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG 314
Query: 300 TVSPYLVGVLTPNW 313
+ P L G+L
Sbjct: 315 ALGPLLAGLLLDTG 328
Score = 30.0 bits (68), Expect = 2.9
Identities = 38/170 (22%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 254 VTVSFTLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGGIGALSGTVSPYLVGVLTPNW 313
+ G + +LP L LS AG L++L G G L + L L
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242
Query: 314 LAKQICNSVTYKMRTILSGPTLTSPFDFSASVGPGLGILAASYSGCNRLAVTVSFTLGMG 373
L + LG+L + + L + LG G
Sbjct: 243 LLL------------------------LIGLLLAALGLLLLALAPSLALLLVALLLLGFG 278
Query: 374 TMGAFLPSLKVNALDLSPNYAGTLMALVGGIGALSGTVSPYLVGVLTPNG 423
AF L + + P GT L G+L G + P L G+L G
Sbjct: 279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
>gnl|CDD|236614 PRK09705, cynX, putative cyanate transporter; Provisional.
Length = 393
Score = 34.0 bits (78), Expect = 0.17
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 371 GMGTMGAFLPSLKVNALDLSPN--YAGTLMALVGGIGALSGTVSPYLVGVLTPNGTLLEW 428
G+G GAF P + ALD S AG L+A + GIG + ++P+ GVL
Sbjct: 303 GLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR-------- 353
Query: 429 RVVFWTAFFGTLLEWRVVFWTAFFVMLITNIIYCFMGSGEIQEWNE 474
+ L++W + A V+ + I F + Q W +
Sbjct: 354 -----SISGNYLMDWA---FHALCVVGLMIITLRFAPARFPQLWVK 391
Score = 31.3 bits (71), Expect = 1.2
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 261 GMGTMGAFLPSLKVNALDLSPN--YAGTLMALVGGIGALSGTVSPYLVGVL 309
G+G GAF P + ALD S AG L+A + GIG + ++P+ GVL
Sbjct: 303 GLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352
>gnl|CDD|222474 pfam13959, DUF4217, Domain of unknown function (DUF4217). This
short domain is found at the C-terminus of many helicase
proteins.
Length = 64
Score = 30.5 bits (70), Expect = 0.28
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 21/59 (35%)
Query: 128 YVAYGTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIVTDLPK 186
+V+Y A S + IF+ + L G +A S FGL LPK
Sbjct: 24 FVSYVRAYASHSLKSIFNVKKL---DLGHLAKS--------------FGL----LRLPK 61
>gnl|CDD|223063 PHA03374, PHA03374, hypothetical protein; Provisional.
Length = 730
Score = 33.1 bits (76), Expect = 0.37
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 28/84 (33%)
Query: 316 KQICNSVTYKMRTILSGPTLTSPF----------DFSASVGPGLGILAASYSG--CNRLA 363
K +C+ + R+IL P LT+ F F+ SV YS CN A
Sbjct: 424 KIVCHPPPWTYRSILDIPRLTNNFVIKKYSVKEPSFTVSV---------FYSDNVCNGAA 474
Query: 364 VTV-------SFTLGMGTMGAFLP 380
+ + F MG + FLP
Sbjct: 475 ININISGDYLHFLFAMGNLKCFLP 498
Score = 31.9 bits (73), Expect = 0.86
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 28/79 (35%)
Query: 211 IVTYKMRTILSGPRLTSPF----------DFSASVGPGLGILAASYSG--CNRLAVTV-- 256
+ R+IL PRLT+ F F+ SV YS CN A+ +
Sbjct: 429 PPPWTYRSILDIPRLTNNFVIKKYSVKEPSFTVSV---------FYSDNVCNGAAININI 479
Query: 257 -----SFTLGMGTMGAFLP 270
F MG + FLP
Sbjct: 480 SGDYLHFLFAMGNLKCFLP 498
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 29.6 bits (67), Expect = 4.4
Identities = 54/315 (17%), Positives = 105/315 (33%), Gaps = 34/315 (10%)
Query: 28 GAQIGNVVSMAVSGL---LIRYLGGWTSVFYVFGAVGLAWFALWMTFA------------ 72
GA+ V + + G+ L + G + S++ + +G A +
Sbjct: 57 GARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASER 116
Query: 73 --------TGAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLAWFALWMTFASSDPSE 124
+ +G ++ + G ++ + W F + G +G+ W LW+ F P +
Sbjct: 117 ATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175
Query: 125 STHYVA---YGTAVMHKSNRFIFSFQNLPPTPWGKIATSAPVIGLIIAQIGHDFGLFTIV 181
+ Y + + ++ V GL + Q + GL +
Sbjct: 176 AKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235
Query: 182 TDLPKYMKDVLHFSITSVDLISGWPNRSVIVTYKMRTILSGPRLTSPFDFS-ASVGPGLG 240
T P Y+ SI ++ P + + LS L A +
Sbjct: 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA 295
Query: 241 ILAASYS--GCNRLAVT---VSF-TLGMGTMGAFLPSLKVNALDLSPNYAGTLMALVGGI 294
L S N + + ++ LG +GA + + + N AG L+ +
Sbjct: 296 GLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSL 355
Query: 295 GALSGTVSPYLVGVL 309
G L G V P ++G +
Sbjct: 356 GNLGGIVGPIVIGAI 370
>gnl|CDD|239588 cd03511, Rhizopine-oxygenase-like, This CD includes the putative
hydrocarbon oxygenase, MocD, a bacterial rhizopine
(3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and
other related proteins. It has been proposed that MocD,
MocE (Rieske-like ferredoxin), and MocF (ferredoxin
reductase) under the regulation of MocR, act in concert
to form a ferredoxin oxygenase system that demethylates
3-O-MSI to form scyllo-inosamine. This domain family
appears to be structurally related to the membrane fatty
acid desaturases and the alkane hydroxylases. They all
share in common extensive hydrophobic regions that would
be capable of spanning the membrane bilayer at least
twice. Comparison of sequences also reveals the
existence of three regions of conserved histidine
cluster motifs that contain eight histidine residues:
HXXXH, HXXHH, and HXXHH. These histidine residues are
reported to be catalytically essential and proposed to
be the ligands for the iron atoms contained within
homologs, stearoyl CoA desaturase and alkane
hydroxylase.
Length = 285
Score = 28.9 bits (65), Expect = 7.2
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 23/100 (23%)
Query: 59 AVGLAWFALWMTFATGAQIGNVVSMAVSGLLIRYLGG---WTSVFYVFGAVGLAWFALWM 115
A GL ALW+ ++AVSG+LI + G F V+G + A FA W
Sbjct: 15 APGLLDTALWLG-----------ALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARW- 62
Query: 116 TFASSDPSESTHYVAYGTAVMHKSNRFIFSF-QNLPPTPW 154
E H A+ T ++ + I LPP +
Sbjct: 63 -------HECVHGTAFATRWLNDAVGQIAGLMILLPPDFF 95
>gnl|CDD|237913 PRK15119, PRK15119, undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphate transferase;
Provisional.
Length = 365
Score = 28.5 bits (64), Expect = 8.0
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 25/93 (26%)
Query: 34 VVSMAVSGLLIRYLGGWTSVFYVFGA--VGLAWFALWMT-FATGAQIGNVVSM--AVSGL 88
+V M +GL + LG Y+FG + L F ++T FA A I N +M + GL
Sbjct: 109 IVMMVFAGLYLSSLG------YIFGPWEMVLGPFGYFLTLFAVWAAI-NAFNMVDGIDGL 161
Query: 89 LIRYLGGWTSVFYVFGAVG-LAWF------ALW 114
LGG + V F A+G + WF ALW
Sbjct: 162 ----LGGLSCV--SFAAMGIILWFDGQTSLALW 188
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 28.4 bits (64), Expect = 8.2
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 111 FALWMTFASSDPSESTHYVAYGTAVMHKSN--RFIFSFQNLPPTPWGKIATSAP------ 162
+AL+ F S + +G + N RFI S + ++ + P
Sbjct: 35 YALYTVFGGSIWGAILFGLVWGLVIF---NLDRFIVSTIKKRDSGRRRLLQALPRLLLAV 91
Query: 163 VIGLIIA 169
+I ++I+
Sbjct: 92 LIAVVIS 98
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 28.5 bits (64), Expect = 9.1
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 29/146 (19%)
Query: 53 VFYVFGAVGLAWFALWMTFAT--GAQIGNVVSMAVSGLLIRYLGGWTSVFYVFGAVGLA- 109
++ G + + A +MT A Q+ V + L++ Y G T++ Y FG +
Sbjct: 195 IWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVL-YFTGATNILYTFGGHAVTV 253
Query: 110 ------W----------FALWMTFASSDPSESTHYVAYGTAVMHKSNRFIFSFQNLPPTP 153
W A + PS + Y A+G ++ SN +F LP +
Sbjct: 254 EIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSN----AFSLLPRSG 309
Query: 154 WGKIATSAPVIGLIIAQIGHDFGLFT 179
W A VI ++I Q FG
Sbjct: 310 WRDAA----VILMLIHQF-ITFGFAC 330
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,530,549
Number of extensions: 2699147
Number of successful extensions: 3679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3544
Number of HSP's successfully gapped: 290
Length of query: 513
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 412
Effective length of database: 6,457,848
Effective search space: 2660633376
Effective search space used: 2660633376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)