BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13669
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 218 bits (556), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/169 (61%), Positives = 130/169 (76%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VVL+L+TAVKELVENSLDAGAT++++KLKDYG +L+EV+DNG GV E+N+EGLTLKHHTS
Sbjct: 31 VVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K++EF DLT VETFGFRGE V I T H + VG L FDH+G I KT
Sbjct: 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP 150
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTVS+ +FSTLPVR KEF R++KKE+AKM QVL+ YC+++ G++
Sbjct: 151 RPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIR 199
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 218 bits (556), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/169 (61%), Positives = 130/169 (76%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VVL+L+TAVKELVENSLDAGAT++++KLKDYG +L+EV+DNG GV E+N+EGLTLKHHTS
Sbjct: 31 VVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K++EF DLT VETFGFRGE V I T H + VG L FDH+G I KT
Sbjct: 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP 150
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTVS+ +FSTLPVR KEF R++KKE+AKM QVL+ YC+++ G++
Sbjct: 151 RPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIR 199
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 129/169 (76%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VVL+L+TAVKELVENSLDAGAT++++KLKDYG +L+EV+DNG GV E+N+EGLTLKHHTS
Sbjct: 31 VVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K++EF DLT VETFGFRGE V I T H + VG L FDH+G I KT
Sbjct: 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLXFDHNGKIIQKTPYP 150
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTVS+ +FSTLPVR KEF R++KKE+AK QVL+ YC+++ G++
Sbjct: 151 RPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKXVQVLHAYCIISAGIR 199
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
V+ +L TAVKELV+NS+DA A +E+ KDYG E +E +DNG G+ NYE L LKH+TS
Sbjct: 22 VITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K+ +F D+ V+T GFRGE + ++T LE+D GHI +KT S
Sbjct: 82 KIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADK-LEYDMVGHITSKTTTS 140
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTV + +F LPVRQKEF + K++F K V+ GY ++ +K
Sbjct: 141 RNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIK 189
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 3/169 (1%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
V+ A A+KE++EN LDA +TS++V +K+ G +L+++ DNG G+ +++ + + + TS
Sbjct: 25 VIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTS 84
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEF-DHHGHIKTKTLV 121
KL+ F DL S+ T+GFRGE V I T+ + + D K
Sbjct: 85 KLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCA 144
Query: 122 SRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGV 170
Q GT +++ ++F + R+K ++ +E+ K+ +V+ Y + G+
Sbjct: 145 GNQ-GTQITVEDLFYNIATRRKAL-KNPSEEYGKILEVVGRYSVHNAGI 191
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VV A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D +H TS
Sbjct: 25 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 84
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLV 121
K+ DL ++ + GFRGE + + +R W + + T
Sbjct: 85 KIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA-WQAYAEGRDMNVTVKPA 143
Query: 122 SRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGV 170
+ VGTT+ + ++F P R+K F R K EF + +++ L V
Sbjct: 144 AHPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEIIRRIALARFDV 191
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VV A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D +H TS
Sbjct: 22 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 81
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLV 121
K+ DL ++ + GFRGE + + +R W + + T
Sbjct: 82 KIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA-WQAYAEGRDMNVTVKPA 140
Query: 122 SRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGV 170
+ VGTT+ + ++F P R+K F R K EF + +++ L V
Sbjct: 141 AHPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEIIRRIALARFDV 188
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VV A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D +H TS
Sbjct: 21 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLV 121
K+ DL ++ + GFRGE + + +R W + + T
Sbjct: 81 KIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA-WQAYAEGRDMNVTVKPA 139
Query: 122 SRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGV 170
+ VGTT+ + ++F P R+K F R K EF + +++ L V
Sbjct: 140 AHPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEIIRRIALARFDV 187
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VV A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D +H TS
Sbjct: 21 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80
Query: 63 KLREFTDLTSVETFGFRGEXXXXXXXXXXVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLV 121
K+ DL ++ + GFRGE + + +R W + + T
Sbjct: 81 KIASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQEA-WQAYAEGRDMNVTVKPA 139
Query: 122 SRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGV 170
+ VGTT+ + ++F P R+K F R K EF + +++ L V
Sbjct: 140 AHPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEIIRRIALARFDV 187
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 93 VIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQ--KEFHRHLK 150
V VT+ +SGV ++ I+ L + ++H ++TL R H+
Sbjct: 37 VKVTQRIISGV-----YEGVTTIELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQTT 91
Query: 151 KEFAKMTQVLYGYCLVALG 169
K+F+K+ + LY Y A G
Sbjct: 92 KQFSKVVEDLYRYVNAATG 110
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 93 VIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQ--KEFHRHLK 150
V VT+ +SGV ++ I+ L + ++H ++TL R H+
Sbjct: 37 VKVTQRIISGV-----YEGVTTIELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQTT 91
Query: 151 KEFAKMTQVLYGYCLVALG 169
K+F+K+ + LY Y A G
Sbjct: 92 KQFSKVVEDLYRYVNAATG 110
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 93 VIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQ--KEFHRHLK 150
V VT+ +SGV ++ I+ L + ++H ++TL R H+
Sbjct: 37 VKVTQRIISGV-----YEGVTTIELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQTT 91
Query: 151 KEFAKMTQVLYGYCLVALG 169
K+F+K+ + LY Y A G
Sbjct: 92 KQFSKVVEDLYRYVNAATG 110
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 20 DAGATSVEVKLKDYGSELVEVTDNGGGVHEDN----YEGLTLKHHTSKLREFTDLTSV 73
+AG ++ ++YG ++V V+D GG++ + E L K T +++F T++
Sbjct: 221 NAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNI 278
>pdb|3ZXO|A Chain A, Crystal Structure Of The Mutant Atp-Binding Domain Of
Mycobacterium Tuberculosis Doss
pdb|3ZXO|B Chain B, Crystal Structure Of The Mutant Atp-Binding Domain Of
Mycobacterium Tuberculosis Doss
Length = 129
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 11 VKELVENSLD-AGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKH 59
V+E V N++ A A+++ V++K +EVTDNG G D + G L +
Sbjct: 48 VREAVSNAVRHAAASTLTVRVKVDDDLXIEVTDNGRG-XPDEFTGSGLTN 96
>pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme
From Methanosarcina Mazei
Length = 621
Score = 26.6 bits (57), Expect = 8.4, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 6 NLATAVKELVENSLDAGATS---------VEVKLKDYGSELVEVTDNGGGV 47
+L T VKE V+N+LDA + VE DY + ++E DNG G+
Sbjct: 37 SLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIE--DNGPGI 85
>pdb|1Z2K|A Chain A, Nmr Structure Of The D1 Domain Of The Natural Killer Cell
Receptor, 2b4
Length = 109
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 28 VKLKDYGSELVEVTDNGGGVHEDNYEGLTL 57
KL+D G L+E+T+ GG V N++ L L
Sbjct: 79 AKLQDSGHYLLEITNTGGKVCNKNFQLLIL 108
>pdb|2PTT|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTU|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|C Chain C, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|D Chain D, Structure Of Nk Cell Receptor 2b4 (Cd244)
Length = 112
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 28 VKLKDYGSELVEVTDNGGGVHEDNYEGLTL 57
KL+D G L+E+T+ GG V N++ L L
Sbjct: 82 AKLQDSGHYLLEITNTGGKVCNKNFQLLIL 111
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 24 TSVEVKLKDYGSELVEVTDNGGGVHEDN 51
T+ VK K+YG++L+E T+ G + E+N
Sbjct: 153 TAFAVKAKEYGAKLLEYTEVKGFLIENN 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,840,129
Number of Sequences: 62578
Number of extensions: 171725
Number of successful extensions: 521
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 25
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)