Query psy13669
Match_columns 172
No_of_seqs 189 out of 1741
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0323 MutL DNA mismatch repa 100.0 1.2E-38 2.6E-43 281.0 13.4 169 1-171 18-187 (638)
2 PRK00095 mutL DNA mismatch rep 100.0 1.8E-36 3.8E-41 267.3 16.1 169 1-171 17-185 (617)
3 TIGR00585 mutl DNA mismatch re 100.0 7.8E-36 1.7E-40 244.6 15.8 169 1-171 17-186 (312)
4 KOG1979|consensus 100.0 2.7E-36 5.9E-41 255.7 11.9 169 1-171 22-191 (694)
5 KOG1978|consensus 100.0 1.4E-35 3.1E-40 255.7 10.9 171 1-171 15-185 (672)
6 KOG1977|consensus 99.9 3.3E-26 7.2E-31 198.1 5.9 167 3-171 18-188 (1142)
7 PRK14868 DNA topoisomerase VI 99.9 1.4E-22 3E-27 179.0 13.8 148 6-171 46-213 (795)
8 TIGR01052 top6b DNA topoisomer 99.9 2.9E-22 6.2E-27 171.4 12.9 151 5-171 27-198 (488)
9 TIGR01055 parE_Gneg DNA topois 99.9 1.5E-22 3.3E-27 178.6 9.7 150 6-171 30-198 (625)
10 PRK05559 DNA topoisomerase IV 99.9 9.7E-22 2.1E-26 173.9 9.7 152 4-171 35-205 (631)
11 smart00433 TOP2c Topoisomerase 99.8 2.1E-21 4.5E-26 171.0 7.8 150 8-171 3-169 (594)
12 PRK14939 gyrB DNA gyrase subun 99.8 5.4E-21 1.2E-25 170.8 10.2 149 6-171 37-203 (756)
13 PRK05644 gyrB DNA gyrase subun 99.8 7E-21 1.5E-25 168.6 10.4 150 6-171 37-203 (638)
14 TIGR01059 gyrB DNA gyrase, B s 99.8 7.1E-21 1.5E-25 169.3 9.9 151 5-171 29-196 (654)
15 PRK04184 DNA topoisomerase VI 99.8 3.5E-20 7.6E-25 160.2 13.8 149 6-171 36-207 (535)
16 PRK14867 DNA topoisomerase VI 99.8 1.5E-19 3.3E-24 159.0 12.4 148 6-171 36-204 (659)
17 PRK05218 heat shock protein 90 99.8 4.2E-19 9.1E-24 156.9 12.3 155 2-168 22-205 (613)
18 COG0326 HtpG Molecular chapero 99.8 5.5E-18 1.2E-22 147.2 11.9 153 3-166 24-201 (623)
19 PRK14083 HSP90 family protein; 99.8 8.5E-18 1.8E-22 147.8 13.1 131 2-132 19-163 (601)
20 COG1389 DNA topoisomerase VI, 99.8 3.2E-18 6.8E-23 143.2 9.3 152 4-171 34-207 (538)
21 PF13589 HATPase_c_3: Histidin 99.7 2.1E-18 4.6E-23 125.8 4.5 100 7-110 3-106 (137)
22 PTZ00130 heat shock protein 90 99.7 4.5E-17 9.7E-22 145.7 10.0 152 3-165 85-262 (814)
23 PTZ00272 heat shock protein 83 99.7 2.8E-16 6.1E-21 139.9 11.0 152 3-165 22-197 (701)
24 TIGR01058 parE_Gpos DNA topois 99.6 5.9E-16 1.3E-20 137.1 9.4 151 6-171 34-201 (637)
25 COG0187 GyrB Type IIA topoisom 99.6 1.6E-16 3.5E-21 137.6 5.4 150 6-171 36-204 (635)
26 PTZ00109 DNA gyrase subunit b; 99.5 2.7E-15 5.9E-20 135.1 4.4 154 6-171 129-351 (903)
27 PHA02569 39 DNA topoisomerase 99.5 4.2E-14 9E-19 124.7 7.5 151 4-171 43-217 (602)
28 PTZ00108 DNA topoisomerase 2-l 99.4 6.9E-13 1.5E-17 124.7 10.6 156 3-171 54-235 (1388)
29 PLN03128 DNA topoisomerase 2; 99.4 2.1E-12 4.6E-17 120.1 11.6 156 3-171 49-228 (1135)
30 PF02518 HATPase_c: Histidine 99.4 1.4E-12 3.1E-17 90.8 7.2 79 5-90 4-85 (111)
31 PLN03237 DNA topoisomerase 2; 99.3 6.1E-12 1.3E-16 118.3 10.9 156 4-171 75-253 (1465)
32 COG4191 Signal transduction hi 99.3 5E-12 1.1E-16 109.4 8.0 60 6-65 497-561 (603)
33 PRK10604 sensor protein RstB; 99.2 4.4E-11 9.6E-16 101.9 9.5 78 7-90 320-398 (433)
34 TIGR02938 nifL_nitrog nitrogen 99.2 3.6E-11 7.8E-16 101.9 8.7 74 7-89 388-468 (494)
35 PRK11006 phoR phosphate regulo 99.2 1.4E-10 3E-15 98.4 8.8 78 6-89 317-397 (430)
36 PRK09303 adaptive-response sen 99.1 1.4E-10 3.1E-15 97.3 8.4 75 7-89 273-351 (380)
37 PRK10364 sensor protein ZraS; 99.1 2.1E-10 4.5E-15 98.1 9.3 73 6-90 348-423 (457)
38 COG3290 CitA Signal transducti 99.1 1.8E-10 3.9E-15 99.1 8.5 74 5-89 426-505 (537)
39 PRK15053 dpiB sensor histidine 99.1 2.4E-10 5.1E-15 99.5 9.4 76 6-90 432-514 (545)
40 TIGR01386 cztS_silS_copS heavy 99.1 3.9E-10 8.4E-15 95.3 9.2 78 7-90 354-434 (457)
41 KOG0019|consensus 99.1 3.7E-10 8E-15 97.8 9.0 128 4-132 55-203 (656)
42 PRK10815 sensor protein PhoQ; 99.1 4.1E-10 8.9E-15 97.6 9.1 74 7-90 379-453 (485)
43 PRK10549 signal transduction h 99.1 6.7E-10 1.4E-14 94.5 9.3 78 7-90 353-433 (466)
44 PRK09467 envZ osmolarity senso 99.1 7.6E-10 1.6E-14 93.5 9.1 76 7-90 332-408 (435)
45 PRK09470 cpxA two-component se 99.1 8.4E-10 1.8E-14 93.6 9.3 77 7-89 354-431 (461)
46 PRK10755 sensor protein BasS/P 99.1 7.9E-10 1.7E-14 91.4 8.7 74 7-90 248-324 (356)
47 COG2205 KdpD Osmosensitive K+ 99.0 6.6E-10 1.4E-14 99.4 8.4 73 7-87 776-851 (890)
48 KOG0020|consensus 99.0 2.2E-09 4.7E-14 91.4 10.5 149 4-164 93-271 (785)
49 PRK15347 two component system 99.0 1E-09 2.2E-14 100.9 9.2 82 7-98 514-602 (921)
50 PRK11086 sensory histidine kin 99.0 1E-09 2.2E-14 94.9 8.6 72 6-89 433-509 (542)
51 TIGR02916 PEP_his_kin putative 99.0 2.1E-09 4.6E-14 96.6 8.5 71 7-89 580-654 (679)
52 PRK11091 aerobic respiration c 98.9 3.1E-09 6.8E-14 96.5 8.7 99 6-110 398-504 (779)
53 PRK11100 sensory histidine kin 98.9 4.2E-09 9.1E-14 89.3 8.9 77 6-89 368-447 (475)
54 PRK10337 sensor protein QseC; 98.9 3.2E-09 6.9E-14 90.1 7.8 72 7-90 353-426 (449)
55 PRK10618 phosphotransfer inter 98.9 4.9E-09 1.1E-13 96.8 9.2 97 6-110 565-671 (894)
56 PRK10490 sensor protein KdpD; 98.9 4.6E-09 1E-13 97.1 8.7 76 6-89 778-856 (895)
57 PRK13837 two-component VirA-li 98.9 6.2E-09 1.3E-13 95.5 9.3 92 6-110 560-674 (828)
58 TIGR02956 TMAO_torS TMAO reduc 98.9 7.8E-09 1.7E-13 95.6 8.8 96 6-110 579-682 (968)
59 PRK09835 sensor kinase CusS; P 98.9 1.2E-08 2.5E-13 87.2 9.2 78 6-89 375-455 (482)
60 COG0642 BaeS Signal transducti 98.9 8E-09 1.7E-13 82.1 7.7 73 6-88 228-302 (336)
61 PRK11466 hybrid sensory histid 98.9 8.8E-09 1.9E-13 94.8 9.0 94 6-110 561-661 (914)
62 TIGR02966 phoR_proteo phosphat 98.8 1.3E-08 2.9E-13 82.0 8.3 77 7-89 230-309 (333)
63 PRK11073 glnL nitrogen regulat 98.8 1.1E-08 2.4E-13 84.0 7.8 71 7-89 238-322 (348)
64 PRK11360 sensory histidine kin 98.8 1.2E-08 2.5E-13 88.5 7.9 72 6-89 500-575 (607)
65 PRK10841 hybrid sensory kinase 98.8 1.5E-08 3.3E-13 94.0 9.1 97 7-110 563-666 (924)
66 TIGR03785 marine_sort_HK prote 98.8 1.9E-08 4.2E-13 90.9 9.2 79 6-90 597-678 (703)
67 PRK11107 hybrid sensory histid 98.8 3E-08 6.5E-13 91.1 8.8 97 7-110 409-517 (919)
68 COG3852 NtrB Signal transducti 98.8 3.3E-08 7.1E-13 80.2 7.7 72 6-89 241-329 (363)
69 PRK09959 hybrid sensory histid 98.7 3.6E-08 7.9E-13 93.3 8.5 96 6-110 828-935 (1197)
70 PRK13557 histidine kinase; Pro 98.7 4.1E-08 9E-13 84.5 8.2 93 7-110 278-393 (540)
71 COG5002 VicK Signal transducti 98.7 9.6E-08 2.1E-12 78.8 8.2 77 6-88 342-421 (459)
72 TIGR01925 spIIAB anti-sigma F 98.6 1.9E-07 4.1E-12 67.4 8.4 74 4-89 37-116 (137)
73 cd00075 HATPase_c Histidine ki 98.6 2.8E-07 6.1E-12 61.1 8.6 76 7-90 1-80 (103)
74 smart00387 HATPase_c Histidine 98.6 6.8E-07 1.5E-11 60.1 10.1 78 6-90 5-85 (111)
75 COG0643 CheA Chemotaxis protei 98.6 1.5E-07 3.3E-12 84.9 7.8 89 3-98 429-561 (716)
76 PRK10547 chemotaxis protein Ch 98.6 2E-07 4.4E-12 83.6 8.1 96 7-110 386-522 (670)
77 COG5000 NtrY Signal transducti 98.5 1.7E-07 3.7E-12 81.9 5.9 71 7-89 601-681 (712)
78 PRK04069 serine-protein kinase 98.5 6.9E-07 1.5E-11 66.7 7.1 84 4-95 40-130 (161)
79 COG4192 Signal transduction hi 98.4 5.4E-07 1.2E-11 76.7 6.8 59 6-64 564-627 (673)
80 TIGR01924 rsbW_low_gc serine-p 98.4 1.4E-06 3.1E-11 64.9 7.6 85 3-95 39-130 (159)
81 PRK03660 anti-sigma F factor; 98.3 6.2E-06 1.3E-10 60.0 9.9 74 4-89 37-116 (146)
82 PRK13560 hypothetical protein; 98.3 2E-06 4.3E-11 77.6 6.9 44 7-50 712-762 (807)
83 PRK11644 sensory histidine kin 98.2 3.2E-06 7E-11 73.6 7.4 44 7-50 411-456 (495)
84 PF13581 HATPase_c_2: Histidin 98.2 8.9E-06 1.9E-10 57.6 7.4 77 5-94 30-113 (125)
85 PRK10600 nitrate/nitrite senso 98.2 6.2E-06 1.4E-10 72.7 7.8 44 7-50 470-515 (569)
86 COG2972 Predicted signal trans 98.1 1.8E-05 3.9E-10 68.3 8.4 52 5-56 349-407 (456)
87 COG4251 Bacteriophytochrome (l 98.1 1.1E-05 2.3E-10 71.2 6.7 84 7-98 637-729 (750)
88 COG4585 Signal transduction hi 98.1 1.6E-05 3.4E-10 66.5 7.7 47 5-51 278-326 (365)
89 COG3851 UhpB Signal transducti 97.8 9.8E-05 2.1E-09 61.6 7.6 45 6-50 410-456 (497)
90 PRK10935 nitrate/nitrite senso 97.8 7.5E-05 1.6E-09 65.2 7.3 44 7-50 472-518 (565)
91 COG2172 RsbW Anti-sigma regula 97.7 0.00025 5.3E-09 52.3 8.1 86 3-100 37-130 (146)
92 COG3850 NarQ Signal transducti 97.5 0.0002 4.2E-09 62.3 6.2 44 7-50 482-527 (574)
93 KOG0787|consensus 97.5 0.00047 1E-08 57.6 7.5 78 5-83 259-348 (414)
94 COG3920 Signal transduction hi 97.3 0.00063 1.4E-08 53.4 5.7 47 4-50 120-174 (221)
95 KOG0355|consensus 97.0 0.0012 2.5E-08 60.0 5.3 123 4-132 51-192 (842)
96 PRK13559 hypothetical protein; 97.0 0.0017 3.7E-08 53.5 5.6 45 6-50 267-319 (361)
97 COG4564 Signal transduction hi 96.9 0.0051 1.1E-07 51.0 8.0 48 6-53 359-408 (459)
98 COG3275 LytS Putative regulato 96.6 0.0037 8E-08 54.0 5.1 44 7-50 457-507 (557)
99 PF14501 HATPase_c_5: GHKL dom 96.0 0.063 1.4E-06 36.4 7.9 41 6-46 5-51 (100)
100 COG5381 Uncharacterized protei 76.2 10 0.00022 28.1 5.6 53 3-55 60-114 (184)
101 COG2865 Predicted transcriptio 72.3 8.1 0.00018 33.8 5.0 46 5-53 269-322 (467)
102 PF02184 HAT: HAT (Half-A-TPR) 67.4 5.6 0.00012 21.5 2.0 20 152-171 2-21 (32)
103 PF07492 Trehalase_Ca-bi: Neut 64.7 6.1 0.00013 20.9 1.7 13 33-45 11-23 (30)
104 KOG1845|consensus 56.2 13 0.00029 34.5 3.5 56 8-63 148-215 (775)
105 PF03671 Ufm1: Ubiquitin fold 42.5 8.3 0.00018 24.9 0.0 24 36-59 45-69 (76)
106 cd01766 Ufm1 Urm1-like ubiquit 35.8 24 0.00051 22.9 1.3 23 37-59 46-69 (82)
107 KOG1845|consensus 34.2 22 0.00047 33.2 1.3 20 38-57 2-21 (775)
108 PF07205 DUF1413: Domain of un 30.8 1.1E+02 0.0024 19.1 3.9 15 123-137 11-25 (70)
109 smart00557 IG_FLMN Filamin-typ 30.6 82 0.0018 20.7 3.4 11 36-46 46-56 (93)
110 PF11953 DUF3470: Domain of un 30.2 34 0.00073 19.7 1.2 18 155-172 3-20 (43)
111 TIGR03793 TOMM_pelo TOMM prope 29.6 1.5E+02 0.0033 19.2 4.4 48 3-55 23-74 (77)
112 PF03646 FlaG: FlaG protein; 29.2 1.8E+02 0.004 19.6 5.2 39 18-56 49-93 (107)
113 PF08861 DUF1828: Domain of un 27.1 85 0.0019 20.6 3.0 26 20-46 5-30 (90)
114 KOG3938|consensus 26.4 74 0.0016 26.0 3.0 25 23-48 127-151 (334)
115 PF08262 Lem_TRP: Leucophaea m 24.3 36 0.00079 13.3 0.5 7 75-81 3-9 (10)
116 TIGR02533 type_II_gspE general 24.0 2.2E+02 0.0047 25.1 5.7 38 7-45 108-145 (486)
117 PRK10436 hypothetical protein; 22.7 2.4E+02 0.0052 24.7 5.7 38 7-45 84-121 (462)
118 KOG3483|consensus 22.2 46 0.001 21.7 0.9 23 36-58 56-79 (94)
119 PF12890 DHOase: Dihydro-orota 21.3 88 0.0019 22.8 2.3 42 12-53 23-68 (142)
No 1
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-38 Score=280.97 Aligned_cols=169 Identities=36% Similarity=0.583 Sum_probs=157.8
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.+|..+|+|||+||+||+|+.|.|.+..++...|.|.|||+||++++++.++.+|+|||..+..|+....++||||
T Consensus 18 GEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGFRG 97 (638)
T COG0323 18 GEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGFRG 97 (638)
T ss_pred cceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCccH
Confidence 58999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEE-EeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQV 159 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~ 159 (172)
.+|+|++.+|+++|+||+.+...+|++.++ .|.+. ...+...+.||+|+|+|||+|+|+|++ |+++.+.++..|.++
T Consensus 98 EAL~SIasVsrlti~Srt~~~~~~~~~~~~-g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrK-flks~~~E~~~i~~v 175 (638)
T COG0323 98 EALASIASVSRLTITSRTAEASEGTQIYAE-GGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRK-FLKSEKTEFGHITEL 175 (638)
T ss_pred HHHHHHHhhheeEEEeecCCcCceEEEEec-CCcccccccCCCCCCCCEEEehHhhccChHHHH-hhcccHHHHHHHHHH
Confidence 999999999999999998887888999987 55554 556667788999999999999999999 889999999999999
Q ss_pred HHHhhhhcCCCC
Q psy13669 160 LYGYCLVALGVK 171 (172)
Q Consensus 160 l~~~a~~~p~i~ 171 (172)
+++||++||+|+
T Consensus 176 v~r~ALahp~I~ 187 (638)
T COG0323 176 INRYALAHPDIS 187 (638)
T ss_pred HHHHHhcCCCeE
Confidence 999999999985
No 2
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=1.8e-36 Score=267.34 Aligned_cols=169 Identities=34% Similarity=0.552 Sum_probs=155.9
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.+|.++|+|||+||+||+|+.|.|.+..++...|+|.|||+||++++++.+|.+++|||..+.+|+....++|++|
T Consensus 17 gevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrG 96 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRG 96 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcch
Confidence 58999999999999999999999999999987777899999999999999999999999999998888888889999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVL 160 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l 160 (172)
.||+|++.+|+++|.|++.+...+|++.+. +|.+....+....+||+|+|+|||+|+|+|++ |+++.+.++..+.+++
T Consensus 97 eAL~sI~~vs~l~i~s~~~~~~~~~~~~~~-~G~~~~~~~~~~~~GT~V~v~~LF~n~P~Rrk-flk~~~~e~~~i~~~v 174 (617)
T PRK00095 97 EALPSIASVSRLTLTSRTADAAEGWQIVYE-GGEIVEVKPAAHPVGTTIEVRDLFFNTPARRK-FLKSEKTELGHIDDVV 174 (617)
T ss_pred hHHHhhhhceEEEEEEecCCCCceEEEEec-CCcCcceecccCCCCCEEEechhhccCcHHHH-hccCcHHHHHHHHHHH
Confidence 999999999999999999887888999987 77666555666789999999999999999998 7778889999999999
Q ss_pred HHhhhhcCCCC
Q psy13669 161 YGYCLVALGVK 171 (172)
Q Consensus 161 ~~~a~~~p~i~ 171 (172)
++||++||+|+
T Consensus 175 ~~~Al~~p~i~ 185 (617)
T PRK00095 175 NRLALAHPDVA 185 (617)
T ss_pred HHHhhcCCCcE
Confidence 99999999985
No 3
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.8e-36 Score=244.62 Aligned_cols=169 Identities=41% Similarity=0.649 Sum_probs=148.9
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.++.++|.|||+||+||+|+.|.|.+...+...|.|.|||.||++++++.+|++|+++|.....+.....++|++|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG 96 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRG 96 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccc
Confidence 47899999999999999999999999999976555679999999999999999999999999988766666778999999
Q ss_pred chhcccccccceEEEEee-cCCCceEEEEEecCCeEEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRH-KLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQV 159 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~ 159 (172)
+||+|++.+++++|.|++ .+...+|++..+ .+.+....+...++||+|++++||+++|+|++ +.++.+.+++++.++
T Consensus 97 ~al~si~~~s~~~i~S~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~-~~~~~~~~~~~i~~~ 174 (312)
T TIGR00585 97 EALASISSVSRLTITTKTSAADGLAWQALLE-GGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRK-FLKSPKKEFRKILDL 174 (312)
T ss_pred hHHHHHHhhCcEEEEEeecCCCcceEEEEEC-CCcCcccccccCCCccEEEEchhhccCchhhh-hccCcHHHHHHHHHH
Confidence 999999999999999998 677778888733 33233444556789999999999999999998 778889999999999
Q ss_pred HHHhhhhcCCCC
Q psy13669 160 LYGYCLVALGVK 171 (172)
Q Consensus 160 l~~~a~~~p~i~ 171 (172)
++.||+.||+|+
T Consensus 175 l~~~al~~p~i~ 186 (312)
T TIGR00585 175 LNRYALIHPDVS 186 (312)
T ss_pred HHHHhhcCCCeE
Confidence 999999999974
No 4
>KOG1979|consensus
Probab=100.00 E-value=2.7e-36 Score=255.71 Aligned_cols=169 Identities=33% Similarity=0.545 Sum_probs=160.7
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.+|..||+|||+||+||+++.|.|.+.+++..-+.|+|||.||..++++-+|++|.|||...++|+.+..+|||||
T Consensus 22 GEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGFRG 101 (694)
T KOG1979|consen 22 GEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGFRG 101 (694)
T ss_pred cchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCccH
Confidence 58999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEE-EeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIK-TKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQV 159 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~ 159 (172)
.+|+|++.+++|+|+|+..+..++|+..|- +|.+. ...|+....||+|+++|||+|+|.|++.+ ++...++.+|.++
T Consensus 102 EALASiShVA~VtV~TK~~~~~cayrasY~-DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrkal-~~~~EE~~ki~dl 179 (694)
T KOG1979|consen 102 EALASISHVAHVTVTTKTAEGKCAYRASYR-DGKMIATPKPCAGKQGTIITVEDLFYNMPTRRKAL-RNHAEEYRKIMDL 179 (694)
T ss_pred HHHhhhhheeEEEEEEeecCceeeeEEEee-ccccccCCCCccCCCceEEEehHhhccCHHHHHHh-cCcHHHHHHHHHH
Confidence 999999999999999999999999999997 89887 56678899999999999999999999954 7888999999999
Q ss_pred HHHhhhhcCCCC
Q psy13669 160 LYGYCLVALGVK 171 (172)
Q Consensus 160 l~~~a~~~p~i~ 171 (172)
+.+||++||+|.
T Consensus 180 v~ryAIHn~~Vs 191 (694)
T KOG1979|consen 180 VGRYAIHNPRVS 191 (694)
T ss_pred HHHHheeCCCcc
Confidence 999999999984
No 5
>KOG1978|consensus
Probab=100.00 E-value=1.4e-35 Score=255.74 Aligned_cols=171 Identities=53% Similarity=0.867 Sum_probs=165.0
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.++..||+|||+||+||||+.|.|.+.+.+...|.|.|||+||++.+.+.++..++|||..++.|+....++||||
T Consensus 15 ~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~GFRG 94 (672)
T KOG1978|consen 15 SQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLGFRG 94 (672)
T ss_pred CCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhhhHH
Confidence 58999999999999999999999999999988788899999999999999999999999999999999998999999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVL 160 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l 160 (172)
.+|.++|+++.|+|.|++.+...+.++.++++|.++...++.++.||||.+.+||+++|+|+++|.++++++|.++..++
T Consensus 95 EALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~ar~~GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i~li 174 (672)
T KOG1978|consen 95 EALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKKPVARGRGTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLISLI 174 (672)
T ss_pred HHHHhhhhccceEEEEeeccCccceeEEEccCCceeeeccccCCCCCEEEHhhhcccCCCchHHhhcchhhhhhhHHhhH
Confidence 99999999999999999998889999999999999988899999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCC
Q psy13669 161 YGYCLVALGVK 171 (172)
Q Consensus 161 ~~~a~~~p~i~ 171 (172)
+.||+++++|+
T Consensus 175 ~~y~li~~~ir 185 (672)
T KOG1978|consen 175 QAYALISTAIK 185 (672)
T ss_pred HHHHhhcccce
Confidence 99999999986
No 6
>KOG1977|consensus
Probab=99.92 E-value=3.3e-26 Score=198.14 Aligned_cols=167 Identities=34% Similarity=0.507 Sum_probs=142.7
Q ss_pred eeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
+|.++.+++.||+.||+||+|+.|.|.+ +.....+.|.|||.||..+++..+..+++|||.....+.....+||++|.+
T Consensus 18 ~~~sla~~VeElv~NSiDA~At~V~v~V-~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeA 96 (1142)
T KOG1977|consen 18 AISSLAQCVEELVLNSIDAEATCVAVRV-NMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEA 96 (1142)
T ss_pred hHHHHHHHHHHHHhhccccCceEEEEEe-cCceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhh
Confidence 5788999999999999999999999999 456788999999999999999999999999999876677788899999999
Q ss_pred hcccccccceEEEEeecCCCceEEEE-EecCCeE---EEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHH
Q psy13669 83 LSSLCALSSVVIVTRHKLSGVGHWLE-FDHHGHI---KTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQ 158 (172)
Q Consensus 83 l~s~~~~~~v~i~T~~~~~~~~~~~~-~~~~g~~---~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~ 158 (172)
|++++-++.+.+.|+..+...+|... +. .|.- ..-...+...||+|+|.|||+++|+|+++-...++++|+.|.+
T Consensus 97 LasIsd~s~l~v~skkk~r~~~~~~kk~~-~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRRr~k~~~P~k~fe~Ik~ 175 (1142)
T KOG1977|consen 97 LASISDMSSLVVISKKKNRTMKTFVKKFQ-SGSALKALEIDVTRASSGTTVTVYDLFYQLPVRRRLKCMDPRKEFEKIKQ 175 (1142)
T ss_pred hhhhhhhhhhhhhhhhcCCchhHHHHHHh-ccccceecccccccccCCcEEEeHHhhhcchhhhhhhcCCHHHHHHHHHH
Confidence 99999999999999988876555422 22 2221 1222346789999999999999999998444578999999999
Q ss_pred HHHHhhhhcCCCC
Q psy13669 159 VLYGYCLVALGVK 171 (172)
Q Consensus 159 ~l~~~a~~~p~i~ 171 (172)
.+.+.++.||.|.
T Consensus 176 ~i~~i~lmHp~iS 188 (1142)
T KOG1977|consen 176 RIEAISLMHPSIS 188 (1142)
T ss_pred HHHHHHhhcccee
Confidence 9999999999874
No 7
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.89 E-value=1.4e-22 Score=178.98 Aligned_cols=148 Identities=25% Similarity=0.295 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEeC-CceEEEEEeCCCCCChhhHHhhhccCc-cCCcccccccccccccCc
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKDY-GSELVEVTDNGGGVHEDNYEGLTLKHH-TSKLREFTDLTSVETFGF 78 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~~-~~~~i~V~DnG~Gi~~~~l~~~~~~~~-~sk~~~~~~~~~~~~~G~ 78 (172)
.+.+++.|||+||+||++. .|.|.+... ....|.|.|||+||++++++.+|.+|+ ++|+.... .+.|+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~srG~ 120 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSRGQ 120 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCCCC
Confidence 4789999999999999865 578887653 446899999999999999999999986 77765421 35688
Q ss_pred ccchhcccccccc------eEEEEeecCCCce--EEEEEecC---CeEE--EeeeecCCCceEEEEcccccCChHhHHHH
Q psy13669 79 RGEALSSLCALSS------VVIVTRHKLSGVG--HWLEFDHH---GHIK--TKTLVSRQVGTTVSLHNIFSTLPVRQKEF 145 (172)
Q Consensus 79 ~G~gl~s~~~~~~------v~i~T~~~~~~~~--~~~~~~~~---g~~~--~~~~~~~~~GT~V~i~~lf~~~p~r~~~~ 145 (172)
+|+||+++...+. +.|.|+..+...+ +.+.++.. +.+. ...+....+||+|+|+ ||+|+|.|++
T Consensus 121 rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~k-- 197 (795)
T PRK14868 121 QGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQQ-- 197 (795)
T ss_pred CceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhhh--
Confidence 8999877665554 6899998776555 46666622 1332 2234467899999999 9999998743
Q ss_pred hHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 146 HRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 146 ~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+.++++++|++||+++
T Consensus 198 ----------I~eyl~r~Al~nP~a~ 213 (795)
T PRK14868 198 ----------LHDYIKHTAVVNPHAR 213 (795)
T ss_pred ----------HHHHHHHHHhhCCCeE
Confidence 8889999999999984
No 8
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.88 E-value=2.9e-22 Score=171.43 Aligned_cols=151 Identities=24% Similarity=0.274 Sum_probs=119.0
Q ss_pred ccHHHHHHHHHHhHhhcCCC-----eEEEEEEeC--CceEEEEEeCCCCCChhhHHhhhcc-CccCCccccccccccccc
Q psy13669 5 LNLATAVKELVENSLDAGAT-----SVEVKLKDY--GSELVEVTDNGGGVHEDNYEGLTLK-HHTSKLREFTDLTSVETF 76 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~a~-----~i~i~~~~~--~~~~i~V~DnG~Gi~~~~l~~~~~~-~~~sk~~~~~~~~~~~~~ 76 (172)
..+.+++.|||+||+||++. .|.|.+... +...|.|.|||+||++++++.+|.+ ++++|+.+ ...+.
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~-----~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR-----IIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc-----ccccC
Confidence 46789999999999999865 678877542 3458999999999999999999998 56677643 23466
Q ss_pred Ccccchhcccccccc------eEEEEeecCCCceEEEEEe-----cCCeEEEeeeecC--CCceEEEEcccccCChHhHH
Q psy13669 77 GFRGEALSSLCALSS------VVIVTRHKLSGVGHWLEFD-----HHGHIKTKTLVSR--QVGTTVSLHNIFSTLPVRQK 143 (172)
Q Consensus 77 G~~G~gl~s~~~~~~------v~i~T~~~~~~~~~~~~~~-----~~g~~~~~~~~~~--~~GT~V~i~~lf~~~p~r~~ 143 (172)
|++|+||+++..+++ ++|.|+..+...++.+.+. +.|.+....+... .+||+|+++ |.++|.|.+
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~~~~~r~~ 179 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FKGVSYRRS 179 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--ECCceeecc
Confidence 899999998777765 8999999887777788875 3576655444322 479999999 888887732
Q ss_pred HHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 144 EFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 144 ~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
...+.++++++|++||+++
T Consensus 180 ---------k~~i~e~l~~~Al~nP~~~ 198 (488)
T TIGR01052 180 ---------KQGVYEYLRRTAVANPHAK 198 (488)
T ss_pred ---------HHHHHHHHHHHHhhCCCeE
Confidence 1689999999999999985
No 9
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.88 E-value=1.5e-22 Score=178.62 Aligned_cols=150 Identities=25% Similarity=0.282 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHhHhh---c-CCCeEEEEEEeCCceEEEEEeCCCCCChhh--------HHhhh-ccCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLD---A-GATSVEVKLKDYGSELVEVTDNGGGVHEDN--------YEGLT-LKHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~d---a-~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~~~-~~~~~sk~~~~~~~~~ 72 (172)
++.++|.|||+||+| | .|+.|.|.++.+ ..|+|.|||+|||.+. ++.+| ..+.+||+++. .+.
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d--~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~--~~~ 105 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGFASIIMVILHQD--QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK--NYH 105 (625)
T ss_pred CcceeehhhhhcccchhhcCCCCEEEEEEeCC--CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC--cce
Confidence 567899999999999 8 599999999654 4799999999999988 77777 88999998753 233
Q ss_pred ccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEE-Eee---ee-cCCCceEEEEcccccCChHhHHHHh
Q psy13669 73 VETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIK-TKT---LV-SRQVGTTVSLHNIFSTLPVRQKEFH 146 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~-~~~---~~-~~~~GT~V~i~~lf~~~p~r~~~~~ 146 (172)
.+.|++|+|+++++++|+ ++|.|++.+.. |.+.|. .|... ... ++ ...+||+|++ +|+| + ++
T Consensus 106 -~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~-~G~~~~~~~~i~~~~~~~~GT~V~F------~PD~-~-~F 173 (625)
T TIGR01055 106 -FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFE-NGAKVTDLISAGTCGKRLTGTSVHF------TPDP-E-IF 173 (625)
T ss_pred -ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEE-CCeEccccccccccCCCCCCeEEEE------EECH-H-HC
Confidence 678999999999999998 99999987654 899997 66553 211 33 3459999998 4887 3 55
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 147 RHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 147 ~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+..+.+++.+.++++++|++||+|+
T Consensus 174 ~~~~~e~~~i~~~l~~lA~lnpgi~ 198 (625)
T TIGR01055 174 DSLHFSVSRLYHILRAKAVLCRGVE 198 (625)
T ss_pred CCCccCHHHHHHHHHHHHhhCCCcE
Confidence 6777889999999999999999985
No 10
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.86 E-value=9.7e-22 Score=173.92 Aligned_cols=152 Identities=24% Similarity=0.287 Sum_probs=122.8
Q ss_pred eccHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhhHHh--------hhcc-CccCCccccccc
Q psy13669 4 VLNLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDNYEG--------LTLK-HHTSKLREFTDL 70 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~--------~~~~-~~~sk~~~~~~~ 70 (172)
...+.+++.|||+||+|+ .++.|.|.+..++ .|+|.|||+|||.+..+. +|.. +.++|+++. .
T Consensus 35 ~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~--~ 110 (631)
T PRK05559 35 TRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNK--A 110 (631)
T ss_pred CchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCc--c
Confidence 356889999999999998 6889999997554 799999999999998886 6655 788888642 2
Q ss_pred ccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEE----eeeec-CCCceEEEEcccccCChHhHHH
Q psy13669 71 TSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKT----KTLVS-RQVGTTVSLHNIFSTLPVRQKE 144 (172)
Q Consensus 71 ~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~----~~~~~-~~~GT~V~i~~lf~~~p~r~~~ 144 (172)
+. .+.|++|+|+++++++|+ ++|+|++.+.. |.+.|. +|.... ..++. ..+||+|++. |++.+
T Consensus 111 yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~~--~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f~------PD~~i- 179 (631)
T PRK05559 111 YK-FSGGLHGVGVSVVNALSSRLEVEVKRDGKV--YRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRFW------PDPKI- 179 (631)
T ss_pred cc-ccCcccccchhhhhhheeeEEEEEEeCCeE--EEEEEE-CCcCccCccccccccCCCCCcEEEEE------ECHHH-
Confidence 22 578999999999999974 99999986543 888887 665432 22332 6799999984 88865
Q ss_pred HhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 145 FHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 145 ~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
| +..+.+++.+.++++++|++||+++
T Consensus 180 F-~~~~~~~~~i~~~l~~~A~lnpgl~ 205 (631)
T PRK05559 180 F-DSPKFSPERLKERLRSKAFLLPGLT 205 (631)
T ss_pred c-CCcccCHHHHHHHHHHHHhhCCCeE
Confidence 6 6677788999999999999999985
No 11
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.84 E-value=2.1e-21 Score=171.00 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=117.5
Q ss_pred HHHHHHHHHhHhhcC----CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhhc-cCccCCccccccccccc
Q psy13669 8 ATAVKELVENSLDAG----ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLTL-KHHTSKLREFTDLTSVE 74 (172)
Q Consensus 8 ~~~l~eLi~Na~da~----a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~~-~~~~sk~~~~~~~~~~~ 74 (172)
.+++.|||+||+|+. ++.|.|.++.++ .|+|.|||.|||.+..+ .+|. .+.++|+++ .....
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~---~~~k~ 77 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDD---DAYKV 77 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCC---CCccc
Confidence 467899999999997 999999997655 89999999999976543 2333 345566643 23346
Q ss_pred ccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEE-e--eeecCCCceEEEEcccccCChHhHHHHhHhHH
Q psy13669 75 TFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKT-K--TLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLK 150 (172)
Q Consensus 75 ~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~ 150 (172)
+.|++|+|+++++++| .++|+|+..+.. |.+.|..+|.+.. . .+....+||+|++ +|++.+ |....+
T Consensus 78 s~G~~G~Gls~vnalS~~l~v~~~~~g~~--~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~-F~~~~~ 148 (594)
T smart00433 78 SGGLHGVGASVVNALSTEFEVEVARDGKE--YKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEI-FGMTTD 148 (594)
T ss_pred cCCcccchHHHHHHhcCceEEEEEeCCcE--EEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHH-hCCccc
Confidence 7899999999999997 599999987654 8999975576653 1 3345689999995 488776 755557
Q ss_pred HHHHHHHHHHHHhhhhcCCCC
Q psy13669 151 KEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 151 ~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+++.|.++++.+|++||+|+
T Consensus 149 ~~~~~i~~rl~~~A~l~pgl~ 169 (594)
T smart00433 149 DDFELLKRRLRELAFLNKGVK 169 (594)
T ss_pred chHHHHHHHHHHHHhcCCCcE
Confidence 899999999999999999985
No 12
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.84 E-value=5.4e-21 Score=170.83 Aligned_cols=149 Identities=28% Similarity=0.431 Sum_probs=120.6
Q ss_pred cHHHHHHHHHHhHhh---cC-CCeEEEEEEeCCceEEEEEeCCCCCChh----------hHHhhhccCccCCcccccccc
Q psy13669 6 NLATAVKELVENSLD---AG-ATSVEVKLKDYGSELVEVTDNGGGVHED----------NYEGLTLKHHTSKLREFTDLT 71 (172)
Q Consensus 6 ~~~~~l~eLi~Na~d---a~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~----------~l~~~~~~~~~sk~~~~~~~~ 71 (172)
-+.+++.|||+||+| |+ ++.|.|.++.++ .|+|.|||.|||.+ ++. +...+.++|+++ +.+
T Consensus 37 GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h~~~g~~~~Elv-lt~lhAggKfd~--~~y 111 (756)
T PRK14939 37 GLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIHPEEGVSAAEVI-MTVLHAGGKFDQ--NSY 111 (756)
T ss_pred chhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCcccccCCchhhhe-eeeecccCCCCC--Ccc
Confidence 468999999999999 88 899999997554 89999999999987 222 346678889865 334
Q ss_pred cccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEe-ee--ecCCCceEEEEcccccCChHhHHHHhH
Q psy13669 72 SVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTK-TL--VSRQVGTTVSLHNIFSTLPVRQKEFHR 147 (172)
Q Consensus 72 ~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~GT~V~i~~lf~~~p~r~~~~~~ 147 (172)
.. +.|++|+|+++++++|+ ++|+|++.+.. |.+.|. .|.+... .. ....+||+|++. |++.+ | +
T Consensus 112 kv-SgGlhGvG~svvNAlS~~l~v~v~r~gk~--~~q~f~-~G~~~~~l~~~g~~~~~GT~V~F~------PD~~i-F-~ 179 (756)
T PRK14939 112 KV-SGGLHGVGVSVVNALSEWLELTIRRDGKI--HEQEFE-HGVPVAPLKVVGETDKTGTEVRFW------PSPEI-F-E 179 (756)
T ss_pred cc-cCCccCccceEeehccCeEEEEEEeCCeE--EEEEEe-cCccccCccccCCcCCCCcEEEEE------ECHHH-c-C
Confidence 44 78999999999999997 99999987654 899997 5654431 21 236799999984 88876 6 6
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 148 HLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 148 ~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
....+++.|.++++.+|++||+|+
T Consensus 180 ~~~~~~~~i~~rl~elA~lnpgl~ 203 (756)
T PRK14939 180 NTEFDYDILAKRLRELAFLNSGVR 203 (756)
T ss_pred CcccCHHHHHHHHHHHhhcCCCCE
Confidence 677889999999999999999985
No 13
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.84 E-value=7e-21 Score=168.59 Aligned_cols=150 Identities=26% Similarity=0.375 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHhHhh---cC-CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLD---AG-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~d---a~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~~~~~~ 72 (172)
.+.+++.|||+||+| |+ ++.|.|.++.++ .|+|.|||+|||.+..+ .+| ..+.++|+++. ..
T Consensus 37 gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~---~y 111 (638)
T PRK05644 37 GLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG---GY 111 (638)
T ss_pred hHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC---cc
Confidence 467899999999999 88 999999997554 79999999999986432 233 33566777542 22
Q ss_pred ccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEe-eee--cCCCceEEEEcccccCChHhHHHHhHh
Q psy13669 73 VETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTK-TLV--SRQVGTTVSLHNIFSTLPVRQKEFHRH 148 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~-~~~--~~~~GT~V~i~~lf~~~p~r~~~~~~~ 148 (172)
..+.|++|+|+++++.+|+ ++|+|++.+. .|.+.|. +|..... .+. ...+||+|++ +|++.+ | +.
T Consensus 112 k~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~-~G~~~~~~~~~~~~~~~GT~I~F------~Pd~~~-F-~~ 180 (638)
T PRK05644 112 KVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYE-RGVPVTPLEVIGETDETGTTVTF------KPDPEI-F-ET 180 (638)
T ss_pred cccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEE-CCeEccCccccCCcCCCCcEEEE------EECHHH-c-CC
Confidence 3478999999999999997 9999997665 6899998 6765522 222 2679999996 588876 7 67
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 149 LKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 149 ~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+.++..|.++++.+|++||+|+
T Consensus 181 ~~~e~~~i~~rl~~~A~l~pgl~ 203 (638)
T PRK05644 181 TEFDYDTLATRLRELAFLNKGLK 203 (638)
T ss_pred cccCHHHHHHHHHHHHhhCCCcE
Confidence 78889999999999999999985
No 14
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.84 E-value=7.1e-21 Score=169.28 Aligned_cols=151 Identities=28% Similarity=0.331 Sum_probs=118.4
Q ss_pred ccHHHHHHHHHHhHhh---cC-CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCcccccccc
Q psy13669 5 LNLATAVKELVENSLD---AG-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREFTDLT 71 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~d---a~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~~~~~ 71 (172)
..+.+++.|||+||+| |+ ++.|.|.++.++ .|+|.|||+|||.+..+ .+| ..+.++|+++ ..
T Consensus 29 ~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~---~~ 103 (654)
T TIGR01059 29 TGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG--SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK---DS 103 (654)
T ss_pred chHHhhhHHhhhccccccccCCCCEEEEEEeCCC--cEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC---Cc
Confidence 3467899999999999 88 999999997554 59999999999986322 233 3356667643 22
Q ss_pred cccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEE---eeeecCCCceEEEEcccccCChHhHHHHhH
Q psy13669 72 SVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKT---KTLVSRQVGTTVSLHNIFSTLPVRQKEFHR 147 (172)
Q Consensus 72 ~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~ 147 (172)
...+.|++|+|+++++++|+ ++|+|++.+.. |.+.|. +|.+.. ..+....+||+|+ |++.|.+ |.
T Consensus 104 ~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~-~G~~~~~l~~~~~~~~~GT~V~----F~pdp~~---F~- 172 (654)
T TIGR01059 104 YKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFE-RGIPLGPLEVVGETKKTGTTVR----FWPDPEI---FE- 172 (654)
T ss_pred ceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEe-CCCcccCceeccCCCCCCcEEE----EEEChHH---hC-
Confidence 33578999999999999998 99999986654 889997 666543 3344678999999 6677763 65
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 148 HLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 148 ~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
..+.++..|.++++.+|++||+|+
T Consensus 173 ~~~~e~~~i~~rl~~~A~l~pgl~ 196 (654)
T TIGR01059 173 TTEFDFDILAKRLRELAFLNSGVK 196 (654)
T ss_pred CcccCHHHHHHHHHHhhccCCCeE
Confidence 667789999999999999999985
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.84 E-value=3.5e-20 Score=160.18 Aligned_cols=149 Identities=25% Similarity=0.268 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEe----CCceEEEEEeCCCCCChhhHHhhhccC-ccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKD----YGSELVEVTDNGGGVHEDNYEGLTLKH-HTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~----~~~~~i~V~DnG~Gi~~~~l~~~~~~~-~~sk~~~~~~~~~~~~ 75 (172)
.+.+++.|||+||+||++. .|.|.+.. .+...|.|.|||+||++++++.+|.++ +++|+... ..+
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~s 110 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQS 110 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----ccC
Confidence 4789999999999999865 57777752 345789999999999999999999886 66665321 235
Q ss_pred cCcccchhcccccccc------eEEEEeecCCCceEEEEEe-----cCCeEEEee--eecCCCceEEEEcccccCChHhH
Q psy13669 76 FGFRGEALSSLCALSS------VVIVTRHKLSGVGHWLEFD-----HHGHIKTKT--LVSRQVGTTVSLHNIFSTLPVRQ 142 (172)
Q Consensus 76 ~G~~G~gl~s~~~~~~------v~i~T~~~~~~~~~~~~~~-----~~g~~~~~~--~~~~~~GT~V~i~~lf~~~p~r~ 142 (172)
.|.+|+||+++..+++ ++|.|+..+....+.+.+. +.|.+.... +....+||+|+|. ++.+++.+
T Consensus 111 ~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~- 188 (535)
T PRK04184 111 RGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA- 188 (535)
T ss_pred CCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh-
Confidence 6888999987665542 7899988666545666664 234444332 2356799999998 67777643
Q ss_pred HHHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 143 KEFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 143 ~~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+++.++++++|++||+++
T Consensus 189 ----------~~~I~e~i~r~Al~nP~~~ 207 (535)
T PRK04184 189 ----------KQRIYEYLKRTAIVNPHAR 207 (535)
T ss_pred ----------HHHHHHHHHHHHHhCCCeE
Confidence 3689999999999999985
No 16
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.81 E-value=1.5e-19 Score=158.99 Aligned_cols=148 Identities=23% Similarity=0.267 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEeC--CceEEEEEeCCCCCChhhHHhhhcc-CccCCcccccccccccccC
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKDY--GSELVEVTDNGGGVHEDNYEGLTLK-HHTSKLREFTDLTSVETFG 77 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~~--~~~~i~V~DnG~Gi~~~~l~~~~~~-~~~sk~~~~~~~~~~~~~G 77 (172)
.+.+++.|||+||+||++. .|.|.+... +...|.|.|||+||++++++.+|.+ +.+||+... ..+.|
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~qS~G 110 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQSRG 110 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----eccCC
Confidence 4569999999999999865 688888643 3467999999999999999999999 556776432 34678
Q ss_pred cccchhcccccccc------eEEEEeecCCC---ceEEEEEe-cCCeEEEe-eeecCCCceEEE--EcccccCChHhHHH
Q psy13669 78 FRGEALSSLCALSS------VVIVTRHKLSG---VGHWLEFD-HHGHIKTK-TLVSRQVGTTVS--LHNIFSTLPVRQKE 144 (172)
Q Consensus 78 ~~G~gl~s~~~~~~------v~i~T~~~~~~---~~~~~~~~-~~g~~~~~-~~~~~~~GT~V~--i~~lf~~~p~r~~~ 144 (172)
++|+||+++..+++ +.+.|+..+.. ..+.+.++ +.|.+... .+....+||+|+ |++||+| |+
T Consensus 111 ~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R~-- 185 (659)
T PRK14867 111 QQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---RR-- 185 (659)
T ss_pred CCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---hh--
Confidence 89999987665554 47888875443 22334442 24666554 344568999999 9999988 32
Q ss_pred HhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 145 FHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 145 ~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+.. +.++++++|++|||++
T Consensus 186 -------E~~-i~e~l~r~ALanP~i~ 204 (659)
T PRK14867 186 -------EQG-PFEYLRRISLSTPHAK 204 (659)
T ss_pred -------hHH-HHHHHHHHHHhCCCcE
Confidence 223 8999999999999985
No 17
>PRK05218 heat shock protein 90; Provisional
Probab=99.80 E-value=4.2e-19 Score=156.86 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=109.7
Q ss_pred ceeccHHHHHHHHHHhHhhcC----------------CC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAG----------------AT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~----------------a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
.+++++..+|+|||+||.||. +. .|.|.+.. +...|.|.|||+||+.+++...+....+|.
T Consensus 22 ~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg 100 (613)
T PRK05218 22 SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK-EARTLTISDNGIGMTREEVIENLGTIAKSG 100 (613)
T ss_pred hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC-CCCeEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 467899999999999999993 22 45665543 334699999999999999999887777663
Q ss_pred cccc------cccccccccCcccchhccccccc-ceEEEEeecC-CCceEEEEEecCCeEEEeeee-cCCCceEEEEccc
Q psy13669 64 LREF------TDLTSVETFGFRGEALSSLCALS-SVVIVTRHKL-SGVGHWLEFDHHGHIKTKTLV-SRQVGTTVSLHNI 134 (172)
Q Consensus 64 ~~~~------~~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~GT~V~i~~l 134 (172)
...+ ........+|.+|+|++|+++++ +|+|.|++.+ ...++.|..+.++.+. ..+. ...+||+|+|. |
T Consensus 101 ~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~-i~~~~~~~~GT~I~l~-L 178 (613)
T PRK05218 101 TKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYT-IEEIEKEERGTEITLH-L 178 (613)
T ss_pred chhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeE-EeECCCCCCCcEEEEE-E
Confidence 2111 00113467899999999998887 6999999977 5668888887444443 2333 24899999995 1
Q ss_pred ccCChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 135 FSTLPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 135 f~~~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
-|.. .+|+ +..++.+++..|| +.+|
T Consensus 179 ---k~~~-~e~~-----e~~~i~~li~kys~~l~~P 205 (613)
T PRK05218 179 ---KEDE-DEFL-----DEWRIRSIIKKYSDFIPVP 205 (613)
T ss_pred ---Ccch-hhhc-----CHHHHHHHHHHHHhcCCCC
Confidence 1111 1121 2467889999999 6666
No 18
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-18 Score=147.20 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=107.8
Q ss_pred eeccHHHHHHHHHHhHhhcC------------------CCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 3 VVLNLATAVKELVENSLDAG------------------ATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~------------------a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++.+..|+|||+||.||. .-.|.|.+ +.+...++|.|||+||+.+++.......+.|-.
T Consensus 24 lYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~-Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 24 LYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF-DKDNKTLTISDNGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred ccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE-cccCCEEEEEeCCCCCCHHHHHHHHHHhhhccH
Confidence 56788899999999999983 12355555 445678999999999999998864433222211
Q ss_pred c----c-ccccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEeeeecCC-CceEEEEcccccC
Q psy13669 65 R----E-FTDLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQ-VGTTVSLHNIFST 137 (172)
Q Consensus 65 ~----~-~~~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~GT~V~i~~lf~~ 137 (172)
. . .++......+|.+|+|++|.+.++. |+|.|+..+....+.|+.+.+|.++.......+ +||+|++.=
T Consensus 103 ~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~~~~~~GT~I~L~L---- 178 (623)
T COG0326 103 KEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEPRRGTEITLHL---- 178 (623)
T ss_pred HHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeeccCCCCCCcEEEEEE----
Confidence 1 1 0111345678999999999999995 999999999888888888877877755444445 699999861
Q ss_pred ChHhHHHHhHhHHHHHHHHHHHHHHhhhh
Q psy13669 138 LPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166 (172)
Q Consensus 138 ~p~r~~~~~~~~~~~~~~i~~~l~~~a~~ 166 (172)
.|... +|+. --+|.+++..|+-.
T Consensus 179 k~~e~-efl~-----~~rl~~ivkkYSd~ 201 (623)
T COG0326 179 KEEED-EFLE-----EWRLREIVKKYSDH 201 (623)
T ss_pred CCchH-HHhh-----hhHHHHHHHHHhcc
Confidence 13222 2432 23788888888754
No 19
>PRK14083 HSP90 family protein; Provisional
Probab=99.76 E-value=8.5e-18 Score=147.82 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=96.8
Q ss_pred ceeccHHHHHHHHHHhHhhcCCC----------eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhcc-CccCCccccccc
Q psy13669 2 AVVLNLATAVKELVENSLDAGAT----------SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLK-HHTSKLREFTDL 70 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a~----------~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~-~~~sk~~~~~~~ 70 (172)
.+++++..+|+|||+||.||.+. .|.|.+.+.+...|+|.|||+||+.+++...+.. +.+++....-..
T Consensus 19 ~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~ 98 (601)
T PRK14083 19 HLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGF 98 (601)
T ss_pred hhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcc
Confidence 46889999999999999999754 6777773334568999999999999999986544 444443211001
Q ss_pred ccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEee--eecCCCceEEEEc
Q psy13669 71 TSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKT--LVSRQVGTTVSLH 132 (172)
Q Consensus 71 ~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~GT~V~i~ 132 (172)
.....+|.+|+|++|+++++. ++|.|+..+...++.|....+|.+.... .....+||+|++.
T Consensus 99 ~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~ 163 (601)
T PRK14083 99 ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLR 163 (601)
T ss_pred cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEE
Confidence 124568999999999999985 9999999755556777766667665332 2356899999997
No 20
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.2e-18 Score=143.20 Aligned_cols=152 Identities=24% Similarity=0.264 Sum_probs=107.6
Q ss_pred eccHHHHHHHHHHhHhhcCCC-----eEEEEEEe--CCceEEEEEeCCCCCChhhHHhhhcc-CccCCcccccccccccc
Q psy13669 4 VLNLATAVKELVENSLDAGAT-----SVEVKLKD--YGSELVEVTDNGGGVHEDNYEGLTLK-HHTSKLREFTDLTSVET 75 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~a~-----~i~i~~~~--~~~~~i~V~DnG~Gi~~~~l~~~~~~-~~~sk~~~~~~~~~~~~ 75 (172)
+.++.+.++|||+||+||+.. .|.|.+.. .+...+.|+|||+|||.++++++|.. +++||++.. +++
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~-----~Qs 108 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRN-----IQS 108 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhh-----hhc
Confidence 568999999999999999742 56777653 56788999999999999999998876 688898532 334
Q ss_pred cCcccch-----hcccccccc-eEEEEeecCCCceEE--EEEe---cCCeEEEee---eecCCCceEEEEcccccCChHh
Q psy13669 76 FGFRGEA-----LSSLCALSS-VVIVTRHKLSGVGHW--LEFD---HHGHIKTKT---LVSRQVGTTVSLHNIFSTLPVR 141 (172)
Q Consensus 76 ~G~~G~g-----l~s~~~~~~-v~i~T~~~~~~~~~~--~~~~---~~g~~~~~~---~~~~~~GT~V~i~~lf~~~p~r 141 (172)
.|..|+| |+|....++ +.|.|.+.++...+. +.++ +.+.++... .....|||+|++. +-.+|..+
T Consensus 109 RGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~ 187 (538)
T COG1389 109 RGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRA 187 (538)
T ss_pred cccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhh
Confidence 5566666 455555565 999999987654444 4444 223344331 2245799999986 22334433
Q ss_pred HHHHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 142 QKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
++ +-+.+++++.|++|||.+
T Consensus 188 ~~----------qgi~eYlkrtaiinPhA~ 207 (538)
T COG1389 188 KR----------QGIYEYLKRTAIINPHAR 207 (538)
T ss_pred cc----------cCHHHHHHHHhhcCCceE
Confidence 22 348889999999999974
No 21
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.73 E-value=2.1e-18 Score=125.78 Aligned_cols=100 Identities=24% Similarity=0.440 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEEeC--CceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch-h
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLKDY--GSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA-L 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~~~--~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g-l 83 (172)
+..||.|||+||+||.++.|.|.+... +...|.|.|||.||+++++..++..+.+++... .....+|.+|+| .
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~k 78 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGLK 78 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGCG
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEHH
Confidence 478999999999999999999999642 456899999999999999999777666665421 124568999999 5
Q ss_pred ccccccc-ceEEEEeecCCCceEEEEEe
Q psy13669 84 SSLCALS-SVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 84 ~s~~~~~-~v~i~T~~~~~~~~~~~~~~ 110 (172)
.|+..++ .++|.|++.+....+.+.++
T Consensus 79 ~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 79 LAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred HHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 5555555 69999999988877777765
No 22
>PTZ00130 heat shock protein 90; Provisional
Probab=99.71 E-value=4.5e-17 Score=145.73 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=103.2
Q ss_pred eeccHHHHHHHHHHhHhhcCC----------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcc
Q psy13669 3 VVLNLATAVKELVENSLDAGA----------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLR 65 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a----------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~ 65 (172)
++++...+|+|||+||.||.. ..+.|++. +.....|+|.|||+||+.+++...+...+.|...
T Consensus 85 LYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~ 164 (814)
T PTZ00130 85 LYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTS 164 (814)
T ss_pred cCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcccccH
Confidence 577888899999999999963 23455553 2345589999999999999988755444333211
Q ss_pred cc----cc-cccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEEEccccc
Q psy13669 66 EF----TD-LTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVSLHNIFS 136 (172)
Q Consensus 66 ~~----~~-~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~i~~lf~ 136 (172)
.+ .+ ......+|.+|+|++|+++++. |+|.|+..+ ..+|.|..+.+|.+.-... ...++||+|++.=
T Consensus 165 ~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhL--- 240 (814)
T PTZ00130 165 NFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHL--- 240 (814)
T ss_pred HHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEE---
Confidence 11 11 1124578999999999999985 999999866 4468888776677654332 2357999999861
Q ss_pred CChHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 137 TLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 137 ~~p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
-+.. .+|+ +-.+|.+++..|+-
T Consensus 241 -ked~-~efl-----~~~~ik~likkYS~ 262 (814)
T PTZ00130 241 -KEDA-TNLM-----NDKKLVDLISKYSQ 262 (814)
T ss_pred -CCch-hhhc-----cHHHHHHHHHHhhc
Confidence 1211 2232 23477777777764
No 23
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.67 E-value=2.8e-16 Score=139.91 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=102.7
Q ss_pred eeccHHHHHHHHHHhHhhcCC----------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcc
Q psy13669 3 VVLNLATAVKELVENSLDAGA----------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLR 65 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a----------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~ 65 (172)
++++....|+|||+||.||+. ..+.|.+. +.....|+|.|||+||+.+++...+...+.|-..
T Consensus 22 lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~ 101 (701)
T PTZ00272 22 FYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTK 101 (701)
T ss_pred ccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhcchH
Confidence 567788899999999999942 23455553 3345689999999999999988755443332111
Q ss_pred cc----cccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEeee--ecCCCceEEEEcccccCC
Q psy13669 66 EF----TDLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKTL--VSRQVGTTVSLHNIFSTL 138 (172)
Q Consensus 66 ~~----~~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~i~~lf~~~ 138 (172)
.+ ........+|.+|+|++|+++++. |+|.|+..+. .+|.|..+.+|.+..... ....+||+|++.= -
T Consensus 102 ~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~L----k 176 (701)
T PTZ00272 102 AFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLHL----K 176 (701)
T ss_pred HHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEEE----C
Confidence 11 011124578999999999999985 9999998654 578888876677664322 1347999999861 1
Q ss_pred hHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 139 PVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 139 p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
|.. .+|+ +-.+|.+++..|+-
T Consensus 177 ~d~-~ef~-----~~~~i~~li~kYs~ 197 (701)
T PTZ00272 177 EDQ-MEYL-----EPRRLKELIKKHSE 197 (701)
T ss_pred Cch-HHhc-----cHHHHHHHHHHhcc
Confidence 222 2233 22377778888764
No 24
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.64 E-value=5.9e-16 Score=137.12 Aligned_cols=151 Identities=23% Similarity=0.263 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~~~~~~ 72 (172)
-+.+++.|+|+||+|. .++.|.|.++.++ +|+|.|||.|||.+.-+ .+| ..+..+|+++. ..
T Consensus 34 GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~---~y 108 (637)
T TIGR01058 34 GLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQG---GY 108 (637)
T ss_pred hhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCC---cc
Confidence 4678999999999993 4789999997544 79999999999975322 222 22455676431 12
Q ss_pred ccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEe---eeecCCCceEEEEcccccCChHhHHHHhHh
Q psy13669 73 VETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTK---TLVSRQVGTTVSLHNIFSTLPVRQKEFHRH 148 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~ 148 (172)
..+-|++|+|+++++++|+ ++|++++.+. .|...|.+.|..... ......+||+|++. |+... | ..
T Consensus 109 kvSGGlhGvG~svvNAlS~~~~V~v~r~gk--~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F~------PD~~i-F-~~ 178 (637)
T TIGR01058 109 KTAGGLHGVGASVVNALSSWLEVTVKRDGQ--IYQQRFENGGKIVQSLKKIGTTKKTGTLVHFH------PDPTI-F-KT 178 (637)
T ss_pred cccCCcccccccccceeeceEEEEEEECCE--EEEEEEecCCcCcCCcccccCCCCCceEEEEE------eCHHH-c-CC
Confidence 3456999999999999996 9999987664 388888743343321 12345799999975 55433 5 34
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 149 LKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 149 ~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+.+++.|.++++.+|.+||+++
T Consensus 179 ~~f~~d~l~~RlrelA~Ln~GL~ 201 (637)
T TIGR01058 179 TQFNSNIIKERLKESAFLLKKLK 201 (637)
T ss_pred CccCHHHHHHHHHHHhccCCCcE
Confidence 55677889999999999999985
No 25
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.6e-16 Score=137.65 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHhHhhc---C-CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhhc-cCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLDA---G-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLTL-KHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da---~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~~-~~~~sk~~~~~~~~~ 72 (172)
.+.+++.|+|+||+|. + ++.|.|.++.++ +|+|.|||.|||-+.-+ .+|. .+..+|++. +. .
T Consensus 36 GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~--~~-Y 110 (635)
T COG0187 36 GLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDN--DS-Y 110 (635)
T ss_pred cceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCC--Cc-c
Confidence 4667889999999994 2 789999997555 79999999999987633 3333 356778764 11 1
Q ss_pred ccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEE-Eee---e-ecCCCceEEEEcccccCChHhHHHHh
Q psy13669 73 VETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIK-TKT---L-VSRQVGTTVSLHNIFSTLPVRQKEFH 146 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~-~~~---~-~~~~~GT~V~i~~lf~~~p~r~~~~~ 146 (172)
..+-|++|+|...+.++|+ ++|++++.+.- |+..|. +|... ... . ....+||+|++. +.|. . |
T Consensus 111 kvSGGLHGVG~SVVNALS~~l~v~v~r~gk~--y~q~f~-~G~~~~~l~~ig~~~~~~~GT~V~F~----PD~~--i-F- 179 (635)
T COG0187 111 KVSGGLHGVGVSVVNALSTWLEVEVKRDGKI--YRQRFE-RGVPVTPLEVIGSTDTKKTGTKVRFK----PDPE--I-F- 179 (635)
T ss_pred EeecCCCccceEEEecccceEEEEEEECCEE--EEEEEe-CCCcCCCceecccCCCCCCccEEEEE----cChH--h-c-
Confidence 2345899999999999996 99999887654 888998 45442 111 1 245789999965 4443 2 4
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 147 RHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 147 ~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+..+..++.|.++++.+|.+||+++
T Consensus 180 ~~~~f~~~~l~~RlrelA~L~~gl~ 204 (635)
T COG0187 180 GETEFDYEILKRRLRELAFLNKGVK 204 (635)
T ss_pred CCcccCHHHHHHHHHHHhccCCCCE
Confidence 3477889999999999999999985
No 26
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=99.55 E-value=2.7e-15 Score=135.05 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHhHhhc---C-CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCccccc----
Q psy13669 6 NLATAVKELVENSLDA---G-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREFT---- 68 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da---~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~~---- 68 (172)
-+.+++.|+|+||+|. + ++.|.|.++.++ +|+|.|||.|||.+.-+ .+| ..+..+|+++..
T Consensus 129 GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~ 206 (903)
T PTZ00109 129 GLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNS 206 (903)
T ss_pred cceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccccc
Confidence 4567889999999993 2 678999996544 79999999999986543 222 224556664420
Q ss_pred ----------c-----------------------cccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCe
Q psy13669 69 ----------D-----------------------LTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGH 114 (172)
Q Consensus 69 ----------~-----------------------~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~ 114 (172)
+ .....+-|++|+|++.+.++|+ ++|++++.+. .|.+.|. .|.
T Consensus 207 ~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK--~y~q~F~-rG~ 283 (903)
T PTZ00109 207 RSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK--IYSIELS-KGK 283 (903)
T ss_pred cccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE--EEEEEeC-CCc
Confidence 0 0012356899999999999996 9999998765 4889997 665
Q ss_pred EEEe---eeec-CCCceEEEEcccccCChH-hHHHHhHhHH-------------HHHHHHHHHHHHhhhhcCCCC
Q psy13669 115 IKTK---TLVS-RQVGTTVSLHNIFSTLPV-RQKEFHRHLK-------------KEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 115 ~~~~---~~~~-~~~GT~V~i~~lf~~~p~-r~~~~~~~~~-------------~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+... ..+. ..+||+|++. |+ ... |..... ..++.|.++++.+|.+||+++
T Consensus 284 ~v~pLkvig~~~~~tGT~VtF~------PD~~~I-F~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~ 351 (903)
T PTZ00109 284 VTKPLSVFSCPLKKRGTTIHFL------PDYKHI-FKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLT 351 (903)
T ss_pred ccCCccccCCcCCCCceEEEEE------eCcchh-cCccccccccccccccccccCHHHHHHHHHHHhccCCCcE
Confidence 4421 1122 5699999976 44 322 422122 468899999999999999985
No 27
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=99.50 E-value=4.2e-14 Score=124.75 Aligned_cols=151 Identities=23% Similarity=0.241 Sum_probs=104.9
Q ss_pred eccHHHHHHHHHHhHhhc------C-CCeEEEEEEeCCceEEEEEeCCCCCChhhHHh-----------hh-ccCccCCc
Q psy13669 4 VLNLATAVKELVENSLDA------G-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYEG-----------LT-LKHHTSKL 64 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da------~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~-----------~~-~~~~~sk~ 64 (172)
++-+.+++.|+|+||+|. + ++.|.|.++ ++ +|+|.|||.|||.+.... +| ..+..+|+
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg--sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN--QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--EEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 466778899999999993 2 668999996 44 799999999999764321 12 22456677
Q ss_pred ccccccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEe--eeecCCCceEEEEcccccCChHh
Q psy13669 65 REFTDLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTK--TLVSRQVGTTVSLHNIFSTLPVR 141 (172)
Q Consensus 65 ~~~~~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~GT~V~i~~lf~~~p~r 141 (172)
+ +. ...+-|++|+|...+.++|+ ++|+++..+. .|.+.|. +|..... ......+||+|++. |+.
T Consensus 120 d---~~-ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~--~~~q~f~-~G~~~~~~~~~~~~~~GT~V~F~------PD~ 186 (602)
T PHA02569 120 D---DT-NRVTGGMNGVGSSLTNFFSVLFIGETCDGKN--EVTVNCS-NGAENISWSTKPGKGKGTSVTFI------PDF 186 (602)
T ss_pred C---Cc-ceeeCCcCCccceeeeccchhhheEEEcCCE--EEEEEec-CCcccCCcccCCCCCCccEEEEE------ECH
Confidence 3 21 22356999999999999996 8887754332 4888887 5543211 12235699999975 444
Q ss_pred HHHHhH-hH-HHHHHHHHHHHHHhhhhcCCCC
Q psy13669 142 QKEFHR-HL-KKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 142 ~~~~~~-~~-~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.. |.. .+ ...++.|.++++.+|.+||+++
T Consensus 187 ~i-F~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~ 217 (602)
T PHA02569 187 SH-FEVNGLDQQYLDIILDRLQTLAVVFPDIK 217 (602)
T ss_pred HH-hCCCccCccHHHHHHHHHHHHhcCCCCCE
Confidence 33 421 12 2247899999999999999985
No 28
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=99.43 E-value=6.9e-13 Score=124.65 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=108.9
Q ss_pred eeccHHHHHHHHHHhHhhcC--------CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCcc
Q psy13669 3 VVLNLATAVKELVENSLDAG--------ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLR 65 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~--------a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~ 65 (172)
.++-+.+++.|+|+||+|.. ++.|.|.++.+ .-.|+|.|||.|||.+.-+ .+| ..+.++|++
T Consensus 54 ~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d-~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 54 YVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEE-NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred ccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEecc-CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 35678899999999999942 46799998643 2379999999999976432 222 224566765
Q ss_pred cccccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCe--EEEe--eeecC-CCceEEEEcccccCCh
Q psy13669 66 EFTDLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGH--IKTK--TLVSR-QVGTTVSLHNIFSTLP 139 (172)
Q Consensus 66 ~~~~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~--~~~~--~~~~~-~~GT~V~i~~lf~~~p 139 (172)
+. ....+-|++|+|...+..+|+ ++|+++.......|..+|. +|. .... ..+.. .+||+|++. |
T Consensus 133 d~---~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~-~Gm~~~~~p~i~~~~~~~~GT~VtF~------P 202 (1388)
T PTZ00108 133 DT---EKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWT-DNMSKKSEPRITSYDGKKDYTKVTFY------P 202 (1388)
T ss_pred CC---ceeeecccccCCccccccccceEEEEEEECCCCCEEEEEec-CCCcCCCCCccCCCCCCCCceEEEEE------e
Confidence 32 223457999999999999996 9999998744556899997 442 2211 12223 699999975 4
Q ss_pred HhHHHHhHhHHHHHHH---HHHHHHHhhhhcCCCC
Q psy13669 140 VRQKEFHRHLKKEFAK---MTQVLYGYCLVALGVK 171 (172)
Q Consensus 140 ~r~~~~~~~~~~~~~~---i~~~l~~~a~~~p~i~ 171 (172)
+... | ......++. |.++++.+|.++|+|+
T Consensus 203 D~~i-F-~~~~fd~d~~~ll~~Rl~dlA~ln~GLk 235 (1388)
T PTZ00108 203 DYAK-F-GMTEFDDDMLRLLKKRVYDLAGCFGKLK 235 (1388)
T ss_pred CHHH-c-CCCccChHHHHHHHHHHHHHhcCCCCcE
Confidence 4333 4 222333344 9999999999999985
No 29
>PLN03128 DNA topoisomerase 2; Provisional
Probab=99.40 E-value=2.1e-12 Score=120.11 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=106.5
Q ss_pred eeccHHHHHHHHHHhHhhcC-----CCeEEEEEEe-CCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCcccc
Q psy13669 3 VVLNLATAVKELVENSLDAG-----ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREF 67 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~-----a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~ 67 (172)
.++-+.+++.|+|+||+|.. ++.|.|.++. ++ +|+|.|||.|||.+..+ .+| ..+.++|+++.
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~ 126 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN--TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDN 126 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC--eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCc
Confidence 35678899999999999943 4689999964 34 79999999999976433 222 22456776542
Q ss_pred cccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEee----ee-cCCCceEEEEcccccCChHh
Q psy13669 68 TDLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKT----LV-SRQVGTTVSLHNIFSTLPVR 141 (172)
Q Consensus 68 ~~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~----~~-~~~~GT~V~i~~lf~~~p~r 141 (172)
....+-|++|+|...+..+|+ ++|+++.......|+.+|. +|...... .+ ...+||+|++. |+.
T Consensus 127 ---~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~-~G~~~~~~p~i~~~~~~~~GT~ItF~------PD~ 196 (1135)
T PLN03128 127 ---EKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFT-NNMSVKSEPKITSCKASENWTKITFK------PDL 196 (1135)
T ss_pred ---cceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeC-CCcccCCCceeccCCCCCCceEEEEE------ECH
Confidence 223456999999999999996 9999984333445889997 55433211 12 23699999975 443
Q ss_pred HHHHh-HhHHH-HHHHHHHHHHHhh-hhcCCCC
Q psy13669 142 QKEFH-RHLKK-EFAKMTQVLYGYC-LVALGVK 171 (172)
Q Consensus 142 ~~~~~-~~~~~-~~~~i~~~l~~~a-~~~p~i~ 171 (172)
.. |. ..++. .++.+.+.++.+| .++|+++
T Consensus 197 ~i-F~~~~fd~d~~~~l~kRl~elAa~Ln~Glk 228 (1135)
T PLN03128 197 AK-FNMTRLDEDVVALMSKRVYDIAGCLGKKLK 228 (1135)
T ss_pred HH-cCCCccChHHHHHHHHHHHHHHHhCCCCcE
Confidence 32 42 11222 2556888888888 8889875
No 30
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.38 E-value=1.4e-12 Score=90.81 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHhHhhcCCC--eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccc
Q psy13669 5 LNLATAVKELVENSLDAGAT--SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGE 81 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 81 (172)
..+.+++.||++||+++... .|.|.+.. .+...|.|.|+|.||++++++.+|.++++.+... ...+..|+
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~-------~~~~g~Gl 76 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSE-------TSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSS-------GGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccccccc-------cccCCCCh
Confidence 35789999999999998755 88888864 5788999999999999999999999998776521 12234699
Q ss_pred hhccccccc
Q psy13669 82 ALSSLCALS 90 (172)
Q Consensus 82 gl~s~~~~~ 90 (172)
||+.+..++
T Consensus 77 GL~~~~~~~ 85 (111)
T PF02518_consen 77 GLYIVKQIA 85 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766665
No 31
>PLN03237 DNA topoisomerase 2; Provisional
Probab=99.34 E-value=6.1e-12 Score=118.26 Aligned_cols=156 Identities=21% Similarity=0.150 Sum_probs=103.6
Q ss_pred eccHHHHHHHHHHhHhhcC-----CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhh-ccCccCCcccccc
Q psy13669 4 VLNLATAVKELVENSLDAG-----ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLT-LKHHTSKLREFTD 69 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~-----a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~~sk~~~~~~ 69 (172)
++-+.+++.|+|+||+|.. ++.|.|.++.. .-+|+|.|||.|||.+.-. .+| ..+.++|+++.
T Consensus 75 vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~-~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~-- 151 (1465)
T PLN03237 75 VPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVE-QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDN-- 151 (1465)
T ss_pred cchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcC-CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCC--
Confidence 5778899999999999953 46899998622 2279999999999976432 223 22456777542
Q ss_pred cccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecC-CeEEEe--eee-cCCCceEEEEcccccCChHhHHH
Q psy13669 70 LTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHH-GHIKTK--TLV-SRQVGTTVSLHNIFSTLPVRQKE 144 (172)
Q Consensus 70 ~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~-g~~~~~--~~~-~~~~GT~V~i~~lf~~~p~r~~~ 144 (172)
....+-|++|+|...+..+|+ ++|+++.......|+.+|.++ |..... ... ...+||+|++. |+...
T Consensus 152 -~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~------PD~ei- 223 (1465)
T PLN03237 152 -EKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFK------PDLAK- 223 (1465)
T ss_pred -cceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEE------ECHHH-
Confidence 223456999999999999996 999998332334688888732 443321 111 23699999975 44333
Q ss_pred HhHhHHHHHHHH---HHHHHHhh-hhcCCCC
Q psy13669 145 FHRHLKKEFAKM---TQVLYGYC-LVALGVK 171 (172)
Q Consensus 145 ~~~~~~~~~~~i---~~~l~~~a-~~~p~i~ 171 (172)
| .....+++.+ .+.++.+| .+||+|+
T Consensus 224 F-~~~~fd~D~l~~~~rRlrdLAa~LnkGlk 253 (1465)
T PLN03237 224 F-NMTHLEDDVVALMKKRVVDIAGCLGKTVK 253 (1465)
T ss_pred h-CCceEcHHHHHHHHHHHHHHHhccCCCcE
Confidence 4 2233344444 45666667 8899875
No 32
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.31 E-value=5e-12 Score=109.35 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHhHhhcCC----CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcc
Q psy13669 6 NLATAVKELVENSLDAGA----TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLR 65 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a----~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~ 65 (172)
.++|++.|||.||+||-+ ..|+|... +++.+.|+|.|||+||+++.+..+|+||+|+|..
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~ 561 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPV 561 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCcc
Confidence 589999999999999854 36888875 4678999999999999999999999999999953
No 33
>PRK10604 sensor protein RstB; Provisional
Probab=99.23 E-value=4.4e-11 Score=101.86 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhcc
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALSS 85 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 85 (172)
+.+++.|||.||++++...|.|.+. +++...|.|.|||+||++++++.+|++|++..... .... |..|+||+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~-----~~~~-~g~GLGL~i 393 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSR-----DRAT-GGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCC-----CCCC-CCccchHHH
Confidence 6789999999999999888888885 35668899999999999999999999998754321 1112 334899886
Q ss_pred ccccc
Q psy13669 86 LCALS 90 (172)
Q Consensus 86 ~~~~~ 90 (172)
+..+.
T Consensus 394 vk~i~ 398 (433)
T PRK10604 394 VHSIA 398 (433)
T ss_pred HHHHH
Confidence 65543
No 34
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.23 E-value=3.6e-11 Score=101.93 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHhhcCCC------eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcc
Q psy13669 7 LATAVKELVENSLDAGAT------SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFR 79 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~------~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 79 (172)
+.+++.||+.||++|.+. .|.|... .++...++|.|||+|||++.+.++|++|+++|... ..| .
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--------~~G-~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--------RKH-I 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--------CCC-C
Confidence 688999999999998533 3666554 35678999999999999999999999999887532 123 4
Q ss_pred cchhcccccc
Q psy13669 80 GEALSSLCAL 89 (172)
Q Consensus 80 G~gl~s~~~~ 89 (172)
|+||+.+..+
T Consensus 459 GlGL~i~~~i 468 (494)
T TIGR02938 459 GMGLSVAQEI 468 (494)
T ss_pred cccHHHHHHH
Confidence 8898876554
No 35
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.16 E-value=1.4e-10 Score=98.45 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhHhhcCCC--eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGAT--SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||+.||++|... .|.|.+.. .+...++|.|||+||++++++.+|++|++.+.... ...+..|+|
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~GLG 390 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS------RQTGGSGLG 390 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC------CCCCCCchH
Confidence 3678999999999999753 56666643 45678999999999999999999999987653211 112334889
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 391 L~ivk~i 397 (430)
T PRK11006 391 LAIVKHA 397 (430)
T ss_pred HHHHHHH
Confidence 8766554
No 36
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.15 E-value=1.4e-10 Score=97.33 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhHhhcCCC--eEEEEEE--eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 7 LATAVKELVENSLDAGAT--SVEVKLK--DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~--~i~i~~~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
+.+++.|||.||++|... .|.|.+. ..+.+.|.|.|||+||++++++.+|++|++.+... ...| .|+|
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~-------~~~G-~GLG 344 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDE-------GTEG-YGIG 344 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCCC-------CCCc-cccc
Confidence 678999999999999753 5666653 34567899999999999999999999998776421 1224 4888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 345 L~i~~~i 351 (380)
T PRK09303 345 LSVCRRI 351 (380)
T ss_pred HHHHHHH
Confidence 8765554
No 37
>PRK10364 sensor protein ZraS; Provisional
Probab=99.14 E-value=2.1e-10 Score=98.07 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHhHhhcC--CCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAG--ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~--a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||++||++|. ...|.|.+.. ++...|.|.|||+||+++.++.+|++|+++|.. | .|+|
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~-----------g-~GlG 415 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE-----------G-TGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC-----------C-Cccc
Confidence 36789999999999985 3467777753 556899999999999999999999999876531 3 4889
Q ss_pred hccccccc
Q psy13669 83 LSSLCALS 90 (172)
Q Consensus 83 l~s~~~~~ 90 (172)
|+.+..+.
T Consensus 416 L~iv~~~v 423 (457)
T PRK10364 416 LAVVHNIV 423 (457)
T ss_pred HHHHHHHH
Confidence 88766553
No 38
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-10 Score=99.07 Aligned_cols=74 Identities=28% Similarity=0.371 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHhHhhcCC-----CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCc
Q psy13669 5 LNLATAVKELVENSLDAGA-----TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGF 78 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~a-----~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 78 (172)
.++..++.||++||+||-. ..|.+.+.+ ++...+.|.|+|||||++..+.+|++++++|.. +.
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~-----------~~ 494 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT-----------GG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC-----------CC
Confidence 4577899999999999876 578888865 677899999999999999999999999998852 35
Q ss_pred ccchhcccccc
Q psy13669 79 RGEALSSLCAL 89 (172)
Q Consensus 79 ~G~gl~s~~~~ 89 (172)
+|+||+-+...
T Consensus 495 rGiGL~Lvkq~ 505 (537)
T COG3290 495 RGIGLYLVKQL 505 (537)
T ss_pred CchhHHHHHHH
Confidence 69999876554
No 39
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.13 E-value=2.4e-10 Score=99.48 Aligned_cols=76 Identities=26% Similarity=0.350 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHhHhhcC------CCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCc
Q psy13669 6 NLATAVKELVENSLDAG------ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGF 78 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~------a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 78 (172)
.+.+++.||++||++|. ...|.|.+.. .+...+.|.|||+||+++..+.+|++|+++|... .|.
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~g 502 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CCC
Confidence 36779999999999983 3567777754 4567899999999999999999999999876432 244
Q ss_pred ccchhccccccc
Q psy13669 79 RGEALSSLCALS 90 (172)
Q Consensus 79 ~G~gl~s~~~~~ 90 (172)
+|+||+.+..+.
T Consensus 503 ~GlGL~ivk~iv 514 (545)
T PRK15053 503 HGIGLYLIASYV 514 (545)
T ss_pred ceeCHHHHHHHH
Confidence 689998766553
No 40
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.10 E-value=3.9e-10 Score=95.32 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
+..++.||++||++|+. ..|.|.+.. ++.+.|+|.|||+||+++.+..+|++|++++..... .. +..|+||
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~-----~~-~g~GlGL 427 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN-----SG-EGTGLGL 427 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC-----CC-CCccccH
Confidence 56789999999999874 467887754 456789999999999999999999999987654211 12 2358898
Q ss_pred ccccccc
Q psy13669 84 SSLCALS 90 (172)
Q Consensus 84 ~s~~~~~ 90 (172)
+.+....
T Consensus 428 ~i~~~~~ 434 (457)
T TIGR01386 428 AIVRSIM 434 (457)
T ss_pred HHHHHHH
Confidence 8766543
No 41
>KOG0019|consensus
Probab=99.10 E-value=3.7e-10 Score=97.79 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=89.9
Q ss_pred eccHHHHHHHHHHhHhhcC--------------CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccc-
Q psy13669 4 VLNLATAVKELVENSLDAG--------------ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREF- 67 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~--------------a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~- 67 (172)
.++-+..++|||.||-||- .....|++. +.+...++|.|.|+||+.++|..-......|-...+
T Consensus 55 YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fm 134 (656)
T KOG0019|consen 55 YSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFL 134 (656)
T ss_pred hcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHH
Confidence 4556778999999999983 123455553 345668999999999999998753322222211111
Q ss_pred ---c-ccccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeeeecCCCceEEEEc
Q psy13669 68 ---T-DLTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLH 132 (172)
Q Consensus 68 ---~-~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~ 132 (172)
. ........|.+|+|++|...++ +|.|.|++.+.. .+.|+.+..|..+......-.+||.|++.
T Consensus 135 ealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~~~~rGTki~l~ 203 (656)
T KOG0019|consen 135 EALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEASGLRTGTKIVIH 203 (656)
T ss_pred HHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeeccCccccceEEee
Confidence 1 1123567899999999999998 499999997765 68888887777664443347899999875
No 42
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.10 E-value=4.1e-10 Score=97.59 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhcc
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALSS 85 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 85 (172)
+.+++.||++||++|....|.|.+. .++...|.|.|||+||++++++.+|++|+..+... -| .|+||+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---------~G-~GLGL~I 448 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---------PG-QGLGLSV 448 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---------CC-cchhHHH
Confidence 5789999999999999887877775 35667899999999999999999999987543211 14 3889887
Q ss_pred ccccc
Q psy13669 86 LCALS 90 (172)
Q Consensus 86 ~~~~~ 90 (172)
+..+.
T Consensus 449 vk~iv 453 (485)
T PRK10815 449 AREIT 453 (485)
T ss_pred HHHHH
Confidence 66553
No 43
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.07 E-value=6.7e-10 Score=94.54 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhHhhcCCC--eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGAT--SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
+.+++.|||.||+++... .|.|.+.. .+...|.|.|||+||++++++.+|++|++++.... ...|..|+||
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~------~~~~g~GlGL 426 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN------RASGGSGLGL 426 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC------CCCCCCcHHH
Confidence 678999999999998654 57777653 56688999999999999999999999987653221 1223459998
Q ss_pred ccccccc
Q psy13669 84 SSLCALS 90 (172)
Q Consensus 84 ~s~~~~~ 90 (172)
+.+..+.
T Consensus 427 ~iv~~i~ 433 (466)
T PRK10549 427 AICLNIV 433 (466)
T ss_pred HHHHHHH
Confidence 8665543
No 44
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.06 E-value=7.6e-10 Score=93.51 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhcc
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALSS 85 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 85 (172)
+.+++.||++||++++...|.|.+.. .+...|+|.|||+||++++++.+|++|+...... ...| .|+||+-
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-------~~~g-~GlGL~i 403 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-------GSSG-TGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-------CCCC-eehhHHH
Confidence 56799999999999998888888853 4567899999999999999999999997543211 1223 4888887
Q ss_pred ccccc
Q psy13669 86 LCALS 90 (172)
Q Consensus 86 ~~~~~ 90 (172)
+..+.
T Consensus 404 v~~i~ 408 (435)
T PRK09467 404 VKRIV 408 (435)
T ss_pred HHHHH
Confidence 66554
No 45
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.06 E-value=8.4e-10 Score=93.60 Aligned_cols=77 Identities=26% Similarity=0.278 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhcc
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALSS 85 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s 85 (172)
+.+++.|||+||++++...|.|.+. ..+...++|.|||+||++++++.+|++|++.+.... . ..+..|+||+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-----~-~~~g~GlGL~i 427 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARD-----R-ESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccC-----C-CCCCcchhHHH
Confidence 5678999999999999888888875 356678999999999999999999999986543211 1 11234888876
Q ss_pred cccc
Q psy13669 86 LCAL 89 (172)
Q Consensus 86 ~~~~ 89 (172)
+..+
T Consensus 428 v~~~ 431 (461)
T PRK09470 428 VENA 431 (461)
T ss_pred HHHH
Confidence 5543
No 46
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.05 E-value=7.9e-10 Score=91.35 Aligned_cols=74 Identities=26% Similarity=0.420 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHhhcCC--CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGA--TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
+.+++.|||+||+++.. ..|.|.+. +++...+.|.|||+||++++++.+|++|+..+.. .+..|+||
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GlGL 317 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR----------YGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC----------CCCcCHHH
Confidence 56899999999999864 46777775 3566789999999999999999999998753211 12348888
Q ss_pred ccccccc
Q psy13669 84 SSLCALS 90 (172)
Q Consensus 84 ~s~~~~~ 90 (172)
+.+..+.
T Consensus 318 ~i~~~i~ 324 (356)
T PRK10755 318 SIVSRIT 324 (356)
T ss_pred HHHHHHH
Confidence 7665543
No 47
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.04 E-value=6.6e-10 Score=99.35 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhHhhcCCCe--EEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGATS--VEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~--i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
++|++.|||+||.++.+.. |.|... +.+.+.+.|.|+|+|||+++++.+|++|++....+ ..-|. |+||
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~-------~~~G~-GLGL 847 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKES-------ATRGV-GLGL 847 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC-------CCCCc-cccH
Confidence 5799999999999998765 444443 45788999999999999999999999998765322 12344 6776
Q ss_pred cccc
Q psy13669 84 SSLC 87 (172)
Q Consensus 84 ~s~~ 87 (172)
+-+.
T Consensus 848 sIc~ 851 (890)
T COG2205 848 AICR 851 (890)
T ss_pred HHHH
Confidence 6433
No 48
>KOG0020|consensus
Probab=99.03 E-value=2.2e-09 Score=91.43 Aligned_cols=149 Identities=22% Similarity=0.276 Sum_probs=92.0
Q ss_pred eccHHHHHHHHHHhHhhcC----------------CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccC---ccC-
Q psy13669 4 VLNLATAVKELVENSLDAG----------------ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKH---HTS- 62 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~----------------a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~---~~s- 62 (172)
+.+-...++|||.||-||- ....+|.+. +.....+.|.|.|.||+.++|-.-.... .+|
T Consensus 93 Y~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~ 172 (785)
T KOG0020|consen 93 YRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSE 172 (785)
T ss_pred hhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHH
Confidence 3455678999999999983 123555554 3345579999999999999886532222 122
Q ss_pred ---Ccccccccc--cccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEE-Eeee--ecCCCceEEEEcc
Q psy13669 63 ---KLREFTDLT--SVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIK-TKTL--VSRQVGTTVSLHN 133 (172)
Q Consensus 63 ---k~~~~~~~~--~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~GT~V~i~~ 133 (172)
|..+..+.. ....+|.+|+|++|.+.++. |.|+|++.+.. .|-|..+.+ ... ...| .+-+.||.|++-
T Consensus 173 Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-QyiWESdan-~FsvseDprg~tL~RGt~ItL~- 249 (785)
T KOG0020|consen 173 FLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYIWESDAN-SFSVSEDPRGNTLGRGTEITLY- 249 (785)
T ss_pred HHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc-ceeeeccCc-ceeeecCCCCCcccCccEEEEE-
Confidence 222222211 23567999999999998885 88888886643 366666533 332 2222 245899999974
Q ss_pred cccCChHhHHHHhHhHHHHHHHHHHHHHHhh
Q psy13669 134 IFSTLPVRQKEFHRHLKKEFAKMTQVLYGYC 164 (172)
Q Consensus 134 lf~~~p~r~~~~~~~~~~~~~~i~~~l~~~a 164 (172)
+-..-..++ +.+.+.+++..|+
T Consensus 250 ----LkeEA~dyL-----E~dtlkeLvkkYS 271 (785)
T KOG0020|consen 250 ----LKEEAGDYL-----EEDTLKELVKKYS 271 (785)
T ss_pred ----ehhhhhhhc-----chhHHHHHHHHHH
Confidence 111111122 3456777777775
No 49
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.03 E-value=1e-09 Score=100.89 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhHhhcCC-CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 7 LATAVKELVENSLDAGA-TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a-~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
+.+++.|||.||+++.. ..|.|.+. ..+...|+|.|||+||++++++.+|++|++.+.. .+..|+||+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL~ 583 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----------SQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----------CCCCchHHH
Confidence 67899999999999864 46777775 3567889999999999999999999999876532 123488887
Q ss_pred cccccc-----ceEEEEee
Q psy13669 85 SLCALS-----SVVIVTRH 98 (172)
Q Consensus 85 s~~~~~-----~v~i~T~~ 98 (172)
.+..+. ++.+.|..
T Consensus 584 i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 544432 45555543
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.02 E-value=1e-09 Score=94.92 Aligned_cols=72 Identities=29% Similarity=0.337 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHhHhhcC----CCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 6 NLATAVKELVENSLDAG----ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~----a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
.+.+++.||++||++|. ...|.|.+.. .+...|.|.|||+||++++++.+|++|+++|.. ..|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------------g~G 500 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------------NRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------------CCc
Confidence 47789999999999984 2367777753 556789999999999999999999999876631 238
Q ss_pred chhcccccc
Q psy13669 81 EALSSLCAL 89 (172)
Q Consensus 81 ~gl~s~~~~ 89 (172)
+||+.+..+
T Consensus 501 lGL~iv~~i 509 (542)
T PRK11086 501 VGLYLVKQS 509 (542)
T ss_pred CcHHHHHHH
Confidence 888776554
No 51
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=98.96 E-value=2.1e-09 Score=96.55 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhh-HHhhhccCccCCcccccccccccccCcccch
Q psy13669 7 LATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDN-YEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~-l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
+.+++.||++||++|.. ..|.|.+.. ++...|.|.|||+||+++. .+++|++|+++|. .| .|+|
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-----------~G-~GLG 647 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-----------AG-MGIG 647 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-----------CC-cchh
Confidence 67899999999999964 367777753 5678899999999999999 8899999987663 13 3888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 648 L~i~~~i 654 (679)
T TIGR02916 648 VYECRQY 654 (679)
T ss_pred HHHHHHH
Confidence 8876654
No 52
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.94 E-value=3.1e-09 Score=96.50 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEe--CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKD--YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~--~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||+.||+++.. ..|.|.+.. .+...+.|.|||+||++++++.+|++|++.|..... ...+..|+|
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~-----~~~~GtGLG 472 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGG-----KPATGTGIG 472 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCC-----CCCCCcchH
Confidence 367899999999999874 356666642 456889999999999999999999999987632210 112345888
Q ss_pred hcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 83 LSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 83 l~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
|+.+..+ +++.+.|... ....+.+.+.
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~lP 504 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEG-KGSCFTLTIH 504 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCC-CeEEEEEEEe
Confidence 8754433 3688877753 3334555554
No 53
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=98.93 E-value=4.2e-09 Score=89.32 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||+.||+++.. ..|.|++.. ++...|+|.|||.||++++++.+|++|++.+... ...+..|+|
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlG 440 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLG 440 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchh
Confidence 367899999999999864 467787753 5668899999999999999999999988664311 011234888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 441 L~i~~~~ 447 (475)
T PRK11100 441 LAFVREV 447 (475)
T ss_pred HHHHHHH
Confidence 8876654
No 54
>PRK10337 sensor protein QseC; Provisional
Probab=98.92 E-value=3.2e-09 Score=90.15 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhHhhcCCC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 7 LATAVKELVENSLDAGAT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
+..++.||++||+++... .|.|.+.. ..+.|.|||+||++++++.+|++|+..+... ..| .|+||+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~---~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~--------~~g-~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNA---RNFTVRDNGPGVTPEALARIGERFYRPPGQE--------ATG-SGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEe---eEEEEEECCCCCCHHHHHHhcccccCCCCCC--------CCc-cchHHH
Confidence 567899999999999765 46665532 2699999999999999999999998643211 123 488887
Q ss_pred cccccc
Q psy13669 85 SLCALS 90 (172)
Q Consensus 85 s~~~~~ 90 (172)
.+..+.
T Consensus 421 iv~~i~ 426 (449)
T PRK10337 421 IVRRIA 426 (449)
T ss_pred HHHHHH
Confidence 655543
No 55
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.92 E-value=4.9e-09 Score=96.80 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEe----CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKD----YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~----~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
.+.+++.|||.||+++.. ..|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++.+.... ...| .|
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~------~~~G-tG 637 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDR------YGKA-SG 637 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCC------CCCC-cC
Confidence 467999999999999864 467777642 24578999999999999999999999987653211 1123 38
Q ss_pred chhcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 81 EALSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 81 ~gl~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
+||+-+..+ +++.+.|... ....+.+.+.
T Consensus 638 LGLaI~k~Lve~~GG~I~v~S~~g-~GT~F~I~LP 671 (894)
T PRK10618 638 LTFFLCNQLCRKLGGHLTIKSREG-LGTRYSIHLK 671 (894)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCC-CcEEEEEEEE
Confidence 887654333 3588887753 3344566554
No 56
>PRK10490 sensor protein KdpD; Provisional
Probab=98.91 E-value=4.6e-09 Score=97.14 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhHhhcCCC--eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGAT--SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~--~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.|||+||+++... .|.|.+. +.+...|.|.|||+||++++++.+|++|++.+... ...| .|+|
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-------~~~G-~GLG 849 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-------AIPG-VGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-------CCCC-ccHH
Confidence 3678999999999998644 5777665 35678899999999999999999999998765321 1124 4888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 850 L~Ivk~i 856 (895)
T PRK10490 850 LAICRAI 856 (895)
T ss_pred HHHHHHH
Confidence 8765544
No 57
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.90 E-value=6.2e-09 Score=95.49 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEEEe----------------CCceEEEEEeCCCCCChhhHHhhhccCccCCcccc
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKLKD----------------YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREF 67 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~~~----------------~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~ 67 (172)
.+.+++.||+.||++|.. ..|.|.+.. ++...|.|.|||+||++++++.+|++|++++.
T Consensus 560 ~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---
Confidence 367899999999999853 456666642 34578999999999999999999999987653
Q ss_pred cccccccccCcccchhcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 68 TDLTSVETFGFRGEALSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 68 ~~~~~~~~~G~~G~gl~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
+..|+||+.+..+ +++.+.|.. +....+.+.+.
T Consensus 637 ---------~G~GLGL~i~~~iv~~~gG~i~v~s~~-g~Gt~f~i~LP 674 (828)
T PRK13837 637 ---------GGTGLGLATVHGIVSAHAGYIDVQSTV-GRGTRFDVYLP 674 (828)
T ss_pred ---------CCCcchHHHHHHHHHHCCCEEEEEecC-CCeEEEEEEEe
Confidence 2338888654333 357777764 33344566654
No 58
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.87 E-value=7.8e-09 Score=95.61 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEe-CCc-eEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKD-YGS-ELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~-~~~-~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.|||.||+++.. ..|.|.+.. .+. ..|.|.|+|+||++++++.+|++|++.+.. ...|..|+|
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------~~~~g~GLG 650 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR--------RRSGGTGLG 650 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC--------CCCCCccHH
Confidence 367899999999999864 457777642 344 889999999999999999999999877621 122345888
Q ss_pred hcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 83 LSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 83 l~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
|+.+..+ +++.+.|.... ...+.+.+.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~-Gt~f~~~lp 682 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGV-GSCFWFTLP 682 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC-cEEEEEEEE
Confidence 8754433 24667666432 233444443
No 59
>PRK09835 sensor kinase CusS; Provisional
Probab=98.87 E-value=1.2e-08 Score=87.21 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||++||+++.. ..|.|.+.. .+...|.|.|||.||++++++.+|++|++...... ....| .|+|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~-----~~~~g-~GlG 448 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQ-----RKGEG-SGIG 448 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCC-----CCCCC-cchH
Confidence 368899999999999864 357777653 45678999999999999999999999987643221 11123 4888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+-+..+
T Consensus 449 L~i~~~i 455 (482)
T PRK09835 449 LAIVKSI 455 (482)
T ss_pred HHHHHHH
Confidence 8765444
No 60
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.87 E-value=8e-09 Score=82.12 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEeC-CceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKDY-GSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~~-~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
.+.+++.||+.||++|.. ..|.|.+... +...+.|.|||+||+++.++.+|++|++++.... |. |+||
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---------g~-GlGL 297 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---------GT-GLGL 297 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---------CC-CccH
Confidence 478899999999999994 8888888643 3588999999999999999999999998886421 33 7787
Q ss_pred ccccc
Q psy13669 84 SSLCA 88 (172)
Q Consensus 84 ~s~~~ 88 (172)
+.+..
T Consensus 298 ~i~~~ 302 (336)
T COG0642 298 AIVKR 302 (336)
T ss_pred HHHHH
Confidence 65544
No 61
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.87 E-value=8.8e-09 Score=94.85 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
.+.+++.||+.||+++.. ..|.|.+.. .....|.|.|||+||++++++.+|++|+..+.. .|..|+||
T Consensus 561 ~l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 630 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK----------RGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC----------CCCCcccH
Confidence 367899999999999864 467777753 456789999999999999999999999764321 13348888
Q ss_pred cccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 84 SSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 84 ~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
+.+..+ +++++.+.... ...+.+.+.
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~-Gt~f~i~lP 661 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEV-GSCFCLRLP 661 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCC-CeEEEEEEE
Confidence 754333 35778776532 333555554
No 62
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.84 E-value=1.3e-08 Score=81.98 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHhhcCC--CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGA--TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
+.+++.+|+.||+++.. ..|.|.+. ..+...+.|.|||.||+++.++.+|.+|+..+.... . ..+..|+||
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~-----~-~~~g~glGL 303 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRS-----R-DTGGTGLGL 303 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcccc-----c-CCCCCcccH
Confidence 67899999999999864 35666664 345678999999999999999999999986543211 0 112348888
Q ss_pred cccccc
Q psy13669 84 SSLCAL 89 (172)
Q Consensus 84 ~s~~~~ 89 (172)
+.+..+
T Consensus 304 ~~~~~~ 309 (333)
T TIGR02966 304 AIVKHV 309 (333)
T ss_pred HHHHHH
Confidence 765544
No 63
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.84 E-value=1.1e-08 Score=83.98 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhHhhcC-C--CeEEEEEEeC-----------CceEEEEEeCCCCCChhhHHhhhccCccCCccccccccc
Q psy13669 7 LATAVKELVENSLDAG-A--TSVEVKLKDY-----------GSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTS 72 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~-a--~~i~i~~~~~-----------~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~ 72 (172)
+.+++.||++||++|. . ..|.|..... ....+.|.|||+||+++.++.+|.+|++++..
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~------- 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG------- 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC-------
Confidence 7889999999999975 3 3555554211 02479999999999999999999999876631
Q ss_pred ccccCcccchhcccccc
Q psy13669 73 VETFGFRGEALSSLCAL 89 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~ 89 (172)
| .|+||+.+..+
T Consensus 311 ----g-~GlGL~i~~~i 322 (348)
T PRK11073 311 ----G-TGLGLSIARNL 322 (348)
T ss_pred ----C-ccCCHHHHHHH
Confidence 2 38888765544
No 64
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.83 E-value=1.2e-08 Score=88.51 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHhHhhcCCC--eEEEEEEe-CCc-eEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccc
Q psy13669 6 NLATAVKELVENSLDAGAT--SVEVKLKD-YGS-ELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGE 81 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~-~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 81 (172)
.+.+++.||+.||+++... .|.|.+.. .+. ..|.|.|||+||+++.+..+|++|++++.. ..|+
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~------------g~gl 567 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK------------GTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC------------CCch
Confidence 3778999999999998543 56666642 344 899999999999999999999999876521 2488
Q ss_pred hhcccccc
Q psy13669 82 ALSSLCAL 89 (172)
Q Consensus 82 gl~s~~~~ 89 (172)
||+.+...
T Consensus 568 GL~~~~~~ 575 (607)
T PRK11360 568 GLALSQRI 575 (607)
T ss_pred hHHHHHHH
Confidence 88765543
No 65
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.82 E-value=1.5e-08 Score=94.00 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHhhcCC-CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 7 LATAVKELVENSLDAGA-TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a-~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
+.+++.|||.||+++.. ..|.|.+. ..+...|.|.|+|+||++++++.+|++|++.+.... . ..+..|+||+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~-----~-~~~GtGLGL~ 636 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ-----R-NFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCC-----C-CCCCeehhHH
Confidence 67899999999999864 35666664 356688999999999999999999999987543211 1 1223488887
Q ss_pred ccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 85 SLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 85 s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
.+..+ +++.+.|... ....+.+.+.
T Consensus 637 I~k~lv~~~gG~I~v~S~~g-~Gt~F~i~LP 666 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEPG-MGSQFTIRIP 666 (924)
T ss_pred HHHHHHHHCCCEEEEEEcCC-CcEEEEEEEE
Confidence 54433 3577777642 2334555554
No 66
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=98.81 E-value=1.9e-08 Score=90.87 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.|||+||+++.. ..|.|.+.. .+...|+|.|||+||++++++.+|++|++.+..... ..+..|+|
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~------~~~g~GLG 670 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQ------DQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCC------CCCCccHH
Confidence 367899999999999864 357776653 566789999999999999999999999877643210 11134888
Q ss_pred hccccccc
Q psy13669 83 LSSLCALS 90 (172)
Q Consensus 83 l~s~~~~~ 90 (172)
|+.+..+.
T Consensus 671 L~Ivr~Iv 678 (703)
T TIGR03785 671 LYIVRLIA 678 (703)
T ss_pred HHHHHHHH
Confidence 88765543
No 67
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.76 E-value=3e-08 Score=91.13 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhHhhcCC-CeEEEEEE--eC--C--ceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcc
Q psy13669 7 LATAVKELVENSLDAGA-TSVEVKLK--DY--G--SELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFR 79 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a-~~i~i~~~--~~--~--~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 79 (172)
+.+++.|||.||+++.. ..|.|.+. .. + ...|.|.|+|+||++++++.+|++|+...... . ...|..
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-----~-~~~~g~ 482 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASI-----S-RRHGGT 482 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCC-----C-CCCCCc
Confidence 67899999999999864 34555542 21 1 46799999999999999999999997653221 0 123445
Q ss_pred cchhcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 80 GEALSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 80 G~gl~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
|+||+-+..+ +++.+.|.... ...+.+.+.
T Consensus 483 GLGL~i~~~i~~~~gG~i~v~s~~~~-Gt~f~i~lp 517 (919)
T PRK11107 483 GLGLVITQKLVNEMGGDISFHSQPNR-GSTFWFHLP 517 (919)
T ss_pred chhHHHHHHHHHHhCCEEEEEecCCC-CEEEEEEEE
Confidence 8888754433 35777776532 233444443
No 68
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=98.75 E-value=3.3e-08 Score=80.17 Aligned_cols=72 Identities=24% Similarity=0.178 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhHhhcCC------CeEEEEE--------Ee---CCceEEEEEeCCCCCChhhHHhhhccCccCCccccc
Q psy13669 6 NLATAVKELVENSLDAGA------TSVEVKL--------KD---YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFT 68 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a------~~i~i~~--------~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~ 68 (172)
.+.|++.|||.||.+|.+ ..|.++- .. .-...+.|.|||+|+|++-.+.+|.++.++|.+
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~--- 317 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG--- 317 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC---
Confidence 367899999999999876 3444432 11 113468899999999999999999999999864
Q ss_pred ccccccccCcccchhcccccc
Q psy13669 69 DLTSVETFGFRGEALSSLCAL 89 (172)
Q Consensus 69 ~~~~~~~~G~~G~gl~s~~~~ 89 (172)
-.|+||+-...+
T Consensus 318 ---------GsGLGLala~~l 329 (363)
T COG3852 318 ---------GTGLGLALAQNL 329 (363)
T ss_pred ---------CccccHHHHHHH
Confidence 238887765544
No 69
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.73 E-value=3.6e-08 Score=93.29 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHhHhhcCCC-eEEEEEE----eC--CceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCc
Q psy13669 6 NLATAVKELVENSLDAGAT-SVEVKLK----DY--GSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGF 78 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-~i~i~~~----~~--~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 78 (172)
.+.+++.||+.||+++... .+.|.+. .. ....|.|.|||+||++++++.+|++|++++... ..+.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--------~~~G 899 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR--------QQTG 899 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC--------CCCC
Confidence 4678999999999998643 3444432 11 236789999999999999999999998765421 1123
Q ss_pred ccchhcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 79 RGEALSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 79 ~G~gl~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
.|+||+.+..+ +++.+.+... ....+.+.+.
T Consensus 900 ~GLGL~i~~~iv~~~gG~i~v~s~~~-~Gt~f~i~lP 935 (1197)
T PRK09959 900 SGLGLMICKELIKNMQGDLSLESHPG-IGTTFTITIP 935 (1197)
T ss_pred cCchHHHHHHHHHHcCCEEEEEeCCC-CcEEEEEEEE
Confidence 48888754333 3577777653 2334555554
No 70
>PRK13557 histidine kinase; Provisional
Probab=98.73 E-value=4.1e-08 Score=84.55 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhHhhcCCC--eEEEEEE----------------eCCceEEEEEeCCCCCChhhHHhhhccCccCCccccc
Q psy13669 7 LATAVKELVENSLDAGAT--SVEVKLK----------------DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFT 68 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~--~i~i~~~----------------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~ 68 (172)
+.+++.||+.||++|... .|.|... .++...|.|.|||.||+++.+..+|.+|++++..
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~--- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE--- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---
Confidence 678999999999998643 4544432 1235689999999999999999999999876532
Q ss_pred ccccccccCcccchhccccc----c-cceEEEEeecCCCceEEEEEe
Q psy13669 69 DLTSVETFGFRGEALSSLCA----L-SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 69 ~~~~~~~~G~~G~gl~s~~~----~-~~v~i~T~~~~~~~~~~~~~~ 110 (172)
.+..|+||+.+.. . +++.+.+... ....+++.+.
T Consensus 355 -------~~g~GlGL~i~~~~v~~~gG~i~~~s~~~-~G~~f~i~lP 393 (540)
T PRK13557 355 -------GKGTGLGLSMVYGFAKQSGGAVRIYSEVG-EGTTVRLYFP 393 (540)
T ss_pred -------CCCCCccHHHHHHHHHHCCCEEEEEecCC-CceEEEEEee
Confidence 1234888764332 2 3587877653 3334566654
No 71
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.67 E-value=9.6e-08 Score=78.77 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHhHhhcCCC--eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGAT--SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.|++-|+|.||+++++. .|++.+.. .....|+|.|.|.|||.++++.+|.+|+.-... .....|-.|+|
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA------RsR~~gGTGLG 415 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA------RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh------hhhcCCCCchh
Confidence 4689999999999999865 56666643 556889999999999999999999999764322 12346777999
Q ss_pred hccccc
Q psy13669 83 LSSLCA 88 (172)
Q Consensus 83 l~s~~~ 88 (172)
|+-...
T Consensus 416 LaIake 421 (459)
T COG5002 416 LAIAKE 421 (459)
T ss_pred HHHHHH
Confidence 875443
No 72
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=98.65 E-value=1.9e-07 Score=67.38 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=52.2
Q ss_pred eccHHHHHHHHHHhHhhcC-----CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccC
Q psy13669 4 VLNLATAVKELVENSLDAG-----ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFG 77 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~-----a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 77 (172)
+..+..++.|++.||+.++ ...|.|.+. ..+...+.|.|+|.||+. ...+|.++++++.. .+
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~----------~~ 104 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE----------LE 104 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC----------CC
Confidence 3456789999999999874 346777775 356788999999999983 56778887655421 12
Q ss_pred cccchhcccccc
Q psy13669 78 FRGEALSSLCAL 89 (172)
Q Consensus 78 ~~G~gl~s~~~~ 89 (172)
..|+||+.+..+
T Consensus 105 ~~GlGL~lv~~~ 116 (137)
T TIGR01925 105 RSGMGFTVMENF 116 (137)
T ss_pred CCcccHHHHHHh
Confidence 347887755543
No 73
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=98.64 E-value=2.8e-07 Score=61.09 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhHhhcCC---CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 7 LATAVKELVENSLDAGA---TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a---~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
+.+++.||++||+++.. ..|.|.+.. .+...+.|.|+|.||++..++.++.++... .. ....+..|+|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--~~------~~~~~~~g~g 72 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--SR------SRKGGGTGLG 72 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC--CC------CCCCCccccC
Confidence 35789999999999986 567777653 446789999999999999999888765111 10 0112345778
Q ss_pred hccccccc
Q psy13669 83 LSSLCALS 90 (172)
Q Consensus 83 l~s~~~~~ 90 (172)
++.+..+.
T Consensus 73 l~~~~~~~ 80 (103)
T cd00075 73 LSIVKKLV 80 (103)
T ss_pred HHHHHHHH
Confidence 77655544
No 74
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.62 E-value=6.8e-07 Score=60.12 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHhHhhcCCC--eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAGAT--SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~--~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+..++.|+++||+++... .|.|.+.. .+...+.|.|+|.||+++.+..++.++...+... ...+..|+|
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~g 77 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRS-------RKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCC-------CCCCccccc
Confidence 4678999999999998875 77777753 4567899999999999999999998876544211 112345888
Q ss_pred hccccccc
Q psy13669 83 LSSLCALS 90 (172)
Q Consensus 83 l~s~~~~~ 90 (172)
|+.+..++
T Consensus 78 l~~~~~~~ 85 (111)
T smart00387 78 LSIVKKLV 85 (111)
T ss_pred HHHHHHHH
Confidence 87766554
No 75
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.59 E-value=1.5e-07 Score=84.88 Aligned_cols=89 Identities=19% Similarity=0.349 Sum_probs=60.4
Q ss_pred eeccHHHHHHHHHHhHhhcCC--------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHH--------------
Q psy13669 3 VVLNLATAVKELVENSLDAGA--------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYE-------------- 53 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a--------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~-------------- 53 (172)
+|..+..-|.+||.||+|||- ..|.++.. .++...|.|.|||.||+++.+.
T Consensus 429 IlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a 508 (716)
T COG0643 429 ILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEA 508 (716)
T ss_pred HHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHh
Confidence 455666778899999999972 35777765 4778999999999999998764
Q ss_pred ----------hhhccCccCCcccccccccccccCcccchhcc----ccccc-ceEEEEee
Q psy13669 54 ----------GLTLKHHTSKLREFTDLTSVETFGFRGEALSS----LCALS-SVVIVTRH 98 (172)
Q Consensus 54 ----------~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s----~~~~~-~v~i~T~~ 98 (172)
.+|.++|+++..- .+ .-|+ |+|+-. +..++ .|.|.|..
T Consensus 509 ~~lSd~Ei~~LIF~PGFSTa~~V-td-----vSGR-GVGMDVVk~~I~~LgG~I~V~S~~ 561 (716)
T COG0643 509 ETLSDEEILNLIFAPGFSTAEQV-TD-----VSGR-GVGMDVVKTNIEQLGGSISVSSEP 561 (716)
T ss_pred ccCCHHHHHHHHhcCCCCcchhh-hc-----ccCC-ccCHHHHHHHHHHcCCEEEEEecC
Confidence 3677777665321 11 2244 999843 44443 45555553
No 76
>PRK10547 chemotaxis protein CheA; Provisional
Probab=98.57 E-value=2e-07 Score=83.61 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhHhhcCC--------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHH------------------
Q psy13669 7 LATAVKELVENSLDAGA--------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYE------------------ 53 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~------------------ 53 (172)
+...|.+||.||+||+- ..|.+... .++.+.|.|.|||.||+++.+.
T Consensus 386 l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 386 IIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 34457899999999962 25777765 3567889999999999997654
Q ss_pred ---hhhccCccCCcccccccccccccCcccchhcccc----cc-cceEEEEeecCCCceEEEEEe
Q psy13669 54 ---GLTLKHHTSKLREFTDLTSVETFGFRGEALSSLC----AL-SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 54 ---~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~----~~-~~v~i~T~~~~~~~~~~~~~~ 110 (172)
.+|.++++++.... ..-| +|+||..+. .+ +++.+.|.. +....+.+.+.
T Consensus 466 ~~~lIF~pgfst~~~~~------~~sG-rGvGL~iVk~~ve~lgG~I~v~S~~-g~Gt~f~i~LP 522 (670)
T PRK10547 466 VGMLIFAPGFSTAEQVT------DVSG-RGVGMDVVKRNIQEMGGHVEIQSKQ-GKGTTIRILLP 522 (670)
T ss_pred HHHHhhcCCcccccccc------cCCC-CchhHHHHHHHHHHcCCEEEEEecC-CCcEEEEEEEe
Confidence 47888776653210 1123 488886533 22 357788764 33334555543
No 77
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=98.51 E-value=1.7e-07 Score=81.89 Aligned_cols=71 Identities=27% Similarity=0.359 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhHhhcCCC---------eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCccccccccccccc
Q psy13669 7 LATAVKELVENSLDAGAT---------SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETF 76 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~---------~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 76 (172)
+.|++.||++||.+|... .|.++..+ ++.+++.|.|||.|+|.+.+.+++++|.|++.+
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K----------- 669 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK----------- 669 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc-----------
Confidence 578999999999997422 36666643 678999999999999999999999999998853
Q ss_pred Ccccchhcccccc
Q psy13669 77 GFRGEALSSLCAL 89 (172)
Q Consensus 77 G~~G~gl~s~~~~ 89 (172)
|- |+||+-+..+
T Consensus 670 GT-GLGLAiVKkI 681 (712)
T COG5000 670 GT-GLGLAIVKKI 681 (712)
T ss_pred cc-cccHHHHHHH
Confidence 23 8888876654
No 78
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.45 E-value=6.9e-07 Score=66.68 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=58.3
Q ss_pred eccHHHHHHHHHHhHhhcCC-----CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccC
Q psy13669 4 VLNLATAVKELVENSLDAGA-----TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFG 77 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~a-----~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 77 (172)
+..+..++.|++.||++++- ..|.|.+. ..+.+.+.|.|+|+||+++.+...+.++...+... ...
T Consensus 40 ~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--------~~~ 111 (161)
T PRK04069 40 IEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--------DLR 111 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCccc--------ccC
Confidence 34577899999999999863 35777664 36688999999999999988877776654433211 011
Q ss_pred cccchhcccccccc-eEEE
Q psy13669 78 FRGEALSSLCALSS-VVIV 95 (172)
Q Consensus 78 ~~G~gl~s~~~~~~-v~i~ 95 (172)
..|+||+.+..+.. +.+.
T Consensus 112 ~~G~GL~li~~l~d~v~~~ 130 (161)
T PRK04069 112 EGGLGLFLIETLMDDVTVY 130 (161)
T ss_pred CCceeHHHHHHHHHhEEEE
Confidence 23778877776653 5544
No 79
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=98.44 E-value=5.4e-07 Score=76.75 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHhHhhcC---CCeEEEEEE--eCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 6 NLATAVKELVENSLDAG---ATSVEVKLK--DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~---a~~i~i~~~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++++.||+-||+||+ +..|.+... +.+..++.|.|||.|.|.+-+++++.||.+||.
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 67899999999999987 456777774 245789999999999999999999999999984
No 80
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.39 E-value=1.4e-06 Score=64.95 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=58.9
Q ss_pred eeccHHHHHHHHHHhHhhcCC-----CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCccccccccccccc
Q psy13669 3 VVLNLATAVKELVENSLDAGA-----TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETF 76 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a-----~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 76 (172)
.+.++..++.|++.||+.++- ..|.|.+. ..+.+.+.|.|+|.||+++.+...+.++....... ..
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--------~~ 110 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--------DL 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCcc--------cC
Confidence 345678899999999999862 36777664 35678999999999999988776665543322111 11
Q ss_pred Ccccchhcccccccc-eEEE
Q psy13669 77 GFRGEALSSLCALSS-VVIV 95 (172)
Q Consensus 77 G~~G~gl~s~~~~~~-v~i~ 95 (172)
...|+||+.+..++. +.+.
T Consensus 111 ~~~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 111 REGGLGLFLIETLMDEVEVY 130 (159)
T ss_pred CCCccCHHHHHHhccEEEEE
Confidence 234888888887764 4444
No 81
>PRK03660 anti-sigma F factor; Provisional
Probab=98.35 E-value=6.2e-06 Score=59.96 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=50.7
Q ss_pred eccHHHHHHHHHHhHhhcCC-----CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccC
Q psy13669 4 VLNLATAVKELVENSLDAGA-----TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFG 77 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~a-----~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G 77 (172)
+..+..++.|++.||+.++. ..|.|.+. ..+...+.|.|+|.||++ ....+.+++.++... +
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~----------~ 104 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL----------E 104 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC----------C
Confidence 34678899999999998642 35777664 345678999999999986 456677765443211 2
Q ss_pred cccchhcccccc
Q psy13669 78 FRGEALSSLCAL 89 (172)
Q Consensus 78 ~~G~gl~s~~~~ 89 (172)
..|+||+.+..+
T Consensus 105 ~~GlGL~i~~~~ 116 (146)
T PRK03660 105 RSGMGFTVMESF 116 (146)
T ss_pred CccccHHHHHHh
Confidence 347887765544
No 82
>PRK13560 hypothetical protein; Provisional
Probab=98.27 E-value=2e-06 Score=77.64 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHhhcC-----CCeEEEEEEe--CCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDAG-----ATSVEVKLKD--YGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~-----a~~i~i~~~~--~~~~~i~V~DnG~Gi~~~ 50 (172)
+.+++.||+.||+++. ...|.|.+.. ++.+.|+|.|||+|||++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 4568999999999974 2357777653 356889999999999986
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=98.24 E-value=3.2e-06 Score=73.64 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHhhcC-CCeEEEEEEe-CCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDAG-ATSVEVKLKD-YGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~-a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~ 50 (172)
+.+++.|++.||+++. ++.|.|++.. ++...++|.|||+||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 5678999999999975 4678887753 556889999999999865
No 84
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.18 E-value=8.9e-06 Score=57.55 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHhHhhcCCC-----eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCc
Q psy13669 5 LNLATAVKELVENSLDAGAT-----SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGF 78 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~a~-----~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 78 (172)
..+..++.|++.||+.|+.. .|.|.+. ..+.+.+.|.|+|.|+++......-..-. .....
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------------~~~~~ 96 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP-------------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC-------------CCCCC
Confidence 45778999999999998743 5777764 35678999999999999886553221100 12234
Q ss_pred ccchhcccccccc-eEE
Q psy13669 79 RGEALSSLCALSS-VVI 94 (172)
Q Consensus 79 ~G~gl~s~~~~~~-v~i 94 (172)
.|.||+-+..++. +.+
T Consensus 97 ~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 97 GGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCcCHHHHHHHHcEEEE
Confidence 5888888887763 655
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=98.17 E-value=6.2e-06 Score=72.66 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHhhcC-CCeEEEEEEe-CCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDAG-ATSVEVKLKD-YGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~-a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~ 50 (172)
+.+++.|++.||++|. +..|.|.+.. ++.+.+.|.|||+||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 6689999999999975 5678888753 467889999999999975
No 86
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.06 E-value=1.8e-05 Score=68.28 Aligned_cols=52 Identities=29% Similarity=0.555 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHhHhhcCC------CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhh
Q psy13669 5 LNLATAVKELVENSLDAGA------TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLT 56 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~a------~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~ 56 (172)
..|.-++..||+||+.|+- ..|.|.... ++.+.+.|.|||+||+++....+.
T Consensus 349 ~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 349 IDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred cCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 4678899999999999972 246666643 567899999999999998877443
No 87
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=98.06 E-value=1.1e-05 Score=71.17 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhHhhcCC---CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 7 LATAVKELVENSLDAGA---TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a---~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
+.++..|||.||++++. ..|.|... ..+..++.|+|||.||++..++++|..|-.-.. ...++..|+|
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--------~~~y~gtG~G 708 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--------RDEYLGTGLG 708 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc--------hhhhcCCCcc
Confidence 56889999999999874 45777764 356789999999999999999999887743221 1223347999
Q ss_pred hccccccc-----ceEEEEee
Q psy13669 83 LSSLCALS-----SVVIVTRH 98 (172)
Q Consensus 83 l~s~~~~~-----~v~i~T~~ 98 (172)
|+-+..+. ++.++|+.
T Consensus 709 L~I~kkI~e~H~G~i~vEs~~ 729 (750)
T COG4251 709 LAICKKIAERHQGRIWVESTP 729 (750)
T ss_pred HHHHHHHHHHhCceEEEeecC
Confidence 87654443 35566654
No 88
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.06 E-value=1.6e-05 Score=66.49 Aligned_cols=47 Identities=34% Similarity=0.377 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHhHhhc-CCCeEEEEEEe-CCceEEEEEeCCCCCChhh
Q psy13669 5 LNLATAVKELVENSLDA-GATSVEVKLKD-YGSELVEVTDNGGGVHEDN 51 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da-~a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~ 51 (172)
..+..+++|.|.|+++| +|+.+.|.+.. ++...++|.|||.|++++.
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccc
Confidence 45678999999999996 58899999864 5669999999999999764
No 89
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=97.79 E-value=9.8e-05 Score=61.56 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHhHhh-cCCCeEEEEEEeCC-ceEEEEEeCCCCCChh
Q psy13669 6 NLATAVKELVENSLD-AGATSVEVKLKDYG-SELVEVTDNGGGVHED 50 (172)
Q Consensus 6 ~~~~~l~eLi~Na~d-a~a~~i~i~~~~~~-~~~i~V~DnG~Gi~~~ 50 (172)
++...+.|++.|=.+ |.|+.|+|.+..++ ...++|+|||.|+|+.
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 567889999999887 57999999987544 4889999999999975
No 90
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=97.78 E-value=7.5e-05 Score=65.25 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHhhcCC-CeEEEEEEe--CCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDAGA-TSVEVKLKD--YGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a-~~i~i~~~~--~~~~~i~V~DnG~Gi~~~ 50 (172)
+.+++.||+.||+++.. ..|.|.+.. .+.+.+.|.|||+||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 56899999999999754 467777643 456889999999999963
No 91
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.72 E-value=0.00025 Score=52.28 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=55.0
Q ss_pred eeccHHHHHHHHHHhHhhcCC------CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccc
Q psy13669 3 VVLNLATAVKELVENSLDAGA------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVET 75 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 75 (172)
.+..+..|+.|++.|++.|+- ..|.|.+. ..+...+.|.|.|+|+..- ...+.+.+......
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~--~~~~~~~~~~~~~~--------- 105 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDL--EESLGPGDTTAEGL--------- 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCH--HHhcCCCCCCCccc---------
Confidence 456788999999999999752 46777665 3567899999999777654 33444442222111
Q ss_pred cCcccchhccccccc-ceEEEEeecC
Q psy13669 76 FGFRGEALSSLCALS-SVVIVTRHKL 100 (172)
Q Consensus 76 ~G~~G~gl~s~~~~~-~v~i~T~~~~ 100 (172)
=..|+|++.+..+. +|.+.....+
T Consensus 106 -~~~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 106 -QEGGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred -ccccccHHHHhhhheeEEEEeccCC
Confidence 02377777666554 4666644433
No 92
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=97.54 E-value=0.0002 Score=62.27 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHhhc-CCCeEEEEEEe-CCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDA-GATSVEVKLKD-YGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da-~a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~ 50 (172)
+-++++|-+.||+++ .|+.|.|.+.. .+.+.+.|+|||+|||..
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 568899999999995 58999999874 478999999999999976
No 93
>KOG0787|consensus
Probab=97.49 E-value=0.00047 Score=57.56 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHhHhhcC----------CCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccc-c
Q psy13669 5 LNLATAVKELVENSLDAG----------ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLT-S 72 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~----------a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~-~ 72 (172)
+.+..++-||++||+.|. -.-|.|.+.. +....|.|+|-|-|++.++++.+|.-.+++......+.. .
T Consensus 259 shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~ 338 (414)
T KOG0787|consen 259 SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRT 338 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCc
Confidence 346789999999999983 1237777643 455678999999999999999999887776654433332 2
Q ss_pred ccccCcccchh
Q psy13669 73 VETFGFRGEAL 83 (172)
Q Consensus 73 ~~~~G~~G~gl 83 (172)
-...|+ |-||
T Consensus 339 ~plaGf-G~GL 348 (414)
T KOG0787|consen 339 APLAGF-GFGL 348 (414)
T ss_pred Cccccc-ccCC
Confidence 333444 4444
No 94
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.28 E-value=0.00063 Score=53.44 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=36.2
Q ss_pred eccHHHHHHHHHHhHhhcCCC-----eEEEEEEe--CC-ceEEEEEeCCCCCChh
Q psy13669 4 VLNLATAVKELVENSLDAGAT-----SVEVKLKD--YG-SELVEVTDNGGGVHED 50 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~a~-----~i~i~~~~--~~-~~~i~V~DnG~Gi~~~ 50 (172)
...+.-++.||+.||++|++. .|.|.+.. ++ ...+.|+|||.|++.+
T Consensus 120 A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 120 AVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 345677899999999998754 56676653 22 3789999999999965
No 95
>KOG0355|consensus
Probab=97.00 E-value=0.0012 Score=60.00 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=71.3
Q ss_pred eccHHHHHHHHHHhHhh----cCCCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hhhcc-CccCCccccccc
Q psy13669 4 VLNLATAVKELVENSLD----AGATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GLTLK-HHTSKLREFTDL 70 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~d----a~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~~~-~~~sk~~~~~~~ 70 (172)
.+-+.++..|++.||.| +....|.+.++. ..-.|+|.|||.|||-+... .+|.. +.+|+++..+..
T Consensus 51 ~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~-e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~d~ekK 129 (842)
T KOG0355|consen 51 VPGLYKIFDEILVNAADKQRDPKMNTIKVTIDK-EKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKK 129 (842)
T ss_pred CCcHHHHHHHHhhcccccccCCCcceeEEEEcc-CCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccccCCCccc
Confidence 45678999999999998 223467777753 34479999999999987654 23433 455565532211
Q ss_pred ccccccCcccch--hcccccccceEEEEeecCCCceEEEEEecCCeEEEee----eecCCCceEEEEc
Q psy13669 71 TSVETFGFRGEA--LSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKT----LVSRQVGTTVSLH 132 (172)
Q Consensus 71 ~~~~~~G~~G~g--l~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~GT~V~i~ 132 (172)
.+-|.+|-| |..++.. +++++|........++.++. ++.....+ +...+.+|.|++.
T Consensus 130 ---~tggrngygakLcniFs~-~f~~Et~d~~~~~~~kQ~w~-~nm~~~~~~~i~~~~~~~yTkitF~ 192 (842)
T KOG0355|consen 130 ---VTGGRNGYGAKLCNIFST-EFTVETADREYKMAFKQTWI-NNMTRDEEPKIVPSTDEDYTKITFS 192 (842)
T ss_pred ---cccCCCccceeeeeeccc-cceeeeeehHhHHHHHHhhh-cCCcccCCceeecCCCCCcceEEeC
Confidence 223444444 5555443 35566554443333444443 22222111 2234559999986
No 96
>PRK13559 hypothetical protein; Provisional
Probab=96.95 E-value=0.0017 Score=53.55 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHhHhhcCC-----CeEEEEE--E-eCCceEEEEEeCCCCCChh
Q psy13669 6 NLATAVKELVENSLDAGA-----TSVEVKL--K-DYGSELVEVTDNGGGVHED 50 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-----~~i~i~~--~-~~~~~~i~V~DnG~Gi~~~ 50 (172)
.+.+++.||+.||++|++ ..|.|.+ . .++...+.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 367899999999999942 4688877 2 2556889999999997754
No 97
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.93 E-value=0.0051 Score=51.02 Aligned_cols=48 Identities=31% Similarity=0.289 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHhHh-hcCCCeEEEEEEe-CCceEEEEEeCCCCCChhhHH
Q psy13669 6 NLATAVKELVENSL-DAGATSVEVKLKD-YGSELVEVTDNGGGVHEDNYE 53 (172)
Q Consensus 6 ~~~~~l~eLi~Na~-da~a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~ 53 (172)
.+..+++|-+.|-= .|+|+.|.|.+.. .+.+.++|.|||.|++.....
T Consensus 359 alyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 359 ALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 34455555555543 3689999999974 678999999999999976543
No 98
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=96.60 E-value=0.0037 Score=53.96 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHhhcCC------CeEEEEEE-eCCceEEEEEeCCCCCChh
Q psy13669 7 LATAVKELVENSLDAGA------TSVEVKLK-DYGSELVEVTDNGGGVHED 50 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~ 50 (172)
|.-.++.||+||++++- ..|.|.+. ++....+.|+|||.|++++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 45578999999999873 35777765 3567899999999999997
No 99
>PF14501 HATPase_c_5: GHKL domain
Probab=96.03 E-value=0.063 Score=36.43 Aligned_cols=41 Identities=12% Similarity=0.342 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHhHhhcC-----CCeEEEEEEe-CCceEEEEEeCCCC
Q psy13669 6 NLATAVKELVENSLDAG-----ATSVEVKLKD-YGSELVEVTDNGGG 46 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~-----a~~i~i~~~~-~~~~~i~V~DnG~G 46 (172)
++..++.+|++||++|. ...|.|.+.. .+...|.|...-..
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC
Confidence 56789999999999974 3367777753 56778888887444
No 100
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.25 E-value=10 Score=28.11 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=36.5
Q ss_pred eeccHHHHHHHHHHhHhhcCCC-eEEEEEE-eCCceEEEEEeCCCCCChhhHHhh
Q psy13669 3 VVLNLATAVKELVENSLDAGAT-SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGL 55 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a~-~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~ 55 (172)
+=.++.-...|||+||++..++ .|.|+.. ....+.+.|.+.=++=+..+.+++
T Consensus 60 vrhsvgYl~NELiENAVKfra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~l 114 (184)
T COG5381 60 VRHSVGYLANELIENAVKFRATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENL 114 (184)
T ss_pred HhhhHHHHHHHHHHhhhcccCCCcEEEEEEeccceEEEEecccCCCccHHHHHHH
Confidence 3456777889999999998765 5666554 345667777777666666665543
No 101
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=72.31 E-value=8.1 Score=33.81 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHhHhhcC-----CCeEEEEEEeCCceEEEEEeCCC---CCChhhHH
Q psy13669 5 LNLATAVKELVENSLDAG-----ATSVEVKLKDYGSELVEVTDNGG---GVHEDNYE 53 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~-----a~~i~i~~~~~~~~~i~V~DnG~---Gi~~~~l~ 53 (172)
.-|..|++|+|-||+=|. ...|.|.+.++ .|.|...|. ||+++++.
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iydD---RieI~NPGgl~~gi~~~~l~ 322 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIYDD---RIEITNPGGLPPGITPEDLL 322 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEECC---eEEEECCCCCCCCCChhHcc
Confidence 347789999999999652 33899999765 699999875 67766654
No 102
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=67.39 E-value=5.6 Score=21.48 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhcCCCC
Q psy13669 152 EFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 152 ~~~~i~~~l~~~a~~~p~i~ 171 (172)
++++.+.+.++|-.+||+++
T Consensus 2 E~dRAR~IyeR~v~~hp~~k 21 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVK 21 (32)
T ss_pred hHHHHHHHHHHHHHhCCCch
Confidence 56788899999999999985
No 103
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=64.69 E-value=6.1 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.8
Q ss_pred CCceEEEEEeCCC
Q psy13669 33 YGSELVEVTDNGG 45 (172)
Q Consensus 33 ~~~~~i~V~DnG~ 45 (172)
++...|+|.|+|+
T Consensus 11 Dgn~qITIeD~GP 23 (30)
T PF07492_consen 11 DGNFQITIEDTGP 23 (30)
T ss_pred CCCcEEEEecCCC
Confidence 4667899999997
No 104
>KOG1845|consensus
Probab=56.15 E-value=13 Score=34.52 Aligned_cols=56 Identities=30% Similarity=0.323 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHhhcC---CCeEEEEEEe---CC-ceEEEE-----EeCCCCCChhhHHhhhccCccCC
Q psy13669 8 ATAVKELVENSLDAG---ATSVEVKLKD---YG-SELVEV-----TDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 8 ~~~l~eLi~Na~da~---a~~i~i~~~~---~~-~~~i~V-----~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
..++.|||+||+|.. ++-+.+..-. +. ...+.| .|||.||.++-+..-....+.+|
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k 215 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSK 215 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhh
Confidence 457899999999964 4433332111 11 222334 48899999998775332333344
No 105
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=42.49 E-value=8.3 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=16.1
Q ss_pred eEEEEEeCCCCCChhhHH-hhhccC
Q psy13669 36 ELVEVTDNGGGVHEDNYE-GLTLKH 59 (172)
Q Consensus 36 ~~i~V~DnG~Gi~~~~l~-~~~~~~ 59 (172)
.+..|.+||.||.|.+-. .+|.+|
T Consensus 45 tsaiItndG~GInP~QTag~vflKh 69 (76)
T PF03671_consen 45 TSAIITNDGVGINPQQTAGNVFLKH 69 (76)
T ss_dssp SEEEEESSS-EE-TTSBHHHHHHHT
T ss_pred eEEEEecCCcccccchhhhhhHhhc
Confidence 467899999999987644 466655
No 106
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=35.75 E-value=24 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=17.0
Q ss_pred EEEEEeCCCCCChhhHH-hhhccC
Q psy13669 37 LVEVTDNGGGVHEDNYE-GLTLKH 59 (172)
Q Consensus 37 ~i~V~DnG~Gi~~~~l~-~~~~~~ 59 (172)
+-.|.+||.||.+.+-. .+|..+
T Consensus 46 sAiiTndGvGINP~qtAGnvflkh 69 (82)
T cd01766 46 SAIITNDGIGINPAQTAGNVFLKH 69 (82)
T ss_pred eeEEecCccccChhhcccceeeec
Confidence 56789999999998755 355443
No 107
>KOG1845|consensus
Probab=34.17 E-value=22 Score=33.16 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.9
Q ss_pred EEEEeCCCCCChhhHHhhhc
Q psy13669 38 VEVTDNGGGVHEDNYEGLTL 57 (172)
Q Consensus 38 i~V~DnG~Gi~~~~l~~~~~ 57 (172)
++..|||.||+++++..+-.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~ 21 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN 21 (775)
T ss_pred cccccCCCCcCchhhhhhhh
Confidence 56789999999999987654
No 108
>PF07205 DUF1413: Domain of unknown function (DUF1413); InterPro: IPR010813 This family consists of several hypothetical bacterial proteins, which seem to be specific to Staphylococcus species. Members of this family are typically around 100 residues in length. The function of this family is unknown.
Probab=30.83 E-value=1.1e+02 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.3
Q ss_pred CCCceEEEEcccccC
Q psy13669 123 RQVGTTVSLHNIFST 137 (172)
Q Consensus 123 ~~~GT~V~i~~lf~~ 137 (172)
-++||..++.+||..
T Consensus 11 l~~gt~F~l~dLf~~ 25 (70)
T PF07205_consen 11 LPPGTVFTLKDLFGK 25 (70)
T ss_pred CCCCCEEeehHhcCh
Confidence 479999999999976
No 109
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=30.63 E-value=82 Score=20.67 Aligned_cols=11 Identities=64% Similarity=0.851 Sum_probs=5.2
Q ss_pred eEEEEEeCCCC
Q psy13669 36 ELVEVTDNGGG 46 (172)
Q Consensus 36 ~~i~V~DnG~G 46 (172)
..+.|.|++.|
T Consensus 46 ~~~~v~d~~dG 56 (93)
T smart00557 46 VPVEVKDNGDG 56 (93)
T ss_pred eEeEEEeCCCC
Confidence 34445555444
No 110
>PF11953 DUF3470: Domain of unknown function (DUF3470); InterPro: IPR022569 This functionally uncharacterised domain is found in bacteria and is about 50 amino acids in length. It is found C-terminal to PF00037 from PFAM. It contains a single completely conserved residue N that may be functionally important. ; PDB: 1FRX_A 1GAO_A 1FRL_A 1AXQ_A 1FTC_B 1FDA_A 1A6L_A 1FDD_A 1F5B_A 1F5C_A ....
Probab=30.22 E-value=34 Score=19.68 Aligned_cols=18 Identities=0% Similarity=-0.110 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhhcCCCCC
Q psy13669 155 KMTQVLYGYCLVALGVKR 172 (172)
Q Consensus 155 ~i~~~l~~~a~~~p~i~~ 172 (172)
.+.++...||-.+|.|++
T Consensus 3 ~f~elN~ela~~WP~It~ 20 (43)
T PF11953_consen 3 HFIELNAELAKKWPNITE 20 (43)
T ss_dssp HHHHHHHHHHTTS-BE-S
T ss_pred HHHHHHHHHHHhCCCcCc
Confidence 467789999999999874
No 111
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=29.60 E-value=1.5e+02 Score=19.20 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=28.7
Q ss_pred eeccHHHHHHHHHHhHhhcCCCeEEEEEEe--CCceEEEE--EeCCCCCChhhHHhh
Q psy13669 3 VVLNLATAVKELVENSLDAGATSVEVKLKD--YGSELVEV--TDNGGGVHEDNYEGL 55 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a~~i~i~~~~--~~~~~i~V--~DnG~Gi~~~~l~~~ 55 (172)
++.++..+|.|+ .++ ....++|.+.+ .+...+.+ .=.| |++.++|+.+
T Consensus 23 Ll~DPraaL~e~---G~~-~P~~~~i~VvE~t~~~~~lVlP~~P~~-~lse~~L~~v 74 (77)
T TIGR03793 23 LLTNPKEALERE---GVQ-VPAEVEVKVVEESPTVLYLVLPVNPDI-ELTDEQLDAV 74 (77)
T ss_pred HHHCHHHHHHHh---CCC-CCCceEEEEEEcCCCeEEEEecCCCCC-CCCHHHHHHh
Confidence 445666666665 333 34566776643 33444444 5666 9999998864
No 112
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=29.21 E-value=1.8e+02 Score=19.55 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=26.1
Q ss_pred HhhcCCCeEEEEEEe-CCceEEEEEeCCCC-----CChhhHHhhh
Q psy13669 18 SLDAGATSVEVKLKD-YGSELVEVTDNGGG-----VHEDNYEGLT 56 (172)
Q Consensus 18 a~da~a~~i~i~~~~-~~~~~i~V~DnG~G-----i~~~~l~~~~ 56 (172)
.+......+...+++ .+...+.|.|...| ||++++-.+.
T Consensus 49 ~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~ 93 (107)
T PF03646_consen 49 FLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLA 93 (107)
T ss_dssp HHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHH
T ss_pred HHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHH
Confidence 444555677777764 57789999999988 8988876654
No 113
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=27.10 E-value=85 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=18.9
Q ss_pred hcCCCeEEEEEEeCCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKDYGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~~~~~~i~V~DnG~G 46 (172)
|.....|.+.+...+ -.+.+.|+|.=
T Consensus 5 d~~gD~i~~yv~~~~-~~~~ltDdG~T 30 (90)
T PF08861_consen 5 DRDGDNIQIYVKKDD-DSIRLTDDGYT 30 (90)
T ss_pred CCCCCEEEEEEEECC-CeEEEecCHHH
Confidence 455667888886544 57999999863
No 114
>KOG3938|consensus
Probab=26.42 E-value=74 Score=26.01 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=17.0
Q ss_pred CCeEEEEEEeCCceEEEEEeCCCCCC
Q psy13669 23 ATSVEVKLKDYGSELVEVTDNGGGVH 48 (172)
Q Consensus 23 a~~i~i~~~~~~~~~i~V~DnG~Gi~ 48 (172)
++.|+|.- +.+.+-++|.|||.|..
T Consensus 127 ~kEv~v~K-sedalGlTITDNG~GyA 151 (334)
T KOG3938|consen 127 AKEVEVVK-SEDALGLTITDNGAGYA 151 (334)
T ss_pred ceeEEEEe-cccccceEEeeCCccee
Confidence 34455544 34566799999999954
No 115
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=24.34 E-value=36 Score=13.28 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=4.0
Q ss_pred ccCcccc
Q psy13669 75 TFGFRGE 81 (172)
Q Consensus 75 ~~G~~G~ 81 (172)
++|+.|+
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 4566664
No 116
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=24.00 E-value=2.2e+02 Score=25.11 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCC
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGG 45 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~ 45 (172)
..+.+.+|+..|++.+|+.|++... .+...|.++-||.
T Consensus 108 ~~~~~~~ll~~A~~~~ASDIHi~~~-~~~~~vr~RidG~ 145 (486)
T TIGR02533 108 VIRLVNSLLSRAVKERASDIHIEPF-EKALVVRFRVDGV 145 (486)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEC-CCceEEEEEECCE
Confidence 3467889999999999999999984 3456788888886
No 117
>PRK10436 hypothetical protein; Provisional
Probab=22.69 E-value=2.4e+02 Score=24.74 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCC
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGG 45 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~ 45 (172)
..+.+..|+..|++.+|+.|++.... +...+..+-||.
T Consensus 84 ~~~~l~~ll~~A~~~~ASDIHi~p~~-~~~~vr~RidG~ 121 (462)
T PRK10436 84 VAQLINQTLQSALQKRASDIHFEPAQ-NHYRIRLRIDGV 121 (462)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEcC-CceEEEEEECCE
Confidence 46688999999999999999998743 345677777775
No 118
>KOG3483|consensus
Probab=22.18 E-value=46 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=16.1
Q ss_pred eEEEEEeCCCCCChhhHH-hhhcc
Q psy13669 36 ELVEVTDNGGGVHEDNYE-GLTLK 58 (172)
Q Consensus 36 ~~i~V~DnG~Gi~~~~l~-~~~~~ 58 (172)
.+-.|.+||+||.+.+-. .+|..
T Consensus 56 tsaiitndgiginpaq~agnvflk 79 (94)
T KOG3483|consen 56 TSAIITNDGIGINPAQTAGNVFLK 79 (94)
T ss_pred ceeEEecCccccCccccccceeec
Confidence 356789999999987644 24443
No 119
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=21.31 E-value=88 Score=22.83 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=26.4
Q ss_pred HHHHHhHhhcCCC----eEEEEEEeCCceEEEEEeCCCCCChhhHH
Q psy13669 12 KELVENSLDAGAT----SVEVKLKDYGSELVEVTDNGGGVHEDNYE 53 (172)
Q Consensus 12 ~eLi~Na~da~a~----~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~ 53 (172)
+|++...+-|-+. -..|.+.+++.-.+.+.|||.||..+.++
T Consensus 23 keti~tT~~ampnt~paPa~itv~~~~~e~~afsddg~giq~~~lm 68 (142)
T PF12890_consen 23 KETIETTWCAMPNTFPAPAGITVEDDGEEAFAFSDDGYGIQIQLLM 68 (142)
T ss_pred hhhhhceeeecCccCCCCcceeeeecCcceEEEecCCceeeeHHHH
Confidence 4556555555321 13344444444579999999999988776
Done!