Query psy13669
Match_columns 172
No_of_seqs 189 out of 1741
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:24:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4l_A DNA mismatch repair pro 100.0 5.5E-40 1.9E-44 272.5 15.7 170 1-171 20-189 (367)
2 3na3_A DNA mismatch repair pro 100.0 3.7E-39 1.3E-43 265.6 15.1 169 1-171 23-192 (348)
3 1h7s_A PMS1 protein homolog 2; 100.0 2.4E-37 8.1E-42 257.0 17.5 171 1-171 29-199 (365)
4 1b63_A MUTL; DNA mismatch repa 100.0 1.7E-35 5.8E-40 243.4 15.8 169 1-171 19-188 (333)
5 3fv5_A DNA topoisomerase 4 sub 99.9 5E-28 1.7E-32 186.0 9.1 150 6-171 17-185 (201)
6 3t0h_A Heat shock protein HSP 99.9 4.4E-25 1.5E-29 172.4 8.8 156 2-168 28-209 (228)
7 4duh_A DNA gyrase subunit B; s 99.9 1.6E-24 5.6E-29 168.3 9.4 152 5-171 34-202 (220)
8 2ior_A Chaperone protein HTPG; 99.9 2.4E-24 8.1E-29 169.2 9.6 156 2-168 43-227 (235)
9 3o0i_A HSP90AA1 protein; HSP90 99.9 1.6E-24 5.4E-29 171.3 7.5 156 2-168 56-237 (256)
10 1ei1_A DNA gyrase B, GYRB; ATP 99.9 2.9E-24 1E-28 179.6 9.5 150 6-171 34-201 (391)
11 1s16_A Topoisomerase IV subuni 99.9 5.7E-24 2E-28 177.8 11.0 148 8-171 33-199 (390)
12 1zxm_A TOPO IIA ATPase, DNA to 99.9 4E-23 1.4E-27 173.0 10.2 156 4-171 50-226 (400)
13 4emv_A DNA topoisomerase IV, B 99.9 4.3E-23 1.5E-27 160.8 8.2 150 6-171 40-208 (226)
14 2wer_A ATP-dependent molecular 99.9 1.8E-22 6.3E-27 157.0 10.0 154 2-166 22-200 (220)
15 3cwv_A DNA gyrase, B subunit, 99.9 8.2E-23 2.8E-27 169.7 7.7 147 5-171 29-189 (369)
16 1yc1_A HSP 86, heat shock prot 99.9 5.4E-22 1.9E-26 158.0 10.5 154 2-166 64-241 (264)
17 1kij_A DNA gyrase subunit B; t 99.9 1.8E-21 6.3E-26 162.7 10.2 151 5-171 31-200 (390)
18 1y4s_A Chaperone protein HTPG; 99.8 3.9E-21 1.3E-25 166.6 11.5 156 2-168 23-207 (559)
19 2gqp_A Endoplasmin; GRP94, HSP 99.8 7.6E-21 2.6E-25 149.3 10.2 151 2-165 28-209 (236)
20 3lnu_A Topoisomerase IV subuni 99.8 3.4E-21 1.2E-25 161.2 8.6 150 6-171 50-218 (408)
21 2ioq_A Chaperone protein HTPG; 99.8 4.8E-21 1.6E-25 167.8 7.0 156 2-168 23-207 (624)
22 1qy5_A Endoplasmin; GRP94, NEC 99.8 1E-20 3.5E-25 150.9 7.1 150 3-165 25-205 (269)
23 3ttz_A DNA gyrase subunit B; p 99.8 2.1E-20 7.3E-25 143.1 7.9 137 6-171 31-175 (198)
24 3nmq_A Heat shock protein HSP 99.8 8.4E-20 2.9E-24 143.0 8.8 152 2-165 35-211 (239)
25 3peh_A Endoplasmin homolog; st 99.8 2E-19 6.9E-24 143.5 9.9 152 3-166 43-221 (281)
26 1mu5_A Type II DNA topoisomera 99.8 1.8E-18 6.1E-23 147.8 14.6 148 6-171 32-203 (471)
27 2zbk_B Type 2 DNA topoisomeras 99.8 2.8E-18 9.6E-23 148.3 13.8 148 6-171 31-202 (530)
28 2o1u_A Endoplasmin; GRP94, HSP 99.8 7E-19 2.4E-23 154.8 8.3 154 2-168 41-227 (666)
29 2cg9_A ATP-dependent molecular 99.8 6.7E-18 2.3E-22 148.7 13.2 152 3-166 23-200 (677)
30 1pvg_A DNA topoisomerase II; G 99.7 4.4E-18 1.5E-22 143.1 9.9 156 4-171 62-239 (418)
31 3ied_A Heat shock protein; HSP 99.7 5.7E-18 2E-22 133.2 9.3 127 26-165 121-261 (272)
32 2q2e_B Type 2 DNA topoisomeras 99.7 3.8E-18 1.3E-22 149.5 8.6 150 6-171 37-207 (621)
33 4gfh_A DNA topoisomerase 2; to 99.4 1.1E-12 3.6E-17 121.9 12.6 155 4-171 57-231 (1177)
34 2c2a_A Sensor histidine kinase 99.3 2.4E-12 8.1E-17 100.4 8.1 78 6-89 138-221 (258)
35 1id0_A PHOQ histidine kinase; 99.3 4E-12 1.4E-16 91.3 8.5 74 6-89 44-118 (152)
36 1bxd_A ENVZ(290-450), protein 99.3 5E-12 1.7E-16 91.9 7.6 76 6-89 47-123 (161)
37 1ysr_A Sensor-type histidine k 99.3 1.4E-11 4.7E-16 88.4 8.2 76 6-90 46-123 (150)
38 1i58_A Chemotaxis protein CHEA 99.2 1.6E-11 5.3E-16 91.6 6.5 77 7-90 48-163 (189)
39 1th8_A Anti-sigma F factor; SP 99.2 8.4E-11 2.9E-15 84.2 10.0 74 5-90 38-117 (145)
40 3d36_A Sporulation kinase B; G 99.2 3.9E-11 1.3E-15 92.0 8.8 73 6-89 123-198 (244)
41 2q8g_A [pyruvate dehydrogenase 99.2 2.4E-11 8.1E-16 101.6 7.8 84 6-89 243-336 (407)
42 3jz3_A Sensor protein QSEC; he 99.2 1.2E-11 4.1E-16 93.6 5.3 72 7-90 118-191 (222)
43 3a0y_A Sensor protein; ATP-LID 99.2 3.3E-11 1.1E-15 86.2 7.3 72 6-89 47-121 (152)
44 1y8o_A [pyruvate dehydrogenase 99.2 2.3E-11 8E-16 102.1 6.4 83 6-89 253-347 (419)
45 2e0a_A Pyruvate dehydrogenase 99.2 2.9E-11 9.8E-16 100.7 6.8 84 6-89 230-323 (394)
46 2btz_A Pyruvate dehydrogenase 99.2 2.2E-11 7.4E-16 101.3 6.1 91 6-97 231-336 (394)
47 4ew8_A Sensor protein DIVL; si 99.2 7.3E-11 2.5E-15 92.0 8.6 71 7-89 156-229 (268)
48 1gkz_A [3-methyl-2-oxobutanoat 99.2 2.2E-11 7.4E-16 101.1 5.4 59 6-64 238-307 (388)
49 1b3q_A Protein (chemotaxis pro 99.1 5.5E-11 1.9E-15 98.7 6.7 97 6-110 106-246 (379)
50 3a0r_A Sensor protein; four he 99.1 5.1E-11 1.8E-15 95.9 5.7 71 6-88 244-317 (349)
51 3sl2_A Sensor histidine kinase 99.1 1.4E-10 4.7E-15 85.6 7.0 78 6-89 43-125 (177)
52 1r62_A Nitrogen regulation pro 99.1 1.7E-10 6E-15 82.9 5.7 72 6-89 48-133 (160)
53 3ehg_A Sensor kinase (YOCF pro 99.0 1.2E-09 3.9E-14 76.7 6.3 47 6-52 40-88 (128)
54 4fpp_A Phosphotransferase; fou 98.9 1.3E-09 4.4E-14 85.1 6.9 72 6-89 146-222 (247)
55 3zxo_A Redox sensor histidine 98.9 3.3E-09 1.1E-13 73.9 6.5 45 6-51 43-89 (129)
56 3ehh_A Sensor kinase (YOCF pro 98.8 5.8E-09 2E-13 78.8 7.1 46 7-52 131-178 (218)
57 3zxq_A Hypoxia sensor histidin 98.8 8.6E-09 2.9E-13 71.4 6.4 45 6-51 39-85 (124)
58 3ke6_A Protein RV1364C/MT1410; 97.9 1.7E-05 5.9E-10 66.0 6.2 68 4-94 295-370 (399)
59 1ixm_A SPO0B, protein (sporula 97.2 0.00026 8.8E-09 53.4 4.0 53 7-59 106-169 (192)
60 4h62_V Mediator of RNA polymer 59.8 4.8 0.00016 20.0 1.5 12 9-20 12-23 (31)
61 2w0p_A Filamin-A; alternative 49.3 21 0.00073 22.6 3.9 28 19-46 29-56 (94)
62 2bp3_A Filamin A; structural p 42.9 21 0.00073 22.7 3.1 27 20-46 33-59 (97)
63 3rgh_A Filamin-A; cell adhesio 42.2 16 0.00054 23.7 2.4 27 20-46 35-63 (100)
64 2ee6_A Filamin-B; beta-sandwic 38.4 22 0.00075 23.1 2.6 27 20-46 38-64 (105)
65 3lmm_A Uncharacterized protein 38.0 27 0.00091 30.2 3.8 44 7-53 297-349 (583)
66 2k9u_A Gamma filamin; cytoskel 34.6 26 0.00088 23.3 2.5 10 37-46 62-71 (119)
67 1j0g_A Hypothetical protein 18 33.6 14 0.00049 23.5 1.0 23 37-59 54-77 (92)
68 3cnk_A Filamin-A; FLNA24, X-RA 30.7 33 0.0011 21.3 2.5 27 20-46 26-54 (89)
69 2dia_A Filamin-B; beta-sandwic 30.2 36 0.0012 22.3 2.7 27 20-46 38-66 (113)
70 2eec_A Filamin-B; beta-sandwic 29.1 29 0.00099 23.5 2.1 10 21-30 49-58 (125)
71 2di9_A Filamin-B; beta-sandwic 29.0 37 0.0013 23.0 2.6 8 38-45 76-83 (131)
72 1v05_A Filamin C; actin-bindin 28.8 44 0.0015 21.0 2.9 10 37-46 52-61 (96)
73 2nqc_A Filamin-C; immunoglobul 24.7 43 0.0015 23.1 2.3 7 38-44 90-96 (138)
74 1p9r_A General secretion pathw 24.4 1.5E+02 0.0051 24.3 5.9 38 7-45 33-70 (418)
75 2dmb_A Filamin-B; beta-sandwic 23.8 38 0.0013 22.8 1.9 9 38-46 59-67 (124)
76 2hc5_A ORF 99, hypothetical pr 22.6 1.8E+02 0.0061 19.4 5.7 41 16-56 48-94 (117)
77 2d7m_A Filamin-C; beta-sandwic 22.3 57 0.0019 21.4 2.5 7 39-45 61-67 (115)
No 1
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-40 Score=272.49 Aligned_cols=170 Identities=48% Similarity=0.772 Sum_probs=150.3
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.++.++|.|||+||+||+|+.|.|.+.+++...|+|.|||+||++++++.+|++|++||..+.+|+....++|++|
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrG 99 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRG 99 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETT
T ss_pred CCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccc
Confidence 37899999999999999999999999999976667789999999999999999999999999998887888888999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVL 160 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l 160 (172)
+||+|++++|+|+|+|++.+ ..+|++.++.+|.+....++..++||+|+|+|||+|+|+|+++|+++.+.++..+.+++
T Consensus 100 eaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l 178 (367)
T 3h4l_A 100 EALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVI 178 (367)
T ss_dssp HHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEEeeccccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHH
Confidence 99999999999999999988 77899999767888777777889999999999999999999989899999999999999
Q ss_pred HHhhhhcCCCC
Q psy13669 161 YGYCLVALGVK 171 (172)
Q Consensus 161 ~~~a~~~p~i~ 171 (172)
++||++||+|+
T Consensus 179 ~~~Al~~p~v~ 189 (367)
T 3h4l_A 179 QGYAIINAAIK 189 (367)
T ss_dssp HHHHHHCTTCE
T ss_pred HHHHhhCCCeE
Confidence 99999999985
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=265.61 Aligned_cols=169 Identities=31% Similarity=0.543 Sum_probs=147.0
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.+|.+++.|||+||+||+++.|.|.+..++...|.|.|||+||++++++.+|++|+++|..+.+|+....++|++|
T Consensus 23 gevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrG 102 (348)
T 3na3_A 23 GEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRG 102 (348)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTT
T ss_pred cCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCC
Confidence 37899999999999999999999999999976556679999999999999999999999999998877887788999999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEEE-eeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKT-KTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQV 159 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~ 159 (172)
+||+|++++|+++|+|++.+...+|++.++ +|.+.. ..+...++||+|+++|||+|+|+|++ ++++.+.++..+.++
T Consensus 103 eaL~Si~avs~l~v~sr~~~~~~~~~~~~~-~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k-~lk~~~~e~~~i~~~ 180 (348)
T 3na3_A 103 EALASISHVAHVTITTKTADGKCAYRASYS-DGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK-ALKNPSEEYGKILEV 180 (348)
T ss_dssp CHHHHHHHSSEEEEEEECTTCSSEEEEEEE-TTEESSCCEEECCCSEEEEEEESTTTTCHHHHH-TSCCHHHHHHHHHHH
T ss_pred hHHHHhhcccEEEEEEEECCCCceEEEEEe-CCEEeeeeeEecCCCCcEEEECcccccCchhhh-hccccHHHHHHHHHH
Confidence 999999999999999999998889999998 777653 45667789999999999999999998 678889999999999
Q ss_pred HHHhhhhcCCCC
Q psy13669 160 LYGYCLVALGVK 171 (172)
Q Consensus 160 l~~~a~~~p~i~ 171 (172)
+++||++||+|+
T Consensus 181 l~~~Al~~p~v~ 192 (348)
T 3na3_A 181 VGRYSVHNAGIS 192 (348)
T ss_dssp HHHHHHHCTTCE
T ss_pred HHHHHhhCCCeE
Confidence 999999999985
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=2.4e-37 Score=257.00 Aligned_cols=171 Identities=66% Similarity=1.007 Sum_probs=147.2
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.++.++|.|||+||+||+++.|.|.+...+...|+|.|||+||++++++.+|.+|+++|....+|...+.++|++|
T Consensus 29 gevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG 108 (365)
T 1h7s_A 29 GQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRG 108 (365)
T ss_dssp CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSS
T ss_pred CCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCC
Confidence 47899999999999999999999999999975555689999999999999999999999999987666666677899999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCeEEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVL 160 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l 160 (172)
+||+|++.+++++|.|++.+...+|++.++++|.+....+...++||+|++++||+++|+|+++|+++.+.++.++.+++
T Consensus 109 ~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v 188 (365)
T 1h7s_A 109 EALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVL 188 (365)
T ss_dssp SHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHH
T ss_pred chhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEeecccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhh
Confidence 99999999999999999988877899999867877766666778999999999999999999989889999999999999
Q ss_pred HHhhhhcCCCC
Q psy13669 161 YGYCLVALGVK 171 (172)
Q Consensus 161 ~~~a~~~p~i~ 171 (172)
++||+.||+|+
T Consensus 189 ~~~al~~p~v~ 199 (365)
T 1h7s_A 189 HAYCIISAGIR 199 (365)
T ss_dssp HHHHHHCTTCE
T ss_pred hhhhhcCCceE
Confidence 99999999985
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=1.7e-35 Score=243.36 Aligned_cols=169 Identities=33% Similarity=0.503 Sum_probs=147.3
Q ss_pred CceeccHHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 1 MAVVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 1 ~~~i~~~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+|+|.++.++|.|||+||+||+++.|.|.+..++...|+|.|||+||++++++.+|.+|++||..+.+|.....++|++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G 98 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRG 98 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSS
T ss_pred CCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccc
Confidence 37899999999999999999999999999975555689999999999999999999999999876555555567889999
Q ss_pred chhcccccccceEEEEeecCCCceEEEEEecCCe-EEEeeeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHH
Q psy13669 81 EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGH-IKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQV 159 (172)
Q Consensus 81 ~gl~s~~~~~~v~i~T~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~ 159 (172)
+||++++.+++++|.|++.+...+|.+..+ .+. .....+...++||+|++++||+|+|+|++ |+++.+.++.++.++
T Consensus 99 ~gl~si~~vs~l~v~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~k-flk~~~~e~~~i~~~ 176 (333)
T 1b63_A 99 EALASISSVSRLTLTSRTAEQQEAWQAYAE-GRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEI 176 (333)
T ss_dssp CHHHHHHTTSEEEEEEECTTCSSEEEEEEE-TTTTEEEEEEECCCSEEEEEEESTTTTCHHHHH-TCCCHHHHHHHHHHH
T ss_pred cchhhhhcCCcEEEEEecCCCceEEEEEEc-CCcceEeeecccCCCCCEEEEecccccchhhhh-hhccHHHHHHHHHHH
Confidence 999999999999999999887778888655 333 33444556789999999999999999988 878888999999999
Q ss_pred HHHhhhhcCCCC
Q psy13669 160 LYGYCLVALGVK 171 (172)
Q Consensus 160 l~~~a~~~p~i~ 171 (172)
+++||++||+++
T Consensus 177 ~~~~al~~p~v~ 188 (333)
T 1b63_A 177 IRRIALARFDVT 188 (333)
T ss_dssp HHHHHHHCTTCE
T ss_pred HHHHhccCCCcE
Confidence 999999999874
No 5
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.95 E-value=5e-28 Score=186.00 Aligned_cols=150 Identities=27% Similarity=0.337 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHhHhhc---C-CCeEEEEEEeCCceEEEEEeCCCCCChhh--------HHh-hhccCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLDA---G-ATSVEVKLKDYGSELVEVTDNGGGVHEDN--------YEG-LTLKHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da---~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~-~~~~~~~sk~~~~~~~~~ 72 (172)
++.+++.|||+||+|| + ++.|.|.+..++ .|+|.|||+|||.++ ++. ++.++.+||+++ +.+.
T Consensus 17 ~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~--~~~~ 92 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQ 92 (201)
T ss_dssp STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------------
T ss_pred ChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC--Cccc
Confidence 3478999999999999 5 999999996444 799999999999988 445 578899999865 3333
Q ss_pred ccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEe-ee--ec--CCCceEEEEcccccCChHhHHHHh
Q psy13669 73 VETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTK-TL--VS--RQVGTTVSLHNIFSTLPVRQKEFH 146 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~-~~--~~--~~~GT~V~i~~lf~~~p~r~~~~~ 146 (172)
.+.|++|+||++++++| .++|+|+..+. .|++.|. .|..... .+ .. .+.||+|+++ |+|++ |
T Consensus 93 -~s~GfrGeglssinalS~~l~v~t~~~g~--~~~~~~~-~G~~~~~~~~~g~~~~~~~GT~V~f~------Pdr~~-F- 160 (201)
T 3fv5_A 93 -FSGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFE-NGEKVQDLQVVGTCGKRNTGTSVHFW------PDETF-F- 160 (201)
T ss_dssp ----------CHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEEEEEEEEEEECCTTCCEEEEEEE------ECGGG-S-
T ss_pred -ccCcccceecchhhcccceEEEEEEecCc--eEEEEEe-CCEEcccceecccCCCCCCCeEEEEE------ECHHH-c-
Confidence 36899999999999999 69999998664 5999998 7776532 21 12 6799999984 88865 6
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 147 RHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 147 ~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
++.+.+++.|.+++++||++||+|+
T Consensus 161 ~~~~~e~~~i~~~l~~lA~l~pgv~ 185 (201)
T 3fv5_A 161 DSPRFSVSRLTHVLKAKAVLCPGVE 185 (201)
T ss_dssp SCCCCCHHHHHHHHHHHHHHSTTCE
T ss_pred CCCccCHHHHHHHHHHHHHhCCCCE
Confidence 7778899999999999999999985
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.92 E-value=4.4e-25 Score=172.36 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=115.8
Q ss_pred ceeccHHHHHHHHHHhHhhcCCC----------------eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 2 AVVLNLATAVKELVENSLDAGAT----------------SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a~----------------~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++++..+|+|||+||+||++. .+.|.+. +.+...|.|.|||+||+++++...+.++++|+.
T Consensus 28 ~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~ 107 (228)
T 3t0h_A 28 TFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 107 (228)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHH
T ss_pred hhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhhccccc
Confidence 46788899999999999999753 3445443 445668999999999999999988888888765
Q ss_pred ccccc-c---ccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEee--eecCCCceEEEEcccccC
Q psy13669 65 REFTD-L---TSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKT--LVSRQVGTTVSLHNIFST 137 (172)
Q Consensus 65 ~~~~~-~---~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~GT~V~i~~lf~~ 137 (172)
..+.+ + ..+..+|++|+||+|++.++ +|+|.|++.+ ..+|.|.++.++.+.... +...+.||+|+|. |
T Consensus 108 ~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~~~~~GT~I~v~-L--- 182 (228)
T 3t0h_A 108 KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH-L--- 182 (228)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE-E---
T ss_pred hhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCCCCCCCcEEEEE-E---
Confidence 43321 1 34678999999999999999 6999999976 458999988555544322 1256899999997 1
Q ss_pred ChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 138 LPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 138 ~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
.....+|+ +..++.+++.+|| +.+|
T Consensus 183 -k~~~~E~~-----e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 183 -KEDQTEYL-----EERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp -CGGGGGGG-----SHHHHHHHHHHHSTTCSSC
T ss_pred -CCchhhhh-----hHHHHHHHHHHHHhhCCCC
Confidence 11111121 1258999999999 8887
No 7
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.91 E-value=1.6e-24 Score=168.33 Aligned_cols=152 Identities=23% Similarity=0.306 Sum_probs=115.0
Q ss_pred ccHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhhH--------Hhhh-ccCccCCcccccccc
Q psy13669 5 LNLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDNY--------EGLT-LKHHTSKLREFTDLT 71 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l--------~~~~-~~~~~sk~~~~~~~~ 71 (172)
+.|.+++.|||+||+|+ .++.|.|.+..++ .|+|.|||.|||.+.. +.+| ..+.++|+++. .
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~---~ 108 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN---S 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTT---C
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCcccccccccCcchhhheeeecccCCCcCCC---c
Confidence 35789999999999999 7999999996544 7999999999999864 3444 67888998642 2
Q ss_pred cccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEE---eeeecCCCceEEEEcccccCChHhHHHHhH
Q psy13669 72 SVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKT---KTLVSRQVGTTVSLHNIFSTLPVRQKEFHR 147 (172)
Q Consensus 72 ~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~GT~V~i~~lf~~~p~r~~~~~~ 147 (172)
...+.|++|+|+++++++| .++|++++.+. .|++.|. .|.... .......+||+|+++ |.+.+ |..
T Consensus 109 yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~--~~~~~f~-~G~~~~~l~~~g~~~~~GT~V~F~------Pd~~~-F~~ 178 (220)
T 4duh_A 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGK--IHRQIYE-HGVPQAPLAVTGETEKTGTMVRFW------PSLET-FTN 178 (220)
T ss_dssp --------CCCHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEESSSCEEEEECSCCEEEEEEE------ECTTT-CCS
T ss_pred cccccCccceecchhcccccceEEEEEECCE--EEEEEec-CCcCcCCceeccccCCCCcEEEEE------ECHHH-hCC
Confidence 2357899999999999999 59999988663 5899998 676542 223457899999975 66554 654
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 148 HLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 148 ~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
..+.+++.|.++++++|++||+|+
T Consensus 179 ~~~~~~~~l~~rlrelA~ln~gv~ 202 (220)
T 4duh_A 179 VTEFEYEILAKRLRELSFLNSGVS 202 (220)
T ss_dssp SCSCCHHHHHHHHHHHHHHCTTSE
T ss_pred cccCCHHHHHHHHHHHHhcCCCCE
Confidence 446788999999999999999985
No 8
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.91 E-value=2.4e-24 Score=169.19 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=115.7
Q ss_pred ceeccHHHHHHHHHHhHhhcC----------------CCe--EEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAG----------------ATS--VEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~----------------a~~--i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
+++.++..+|+|||+||+||+ +.. |.|.+. .+...|.|.|||+||+++++...|..+.+|+
T Consensus 43 ~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~-~~~~~i~I~DnG~GMs~edl~~~~~~ia~S~ 121 (235)
T 2ior_A 43 SLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD-KDKRTLTISDNGVGMTRDEVIDHLGTIAKSG 121 (235)
T ss_dssp HTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSSCCCHHHHHHHHTTCCCTT
T ss_pred hhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc-CCceEEEEEECCCCCCHHHHHHHHHHHcccc
Confidence 467788999999999999997 443 555553 3334699999999999999999888888876
Q ss_pred cccccc------cccccccCcccchhccccccc-ceEEEEeecCC--CceEEEEEecCCeEEEeeeecCCCceEEEEccc
Q psy13669 64 LREFTD------LTSVETFGFRGEALSSLCALS-SVVIVTRHKLS--GVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNI 134 (172)
Q Consensus 64 ~~~~~~------~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~l 134 (172)
...+.+ ......+|++|+||+|++.++ +++|.|+..+. ..+|.|.++.++.+.........+||+|+|. |
T Consensus 122 ~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i~~~~~~~~GT~V~v~-L 200 (235)
T 2ior_A 122 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH-L 200 (235)
T ss_dssp HHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE-E
T ss_pred ccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEEeeCCCCCCCEEEEEE-E
Confidence 433211 123467899999998887776 59999999876 6789998875555543332356899999996 2
Q ss_pred ccCChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 135 FSTLPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 135 f~~~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
. +.+++ |+ +..++.+++++|| +.+|
T Consensus 201 -k--~~~~~-~~-----e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 201 -R--EGEDE-FL-----DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp -C--TTCGG-GG-----CHHHHHHHHHHHTTSCCSC
T ss_pred -c--Cchhh-hC-----CHHHHHHHHHHHhccCCCC
Confidence 1 22322 32 3578999999999 8887
No 9
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.90 E-value=1.6e-24 Score=171.29 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=115.4
Q ss_pred ceeccHHHHHHHHHHhHhhcCCC----------------eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 2 AVVLNLATAVKELVENSLDAGAT----------------SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a~----------------~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
+++++...+|+|||+||+||.+. .+.|.+. +.+...|+|.|||+||+++++...+.++++|+.
T Consensus 56 ~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~ 135 (256)
T 3o0i_A 56 TFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 135 (256)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccc
Confidence 46788889999999999999753 3444443 445668999999999999999888877777765
Q ss_pred ccccc-c---ccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEee--eecCCCceEEEEcccccC
Q psy13669 65 REFTD-L---TSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKT--LVSRQVGTTVSLHNIFST 137 (172)
Q Consensus 65 ~~~~~-~---~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~GT~V~i~~lf~~ 137 (172)
..+.+ + ..+..+|++|+||+|++.++ +|+|.|++.+ ..+|.|..+.++.+.... +...+.||+|+|. | ..
T Consensus 136 ~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~-L-K~ 212 (256)
T 3o0i_A 136 KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH-L-KE 212 (256)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE-E-CG
T ss_pred cchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCCCCCCCcEEEEE-E-cC
Confidence 43221 1 34678999999999999999 6999999876 468999988555554332 2356899999997 1 11
Q ss_pred ChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 138 LPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 138 ~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
. . .+++ +..+|.+++++|| +.+|
T Consensus 213 ~--~-~e~~-----e~~~I~~iv~k~s~~l~~P 237 (256)
T 3o0i_A 213 D--Q-TEYL-----EERRIKEIVKKHSQFIGYP 237 (256)
T ss_dssp G--G-GGGG-----CHHHHHHHHHHHCTTCSSC
T ss_pred c--c-hhhc-----cHHHHHHHHHHHHhhCCCC
Confidence 1 0 1121 2368999999999 8888
No 10
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.90 E-value=2.9e-24 Score=179.57 Aligned_cols=150 Identities=24% Similarity=0.334 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHhHhhc---C-CCeEEEEEEeCCceEEEEEeCCCCCChhh--------HHhhhc-cCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLDA---G-ATSVEVKLKDYGSELVEVTDNGGGVHEDN--------YEGLTL-KHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da---~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~~~~-~~~~sk~~~~~~~~~ 72 (172)
.+.+++.|||+||+|+ + ++.|.|.+..++ .|+|.|||+|||.++ ++.+|. .+.++|+++ +.+.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~--~~~~ 109 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--NSYK 109 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSS--SSCS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCC--Cccc
Confidence 6789999999999998 5 999999996554 899999999999988 444555 688899864 2222
Q ss_pred ccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEE-e--eeecCCCceEEEEcccccCChHhHHHHhHh
Q psy13669 73 VETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKT-K--TLVSRQVGTTVSLHNIFSTLPVRQKEFHRH 148 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~ 148 (172)
.+.|++|+|+++++++|+ ++++|+..+ ..|.+.|. .|.+.. . ......+||+|+++ |++.+ | +.
T Consensus 110 -vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~-~G~~~~~l~~~~~~~~~GT~V~f~------Pd~~~-F-~~ 177 (391)
T 1ei1_A 110 -VSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYE-HGVPQAPLAVTGETEKTGTMVRFW------PSLET-F-TN 177 (391)
T ss_dssp -SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEESSCCEEEEECSCCEEEEEEE------ECTTT-C-CS
T ss_pred -ccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEc-CCcccccceeccCcCCCccEEEEE------EChhh-h-CC
Confidence 378999999999999994 999999765 46999998 565532 1 11236899999986 77655 5 45
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 149 -LKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 149 -~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+.+++.|.++++++|++||+|+
T Consensus 178 ~~~~e~~~l~~rlr~lA~lnpgv~ 201 (391)
T 1ei1_A 178 VTEFEYEILAKRLRELSFLDSGVS 201 (391)
T ss_dssp CCSCCHHHHHHHHHHHHHHSTTCE
T ss_pred ccccCHHHHHHHHHHhcccCCCcE
Confidence 56678999999999999999985
No 11
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.90 E-value=5.7e-24 Score=177.82 Aligned_cols=148 Identities=26% Similarity=0.326 Sum_probs=118.9
Q ss_pred HHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhh--------HHhhhcc-CccCCccccccccccc
Q psy13669 8 ATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDN--------YEGLTLK-HHTSKLREFTDLTSVE 74 (172)
Q Consensus 8 ~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~~~~~-~~~sk~~~~~~~~~~~ 74 (172)
.+++.|||+||+|+ .++.|.|.+..++ .|+|.|||+|||.++ ++.+|.. +.++|+++ +.+. .
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~--~~~~-~ 107 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQ-F 107 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSS--SSCS-S
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCC--Cccc-c
Confidence 78999999999998 4999999996544 799999999999998 6777766 78889864 2222 3
Q ss_pred ccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEE-eee--ec--CCCceEEEEcccccCChHhHHHHhHh
Q psy13669 75 TFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKT-KTL--VS--RQVGTTVSLHNIFSTLPVRQKEFHRH 148 (172)
Q Consensus 75 ~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~-~~~--~~--~~~GT~V~i~~lf~~~p~r~~~~~~~ 148 (172)
+.|++|+|+++++++| .++|+|+..+ ..|.+.|. .|.+.. ..+ .. ..+||+|+++ |++.+ | ++
T Consensus 108 sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~-~G~~~~~~~~~g~~~~~~~GT~V~f~------Pd~~~-F-~~ 176 (390)
T 1s16_A 108 SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFE-NGEKVQDLQVVGTCGKRNTGTSVHFW------PDETF-F-DS 176 (390)
T ss_dssp CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEEEEEEEEEEECCTTCCEEEEEEE------ECGGG-S-SC
T ss_pred cCCccccchHHHHHhhcccEEEEEECC--cEEEEEEe-CCcccccceecccccCCCCceEEEEE------ECccc-c-Cc
Confidence 7899999999999999 5999999755 46999998 676543 222 12 2799999987 66655 5 55
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 149 LKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 149 ~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
...+++.|.++++++|++||+|+
T Consensus 177 ~~~e~~~l~~rl~~lA~lnpgv~ 199 (390)
T 1s16_A 177 PRFSVSRLTHVLKAKAVLCPGVE 199 (390)
T ss_dssp CSCCHHHHHHHHHHHHHHSTTCE
T ss_pred ccccHHHHHHHHHHHHhcCCCcE
Confidence 66788999999999999999985
No 12
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.89 E-value=4e-23 Score=173.00 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=118.3
Q ss_pred eccHHHHHHHHHHhHhhcC-----CCeEEEEEEeCCceEEEEEeCCCCCChhh--------HHhhhc-cCccCCcccccc
Q psy13669 4 VLNLATAVKELVENSLDAG-----ATSVEVKLKDYGSELVEVTDNGGGVHEDN--------YEGLTL-KHHTSKLREFTD 69 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~-----a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~~~~-~~~~sk~~~~~~ 69 (172)
++.+.+++.|||+||+|+. ++.|.|.++.++ ..|+|.|||+|||.+. ++.+|. .++++|+++ +
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~ 126 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--D 126 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--G
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCC-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--C
Confidence 5678999999999999987 889999997542 3899999999999987 555555 688999865 3
Q ss_pred cccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEee---eecCCCceEEEEcccccCChHhHHHH
Q psy13669 70 LTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKT---LVSRQVGTTVSLHNIFSTLPVRQKEF 145 (172)
Q Consensus 70 ~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GT~V~i~~lf~~~p~r~~~~ 145 (172)
.+. .+.|++|+|+++++++| .++|+++.......|.+.|.......... ++...+||+|+++ |++.+ |
T Consensus 127 ~yk-vSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~i-F 198 (400)
T 1zxm_A 127 EKK-VTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSK-F 198 (400)
T ss_dssp GCC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGG-G
T ss_pred ccc-ccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEE------EChHH-h
Confidence 333 37899999999999997 49999988655677999998332333221 2235689999987 66654 5
Q ss_pred hHhHHHHHHH---HHHHHHHhhhhcCCCC
Q psy13669 146 HRHLKKEFAK---MTQVLYGYCLVALGVK 171 (172)
Q Consensus 146 ~~~~~~~~~~---i~~~l~~~a~~~p~i~ 171 (172)
+.....++. |.++++++|++||+|+
T Consensus 199 -~~~ef~~~~~~~l~~rlrelA~lnpgv~ 226 (400)
T 1zxm_A 199 -KMQSLDKDIVALMVRRAYDIAGSTKDVK 226 (400)
T ss_dssp -TCSSCCHHHHHHHHHHHHHHHHHSSSCE
T ss_pred -CceeecHHHHHHHHHHHHHHHhhCCCcE
Confidence 332223333 8899999999999985
No 13
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.88 E-value=4.3e-23 Score=160.79 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=109.9
Q ss_pred cHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhh-------HHhhh-ccCccCCcccccccccc
Q psy13669 6 NLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDN-------YEGLT-LKHHTSKLREFTDLTSV 73 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~-------l~~~~-~~~~~sk~~~~~~~~~~ 73 (172)
.+.+++.|+|+||+|+ .++.|.|.+..++ .|+|.|||.|||.+. ++.+| ..+.++|+++. ...
T Consensus 40 gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~---~yk 114 (226)
T 4emv_A 40 GLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQG---GYK 114 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccccCceehheeEEeecccCccCcc---ceE
Confidence 4788999999999998 7899999996444 799999999999998 66655 67888897642 234
Q ss_pred cccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCC-eEEE----eeee-cCCCceEEEEcccccCChHhHHHHh
Q psy13669 74 ETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHG-HIKT----KTLV-SRQVGTTVSLHNIFSTLPVRQKEFH 146 (172)
Q Consensus 74 ~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g-~~~~----~~~~-~~~~GT~V~i~~lf~~~p~r~~~~~ 146 (172)
.+.|++|+|+++++++| .++|++++.+. .|++.|. .| .+.. ..++ ...+||+|+++ |++.. |
T Consensus 115 ~SgGlhGvG~svvNALS~~l~v~v~r~g~--~~~q~f~-~Gg~~~~~l~~ig~~~~~~~GT~V~F~------PD~~i-F- 183 (226)
T 4emv_A 115 TSGGLHGVGSSVVNALSSWLEVEITRDGA--VYKQRFE-NGGKPVTTLKKIGTALKSKTGTKVTFM------PDATI-F- 183 (226)
T ss_dssp ---CGGGCCHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTTEESSCSEEEEECCTTCCEEEEEEE------ECTTT-C-
T ss_pred eccccccccchhhhhcccceEEEEEeCCc--EEEEEEC-CCCEEcCCceEecccCCCCCCeEEEEE------ECHHH-c-
Confidence 57899999999999999 59999988664 5899998 55 6542 1223 26899999985 55443 4
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 147 RHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 147 ~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+....+++.|.++++.+|++||+|+
T Consensus 184 ~~~~~~~~~l~~rlrelA~ln~gv~ 208 (226)
T 4emv_A 184 STTDFKYNTISERLNESAFLLKNVT 208 (226)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCCcCHHHHHHHHHHHhhcCCCCE
Confidence 4455678899999999999999985
No 14
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.88 E-value=1.8e-22 Score=156.96 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=108.7
Q ss_pred ceeccHHHHHHHHHHhHhhcCC----------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 2 AVVLNLATAVKELVENSLDAGA----------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a----------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
+++.+...+|+|||+||+||++ ..+.|.+. +.+...|.|.|||+||+++++...|..+++|..
T Consensus 22 ~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~ 101 (220)
T 2wer_A 22 TVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 101 (220)
T ss_dssp HCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTH
T ss_pred hccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccc
Confidence 3667888999999999999987 34444443 334568999999999999999888877766532
Q ss_pred ccc----cccccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEEEccccc
Q psy13669 65 REF----TDLTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVSLHNIFS 136 (172)
Q Consensus 65 ~~~----~~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~i~~lf~ 136 (172)
..+ .........|.+|+|++|++.++ +++|.|++.+. .++.|..+.++.+..... ....+||+|+|. |.
T Consensus 102 ~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~-Lk- 178 (220)
T 2wer_A 102 KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-LK- 178 (220)
T ss_dssp HHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSSSCCCSSEEEEEEE-EC-
T ss_pred hhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccCCCCCCCCeEEEEE-EC-
Confidence 211 11123457899999999888887 59999999764 478888875555543222 256899999997 32
Q ss_pred CChHhHHHHhHhHHHHHHHHHHHHHHhhhh
Q psy13669 137 TLPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166 (172)
Q Consensus 137 ~~p~r~~~~~~~~~~~~~~i~~~l~~~a~~ 166 (172)
+.+.+ |+ +..++.+++++||..
T Consensus 179 --~~~~~-~~-----e~~~i~~~v~~~a~~ 200 (220)
T 2wer_A 179 --DDQLE-YL-----EEKRIKEVIKRHSEF 200 (220)
T ss_dssp --TTCGG-GG-----CHHHHHHHHHHHCTT
T ss_pred --cchHH-hC-----CHHHHHHHHHHHHhc
Confidence 12222 32 346889999999843
No 15
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.87 E-value=8.2e-23 Score=169.67 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=114.9
Q ss_pred ccHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 5 LNLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
+.|.+++.|||+||+|+ .++.|.|.+..++ .|+|.|||+|||. +.+|..+++||+++.+. ...++..|
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~---e~v~~lhagsKf~~~~~---~~~y~vsG 100 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA---ENLVRVATGAGFLGRPP---GDGWGWDS 100 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH---HHHHHHHTTTTGGGSSC---CCSTTTTS
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH---hHeeeeecCCCcCCCcc---cccccccC
Confidence 35789999999999998 7999999997555 7999999999999 34457789999875320 02344556
Q ss_pred chhccccccc-ceEEEEeecCCCceEEEEEecCCeE------EEe-eee--cCCCceEEEEcccccCChHhHHHHhHhHH
Q psy13669 81 EALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHI------KTK-TLV--SRQVGTTVSLHNIFSTLPVRQKEFHRHLK 150 (172)
Q Consensus 81 ~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~------~~~-~~~--~~~~GT~V~i~~lf~~~p~r~~~~~~~~~ 150 (172)
|+++++++| .++|+|+..+. .|++.|. .|.+ ... .+. ..++||+|+++ |++++ | ++.+
T Consensus 101 -Gls~vnalSs~l~v~t~r~g~--~~~~~~~-~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~------Pd~~~-F-~~~~ 168 (369)
T 3cwv_A 101 -MLVVSLALSSRYQVDIWADGR--QWRVMGE-HGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDATI-F-EVLA 168 (369)
T ss_dssp -SHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTTT-C-SCCC
T ss_pred -HHHHHHHhhceEEEEEEECCC--EEEEEEe-CCcccccccccCCceEecccCCCCCEEEEE------ECHHH-h-CCcc
Confidence 899999997 59999998654 6999998 6765 321 221 25799999987 77765 5 5666
Q ss_pred HHHHHHHHHHHHhhhhcCCCC
Q psy13669 151 KEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 151 ~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.+++.|.++++++|++||+|+
T Consensus 169 ~e~~~l~~rl~~lA~lnpgv~ 189 (369)
T 3cwv_A 169 FDRARLSRRCNELAALAPGLR 189 (369)
T ss_dssp CCHHHHHHHHHHHHHHSTTCE
T ss_pred ccHHHHHHHHHHHcCcCCCcE
Confidence 788999999999999999985
No 16
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.87 E-value=5.4e-22 Score=158.00 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=112.4
Q ss_pred ceeccHHHHHHHHHHhHhhcCC----------------CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 2 AVVLNLATAVKELVENSLDAGA----------------TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a----------------~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
+++.++..+|+|||+||+||++ +.|.|.+. +.+...|.|.|||+||+++++...|.++++|+.
T Consensus 64 ~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~ 143 (264)
T 1yc1_A 64 TFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 143 (264)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCH
T ss_pred hccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccc
Confidence 4678899999999999999987 66777764 344568999999999999999988888887764
Q ss_pred ccc----cccccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee--ecCCCceEEEEcccccC
Q psy13669 65 REF----TDLTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL--VSRQVGTTVSLHNIFST 137 (172)
Q Consensus 65 ~~~----~~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~i~~lf~~ 137 (172)
..+ .........|.+|+|++|++.++ +|+|.|+..+. .+|.|..+.++.+..... ....+||+|+|. |.
T Consensus 144 ~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~-Lk-- 219 (264)
T 1yc1_A 144 KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEPMGRGTKVILH-LK-- 219 (264)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE-EC--
T ss_pred hhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCCCCCCeEEEEE-EC--
Confidence 331 11123457899999999888887 59999999774 468888875555432221 245799999997 21
Q ss_pred ChHhHHHHhHhHHHHHHHHHHHHHHhhhh
Q psy13669 138 LPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166 (172)
Q Consensus 138 ~p~r~~~~~~~~~~~~~~i~~~l~~~a~~ 166 (172)
+.+.. |+ +..++.+++++||..
T Consensus 220 -~~~~e-~~-----e~~~i~~lv~k~s~f 241 (264)
T 1yc1_A 220 -EDQTE-YL-----EERRIKEIVKKHSQF 241 (264)
T ss_dssp -GGGGG-GG-----SHHHHHHHHHHHTTT
T ss_pred -Cchhh-hh-----hHHHHHHHHHHHHhh
Confidence 12222 32 456889999999843
No 17
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.85 E-value=1.8e-21 Score=162.73 Aligned_cols=151 Identities=25% Similarity=0.354 Sum_probs=116.7
Q ss_pred ccHHHHHHHHHHhHhhcC----CCeEEEEEEeCCceEEEEEeCCCCCChhhHHh--------hhcc-CccCCcccccccc
Q psy13669 5 LNLATAVKELVENSLDAG----ATSVEVKLKDYGSELVEVTDNGGGVHEDNYEG--------LTLK-HHTSKLREFTDLT 71 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~----a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~--------~~~~-~~~sk~~~~~~~~ 71 (172)
..+.++|.|||+||+|+. ++.|.|.+..++ .|+|.|||+|||.++++. +|.+ +.++|+.+ +.+
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~--~~~ 106 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ--GAY 106 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG--SSC
T ss_pred chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccC--ccc
Confidence 346789999999999985 889999996443 799999999999998765 7765 45567642 111
Q ss_pred cccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEE-eee---ec-CCCceEEEEcccccCChHhHHHH
Q psy13669 72 SVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKT-KTL---VS-RQVGTTVSLHNIFSTLPVRQKEF 145 (172)
Q Consensus 72 ~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~-~~~---~~-~~~GT~V~i~~lf~~~p~r~~~~ 145 (172)
..+.|++|+||+++..+++ ++|+|+..+ ..|.+.|. .|.... ..+ +. ..+||+|+++ |++.+ |
T Consensus 107 -~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~-~G~~~~~~~~~~~~~~~~~GT~V~f~------Pd~~~-F 175 (390)
T 1kij_A 107 -KVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFS-RGEVTEPLRVVGEAPRGKTGTRVTFK------PDPEI-F 175 (390)
T ss_dssp -CCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEE-TTEEEEEEEEEEECGGGCCEEEEEEE------ECHHH-H
T ss_pred -cccCCCCCcceeeecccccceEEEEecCC--cEEEEEEc-CCcccccceeeccccCCCCCcEEEEE------EChHH-h
Confidence 2356899999999999995 999999755 46899998 666542 222 22 5799999986 77755 6
Q ss_pred hHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 146 HRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 146 ~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
++.+.+++.|.++++++|++||+|+
T Consensus 176 -~~~~~~~~~l~~rl~~~A~lnpgv~ 200 (390)
T 1kij_A 176 -GNLRFDPSKIRARLREVAYLVAGLK 200 (390)
T ss_dssp -TTCCCCHHHHHHHHHHHHHHTTTCE
T ss_pred -CCccccHHHHHHHHHHhcCcCCCcE
Confidence 5566678999999999999999985
No 18
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.85 E-value=3.9e-21 Score=166.59 Aligned_cols=156 Identities=20% Similarity=0.262 Sum_probs=115.1
Q ss_pred ceeccHHHHHHHHHHhHhhcC----------------CC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAG----------------AT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~----------------a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
.+++++..+|+|||+||+||+ +. .|.|.+. .+...|+|.|||+||+.+++...+..+++|+
T Consensus 23 ~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg 101 (559)
T 1y4s_A 23 SLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD-KDKRTLTISDNGVGMTRDEVIDHLGTIAKSG 101 (559)
T ss_dssp HTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEE-TTTTEEEEEECSSCCCHHHHHHHHSCCSCCC
T ss_pred hcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEe-CCCcEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 367889999999999999998 43 5666664 3346899999999999999998888887776
Q ss_pred cccc----cc--cccccccCcccchhccccccc-ceEEEEeecCC--CceEEEEEecCCeEEEeeeecCCCceEEEEccc
Q psy13669 64 LREF----TD--LTSVETFGFRGEALSSLCALS-SVVIVTRHKLS--GVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNI 134 (172)
Q Consensus 64 ~~~~----~~--~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~l 134 (172)
...+ .+ ......+|++|+|++|++.++ +|+|.|++.+. ..++.|..+..+.+........++||+|+|. |
T Consensus 102 ~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~-L 180 (559)
T 1y4s_A 102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH-L 180 (559)
T ss_dssp CCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE-E
T ss_pred cHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCCCCCCeEEEEE-E
Confidence 4432 11 124567899999999999887 59999999873 6678888875555543322256899999997 2
Q ss_pred ccCChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 135 FSTLPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 135 f~~~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
- +.+. +|+ +..+|.+++.+|| +.+|
T Consensus 181 k---~d~~-Efl-----e~~~I~~iv~kys~fi~~P 207 (559)
T 1y4s_A 181 R---EGED-EFL-----DDWRVRSIISKYSDHIALP 207 (559)
T ss_dssp C---TTCG-GGS-----CHHHHHHHHHHHHTTCSSC
T ss_pred c---chhh-hcc-----hHHHHHHHHHHHhccCCCc
Confidence 1 2222 233 2468999999999 8888
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.84 E-value=7.6e-21 Score=149.26 Aligned_cols=151 Identities=22% Similarity=0.278 Sum_probs=102.9
Q ss_pred ceeccHHHHHHHHHHhHhhcCC------------------CeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAGA------------------TSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a------------------~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
+++.++..+|+|||+||+||++ ..|.|.+. .+...|.|.|||+||+++++...|..+++|.
T Consensus 28 ~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d-~~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg 106 (236)
T 2gqp_A 28 SLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD-KEKNLLHVTDTGVGMTREELVKNLGTIAKSG 106 (236)
T ss_dssp HTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHHHCC----
T ss_pred hhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc-CCCCEEEEEECCcCCCHHHHHHHHhhhcccc
Confidence 3678889999999999999976 34666553 3445799999999999999988887776652
Q ss_pred cccc----cc-----cccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEE
Q psy13669 64 LREF----TD-----LTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVS 130 (172)
Q Consensus 64 ~~~~----~~-----~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~ 130 (172)
...+ .+ .......|.+|+|++|++.++ +|+|.|+..+. .++.|..+. |.+..... ....+||+|+
T Consensus 107 ~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~-~~~~w~~~g-g~~~i~~~~~~~~~~~GT~I~ 184 (236)
T 2gqp_A 107 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVIADPRGNTLGRGTTIT 184 (236)
T ss_dssp -----------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEESS-SCEEEEECTTCSCSSSEEEEE
T ss_pred cHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCC-ceEEEEEeC-CEEEEEeccCCCCCCCCeEEE
Confidence 2211 01 023456799999999999998 59999999875 468888764 66543222 1357999999
Q ss_pred EcccccCChHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 131 LHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 131 i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
|. |. +... +|+ +..++.+++++||-
T Consensus 185 l~-Lk---~~~~-~~l-----e~~~i~~lv~~~s~ 209 (236)
T 2gqp_A 185 LV-LK---EEAS-DYL-----ELDTIKNLVKKYSQ 209 (236)
T ss_dssp EE-EC---GGGG-GGG-----CHHHHHHHHHHHHT
T ss_pred EE-EC---Ccch-hhC-----hHHHHHHHHHHHhh
Confidence 96 21 1111 122 34678888888874
No 20
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.84 E-value=3.4e-21 Score=161.20 Aligned_cols=150 Identities=25% Similarity=0.328 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHhHhhc----CCCeEEEEEEeCCceEEEEEeCCCCCChhhH--------Hhhh-ccCccCCccccccccc
Q psy13669 6 NLATAVKELVENSLDA----GATSVEVKLKDYGSELVEVTDNGGGVHEDNY--------EGLT-LKHHTSKLREFTDLTS 72 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da----~a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l--------~~~~-~~~~~sk~~~~~~~~~ 72 (172)
++.+++.|+|+||+|+ .++.|.|.+..++ .|+|.|||.|||.+.. +.+| ..+.++|+++. ..
T Consensus 50 ~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~---~y 124 (408)
T 3lnu_A 50 RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR---NY 124 (408)
T ss_dssp STHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------
T ss_pred CcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC---ce
Confidence 3478999999999998 7899999996544 7999999999999873 4444 66788887642 22
Q ss_pred ccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEE----eeee-cCCCceEEEEcccccCChHhHHHHh
Q psy13669 73 VETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKT----KTLV-SRQVGTTVSLHNIFSTLPVRQKEFH 146 (172)
Q Consensus 73 ~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~----~~~~-~~~~GT~V~i~~lf~~~p~r~~~~~ 146 (172)
..+.|++|+|+++++++| .++|++++++. .|++.|. .|.... ..++ ...+||+|+++ |++.. |
T Consensus 125 kvSgGlhGvG~svVNALS~~l~v~v~rdGk--~~~q~f~-~G~~~~~l~~ig~~~~~~~GT~V~F~------PD~~i-F- 193 (408)
T 3lnu_A 125 TFSGGLHGVGVSVVNALSTKVELFIKREGS--EHRMEFR-DGNAASKLEVVGTVGKKNTGTRLRFW------ADPKY-F- 193 (408)
T ss_dssp ---------CHHHHHHTEEEEEEEEEETTE--EEEEEEE-TTEECSCCEEEEECCTTCCEEEEEEE------ECGGG-S-
T ss_pred eecCCccccccceehhccCeEEEEEEECCE--EEEEEEC-CCEECCCceEeccCcCCCCCcEEEEE------ECHHH-h-
Confidence 356799999999999999 49999998664 4999998 676542 1233 25799999975 66544 5
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 147 RHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 147 ~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
+....+++.|.++|+++|++||+|+
T Consensus 194 ~~~~f~~~~l~~rlrelA~Ln~Gv~ 218 (408)
T 3lnu_A 194 DTPKFNVRALRHLLRAKAVLCPGLT 218 (408)
T ss_dssp SCSCCCHHHHHHHHHHHHHHSTTCE
T ss_pred CCCCcCHHHHHHHHHHHHhhcCCCE
Confidence 4556788999999999999999985
No 21
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.83 E-value=4.8e-21 Score=167.80 Aligned_cols=156 Identities=20% Similarity=0.262 Sum_probs=112.1
Q ss_pred ceeccHHHHHHHHHHhHhhcC----------------CC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAG----------------AT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~----------------a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
.+++++..+|+|||+||+||+ +. .|.|.+. .+...|+|.|||+||+.+++...+..+++|+
T Consensus 23 ~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d-~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg 101 (624)
T 2ioq_A 23 SLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD-KDKRTLTISDNGVGMTRDEVIDHLGTIAKSG 101 (624)
T ss_dssp HHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHHHHHCC--
T ss_pred hcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEe-CCCcEEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 356888999999999999997 44 4666663 3346899999999999999988777777765
Q ss_pred cccc----cc--cccccccCcccchhccccccc-ceEEEEeecC--CCceEEEEEecCCeEEEeeeecCCCceEEEEccc
Q psy13669 64 LREF----TD--LTSVETFGFRGEALSSLCALS-SVVIVTRHKL--SGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNI 134 (172)
Q Consensus 64 ~~~~----~~--~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~i~~l 134 (172)
...+ .+ ......+|++|+|++|++.++ +|+|.|++.+ ...+|.|..+.++.+.........+||+|++. |
T Consensus 102 ~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~-L 180 (624)
T 2ioq_A 102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH-L 180 (624)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEECCSSSEEEEEEE-E
T ss_pred cHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEEECCCCCCCeEEEEE-E
Confidence 4322 11 234567899999999999998 6999999987 46678888875555443322256899999997 2
Q ss_pred ccCChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 135 FSTLPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 135 f~~~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
. +.+ .+|+ +..+|.+++.+|| +.+|
T Consensus 181 k---~d~-~Efl-----~~~~i~~ivkkys~fi~~P 207 (624)
T 2ioq_A 181 R---EGE-DEFL-----DDWRVRSIISKYSDHIALP 207 (624)
T ss_dssp C---TTC-GGGG-----CHHHHHHHHHHHHTTCSSC
T ss_pred c---chh-hhcc-----hHHHHHHHHHHHhccCCCc
Confidence 1 122 1233 2468999999999 8888
No 22
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.82 E-value=1e-20 Score=150.91 Aligned_cols=150 Identities=23% Similarity=0.301 Sum_probs=104.2
Q ss_pred eeccHHHHHHHHHHhHhhcCC----------------C--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 3 VVLNLATAVKELVENSLDAGA----------------T--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a----------------~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++...+|+|||+||+||.+ . .|.|.. +.+...|+|.|||+||+.+++...+..++.|..
T Consensus 25 lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~-d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgt 103 (269)
T 1qy5_A 25 LYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC-DKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 103 (269)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE-cCCceEEEEEECCCCCCHHHHHHHhhhhccccc
Confidence 567788999999999999975 3 355544 345568999999999999999887766655421
Q ss_pred ccc----ccc-----ccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEEE
Q psy13669 65 REF----TDL-----TSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVSL 131 (172)
Q Consensus 65 ~~~----~~~-----~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~i 131 (172)
..+ ... .....+|.+|+|++|++.++ +|+|.|++.+. .+|.|..+. |.+..... ....+||+|+|
T Consensus 104 k~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~-~~~~w~s~g-g~~~i~~~~~~~~~~~GT~I~L 181 (269)
T 1qy5_A 104 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVIADPRGNTLGRGTTITL 181 (269)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECS-SCEEEEECTTCSCSSSEEEEEE
T ss_pred HHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCC-cEEEEEEeC-CEEEEEeccCCCcCCCCeEEEE
Confidence 110 000 23356799999999999998 49999999864 468888764 66643322 23579999999
Q ss_pred cccccCChHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 132 HNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 132 ~~lf~~~p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
. ++....+|+ +..+|.+++..|+-
T Consensus 182 ~-----Lk~d~~e~l-----e~~~i~~lvkkys~ 205 (269)
T 1qy5_A 182 V-----LKEEASDYL-----ELDTIKNLVKKYSQ 205 (269)
T ss_dssp E-----ECGGGGGGG-----SHHHHHHHHHTTCT
T ss_pred E-----Ecccchhhh-----hHHHHHHHHHhhhc
Confidence 6 122112232 23578889999883
No 23
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.82 E-value=2.1e-20 Score=143.07 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHhHhhc---C-CCeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccc
Q psy13669 6 NLATAVKELVENSLDA---G-ATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGE 81 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da---~-a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~ 81 (172)
.+.+++.|||+||+|+ + ++.|.|.+..++ .|+|.|||.|||.+ .+.++|....+.. ++
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~-------~h~~~~~~~~e~i-----~t---- 92 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD-------IQEKMGRPAVEVI-----LT---- 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS-------BCTTTSSBHHHHH-----HH----
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc-------ccCcCCCcccccc-----ce----
Confidence 4788999999999994 6 899999997544 89999999999986 3444554332221 11
Q ss_pred hhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEe---eeecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHH
Q psy13669 82 ALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTK---TLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMT 157 (172)
Q Consensus 82 gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~ 157 (172)
+++++++| .++|++++++. .|++.|. .|..... .+...++||+|+++ |++.+ |+++.+.+++.|.
T Consensus 93 -~SvVNALS~~l~v~v~r~g~--~~~~~f~-~G~~~~~l~~i~~~~~~GT~V~F~------Pd~~i-F~~~~~~~~~~l~ 161 (198)
T 3ttz_A 93 -SSVVNALSQDLEVYVHRNET--IYHQAYK-KGVPQFDLKEVGTTDKTGTVIRFK------ADGEI-FTETTVYNYETLQ 161 (198)
T ss_dssp -TCHHHHTEEEEEEEEEETTE--EEEEEEE-TTEESSCCEEEEECSCCEEEEEEE------ECTTT-CCSCCCCCHHHHH
T ss_pred -eEehhhhcCeEEEEEEECCc--EEEEEEe-CCEECCCceeccCCCCCCcEEEEE------ECHHH-hccCCccCHHHHH
Confidence 77788887 59999988764 5999998 6766421 23356899999986 66655 6466677889999
Q ss_pred HHHHHhhhhcCCCC
Q psy13669 158 QVLYGYCLVALGVK 171 (172)
Q Consensus 158 ~~l~~~a~~~p~i~ 171 (172)
++++++|++||+|+
T Consensus 162 ~rlrelA~ln~gv~ 175 (198)
T 3ttz_A 162 QRIRELAFLNKGIQ 175 (198)
T ss_dssp HHHHHHHHHSTTCE
T ss_pred HHHHHHhhcCCCCE
Confidence 99999999999985
No 24
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.80 E-value=8.4e-20 Score=142.96 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=102.1
Q ss_pred ceeccHHHHHHHHHHhHhhcCCC------------------eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAGAT------------------SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~a~------------------~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
.++++...+|+|||+||.||.+. .|.|.. +.....|+|.|||+||+++++...+...+.|.
T Consensus 35 ~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~-d~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sg 113 (239)
T 3nmq_A 35 TFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP-NPQERTLTLVDTGIGMTKADLINNLGTIAKSG 113 (239)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHTHHHHHHHHH
T ss_pred hccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE-eCCccEEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 46778889999999999999532 345544 33456899999999999999865443333221
Q ss_pred ccc----ccccccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee--ecCCCceEEEEccccc
Q psy13669 64 LRE----FTDLTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL--VSRQVGTTVSLHNIFS 136 (172)
Q Consensus 64 ~~~----~~~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~GT~V~i~~lf~ 136 (172)
... ..+...+...|.+|+|++|++.++ +|+|.|++.+ ..+|.|..+.+|.+..... .+..+||+|++. | .
T Consensus 114 tk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~-~~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~-l-k 190 (239)
T 3nmq_A 114 TKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHND-DEQYAWESSAGGSFTVRADHGEPIGRGTKVILH-L-K 190 (239)
T ss_dssp HHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSTTEEEEEECCSSCCSSEEEEEEE-E-C
T ss_pred chhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCC-CceeEEEECCCCcEEEEecCCCcCCCCCEEEEE-E-C
Confidence 111 001123567899999999999998 4999999865 3468888876676653322 245899999986 1 1
Q ss_pred CChHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 137 TLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 137 ~~p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
+.. .+|+ +-.++.+++..|+-
T Consensus 191 --~d~-~e~l-----~~~~i~~lv~kys~ 211 (239)
T 3nmq_A 191 --EDQ-TEYL-----EERRVKEVVKKHSQ 211 (239)
T ss_dssp --GGG-GGGG-----SHHHHHHHHHHHCT
T ss_pred --CCh-HHhc-----CHHHHHHHHHHHHh
Confidence 111 1132 22467778888864
No 25
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.80 E-value=2e-19 Score=143.53 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=103.4
Q ss_pred eeccHHHHHHHHHHhHhhcCC------------------CeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 3 VVLNLATAVKELVENSLDAGA------------------TSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a------------------~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++...+|+|||+||.||.+ -.|.|.. +.....|+|.|||+||+.+++...+...+.|..
T Consensus 43 lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~-d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgt 121 (281)
T 3peh_A 43 LYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA-NKEKNILSITDTGIGMTKVDLINNLGTIAKSGT 121 (281)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCH
T ss_pred ccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE-cCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhh
Confidence 567788899999999999963 2455555 334467999999999999998865544433321
Q ss_pred ccc----cc-cccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEEEcccc
Q psy13669 65 REF----TD-LTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVSLHNIF 135 (172)
Q Consensus 65 ~~~----~~-~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~i~~lf 135 (172)
..+ .+ ......+|.+|+|++|++.++. |+|.|++.+. .+|.|..+..|.+..... ....+||+|+|.=
T Consensus 122 k~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~L-- 198 (281)
T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPRGATLKRGTRISLHL-- 198 (281)
T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTTCSTTSSEEEEEEEE--
T ss_pred hhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCCCCCCCCCeEEEEEE--
Confidence 110 00 1234678999999999999874 9999999764 578888876666553322 2468999999861
Q ss_pred cCChHhHHHHhHhHHHHHHHHHHHHHHhhhh
Q psy13669 136 STLPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166 (172)
Q Consensus 136 ~~~p~r~~~~~~~~~~~~~~i~~~l~~~a~~ 166 (172)
. +.. .+|+ +-.++.+++..|+-.
T Consensus 199 k--ed~-~e~l-----e~~~ik~ivkkys~f 221 (281)
T 3peh_A 199 K--EDA-TNLL-----NDKKLMDLISKYSQF 221 (281)
T ss_dssp C--GGG-GGGG-----SHHHHHHHHHHHTTT
T ss_pred C--Cch-hhhc-----CHHHHHHHHHHhhcc
Confidence 1 111 1122 225777888888743
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.79 E-value=1.8e-18 Score=147.76 Aligned_cols=148 Identities=22% Similarity=0.202 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEe-C---CceEEEEEeCCCCCChhhHHhhhccC-ccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKD-Y---GSELVEVTDNGGGVHEDNYEGLTLKH-HTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~-~---~~~~i~V~DnG~Gi~~~~l~~~~~~~-~~sk~~~~~~~~~~~~ 75 (172)
.+.++|.|||+||+||.+. .|.|.+.. + +...|+|.|||+||++++++.+|.+| .++|.. ....
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~~ 105 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQT 105 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC------CSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc------cccC
Confidence 4789999999999999876 78888864 2 57789999999999999999999998 455542 1234
Q ss_pred cCcccchhcccccccc------eEEEEeecCCCceEEEEEe--c---CCeEEEeeee---cCCCceEEEEcccccCChHh
Q psy13669 76 FGFRGEALSSLCALSS------VVIVTRHKLSGVGHWLEFD--H---HGHIKTKTLV---SRQVGTTVSLHNIFSTLPVR 141 (172)
Q Consensus 76 ~G~~G~gl~s~~~~~~------v~i~T~~~~~~~~~~~~~~--~---~g~~~~~~~~---~~~~GT~V~i~~lf~~~p~r 141 (172)
.|.+|+||+.+..+++ ++|.|+..+....+.+.+. . .+......+. ...+||+|+|. +..+++
T Consensus 106 ~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-l~~~~~-- 182 (471)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-IPGDWP-- 182 (471)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEE-EECCHH--
T ss_pred CCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEE-EcCCcc--
Confidence 5778999998777764 9999988665434555543 1 2333333333 45799999998 322221
Q ss_pred HHHHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 142 QKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.....+.++++++|+.||+++
T Consensus 183 ---------e~~~~I~~~l~~~al~~p~v~ 203 (471)
T 1mu5_A 183 ---------KAKSRIYEYIKRTYIITPYAE 203 (471)
T ss_dssp ---------HHHHHHHHHHHHHHHHCTTCE
T ss_pred ---------hHHHHHHHHHHHHHhHCCCeE
Confidence 123588899999999999975
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.77 E-value=2.8e-18 Score=148.26 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEe-C---CceEEEEEeCCCCCChhhHHhhhccC-ccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKD-Y---GSELVEVTDNGGGVHEDNYEGLTLKH-HTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~-~---~~~~i~V~DnG~Gi~~~~l~~~~~~~-~~sk~~~~~~~~~~~~ 75 (172)
.+.++|.|||+||+||.+. .|.|.+.. + +...|+|.|||+||++++++.+|.+| .++|.. ....
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~~ 104 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQT 104 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------cccC
Confidence 4789999999999999876 78888864 2 57789999999999999999999998 455542 1234
Q ss_pred cCcccchhcccccccc------eEEEEeecCCCceEEEEEe--c---CCeEEEeeeec---CCCceEEEEcccccCChHh
Q psy13669 76 FGFRGEALSSLCALSS------VVIVTRHKLSGVGHWLEFD--H---HGHIKTKTLVS---RQVGTTVSLHNIFSTLPVR 141 (172)
Q Consensus 76 ~G~~G~gl~s~~~~~~------v~i~T~~~~~~~~~~~~~~--~---~g~~~~~~~~~---~~~GT~V~i~~lf~~~p~r 141 (172)
.|.+|+||+.+..+++ ++|.|+..+....+.+.+. . .+......+.. ..+||+|++. |..++.
T Consensus 105 ~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-l~~~~~-- 181 (530)
T 2zbk_B 105 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-IPGDWP-- 181 (530)
T ss_dssp SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEE-EECCHH--
T ss_pred CCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEE-eccchh--
Confidence 5788999988777665 9999987665434554433 1 23333333332 5799999998 322211
Q ss_pred HHHHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 142 QKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.....+.++++++|+.||+++
T Consensus 182 ---------e~~~~i~~~l~~~Al~~p~v~ 202 (530)
T 2zbk_B 182 ---------KAKSRIYEYIKRTYIITPYAE 202 (530)
T ss_dssp ---------HHHHHHHHHHHHHHHHCTTCC
T ss_pred ---------hHHHHHHHHHHHHHHHCCCcE
Confidence 113688999999999999985
No 28
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.76 E-value=7e-19 Score=154.81 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=98.7
Q ss_pred ceeccHHHHHHHHHHhHhhcC----------------CC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCC
Q psy13669 2 AVVLNLATAVKELVENSLDAG----------------AT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSK 63 (172)
Q Consensus 2 ~~i~~~~~~l~eLi~Na~da~----------------a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk 63 (172)
.+++++..+|+|||+||+||. +. .|.|.+. .+...|+|.|||+||+.+++...+..+++|.
T Consensus 41 sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d-~~~~~I~I~DnGiGMt~edl~~~l~tIA~SG 119 (666)
T 2o1u_A 41 SLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD-KEKNLLHVTDTGVGMTREELVKNLGTIAKSG 119 (666)
T ss_dssp TTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHTTC-----
T ss_pred hccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEe-CCCCEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 367788999999999999997 54 4555553 3446799999999999999998777766662
Q ss_pred cccc----ccc-----ccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeeee---cCCCceEEE
Q psy13669 64 LREF----TDL-----TSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTLV---SRQVGTTVS 130 (172)
Q Consensus 64 ~~~~----~~~-----~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~GT~V~ 130 (172)
...+ .+. .....+|.+|+|++|++.++ +|+|.|++.+. .+|.|..+. |.+...... ..++||+|+
T Consensus 120 tk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~-~~~~W~s~g-g~~ti~~~~~~~~~~~GT~I~ 197 (666)
T 2o1u_A 120 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDS-NEFSVIADPRGNTLGRGTTIT 197 (666)
T ss_dssp --------------------------CTTGGGGGTEEEEEEEEECTTS-CCEEEEESS-SCCEEEECTTCCSSSSEEEEE
T ss_pred cHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCC-ceEEEEEeC-CeEEEEecccCCCCCCCeEEE
Confidence 2111 110 23456899999999988887 59999999875 478888874 666432221 358999999
Q ss_pred EcccccCChHhHHHHhHhHHHHHHHHHHHHHHhh--hhcC
Q psy13669 131 LHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYC--LVAL 168 (172)
Q Consensus 131 i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l~~~a--~~~p 168 (172)
+. | . +.. .+|+ +..+|.+++.+|| +.+|
T Consensus 198 L~-L-k--~d~-~Efl-----e~~~I~~ivkkys~fi~~P 227 (666)
T 2o1u_A 198 LV-L-K--EEA-SDYL-----ELDTIKNLVKKYSQFINFP 227 (666)
T ss_dssp EE-E-C--TTT-TTSS-----STTHHHHHHHHHSTTCCSC
T ss_pred EE-E-c--cch-hhhc-----cHHHHHHHHHHHHhhCCCc
Confidence 96 1 1 111 1122 2458899999999 8877
No 29
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.7e-18 Score=148.69 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=106.1
Q ss_pred eeccHHHHHHHHHHhHhhcCC------------------CeEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 3 VVLNLATAVKELVENSLDAGA------------------TSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 3 ~i~~~~~~l~eLi~Na~da~a------------------~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
++++...+|+|||+||+||.+ ..|.|.+.. +...|+|.|||+||+.+++...+...++|..
T Consensus 23 LYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~-~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt 101 (677)
T 2cg9_A 23 VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP-EQKVLEIRDSGIGMTKAELINNLGTIAKSGT 101 (677)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG-GGTEEEEEECSCCCCHHHHHGGGSSSSSCTT
T ss_pred CCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC-CCCEEEEEECCCCCCHHHHHHHHHhHhcccc
Confidence 577889999999999999973 246666643 3457999999999999999988877666522
Q ss_pred ccc----cccccccccCcccchhccccccc-ceEEEEeecCCCceEEEEEecCCeEEEeee---ecCCCceEEEEccccc
Q psy13669 65 REF----TDLTSVETFGFRGEALSSLCALS-SVVIVTRHKLSGVGHWLEFDHHGHIKTKTL---VSRQVGTTVSLHNIFS 136 (172)
Q Consensus 65 ~~~----~~~~~~~~~G~~G~gl~s~~~~~-~v~i~T~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~i~~lf~ 136 (172)
..+ .+......+|.+|+|++|.+.++ +|+|.|++.+. .+|.|..+.++.+..... ....+||+|++. |..
T Consensus 102 ~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~-Lk~ 179 (677)
T 2cg9_A 102 KAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-LKD 179 (677)
T ss_dssp HHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEECCSSCCCSSEEEEEEE-ECT
T ss_pred HHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeecCCCCCCCCCeEEEEE-Ecc
Confidence 111 11123457899999999888777 59999999874 478888875555543331 356899999997 211
Q ss_pred CChHhHHHHhHhHHHHHHHHHHHHHHhhhh
Q psy13669 137 TLPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166 (172)
Q Consensus 137 ~~p~r~~~~~~~~~~~~~~i~~~l~~~a~~ 166 (172)
...+|+ +..++.+++.+||-.
T Consensus 180 ----d~~e~l-----~~~~i~~lvkkys~f 200 (677)
T 2cg9_A 180 ----DQLEYL-----EEKRIKEVIKRHSEF 200 (677)
T ss_dssp ----TGGGGG-----CHHHHHHHHHHHSTT
T ss_pred ----hhhccc-----cHHHHHHHHHHHHhh
Confidence 111122 235777788877643
No 30
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.74 E-value=4.4e-18 Score=143.11 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=110.8
Q ss_pred eccHHHHHHHHHHhHhhcC-----CCeEEEEEEeCCceEEEEEeCCCCCChhhHH--------hh-hccCccCCcccccc
Q psy13669 4 VLNLATAVKELVENSLDAG-----ATSVEVKLKDYGSELVEVTDNGGGVHEDNYE--------GL-TLKHHTSKLREFTD 69 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~-----a~~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~-~~~~~~sk~~~~~~ 69 (172)
++.+.+++.|+|+||+|+. ++.|.|.++.++ .+|+|.|||.|||.+..+ .+ ...++++|+++.
T Consensus 62 ~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~-- 138 (418)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD-- 138 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT--
T ss_pred cchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC--
Confidence 3578899999999999975 789999996442 379999999999987643 23 345778887542
Q ss_pred cccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecC-CeEEEe--eeec-CCCceEEEEcccccCChHhHHH
Q psy13669 70 LTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHH-GHIKTK--TLVS-RQVGTTVSLHNIFSTLPVRQKE 144 (172)
Q Consensus 70 ~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~-g~~~~~--~~~~-~~~GT~V~i~~lf~~~p~r~~~ 144 (172)
....+-|++|+|.+.+.++|+ ++|+++.......|++.|... +....+ .+.. ..+||+|++. |+...
T Consensus 139 -~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~------PD~~i- 210 (418)
T 1pvg_A 139 -EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTR- 210 (418)
T ss_dssp -SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECGGG-
T ss_pred -ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeecccCCCCCceEEEEE------EChHH-
Confidence 123456999999999999995 999998633334589999833 133221 1222 4699999975 44332
Q ss_pred HhHhHHHHHHH---HHHHHHHhhhhcCCCC
Q psy13669 145 FHRHLKKEFAK---MTQVLYGYCLVALGVK 171 (172)
Q Consensus 145 ~~~~~~~~~~~---i~~~l~~~a~~~p~i~ 171 (172)
| .....+++. |.++++.+|++||+++
T Consensus 211 F-~~~~f~~d~l~~l~~RlrelA~Ln~Gl~ 239 (418)
T 1pvg_A 211 F-GMKELDNDILGVMRRRVYDINGSVRDIN 239 (418)
T ss_dssp G-TCSSCCHHHHHHHHHHHHHHHHHSTTCE
T ss_pred c-CCcccCHHHHHHHHHHHHHHHhcCCCCE
Confidence 4 222333444 7899999999999985
No 31
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=5.7e-18 Score=133.16 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=85.0
Q ss_pred EEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccc----c-ccccccccCcccchhcccccccc-eEEEEeec
Q psy13669 26 VEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREF----T-DLTSVETFGFRGEALSSLCALSS-VVIVTRHK 99 (172)
Q Consensus 26 i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~----~-~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~ 99 (172)
|.|.+ +.....|+|.|||+||+.+++...+...+.|....+ . +......+|.+|+|++|++.+++ |+|.|+
T Consensus 121 I~I~~-Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk-- 197 (272)
T 3ied_A 121 IKIKP-DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK-- 197 (272)
T ss_dssp EEEEE-ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE--
T ss_pred EEEEE-eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc--
Confidence 55555 344557999999999999999986655544421111 0 11235678999999999999884 999999
Q ss_pred CCCceEEEEEecCCeEEEeee--------ecCCCceEEEEcccccCChHhHHHHhHhHHHHHHHHHHHHHHhhh
Q psy13669 100 LSGVGHWLEFDHHGHIKTKTL--------VSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165 (172)
Q Consensus 100 ~~~~~~~~~~~~~g~~~~~~~--------~~~~~GT~V~i~~lf~~~p~r~~~~~~~~~~~~~~i~~~l~~~a~ 165 (172)
+...+|.|..+.+|.+..... ...+.||+|++. | -+.. .+|+ +-.++.+++..|+-
T Consensus 198 ~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~-L---ked~-~e~l-----e~~~ik~likkys~ 261 (272)
T 3ied_A 198 KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH-L---KEEC-DEYL-----EDYKLKELIKKYSE 261 (272)
T ss_dssp SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE-E---CGGG-GGGG-----SHHHHHHHHHHHCT
T ss_pred CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE-E---CCCh-HHhc-----CHHHHHHHHHHHHh
Confidence 345679999887777654322 146899999986 1 1111 1233 22477888888873
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.73 E-value=3.8e-18 Score=149.51 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEEeC--CceEEEEEeCCCCCChhhHHhhhccCc-cCCcccccccccccccC
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLKDY--GSELVEVTDNGGGVHEDNYEGLTLKHH-TSKLREFTDLTSVETFG 77 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~~~--~~~~i~V~DnG~Gi~~~~l~~~~~~~~-~sk~~~~~~~~~~~~~G 77 (172)
.+.+++.|||+||+||.+. .|.|.+... +...|+|.|||+||++++++.+|.+++ ++++... ..+.|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~-----~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHAL-----KQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCC-----C-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccc-----cccCC
Confidence 5789999999999999765 788887643 457899999999999999999999874 4555431 13458
Q ss_pred cccchhcccccccc------eEEEEeecCCCceEEEEE----ecC-CeE--EEeeeecCCCceEEEEcccccCChHhHHH
Q psy13669 78 FRGEALSSLCALSS------VVIVTRHKLSGVGHWLEF----DHH-GHI--KTKTLVSRQVGTTVSLHNIFSTLPVRQKE 144 (172)
Q Consensus 78 ~~G~gl~s~~~~~~------v~i~T~~~~~~~~~~~~~----~~~-g~~--~~~~~~~~~~GT~V~i~~lf~~~p~r~~~ 144 (172)
.+|+||+++..+++ +++.|+..+...++.+.+ ..+ +.. ....+....+||+|++. +..+++..
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~-f~~~~~~~--- 187 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE-MRAAYVKG--- 187 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE-CSCCCCCC---
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE-ecCccchH---
Confidence 89999998887774 389998876556788887 311 122 12233446799999998 32222211
Q ss_pred HhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 145 FHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 145 ~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
.++.+.++++++|++||+++
T Consensus 188 -------~~~~I~~~L~~lAllnpgv~ 207 (621)
T 2q2e_B 188 -------RRQSIYEYLKATAIVNPHAR 207 (621)
T ss_dssp -------SSSSSHHHHHHHHHHCCSCE
T ss_pred -------HHHHHHHHHHHHHhhCCCCE
Confidence 02568889999999999985
No 33
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.1e-12 Score=121.94 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=104.7
Q ss_pred eccHHHHHHHHHHhHhhc---C--CCeEEEEEEe-CCceEEEEEeCCCCCChhh--------HHhhh-ccCccCCccccc
Q psy13669 4 VLNLATAVKELVENSLDA---G--ATSVEVKLKD-YGSELVEVTDNGGGVHEDN--------YEGLT-LKHHTSKLREFT 68 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da---~--a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~--------l~~~~-~~~~~sk~~~~~ 68 (172)
++-+.+++.|+|+||+|. + .+.|.|.++. ++ +|+|.|||.|||-+. ++.+| ..++.+|+++.
T Consensus 57 v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~- 133 (1177)
T 4gfh_A 57 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD- 133 (1177)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS-
T ss_pred cceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC-
Confidence 457889999999999993 3 4679999963 44 799999999999753 23344 34677787642
Q ss_pred ccccccccCcccchhcccccccc-eEEEEeecCCCceEEEEEecCCeEEEe---ee-ecCCCceEEEEcccccCChHhHH
Q psy13669 69 DLTSVETFGFRGEALSSLCALSS-VVIVTRHKLSGVGHWLEFDHHGHIKTK---TL-VSRQVGTTVSLHNIFSTLPVRQK 143 (172)
Q Consensus 69 ~~~~~~~~G~~G~gl~s~~~~~~-v~i~T~~~~~~~~~~~~~~~~g~~~~~---~~-~~~~~GT~V~i~~lf~~~p~r~~ 143 (172)
....+-|.+|+|...+.++|+ +.+++........|...|.++...... .. ....+||+|++. |+...
T Consensus 134 --~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~------PD~~i 205 (1177)
T 4gfh_A 134 --EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTR 205 (1177)
T ss_dssp --SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEE------ECHHH
T ss_pred --CCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEE------eCHHh
Confidence 122456999999999999985 777776443445688999843333211 12 245689999965 44332
Q ss_pred HHhHhHHHHHHHHHHHHHHhhhhcCCCC
Q psy13669 144 EFHRHLKKEFAKMTQVLYGYCLVALGVK 171 (172)
Q Consensus 144 ~~~~~~~~~~~~i~~~l~~~a~~~p~i~ 171 (172)
| ......++.+..++++++.++++++
T Consensus 206 -F-~~~~~~~d~l~~~~r~~~~l~~~~~ 231 (1177)
T 4gfh_A 206 -F-GMKELDNDILGVMRRRVYDINGSVR 231 (1177)
T ss_dssp -H-TCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred -c-CCcEeCHHHHHHHHHHHHHhcCCCc
Confidence 4 3333455677777888887776543
No 34
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.34 E-value=2.4e-12 Score=100.38 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhHhhcCCC-----eEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcc
Q psy13669 6 NLATAVKELVENSLDAGAT-----SVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFR 79 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~-----~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~ 79 (172)
.+.+++.|||+||++|... .|.|.+. ..+...|.|.|||+||++++++.+|++|++.+.... ....| .
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-----~~~~G-~ 211 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT-----YEVPG-T 211 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------C
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCC-----CCCCC-c
Confidence 3788999999999998642 4777765 356788999999999999999999999987654211 01124 4
Q ss_pred cchhcccccc
Q psy13669 80 GEALSSLCAL 89 (172)
Q Consensus 80 G~gl~s~~~~ 89 (172)
|+||+.+..+
T Consensus 212 GLGL~i~~~i 221 (258)
T 2c2a_A 212 GLGLAITKEI 221 (258)
T ss_dssp CCTHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8898865554
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.34 E-value=4e-12 Score=91.26 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHhHhhcCCCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 6 NLATAVKELVENSLDAGATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
.+.+++.|||+||++|....|.|.+.. .+...|.|.|||+||++++++.+|++|++.+... +..|+||+
T Consensus 44 ~l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~----------~g~GlGL~ 113 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----------PGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----------TTCCSCHH
T ss_pred HHHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC----------CCcccCHH
Confidence 367899999999999988788888764 5678899999999999999999999998765321 23488887
Q ss_pred ccccc
Q psy13669 85 SLCAL 89 (172)
Q Consensus 85 s~~~~ 89 (172)
.+..+
T Consensus 114 i~~~~ 118 (152)
T 1id0_A 114 VAREI 118 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.31 E-value=5e-12 Score=91.90 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHhHhhcCCCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 6 NLATAVKELVENSLDAGATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
.+.+++.|||+||+++....|.|.+. +.+...|.|.|||+||++++++.+|++|++++... .. +..|+||+
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-------~~-~g~GlGL~ 118 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-------TI-SGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-------CC-CCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-------CC-CCcccCHH
Confidence 47789999999999999888888885 35678899999999999999999999998876422 11 23488887
Q ss_pred ccccc
Q psy13669 85 SLCAL 89 (172)
Q Consensus 85 s~~~~ 89 (172)
.+..+
T Consensus 119 i~~~~ 123 (161)
T 1bxd_A 119 IVQRI 123 (161)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 65554
No 37
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.27 E-value=1.4e-11 Score=88.44 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
.+.+++.||++||++|.. ..|.|.+. ..+...|.|.|||+||++++++.+|++|+++.... . +..|+||
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~--------~-~g~GlGL 116 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS--------H-SGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CCC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC--------C-CCCCcCH
Confidence 467899999999999864 36777665 35678899999999999999999999998653211 1 2348888
Q ss_pred ccccccc
Q psy13669 84 SSLCALS 90 (172)
Q Consensus 84 ~s~~~~~ 90 (172)
+.+..+.
T Consensus 117 ~i~~~~~ 123 (150)
T 1ysr_A 117 ALVAQQA 123 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655543
No 38
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.22 E-value=1.6e-11 Score=91.64 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhHhhcC--------------CCeEEEEEE-eCCceEEEEEeCCCCCChhhH-------------------
Q psy13669 7 LATAVKELVENSLDAG--------------ATSVEVKLK-DYGSELVEVTDNGGGVHEDNY------------------- 52 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~--------------a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l------------------- 52 (172)
+.+++.|||.||++|. ...|.|.+. ..+...|.|.|||+||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 4566999999999985 346777775 366789999999999999987
Q ss_pred -----HhhhccCccCCcccccccccccccCcccchhccccccc
Q psy13669 53 -----EGLTLKHHTSKLREFTDLTSVETFGFRGEALSSLCALS 90 (172)
Q Consensus 53 -----~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~~ 90 (172)
+.+|++|++++.... ..+..|+||+.+..+.
T Consensus 128 ~~~~~~~if~~~~~~~~~~~-------~~~g~GlGL~iv~~~~ 163 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKVS-------EVSGRGVGMDVVKNVV 163 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHHH-------GGGTCCCHHHHHHHHH
T ss_pred hhhhHHHhcCCcccccccCC-------CCCCCccCHHHHHHHH
Confidence 788999887654211 1123488987665543
No 39
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.22 E-value=8.4e-11 Score=84.20 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHhHhhcC-----CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCc
Q psy13669 5 LNLATAVKELVENSLDAG-----ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGF 78 (172)
Q Consensus 5 ~~~~~~l~eLi~Na~da~-----a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~ 78 (172)
..+..++.||+.||++|+ ...|.|.+. ..+...|.|.|||+||+ +++.+|.+|++++... +.
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~----------~~ 105 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPEL----------ER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCCC----------CC
Confidence 357889999999999987 357888775 36678999999999999 7888999988765411 23
Q ss_pred ccchhccccccc
Q psy13669 79 RGEALSSLCALS 90 (172)
Q Consensus 79 ~G~gl~s~~~~~ 90 (172)
.|+||+.+..+.
T Consensus 106 ~GlGL~iv~~~~ 117 (145)
T 1th8_A 106 SGMGFTIMENFM 117 (145)
T ss_dssp CSCHHHHHHHHS
T ss_pred CcchHHHHHHHH
Confidence 488988776665
No 40
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.22 E-value=3.9e-11 Score=91.98 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhHhhcC--CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAG--ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~--a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||+.||++|. ...|.|.+. +.+...|.|.|||+||++++++.+|++|++++.. .| .|+|
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----------~g-~GlG 191 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV----------KG-TGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----------GC-CSCH
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC----------CC-cchh
Confidence 46789999999999996 346777765 4677899999999999999999999999876521 13 3888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 192 L~i~~~i 198 (244)
T 3d36_A 192 MMVVYRI 198 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765554
No 41
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.21 E-value=2.4e-11 Score=101.56 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHhHhhcCCC---------eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGAT---------SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~---------~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 75 (172)
.+.+++.|||+||++|... .|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++++.....+......
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 4678999999999998532 58888864 5678899999999999999999999998876531000001112
Q ss_pred cCcccchhcccccc
Q psy13669 76 FGFRGEALSSLCAL 89 (172)
Q Consensus 76 ~G~~G~gl~s~~~~ 89 (172)
.+..|+||+-+..+
T Consensus 323 ~~G~GLGL~Ivr~i 336 (407)
T 2q8g_A 323 LAGFGYGLPISRLY 336 (407)
T ss_dssp SSCTTCHHHHHHHH
T ss_pred CCCcCCCHHHHHHH
Confidence 23448898765444
No 42
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.20 E-value=1.2e-11 Score=93.56 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHhhcCCC--eEEEEEEeCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchhc
Q psy13669 7 LATAVKELVENSLDAGAT--SVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS 84 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~--~i~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~ 84 (172)
+.+++.|||.||++|... .|.|.+... .|.|.|||+||++++++.+|++|++++... . +..|+||+
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~---~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~--------~-~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNAD---NFIVRDNGPGVTPEALARIGERFYRPPGQT--------A-TGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSS---EEEEECSCC-----------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccC---eEEEEECCCCCCHHHHHHHHhhhccCCCCC--------C-CcccccHH
Confidence 678999999999999744 466666332 299999999999999999999998754221 1 23488888
Q ss_pred cccccc
Q psy13669 85 SLCALS 90 (172)
Q Consensus 85 s~~~~~ 90 (172)
.+..+.
T Consensus 186 i~~~i~ 191 (222)
T 3jz3_A 186 IVQRIA 191 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 43
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.20 E-value=3.3e-11 Score=86.15 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHhHhhcC--CCeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAG--ATSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~--a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||++||++|. ...|.|.+.. .+...|.|.|||+||++++++.+|++|++++.. | .|+|
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~-----------g-~GlG 114 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----------G-TGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------------C-CCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC-----------C-CCcC
Confidence 46789999999999986 4578887754 567889999999999999999999999875421 2 3888
Q ss_pred hcccccc
Q psy13669 83 LSSLCAL 89 (172)
Q Consensus 83 l~s~~~~ 89 (172)
|+.+..+
T Consensus 115 L~i~~~~ 121 (152)
T 3a0y_A 115 LSICRKI 121 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765443
No 44
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.18 E-value=2.3e-11 Score=102.06 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHhHhhcCCC----------eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccc-cccccc
Q psy13669 6 NLATAVKELVENSLDAGAT----------SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREF-TDLTSV 73 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~----------~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~-~~~~~~ 73 (172)
.+.+++.|||+||++|... .|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++++.... ++....
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~ 332 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA 332 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCC
Confidence 3688999999999998532 58888864 46789999999999999999999999988764310 000111
Q ss_pred cccCcccchhcccccc
Q psy13669 74 ETFGFRGEALSSLCAL 89 (172)
Q Consensus 74 ~~~G~~G~gl~s~~~~ 89 (172)
...| .|+||+-+..+
T Consensus 333 ~~~G-~GLGL~I~k~i 347 (419)
T 1y8o_A 333 PLAG-FGYGLPISRLY 347 (419)
T ss_dssp CC---CTTHHHHHHHH
T ss_pred CcCC-eecCHHHHHHH
Confidence 1224 48888765444
No 45
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.18 E-value=2.9e-11 Score=100.65 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHhHhhcCCC---------eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGAT---------SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~---------~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 75 (172)
.+.+++.|||+||++|... .|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++++.....+......
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~ 309 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCC
Confidence 4788999999999998532 48888864 5678999999999999999999999999876531000000112
Q ss_pred cCcccchhcccccc
Q psy13669 76 FGFRGEALSSLCAL 89 (172)
Q Consensus 76 ~G~~G~gl~s~~~~ 89 (172)
.+..|+||+-+..+
T Consensus 310 ~~G~GLGL~i~~~i 323 (394)
T 2e0a_A 310 LAGFGYGLPISRLY 323 (394)
T ss_dssp SSCSSCHHHHHHHH
T ss_pred CCCcccCHHHHHHH
Confidence 23348898765444
No 46
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.18 E-value=2.2e-11 Score=101.33 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHhHhhcCC---------CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccc
Q psy13669 6 NLATAVKELVENSLDAGA---------TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVET 75 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a---------~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~ 75 (172)
.+.+++.|||+||++|.. ..|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++++.....+.... .
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~-~ 309 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT-P 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCC-C
Confidence 478899999999999852 148888864 56788999999999999999999999988764310000011 1
Q ss_pred cCcccchhccccccc-----ceEEEEe
Q psy13669 76 FGFRGEALSSLCALS-----SVVIVTR 97 (172)
Q Consensus 76 ~G~~G~gl~s~~~~~-----~v~i~T~ 97 (172)
.+..|+||+-+..+. ++.+.|.
T Consensus 310 ~~G~GLGL~i~~~i~~~~gG~i~v~s~ 336 (394)
T 2btz_A 310 LAGFGYGLPISRLYAKYFQGDLQLFSM 336 (394)
T ss_dssp ----CCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCccCCHHHHHHHHHHhCCEEEEEec
Confidence 223488887544432 3555554
No 47
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.18 E-value=7.3e-11 Score=92.01 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhHhhcCC--CeEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccchh
Q psy13669 7 LATAVKELVENSLDAGA--TSVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEAL 83 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a--~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl 83 (172)
+.+++.|||.||++|.. ..|.|.+.. .+...|.|.|||+||+++.++.+|.+|++++. +..|+||
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------------~g~GlGL 223 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------------GGPGLGL 223 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------------CCCTTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------------CCCcccH
Confidence 77899999999999864 478887754 56789999999999999999999999986543 1238888
Q ss_pred cccccc
Q psy13669 84 SSLCAL 89 (172)
Q Consensus 84 ~s~~~~ 89 (172)
+.+..+
T Consensus 224 ~i~~~~ 229 (268)
T 4ew8_A 224 ALVKAL 229 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.16 E-value=2.2e-11 Score=101.05 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHhHhhcCCC----------eEEEEEEe-CCceEEEEEeCCCCCChhhHHhhhccCccCCc
Q psy13669 6 NLATAVKELVENSLDAGAT----------SVEVKLKD-YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKL 64 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a~----------~i~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~ 64 (172)
.+.+++.|||.||++|... .|.|.+.. .+.+.|.|.|+|+||++++++.+|++|++++.
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 307 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCC
Confidence 4789999999999998532 68888864 56788999999999999999999999998775
No 49
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.14 E-value=5.5e-11 Score=98.71 Aligned_cols=97 Identities=16% Similarity=0.287 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHhHhhcC--------------CCeEEEEEE-eCCceEEEEEeCCCCCChhhH------------------
Q psy13669 6 NLATAVKELVENSLDAG--------------ATSVEVKLK-DYGSELVEVTDNGGGVHEDNY------------------ 52 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~--------------a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l------------------ 52 (172)
.+.+++.|||.||++|+ ...|.|.+. .++...|.|.|||+||+++.+
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~ 185 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 185 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcC
Confidence 45566999999999996 335777765 467889999999999999987
Q ss_pred ------HhhhccCccCCcccccccccccccCcccchhcccccc-----cceEEEEeecCCCceEEEEEe
Q psy13669 53 ------EGLTLKHHTSKLREFTDLTSVETFGFRGEALSSLCAL-----SSVVIVTRHKLSGVGHWLEFD 110 (172)
Q Consensus 53 ------~~~~~~~~~sk~~~~~~~~~~~~~G~~G~gl~s~~~~-----~~v~i~T~~~~~~~~~~~~~~ 110 (172)
+.+|++|++++... ...+.+|+||+.+... +++.+.|.. +....+.+.+.
T Consensus 186 ~~~~~~~~iF~p~fst~~~~-------~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~-g~Gt~f~i~lP 246 (379)
T 1b3q_A 186 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVVESLNGSMGIESEK-DKGTKVTIRLP 246 (379)
T ss_dssp CTHHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEET-TTEEEEEEEEE
T ss_pred CHHHHHHHhcCCCCccCCcc-------CCCCCccccHHHHHHHHHHCCCEEEEEEcC-CCCeEEEeccC
Confidence 77999988776432 1123458888654333 357777764 33334555554
No 50
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.12 E-value=5.1e-11 Score=95.90 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHhHhhcC--CCeEEEEEE-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCcccch
Q psy13669 6 NLATAVKELVENSLDAG--ATSVEVKLK-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEA 82 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~--a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G~g 82 (172)
.+.+++.||+.||++|. +..|.|.+. ..+...|.|.|||+||+++.++.+|++|+++|.. | .|+|
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~-----------g-~GlG 311 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----------G-TGLG 311 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------------CC
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCCC-----------C-ccch
Confidence 47789999999999986 457888775 3567899999999999999999999999877631 2 3888
Q ss_pred hccccc
Q psy13669 83 LSSLCA 88 (172)
Q Consensus 83 l~s~~~ 88 (172)
|+.+..
T Consensus 312 L~i~~~ 317 (349)
T 3a0r_A 312 LSICRK 317 (349)
T ss_dssp CTHHHH
T ss_pred HHHHHH
Confidence 875443
No 51
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.11 E-value=1.4e-10 Score=85.57 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEE--E-eCCceEEEEEeCCCCCChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKL--K-DYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~--~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
.+.+++.|||.||+++.. ..|.|.+ . ..+...|.|.|||+||+++.+..+|.+|++.+.... ...+..|
T Consensus 43 ~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~------~~~~g~G 116 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART------RKLGGTG 116 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC------CCCCCCC
Confidence 367899999999999863 3455555 3 245688999999999999999999999987543211 1123448
Q ss_pred chhcccccc
Q psy13669 81 EALSSLCAL 89 (172)
Q Consensus 81 ~gl~s~~~~ 89 (172)
+||+.+..+
T Consensus 117 lGL~iv~~~ 125 (177)
T 3sl2_A 117 LGLAIAKEM 125 (177)
T ss_dssp CHHHHHHHH
T ss_pred cCHHHHHHH
Confidence 888765544
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.06 E-value=1.7e-10 Score=82.91 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHhHhhcC---CCeEEEEEEe-CC----------ceEEEEEeCCCCCChhhHHhhhccCccCCcccccccc
Q psy13669 6 NLATAVKELVENSLDAG---ATSVEVKLKD-YG----------SELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLT 71 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~---a~~i~i~~~~-~~----------~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~ 71 (172)
.+.+++.||+.||++|. ...|.|.+.. .+ ...|.|.|||+||++++++.+|++|++++.
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------
Confidence 36789999999999976 4567777642 23 678999999999999999999999987652
Q ss_pred cccccCcccchhcccccc
Q psy13669 72 SVETFGFRGEALSSLCAL 89 (172)
Q Consensus 72 ~~~~~G~~G~gl~s~~~~ 89 (172)
+..|+||+.+..+
T Consensus 121 -----~g~GlGL~i~~~~ 133 (160)
T 1r62_A 121 -----GGTGLGLSIARNL 133 (160)
T ss_dssp --------CHHHHHHHHH
T ss_pred -----CCCccCHHHHHHH
Confidence 1248888765554
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.96 E-value=1.2e-09 Score=76.73 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHhHhhcC-CCeEEEEEE-eCCceEEEEEeCCCCCChhhH
Q psy13669 6 NLATAVKELVENSLDAG-ATSVEVKLK-DYGSELVEVTDNGGGVHEDNY 52 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~-a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l 52 (172)
.+.+++.||+.||++|. +..|.|.+. ..+...|.|.|||+||+++.+
T Consensus 40 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 35678999999999975 567888875 366789999999999998754
No 54
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.95 E-value=1.3e-09 Score=85.09 Aligned_cols=72 Identities=19% Similarity=0.093 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHhHhhcCC--CeEEEEEE-eCCceEEEEEeCCCC--CChhhHHhhhccCccCCcccccccccccccCccc
Q psy13669 6 NLATAVKELVENSLDAGA--TSVEVKLK-DYGSELVEVTDNGGG--VHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRG 80 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a--~~i~i~~~-~~~~~~i~V~DnG~G--i~~~~l~~~~~~~~~sk~~~~~~~~~~~~~G~~G 80 (172)
.+.+++.||+.||++|.. ..|.|.+. .++...|.|.|+|+| |+++.++.+|.++++++.. | .|
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~-----------G-~G 213 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG-----------G-PW 213 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCH-----------H-HH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCC-----------C-cc
Confidence 467899999999999964 36777775 467788999999988 6677778888877655431 3 38
Q ss_pred chhcccccc
Q psy13669 81 EALSSLCAL 89 (172)
Q Consensus 81 ~gl~s~~~~ 89 (172)
+||+-+..+
T Consensus 214 LGLai~~~i 222 (247)
T 4fpp_A 214 VQAAYLNAL 222 (247)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765544
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.88 E-value=3.3e-09 Score=73.94 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhHhhcC-CCeEEEEEEe-CCceEEEEEeCCCCCChhh
Q psy13669 6 NLATAVKELVENSLDAG-ATSVEVKLKD-YGSELVEVTDNGGGVHEDN 51 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~-a~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~ 51 (172)
.+.+++.||+.||++|. +..|.|.+.. .+ ..+.|.|||+||+++.
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 46788999999999987 6688888864 44 8899999999999764
No 56
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=98.84 E-value=5.8e-09 Score=78.82 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHhhcC-CCeEEEEEE-eCCceEEEEEeCCCCCChhhH
Q psy13669 7 LATAVKELVENSLDAG-ATSVEVKLK-DYGSELVEVTDNGGGVHEDNY 52 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~-a~~i~i~~~-~~~~~~i~V~DnG~Gi~~~~l 52 (172)
+.+++.||+.||++|+ +..|.|.+. +.+...|.|.|||+||+++.+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 5578999999999975 457888875 467789999999999998865
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.81 E-value=8.6e-09 Score=71.39 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHhHhhcCC-CeEEEEEEe-CCceEEEEEeCCCCCChhh
Q psy13669 6 NLATAVKELVENSLDAGA-TSVEVKLKD-YGSELVEVTDNGGGVHEDN 51 (172)
Q Consensus 6 ~~~~~l~eLi~Na~da~a-~~i~i~~~~-~~~~~i~V~DnG~Gi~~~~ 51 (172)
.+.+++.||+.||++|.. ..|.|.+.. .+ ..+.|.|||+||+++.
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 356899999999999864 478877753 44 8999999999999875
No 58
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.89 E-value=1.7e-05 Score=65.96 Aligned_cols=68 Identities=26% Similarity=0.302 Sum_probs=44.7
Q ss_pred eccHHHHHHHHHHhHhhcC-----CCeEEEEEEe--CCceEEEEEeCCCCCChhhHHhhhccCccCCccccccccccccc
Q psy13669 4 VLNLATAVKELVENSLDAG-----ATSVEVKLKD--YGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREFTDLTSVETF 76 (172)
Q Consensus 4 i~~~~~~l~eLi~Na~da~-----a~~i~i~~~~--~~~~~i~V~DnG~Gi~~~~l~~~~~~~~~sk~~~~~~~~~~~~~ 76 (172)
+..+..++.||+.||++|+ ...|.|.+.. ++.+.|.|.|+|+|+++. . . .
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~----------~---~----------~ 351 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR----------D---G----------A 351 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC----------C---C----------C
Confidence 4567889999999999986 5678888764 347899999999999975 0 0 0
Q ss_pred Ccccchhcccccccc-eEE
Q psy13669 77 GFRGEALSSLCALSS-VVI 94 (172)
Q Consensus 77 G~~G~gl~s~~~~~~-v~i 94 (172)
+..|.||+.+..++. +.+
T Consensus 352 ~~~G~GL~lv~~l~~~~~~ 370 (399)
T 3ke6_A 352 RGRGRGLAMAEALVSEARI 370 (399)
T ss_dssp -----CHHHHHTTSSEEEE
T ss_pred CCCCcHHHHHHHHHHheee
Confidence 234788888777764 443
No 59
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.22 E-value=0.00026 Score=53.35 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHhhcC--------CCeEEEEEEeC---CceEEEEEeCCCCCChhhHHhhhccC
Q psy13669 7 LATAVKELVENSLDAG--------ATSVEVKLKDY---GSELVEVTDNGGGVHEDNYEGLTLKH 59 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~--------a~~i~i~~~~~---~~~~i~V~DnG~Gi~~~~l~~~~~~~ 59 (172)
+...+.+|++||++|- ...|.|.+... +...+.|.|+|++|+++.++.+|+.+
T Consensus 106 ~~~~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~ 169 (192)
T 1ixm_A 106 YDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNG 169 (192)
T ss_dssp THHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC------
T ss_pred CcHHHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCC
Confidence 4456788888887763 45788888653 57899999999999999988888644
No 60
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=59.85 E-value=4.8 Score=20.02 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=10.2
Q ss_pred HHHHHHHHhHhh
Q psy13669 9 TAVKELVENSLD 20 (172)
Q Consensus 9 ~~l~eLi~Na~d 20 (172)
.-|.||++|+++
T Consensus 12 kqieelldncie 23 (31)
T 4h62_V 12 KQIEELLDNCIE 23 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 458899999987
No 61
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=49.32 E-value=21 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=14.7
Q ss_pred hhcCCCeEEEEEEeCCceEEEEEeCCCC
Q psy13669 19 LDAGATSVEVKLKDYGSELVEVTDNGGG 46 (172)
Q Consensus 19 ~da~a~~i~i~~~~~~~~~i~V~DnG~G 46 (172)
.||+...+.+.+.......+.|.|++.|
T Consensus 29 ~dag~~~~~v~v~gp~~~~~~v~d~~dG 56 (94)
T 2w0p_A 29 REAGAGGLAIAVEGPSKAEISFEDRKDG 56 (94)
T ss_dssp GGGCSCCEEEEEEESSCCEEEEEECTTS
T ss_pred cCCCCCcEEEEEECCCCCeEEEEECCCC
Confidence 3445555555554333345566666655
No 62
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=42.85 E-value=21 Score=22.70 Aligned_cols=27 Identities=26% Similarity=0.435 Sum_probs=11.7
Q ss_pred hcCCCeEEEEEEeCCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKDYGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~~~~~~i~V~DnG~G 46 (172)
||+...+.+.+.......+.+.|++.|
T Consensus 33 dag~~~l~v~v~~p~~~~~~v~d~~dG 59 (97)
T 2bp3_A 33 DAGEGGLSLAIEGPSKAEISCTDNQDG 59 (97)
T ss_dssp TCCSEEEEEEEEESSCCEEEEEECSSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCC
Confidence 334444444443222234455555544
No 63
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=42.24 E-value=16 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=14.4
Q ss_pred hcCCCeEEEEEEe--CCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKD--YGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~--~~~~~i~V~DnG~G 46 (172)
||+...+.+.+.. .....+.|.|++.|
T Consensus 35 ~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 35 SAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp TSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred CCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 4555556666532 22345666666665
No 64
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.39 E-value=22 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=12.0
Q ss_pred hcCCCeEEEEEEeCCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKDYGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~~~~~~i~V~DnG~G 46 (172)
||+...+.+.+.......+.|.|++.|
T Consensus 38 dag~~~l~v~v~~p~~~~v~v~d~~dG 64 (105)
T 2ee6_A 38 EAGAGGLSIAVEGPSKAEITFDDHKNG 64 (105)
T ss_dssp SSCCCCEEEEEESSSCEEEEECCCCSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCC
Confidence 334444555553222234455555544
No 65
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=37.96 E-value=27 Score=30.19 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHhhc---C-CCeEEEEEE--eCCceEEEEEeCCC---CCChhhHH
Q psy13669 7 LATAVKELVENSLDA---G-ATSVEVKLK--DYGSELVEVTDNGG---GVHEDNYE 53 (172)
Q Consensus 7 ~~~~l~eLi~Na~da---~-a~~i~i~~~--~~~~~~i~V~DnG~---Gi~~~~l~ 53 (172)
|..|++|.|-||+=| . ...|.|.+. ++ .|.|..-|. |++.+++.
T Consensus 297 P~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d---riei~npG~l~~~~t~e~~~ 349 (583)
T 3lmm_A 297 PRLAVREAMLNAMIHRDWNRSEPIDVRWIELDS---TLIVRSPGGFPAAITSENVL 349 (583)
T ss_dssp CHHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT---EEEEEEESCCCTTCCTTSST
T ss_pred CHHHHHHHHHHHHhccccCCCCCEEEEEEecCC---EEEEEcCCCCCCCCCHHHhc
Confidence 578999999999854 2 346888886 44 699999986 77776643
No 66
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=34.56 E-value=26 Score=23.33 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.2
Q ss_pred EEEEEeCCCC
Q psy13669 37 LVEVTDNGGG 46 (172)
Q Consensus 37 ~i~V~DnG~G 46 (172)
.+.|.|++.|
T Consensus 62 ~~~v~d~~dG 71 (119)
T 2k9u_A 62 EIAFEDRKDG 71 (119)
T ss_dssp EEEEECCSSS
T ss_pred eEEEEECCCC
Confidence 3444444443
No 67
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=33.58 E-value=14 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCChhhHH-hhhccC
Q psy13669 37 LVEVTDNGGGVHEDNYE-GLTLKH 59 (172)
Q Consensus 37 ~i~V~DnG~Gi~~~~l~-~~~~~~ 59 (172)
+-.|.+||.||.+.+-. .+|..+
T Consensus 54 sAiiT~dGiGInP~QtAGnvFlKh 77 (92)
T 1j0g_A 54 SAIITNDGIGINPAQTAGNVFLKH 77 (92)
T ss_dssp EEEECTTSCCCCCSSBHHHHHHHT
T ss_pred eEEEecCCcccChhhccchhhhhc
Confidence 57789999999987644 466655
No 68
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=30.71 E-value=33 Score=21.30 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=12.9
Q ss_pred hcCCCeEEEEEEe--CCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKD--YGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~--~~~~~i~V~DnG~G 46 (172)
||+...+.+.+.. .....+.|.|+|.|
T Consensus 26 ~aG~~~l~v~v~~p~g~~~~~~v~d~~dG 54 (89)
T 3cnk_A 26 KAGNNMLLVGVHGPRTPCEEILVKHVGSR 54 (89)
T ss_dssp TSCSCCEEEEEECSSSCCSEEEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCceeEEEEECCCC
Confidence 4455555555532 11234555665555
No 69
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=30.23 E-value=36 Score=22.28 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=13.1
Q ss_pred hcCCCeEEEEEEe--CCceEEEEEeCCCC
Q psy13669 20 DAGATSVEVKLKD--YGSELVEVTDNGGG 46 (172)
Q Consensus 20 da~a~~i~i~~~~--~~~~~i~V~DnG~G 46 (172)
||+...+.+.+.. .....+.|.|++.|
T Consensus 38 daG~~~l~v~i~~~~g~~~~~~v~d~~dG 66 (113)
T 2dia_A 38 EAGPGALGLEAVSDSGTKAEVSIQNNKDG 66 (113)
T ss_dssp SCCSCCEEEEEEETTTEECEEEEEECTTS
T ss_pred CCCCccEEEEEECCCCCEeeEEEEECCCC
Confidence 3444555555532 12344556666654
No 70
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.15 E-value=29 Score=23.46 Aligned_cols=10 Identities=30% Similarity=0.601 Sum_probs=4.1
Q ss_pred cCCCeEEEEE
Q psy13669 21 AGATSVEVKL 30 (172)
Q Consensus 21 a~a~~i~i~~ 30 (172)
|+...+.+.+
T Consensus 49 aG~~~l~v~i 58 (125)
T 2eec_A 49 AGPGTLSVTI 58 (125)
T ss_dssp TCSCCEEEEE
T ss_pred CCCCcEEEEE
Confidence 3333444444
No 71
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=28.95 E-value=37 Score=23.03 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=3.3
Q ss_pred EEEEeCCC
Q psy13669 38 VEVTDNGG 45 (172)
Q Consensus 38 i~V~DnG~ 45 (172)
+.+.|++.
T Consensus 76 ~~v~d~~d 83 (131)
T 2di9_A 76 IECSDNGD 83 (131)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 34444443
No 72
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=28.83 E-value=44 Score=21.03 Aligned_cols=10 Identities=30% Similarity=0.189 Sum_probs=4.6
Q ss_pred EEEEEeCCCC
Q psy13669 37 LVEVTDNGGG 46 (172)
Q Consensus 37 ~i~V~DnG~G 46 (172)
.+.|.|+|.|
T Consensus 52 ~~~v~d~~dG 61 (96)
T 1v05_A 52 EVYVKHMGNR 61 (96)
T ss_dssp EEEEEECSTT
T ss_pred EEEEEeCCCC
Confidence 3444554443
No 73
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=24.74 E-value=43 Score=23.13 Aligned_cols=7 Identities=0% Similarity=0.174 Sum_probs=2.6
Q ss_pred EEEEeCC
Q psy13669 38 VEVTDNG 44 (172)
Q Consensus 38 i~V~DnG 44 (172)
+.+.|++
T Consensus 90 ~~~~d~~ 96 (138)
T 2nqc_A 90 LDCRECP 96 (138)
T ss_dssp EEEEEET
T ss_pred eeEEECC
Confidence 3333433
No 74
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=24.42 E-value=1.5e+02 Score=24.25 Aligned_cols=38 Identities=8% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhHhhcCCCeEEEEEEeCCceEEEEEeCCC
Q psy13669 7 LATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGG 45 (172)
Q Consensus 7 ~~~~l~eLi~Na~da~a~~i~i~~~~~~~~~i~V~DnG~ 45 (172)
....+.+|+..|++.+|+.|+|... .+...+.++-||.
T Consensus 33 ~~~~~~~ll~~a~~~~aSDIhi~~~-~~~~~v~~RidG~ 70 (418)
T 1p9r_A 33 IIKLINAMLGEAIKEGASDIHIETF-EKTLSIRFRVDGV 70 (418)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEE-TTEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHCCCeeEEEEec-CCceeEEEEECCE
Confidence 4567889999999999999999984 3455677777776
No 75
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.78 E-value=38 Score=22.78 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=3.6
Q ss_pred EEEEeCCCC
Q psy13669 38 VEVTDNGGG 46 (172)
Q Consensus 38 i~V~DnG~G 46 (172)
+.|.|++.|
T Consensus 59 ~~v~d~~dG 67 (124)
T 2dmb_A 59 ADVIENEDG 67 (124)
T ss_dssp CEEEECTTS
T ss_pred eEEEeCCCC
Confidence 334444333
No 76
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.58 E-value=1.8e+02 Score=19.44 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=31.8
Q ss_pred HhHhhcCCCeEEEEEEe-CCceEEEEEeCCCC-----CChhhHHhhh
Q psy13669 16 ENSLDAGATSVEVKLKD-YGSELVEVTDNGGG-----VHEDNYEGLT 56 (172)
Q Consensus 16 ~Na~da~a~~i~i~~~~-~~~~~i~V~DnG~G-----i~~~~l~~~~ 56 (172)
...++...+.+...+++ .+...+.|.|...| ||++++-.+.
T Consensus 48 N~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~ 94 (117)
T 2hc5_A 48 NKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFY 94 (117)
T ss_dssp HHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHH
Confidence 34566667788888864 67889999999988 9999877654
No 77
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=22.32 E-value=57 Score=21.36 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=2.6
Q ss_pred EEEeCCC
Q psy13669 39 EVTDNGG 45 (172)
Q Consensus 39 ~V~DnG~ 45 (172)
.|.|++.
T Consensus 61 ~v~d~~d 67 (115)
T 2d7m_A 61 NIRDNGD 67 (115)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 3333333
Done!