RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13669
(172 letters)
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 252 bits (647), Expect = 7e-85
Identities = 113/169 (66%), Positives = 139/169 (82%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VVL+L+TAVKELVENSLDAGAT++++KLKDYG +L+EV+DNG GV E+N+EGLTLKHHTS
Sbjct: 31 VVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90
Query: 63 KLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K++EF DLT VETFGFRGEALSSLCALS V I T H + VG L FDH+G I KT
Sbjct: 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP 150
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTVS+ +FSTLPVR KEF R++KKE+AKM QVL+ YC+++ G++
Sbjct: 151 RPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIR 199
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 247 bits (633), Expect = 1e-82
Identities = 81/169 (47%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
V+ +L TAVKELV+NS+DA A +E+ KDYG E +E +DNG G+ NYE L LKH+TS
Sbjct: 22 VITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81
Query: 63 KLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K+ +F D+ V+T GFRGEALSSLC ++ + ++T LE+D GHI +KT S
Sbjct: 82 KIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTS-PPKADKLEYDMVGHITSKTTTS 140
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTV + +F LPVRQKEF + K++F K V+ GY ++ +K
Sbjct: 141 RNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIK 189
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 136 bits (344), Expect = 1e-39
Identities = 48/158 (30%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 8 ATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTSKLREF 67
A A+KE++EN LDA +TS++V +K+ G +L+++ DNG G+ +++ + + + TSKL+ F
Sbjct: 30 ANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSF 89
Query: 68 TDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGT 127
DL S+ T+GFRGEAL+S+ ++ V I T+ + + + GT
Sbjct: 90 EDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGT 149
Query: 128 TVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCL 165
+++ ++F + R+K ++ +E+ K+ +V+ Y +
Sbjct: 150 QITVEDLFYNIATRRK-ALKNPSEEYGKILEVVGRYSV 186
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 134 bits (341), Expect = 3e-39
Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 7/156 (4%)
Query: 8 ATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTL---KHHTSKL 64
A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D L L +H TSK+
Sbjct: 26 ASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDE---LALALARHATSKI 82
Query: 65 REFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQ 124
DL ++ + GFRGEAL+S+ ++S + + +R + T +
Sbjct: 83 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHP 142
Query: 125 VGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVL 160
VGTT+ + ++F P R+K F R K EF + +++
Sbjct: 143 VGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEII 177
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 35.6 bits (81), Expect = 0.005
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 7 LATAVKELVENSLDA-------GATSVEVKLKDYGSEL--VEVTDNGGGVHEDN 51
L V+EL+ENSLDA + + L D ++ V V DNG G+
Sbjct: 32 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE 85
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 34.8 bits (79), Expect = 0.012
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 7 LATAVKELVENSLDA-----GATSVEVKLKDYGSELVE--VTDNGGGVHEDNYE 53
L T VKE V+N+LDA + V+++ G + V + DNG G+ +
Sbjct: 38 LITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIP 91
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 34.4 bits (78), Expect = 0.014
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 7 LATAVKELVENSLDA-------GATSVEVKLKDYGSEL--VEVTDNGGGVHEDNYE 53
L V+EL+ENSLDA + + L D ++ V V DNG G+
Sbjct: 33 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.038
Identities = 33/201 (16%), Positives = 55/201 (27%), Gaps = 56/201 (27%)
Query: 2 AVVLNLAT-------AVKELVENSLDAGATSVEVKLKDYGSELVEVTDNG--------GG 46
A+ L KEL++N + A + K S L G GG
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 47 -------VHE-----DNYEGL---TLKHHTSKLREFTDLTSVETFGF-RG---------- 80
E Y L +K L E T F +G
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 81 ------EALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVSRQVGTTVSLHNI 134
+ L S +S +I + + H++ L S G T +
Sbjct: 223 SNTPDKDYLLS-IPISCPLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 135 FSTLPVRQ----KEFHRHLKK 151
+ + + + + F ++K
Sbjct: 278 VTAVAIAETDSWESFFVSVRK 298
Score = 28.9 bits (64), Expect = 1.2
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 111 HHGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHL 149
HG ++ LV + I S L Q++F++ L
Sbjct: 12 SHGSLEHVLLVPT------ASFFIASQL---QEQFNKIL 41
Score = 26.9 bits (59), Expect = 4.6
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 50/176 (28%)
Query: 1 MAVVLNLATAVKELVENSLDA-------GATSVEVKLKDYG------SELVEVTDNGGG- 46
AV + + + + A G E Y S L + +N G
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA----YPNTSLPPSILEDSLENNEGV 334
Query: 47 ------VHEDNYEGLTLKHHTSKLREFTDLTSVETFGFRGEALS-SL-CALSSVVIVTRH 98
+ LT + + + + G+ + SL ++V V+
Sbjct: 335 PSPMLSI-----SNLTQEQVQDYVNKT------NSHLPAGKQVEISLVNGAKNLV-VSGP 382
Query: 99 --KLSGVGHWLEFDH--HGHIKTKTLVS-RQVGTTVSLHNIFSTLPVRQKEFHRHL 149
L G+ L G +++ S R+ + N F LPV FH HL
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRF--LPV-ASPFHSHL 431
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 32.1 bits (74), Expect = 0.082
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 11 VKELVENSLD---AG-ATSVEVKLKDYGSELVEVTDNGGG 46
+E+++NS+D AG A +EV L GS EV+D+G G
Sbjct: 55 AQEVIDNSVDEALAGHAKQIEVTLYKDGS--CEVSDDGRG 92
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP:
d.14.1.3 d.122.1.2
Length = 390
Score = 31.7 bits (73), Expect = 0.096
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 11 VKELVENSLD---AG-ATSVEVKLKDYGSELVEVTDNGGG 46
+E+++NS+D AG A V+V L S +EV D+G G
Sbjct: 36 GQEVIDNSVDEALAGHAKRVDVILHADQS--LEVIDDGRG 73
>3zxo_A Redox sensor histidine kinase response regulator; transferase;
HET: MSE; 1.90A {Mycobacterium tuberculosis}
Length = 129
Score = 30.7 bits (70), Expect = 0.098
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 21 AGATSVEVKLKDYGSEL-VEVTDNGGGV 47
A A+++ V++ +L +EVTDNG G+
Sbjct: 59 AAASTLTVRV-KVDDDLCIEVTDNGRGM 85
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli BL21} SCOP: d.122.1.3
Length = 161
Score = 30.7 bits (70), Expect = 0.14
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 10 AVKELVENSLDAGATSVEVKLKDYGSELV-EVTDNGGGVHEDNYE 53
AV +V N+ G ++V + +V D+G G+ + +
Sbjct: 51 AVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK 95
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase;
HET: ATP; 1.74A {Bacillus subtilis}
Length = 128
Score = 29.9 bits (68), Expect = 0.19
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 21 AGATSVEVKLKDYGSEL-VEVTDNGGG 46
+ A + V ++ E+ + V+D+G
Sbjct: 56 SQAKTCRVDIQQLWKEVVITVSDDGTF 82
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase;
1.90A {Mycobacterium tuberculosis}
Length = 124
Score = 29.9 bits (68), Expect = 0.19
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 21 AGATSVEVKLKDYGSEL-VEVTDNGGGVHED 50
A ATS+ + + ++ VEV D+G G+ D
Sbjct: 55 ANATSLAINV-SVEDDVRVEVVDDGVGISGD 84
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain,
transferase; HET: MSE ADP; 2.10A {Bacillus subtilis}
PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Length = 218
Score = 29.2 bits (66), Expect = 0.54
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 7 LATAVKELVENSLD-AGATSVEVKLKDYGSEL-VEVTDNGGG 46
L+ +KE V N + + A + V ++ E+ + V+D+G
Sbjct: 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTF 172
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 28.6 bits (63), Expect = 1.00
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 3 VVLNL-ATAVKELVEN--SLDAGATSVEVKLKDYGSEL-VEVTDNGGGVHEDNYEGL 55
++ L +++ VE G +V+ + +L ++++D GGGV + L
Sbjct: 257 MLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRL 313
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 27.8 bits (61), Expect = 1.8
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 31/158 (19%)
Query: 3 VVLNLAT-AVKELVENSLDAGAT-SVEVKLKDYGSEL-VEVTDNGGGVHEDNYEGLTLKH 59
+V L A++ +E+ + G ++V + +L V+++D GGGV +
Sbjct: 247 MVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRK-----IDR 301
Query: 60 HTSKLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKT 119
+ + VET A S + G +
Sbjct: 302 LFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQY-------------FQGDL---K 345
Query: 120 LVSRQ-VGTTVSLH-NIFST-----LPVRQKEFHRHLK 150
L S + GT ++ ST LPV K +H
Sbjct: 346 LYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYN 383
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 271
Score = 26.9 bits (60), Expect = 3.5
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 17 NSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHH 60
N DA + L D EV D ++ + + L +
Sbjct: 149 NLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRK 192
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 26.0 bits (58), Expect = 4.7
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 3 VVLNLATAVKELVENSLDA--GATSVEVKLKDYGSEL-VEVTDNGGGVHEDNYE 53
V++NL V+N+++A +++ +D +++ V V ++G + E+ E
Sbjct: 51 VLINL-------VQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE 97
>3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside
hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A
{Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A*
Length = 546
Score = 26.4 bits (58), Expect = 5.8
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 57 LKHHTSKLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIK 116
L +R D + VE+F G + ++S V T +L + G
Sbjct: 473 LDGEKFTMRLLVDHSIVESFAQGGRS-----CITSRVYPTEAIYGAAKLFLFNNATGASI 527
Query: 117 TKTL 120
T +L
Sbjct: 528 TASL 531
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 26.3 bits (57), Expect = 5.8
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 3 VVLNL-ATAVKELVENSLDAGA-TSVEVKLKDYGSEL-VEVTDNGGGVHEDNYEGLTLKH 59
++ L A++ VE+ + + T +EV + +L ++++D GGGV + L
Sbjct: 234 MLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT 293
Query: 60 HTSKLREFTDLTSVETFGFRGEALS 84
+++ D + G L
Sbjct: 294 YSTAPTPVMDNSRNAPLAGFGYGLP 318
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
component system, transfera; 1.60A {Escherichia coli}
SCOP: d.122.1.3
Length = 160
Score = 25.6 bits (57), Expect = 6.3
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 21/62 (33%)
Query: 3 VVLNLATAVKELVENSLDA----GA-----TSVEVKLKDYGSE-----LVEVTDNGGGVH 48
V+LN+ V N+L A G T +L +G ++V DNG G+
Sbjct: 52 VLLNI-------VRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIP 104
Query: 49 ED 50
Sbjct: 105 PH 106
>2qwu_A Intracellular growth locus, subunit C; structure, IGLC, cell
invasion; 1.65A {Francisella tularensis subsp}
Length = 211
Score = 25.9 bits (56), Expect = 7.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 6 NLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHED 50
N+ T ++E V + L A AT +++KL + + TD G+ D
Sbjct: 98 NVRTKIEEKVSSILQASATDMKIKLGNSNKKQEYKTDEAWGIMID 142
>2po1_B Probable exosome complex exonuclease 2; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Length = 277
Score = 25.8 bits (57), Expect = 8.3
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 17 NSLDAGATSVEVKLKDYGSELVEVTDNGGGVH-EDNYEGLTLKHH 60
N +DA + L + V + G V D E L ++
Sbjct: 151 NLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKI 195
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein; 2.08A
{Mus musculus}
Length = 288
Score = 25.7 bits (56), Expect = 8.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 142 QKEFHRHLKKEFAKMTQVL 160
Q+E+ + LKK + K+ L
Sbjct: 261 QREYQQELKKNYNKLRDSL 279
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,603,996
Number of extensions: 146277
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 33
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)