RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13669
(172 letters)
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 139 bits (350), Expect = 1e-42
Identities = 113/169 (66%), Positives = 139/169 (82%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VVL+L+TAVKELVENSLDAGAT++++KLKDYG +L+EV+DNG GV E+N+EGLTLKHHTS
Sbjct: 3 VVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 62
Query: 63 KLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K++EF DLT VETFGFRGEALSSLCALS V I T H + VG L FDH+G I KT
Sbjct: 63 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYP 122
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
R GTTVS+ +FSTLPVR KEF R++KKE+AKM QVL+ YC+++ G++
Sbjct: 123 RPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIR 171
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 132 bits (333), Expect = 5e-40
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
Query: 3 VVLNLATAVKELVENSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEGLTLKHHTS 62
VV A+ VKELVENSLDAGAT +++ ++ G++L+ + DNG G+ +D +H TS
Sbjct: 21 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80
Query: 63 KLREFTDLTSVETFGFRGEALSSLCALSSVVIVTRHKLSGVGHWLEFDHHGHIKTKTLVS 122
K+ DL ++ + GFRGEAL+S+ ++S + + +R + T +
Sbjct: 81 KIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAA 140
Query: 123 RQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLVALGVK 171
VGTT+ + ++F P R+K F R K EF + +++ L V
Sbjct: 141 HPVGTTLEVLDLFYNTPARRK-FLRTEKTEFNHIDEIIRRIALARFDVT 188
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 52.9 bits (126), Expect = 1e-09
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 24/175 (13%)
Query: 7 LATAVKELVENSLDA-------GATSVEVKLKDYGSELVE--VTDNGGGVHEDNYEGLTL 57
L V+EL+ENSLDA + + L D ++ + V DNG G+
Sbjct: 23 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFG 82
Query: 58 KHHTSKLREFTDLTSVETFGFRGEALSSLCALS------SVVIVTRHKLSGVGHWLEFDH 111
+ + + +T G G + + S + I T S + +
Sbjct: 83 RVLY-----SSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 137
Query: 112 HGHIKTKTLVSRQVGTTVSLHNIFSTLPVRQKEFHRHLKKEFAKMTQVLYGYCLV 166
+ K +V F V K +++ + + ++
Sbjct: 138 DIN---KNEPIIVERGSVENTRGFHGTSVAIS-IPGDWPKAKSRIYEYIKRTYII 188
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 34.7 bits (79), Expect = 0.003
Identities = 31/147 (21%), Positives = 45/147 (30%), Gaps = 23/147 (15%)
Query: 9 TAVKELVENSLDAGATSVEVKLKD-----YGSELVE------------VTDNGGGVHED- 50
++EL+ NS DA L D G EL + D G G+ +
Sbjct: 27 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD 86
Query: 51 --NYEGLTLKHHTSKLREFTDLTSVETFG--FRGEALSSLCALSSVVIVTRH-KLSGVGH 105
N G K T E + + F S+ V ++T+H
Sbjct: 87 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAW 146
Query: 106 WLEFDHHGHIKTKTLVSRQVGTTVSLH 132
++T T GT V LH
Sbjct: 147 ESSAGGSFTVRTDTGEPMGRGTKVILH 173
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.9 bits (67), Expect = 0.091
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 7 LATAVKELVENSLDAGATSVEVKLKDYGSEL-VEVTDNGGGVHEDNYEGLTLKHHTSKLR 65
+ AV +V N+ G ++V + +V D+G G+ + + L +
Sbjct: 48 IKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHL--------FQ 99
Query: 66 EFTDLTSVETFGFRGEALS 84
F S T G L+
Sbjct: 100 PFVRGDSARTISGTGLGLA 118
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 27.1 bits (59), Expect = 0.86
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 17 NSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNYEG 54
N LDA + L + VE NG V+++ G
Sbjct: 152 NVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVG 189
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 26.8 bits (59), Expect = 0.91
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 7 LATAVKELVENSLDA-GATSVEVKLKDYGSEL-VEVTDNGGGVHEDNYEGLTLKHHTSKL 64
L AV + N++ GAT V++ + + + + DNG GV E + + +
Sbjct: 45 LRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST 104
Query: 65 REF 67
Sbjct: 105 ASH 107
>d1uypa1 b.29.1.19 (A:295-432) Beta-fructosidase (invertase),
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 138
Score = 26.1 bits (57), Expect = 1.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 57 LKHHTSKLREFTDLTSVETFGFRGEALSSLC 87
T+++R F D SVE F A S
Sbjct: 80 EDEATNRIRAFLDSCSVEFFFNDSIAFSFRI 110
>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 118
Score = 25.7 bits (56), Expect = 2.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 17 NSLDAGATSVEVKLKDYGSELVEVTDNGGGVHEDNY 52
++ AG + + ++ +E +DNG G +Y
Sbjct: 48 DTKGAGTGGLGLTVEGPCEAKIECSDNGDGTCSVSY 83
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 25.0 bits (54), Expect = 3.2
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 17 NSLDAGATSVEVKLKDYGSEL--VEVTDNGGGVHEDNYEGLTLKHHT 61
++ AG V + +V +N G ++ Y +
Sbjct: 29 DAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYV 75
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 23.9 bits (52), Expect = 6.0
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 57 LKHHTSKLREFTDLTSVETFGFRGEALSSLCALSSVVIVTR 97
L ++++ +F D V L L A +V R
Sbjct: 29 LLTRSNRMHDFEDSEQVV------HQLERLIARGLATLVPR 63
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 24.7 bits (53), Expect = 6.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 17 NSLDAGATSVEVKLKDYGSELVEVTDNGGGVHED 50
N +DA + + V L + V V + ++
Sbjct: 144 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTP 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,976
Number of extensions: 24708
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 16
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)