BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1367
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X74|A Chain A, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|B Chain B, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|C Chain C, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|D Chain D, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|2GCE|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2YIM|A Chain A, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|B Chain B, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|C Chain C, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|D Chain D, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
Length = 360
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 191/315 (60%), Gaps = 5/315 (1%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFV-QDTVGYGKKSLCINLKKA 61
L G+ V+E AG+ P P MIL + GA V+RID+ + + +D + ++ + +LK
Sbjct: 5 LSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSD 64
Query: 62 KGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMA 121
+GL + L ++DV++E +R GV E+L LGP+ K N RLIYAR++G+GQ GP S A
Sbjct: 65 QGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQA 124
Query: 122 GHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQVI 181
GHDINY + P PP NL DFGGG + +GI+ AL+ER SG+GQV+
Sbjct: 125 GHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVV 184
Query: 182 DCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQF 241
D MV+GS+ L + + T +W RG N+LDGGA +YDTYE DGR++AVGA+E QF
Sbjct: 185 DAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQF 244
Query: 242 YAQLLAGLGMTEEELPQHEVETG----RAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSL 297
YA +LAGLG+ ELP RA LTE F + W +F N+DACVTPVL+
Sbjct: 245 YAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAF 304
Query: 298 SQATSHPHNVHRGSF 312
+ + PH + R +F
Sbjct: 305 GEVHNEPHIIERNTF 319
>pdb|2G04|A Chain A, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|B Chain B, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|C Chain C, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|D Chain D, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|E Chain E, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|F Chain F, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
Length = 359
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 199/337 (59%), Gaps = 10/337 (2%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFV---QDTVGYGKKSLCINLK 59
L G+ V+E G+ P P GM+L + GA V+R+ + G +D + GK+ + +++K
Sbjct: 7 LAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVK 66
Query: 60 KAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSS 119
M LA ++DV+L+ FR G E+L +GPD NPRLI+AR++G+GQDGP +S
Sbjct: 67 TQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS 124
Query: 120 MAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQ 179
AGHDINY + +R P PP NL ADFGGG ++ LGIV+AL+ER +SG GQ
Sbjct: 125 TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ 184
Query: 180 VIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALES 239
V+D MV+G + L + + R LLDGGA FY YET DG++MAVGA+E
Sbjct: 185 VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP 244
Query: 240 QFYAQLLAGLGMTEEELPQHEVETGRAKL----TEKFKEKTQAEWCEIFDNTDACVTPVL 295
QF+A LL+GLG++ ++P G ++ E+F +T+ EW +F TDACVTPVL
Sbjct: 245 QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL 304
Query: 296 SLSQATSHPHNVHRGSFIPNRAGVVXXXXXXRLSRTP 332
+ S+A ++ H R + I GV R SRTP
Sbjct: 305 AWSEAANNDHLKARSTVI-TAHGVQQAAPAPRFSRTP 340
>pdb|3UBM|A Chain A, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|B Chain B, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|C Chain C, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|D Chain D, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
Length = 456
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 167/428 (39%), Gaps = 75/428 (17%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L GI V++F G+ P +L +GA VI+I++ G ++ +
Sbjct: 31 LDGIKVIDFGGVQSVPSAAQLLAWYGADVIKIERVGVGDITRNQLRDIPDADALYFTMLN 90
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K +G +V + +D++LE FR G ME++ + L + NPRLIY +
Sbjct: 91 CNKRSVELNTKTPEGKAVFEKCIKWADILLENFRPGAMERMGFTWEYLQQLNPRLIYGTV 150
Query: 109 SGYGQDGPYSSMAGHDINYXXXXXXXXXXXWRNRNP----------TPPCNLAADFGGG- 157
G+G++ P++ ++ ++ + N P P AA G
Sbjct: 151 KGFGENSPWAGVSAYENVAQCAGGATSTTGYWNGAPLVDGQAPGNNNGPLVSAAALGDSN 210
Query: 158 -GLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDT-----FLWDKPRGE 211
G +G++ ALF R ++G+GQ I +M + L R Q +L + P+
Sbjct: 211 TGNHLLIGVLAALFGRERTGKGQKISVSMQDAVLNLCRVKLRDQQRLERVGYLEEYPQYP 270
Query: 212 NLLDGGAHFYDT---------------------YETKDGRFMAVGALESQFYAQLLAGLG 250
N F DT +ET D ++ ++ Q + +G
Sbjct: 271 N-----GKFGDTVPRGGNAGGGGQPGWILKCKGWETDDNAYIYC-TVQEQDWGPTCEAIG 324
Query: 251 MTEEEL-PQHEVETGR--------AKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQAT 301
E P++ R A + + +KT+ E +PVLS+ +
Sbjct: 325 KPEWATDPKYNTAKARETHMFEIFAAIEKAIADKTKYEAVAHLAKYRVPCSPVLSMKEIA 384
Query: 302 SHPHNVHRGSFI----PNRAGVVXXXXXXRLSRTPGTSKITEHNPAPGVHTREVLRHFGY 357
P G+ + P R G + S G + + P G HT EVL GY
Sbjct: 385 EAPDLRESGTIVEVQQPKR-GTFLTINPIKFS---GFTPEIKAAPLLGQHTDEVLAELGY 440
Query: 358 SDANIEEL 365
S I+ L
Sbjct: 441 SAEEIKSL 448
>pdb|4ED9|A Chain A, Crystal Structure Of A CaibBAIF FAMILY PROTEIN FROM
BRUCELLA SUIS
Length = 385
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 134/303 (44%), Gaps = 32/303 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRID-------KHGAQPFV----QDTVGY-- 49
L G+ V+E A + P+ G L + GA VI+++ + PF+ + + Y
Sbjct: 10 LDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERSAAYFH 69
Query: 50 ----GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIY 105
GK+S+ + + +G +++ L ++DV++E F+ G ++K L + L NP+LIY
Sbjct: 70 ACNRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQLIY 129
Query: 106 ARLSGYGQDGPYSSMAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGI 165
++G+G GPY+ AG+D +R P AD GL + I
Sbjct: 130 CSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADI-FTGLYSVIAI 188
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAH----FY 221
AL R+++G+GQ ID + + + L +L + + G AH Y
Sbjct: 189 QSALIMRARTGKGQHIDMALFD---CMSGVLANQAMNYLASGKSPKRM--GNAHPNIAPY 243
Query: 222 DTYETKDGRFMAVGALESQF-YAQLLAGLG--MTEEELPQHEVETG-RAKLTEKFKEKTQ 277
T DG F+ + QF L G+G +E + RA LT +E+T+
Sbjct: 244 QTLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTK 303
Query: 278 AEW 280
+W
Sbjct: 304 -QW 305
>pdb|1Q6Y|A Chain A, Hypothetical Protein Yfdw From E. Coli Bound To Coenzyme A
Length = 428
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 165/423 (39%), Gaps = 63/423 (14%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 7 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 66
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 67 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 126
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGGG--GLMCALGI 165
G+ + PY ++ ++ + W PP AA G G+ +G+
Sbjct: 127 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWDG----PPLVSAAALGDSNTGMHLLIGL 182
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDT-----FLWDKPRGENLLDGGAHF 220
+ AL R K+GRGQ + +M + L R Q +L + P+ N G A
Sbjct: 183 LAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 242
Query: 221 YDT----------------YETKDGRFMAVGALESQFYAQLLAGLGMTEEELPQHEVETG 264
+ET ++ ++ Q + +G E + T
Sbjct: 243 RGGNAGGGGQPGWILKCKGWETDPNAYIYF-TIQEQNWENTCKAIG-KPEWITDPAYSTA 300
Query: 265 RAKLTEKFKEKTQAE-WCEIFDNTDACV---------TPVLSLSQATSHPHNVHRGSFI- 313
A+ F + E + D +A PVLS+ + + P GS +
Sbjct: 301 HARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVE 360
Query: 314 ---PNRAGVVXXXXXXRLSR-TPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELIRED 369
P R + + S TP P G HT VL+ GYSD I + +
Sbjct: 361 VEQPLRGKYLTVGCPMKFSAFTPDIKAA----PLLGEHTAAVLQELGYSDDEIAAMKQNH 416
Query: 370 VIE 372
IE
Sbjct: 417 AIE 419
>pdb|1PT5|A Chain A, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT5|B Chain B, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT7|A Chain A, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT7|B Chain B, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT8|A Chain A, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
pdb|1PT8|B Chain B, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
Length = 437
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQ--------------DTVG 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 26 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 85
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 86 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 145
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGGG--GLMCALGI 165
G+ + PY ++ ++ + W PP AA G G+ +G+
Sbjct: 146 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWDG----PPLVSAAALGDSNTGMHLLIGL 201
Query: 166 VMALFERSKSGRGQVIDCNM 185
+ AL R K+GRGQ + +M
Sbjct: 202 LAALLHREKTGRGQRVTMSM 221
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 94/434 (21%), Positives = 170/434 (39%), Gaps = 75/434 (17%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVI-----------------DCNMVEGSAYLGSWLTRTQDTFLWDK- 207
+ AL R K+GRGQ + D +E + L + + Q F +D+
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEY-PQAQPNFAFDRD 239
Query: 208 ------------PRGENLLDGGAHFY----DTYETKDGRFMAVGALESQFYAQLLAGLGM 251
PRG N G + +ET ++ + + + Q+ +
Sbjct: 240 GNPLSFDNITSVPRGGNAGGAGQPGWMLKCKGWETDADSYVYF-TIAANMWPQICDMIDK 298
Query: 252 TE-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATS 302
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 PEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAH 358
Query: 303 HPHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGY 357
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 DPSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGL 414
Query: 358 SDANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DDAKIKELHAKQVV 428
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 166/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F +A P C ++ GA VI+I++ G+ + ++QD
Sbjct: 5 LDGINVLDFTHVAAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + F+QD
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGFLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEMRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGG--GGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGASNSGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 180 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 239
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 240 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 298
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 358
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 414
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DAKIKELHAKQVV 427
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGXSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGG--GGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGSSNSGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 180 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 239
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 240 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 298
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 358
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 414
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DAKIKELHAKQVV 427
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQDT----------VG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 180 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 239
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 240 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 298
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 358
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 414
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DAKIKELHAKQVV 427
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQD----------TVG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQDT----------VG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGXSNSGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 180 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 239
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 240 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 298
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 358
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 414
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DAKIKELHAKQVV 427
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQDT----------VG 48
L GI VL+F + P C ++ GA VI+I++ G+ + ++QD
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGESNSGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 180 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 239
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 240 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 298
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 299 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 358
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 359 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 414
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 415 DAKIKELHAKQVV 427
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/433 (21%), Positives = 165/433 (38%), Gaps = 73/433 (16%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQ---------DTVGY---- 49
L GI VL+F + P C ++ GA VI+I++ G+ + D++ +
Sbjct: 5 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGQLQDKPNVDSLYFTMFN 64
Query: 50 -GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 65 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 124
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFG--GGGLMCALGI 165
GY + + ++ + W PP A G G+ +GI
Sbjct: 125 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDG----PPTVSGAALGDSNSGMHLMIGI 180
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF-----LWDKPRGENLL----DG 216
+ AL R K+GRGQ + M + L R Q L + P+ + DG
Sbjct: 181 LAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDG 240
Query: 217 GAHFYDT------------------------YETKDGRFMAVGALESQFYAQLLAGLGMT 252
+D +ET D + + + Q+ +
Sbjct: 241 NPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWET-DADSYVYFTIAANMWPQICDMIDKP 299
Query: 253 E-EELPQHEVETGRAK--------LTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSH 303
E ++ P + GR + KF +K + E E PV+S+ +
Sbjct: 300 EWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHD 359
Query: 304 PHNVHRGSFIPNRAGVVXXXXXXRLS-----RTPGTSKITEHNPAPGVHTREVLRHFGYS 358
P G+ + VV L+ + G P G HT EVL+ G
Sbjct: 360 PSLQKVGTVVE----VVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLD 415
Query: 359 DANIEELIREDVI 371
DA I+EL + V+
Sbjct: 416 DAKIKELHAKQVV 428
>pdb|1Q7E|A Chain A, Crystal Structure Of Yfdw Protein From E. Coli
Length = 428
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQ--------------DTVG 48
L+GI VL+F G+ P C L FGA VI+I++ G + +
Sbjct: 7 LQGIKVLDFTGVQSGPSCTQXLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTXLN 66
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G V + L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 67 SNKRSIELNTKTAEGKEVXEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 126
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGL--MCALGI 165
G+ + PY ++ ++ + W PP AA G +G+
Sbjct: 127 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWDG----PPLVSAAALGDSNTGXHLLIGL 182
Query: 166 VMALFERSKSGRGQVI 181
+ AL R K+GRGQ +
Sbjct: 183 LAALLHREKTGRGQRV 198
>pdb|1PQY|A Chain A, Crystal Structure Of Formyl-Coa Transferase Yfdw From E.
Coli
Length = 428
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQ--------------DTVG 48
L+GI VL+F G+ P C L FGA VI+I++ G + +
Sbjct: 7 LQGIKVLDFTGVQSGPSCTQXLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTXLN 66
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G V + L ++D+++E F G ++ + + + NPRLI+ +
Sbjct: 67 SNKRSIELNTKTAEGKEVXEKLIREADILVENFHPGAIDHXGFTWEHIQEINPRLIFGSI 126
Query: 109 SGYGQDGPYSSMAGHD-INYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGL--MCALGI 165
G+ + PY ++ ++ + W PP AA G +G+
Sbjct: 127 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWDG----PPLVSAAALGDSNTGXHLLIGL 182
Query: 166 VMALFERSKSGRGQVI 181
+ AL R K+GRGQ +
Sbjct: 183 LAALLHREKTGRGQRV 198
>pdb|1XVU|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Coenzyme A
pdb|1XVV|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Carnitinyl-Coa
Length = 408
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 157/398 (39%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 15 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 73
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 74 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 133
Query: 116 P--YSSMAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ P P A + G + R
Sbjct: 134 TEEYTNLPAYN-TIAQAFSGYLIQNGDVDQPMPAFPYTAAYFSGLTATTAALAALHKVR- 191
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 192 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 244
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 245 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 303
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVXXXXXXRL 328
T AE E F + VL++ + S+P V R S + +
Sbjct: 304 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 363
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 364 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 399
>pdb|1XK6|A Chain A, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|B Chain B, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|C Chain C, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|D Chain D, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
Length = 408
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 33/391 (8%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G E+GA VI I D QP +L
Sbjct: 15 LAGLRVV-FSGIEIAGPFAGQXFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 73
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 74 LNIFKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 133
Query: 116 P--YSSMAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ P P AD+ G + R
Sbjct: 134 TEEYTNLPAYN-TIAQAFSGYLIQNGDVDQPXPAFPYTADYFSGLTATTAALAALHKVR- 191
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDG---- 229
++G+G+ ID E G + PR D Y+ DG
Sbjct: 192 ETGKGESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVX 251
Query: 230 RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----FKEKTQAE 279
+ + +E F LA L + E+P+ H +E L E+ T AE
Sbjct: 252 ELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAE 310
Query: 280 WCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRAG----VVXXXXXXRLSRTPGTS 335
E F + VL++ + S+P V R S + + PG
Sbjct: 311 VKERFAELNIACAKVLTVPELESNPQYVARESITQWQTXDGRTCKGPNIXPKFKNNPG-- 368
Query: 336 KITEHNPAPGVHTREVLRHFGYSDANIEELI 366
+I P+ G T +L++ GYS+ +I+EL+
Sbjct: 369 QIWRGXPSHGXDTAAILKNIGYSENDIQELV 399
>pdb|1XA3|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA3|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
Length = 437
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 33/391 (8%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G E+GA VI I D QP +L
Sbjct: 36 LAGLRVV-FSGIEIAGPFAGQXFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 94
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 95 LNIFKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 154
Query: 116 P--YSSMAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ P P AD+ G + R
Sbjct: 155 TEEYTNLPAYN-TIAQAFSGYLIQNGDVDQPXPAFPYTADYFSGLTATTAALAALHKVR- 212
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDG---- 229
++G+G+ ID E G + PR D Y+ DG
Sbjct: 213 ETGKGESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVX 272
Query: 230 RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----FKEKTQAE 279
+ + +E F LA L + E+P+ H +E L E+ T AE
Sbjct: 273 ELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAE 331
Query: 280 WCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRAG----VVXXXXXXRLSRTPGTS 335
E F + VL++ + S+P V R S + + PG
Sbjct: 332 VKERFAELNIACAKVLTVPELESNPQYVARESITQWQTXDGRTCKGPNIXPKFKNNPG-- 389
Query: 336 KITEHNPAPGVHTREVLRHFGYSDANIEELI 366
+I P+ G T +L++ GYS+ +I+EL+
Sbjct: 390 QIWRGXPSHGXDTAAILKNIGYSENDIQELV 420
>pdb|1XK7|A Chain A, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|B Chain B, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|C Chain C, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XVT|A Chain A, Crystal Structure Of Native Caib In Complex With Coenzyme
A
Length = 408
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 33/391 (8%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G E+GA VI I D QP +L
Sbjct: 15 LAGLRVV-FSGIEIAGPFAGQXFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 73
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 74 LNIFKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 133
Query: 116 P--YSSMAGHDINYXXXXXXXXXXXWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ P P AD+ G + R
Sbjct: 134 TEEYTNLPAYN-TIAQAFSGYLIQNGDVDQPXPAFPYTADYFSGLTATTAALAALHKVR- 191
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDG---- 229
++G+G+ ID E G + PR D Y+ DG
Sbjct: 192 ETGKGESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVX 251
Query: 230 RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----FKEKTQAE 279
+ + +E F LA L + E+P+ H +E L E+ T AE
Sbjct: 252 ELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAE 310
Query: 280 WCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRAG----VVXXXXXXRLSRTPGTS 335
E F + VL++ + S+P V R S + + PG
Sbjct: 311 VKERFAELNIACAKVLTVPELESNPQYVARESITQWQTXDGRTCKGPNIXPKFKNNPG-- 368
Query: 336 KITEHNPAPGVHTREVLRHFGYSDANIEELI 366
+I P+ G T +L++ GYS+ +I+EL+
Sbjct: 369 QIWRGXPSHGXDTAAILKNIGYSENDIQELV 399
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1)
Pyruvate Kinase, At A Resolution Of 2.6 Angstroms
Length = 530
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 148 CNLAADFGGGGLMCALGIVMALFERSKSGRGQ-------VID---CNMVEGSAYLGSW-- 195
CN A G ++CA ++ ++ ++ + R + V+D C M+ G G +
Sbjct: 316 CNRA----GKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPL 371
Query: 196 --------LTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQFYAQLLA 247
+ R + ++ + E L+ G +H D E MA+G++E+ + A
Sbjct: 372 EAVRMQHLIAREAEAAMFHRKLFEELVRGSSHSTDLMEA-----MAMGSVEASYKCLAAA 426
Query: 248 GLGMTEEELPQHEVETGRAK 267
+ +TE H+V R +
Sbjct: 427 LIVLTESGRSAHQVARYRPR 446
>pdb|2OKT|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Ligand-Free Form
pdb|2OLA|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Cubic Crystal Form
Length = 342
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 70 LANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINY 127
L N V+L+PFR G ++K+Q D L +++ + YG +++M +Y
Sbjct: 235 LYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKGDY 292
>pdb|3H70|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus Complexed With Mg In The
Active Site
Length = 343
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 70 LANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINY 127
L N V+L+PFR G ++K+Q D L +++ + YG +++M +Y
Sbjct: 236 LYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKGDY 293
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCI 56
M L+ + L + + PA M + +FG +IRID + D Y +KS CI
Sbjct: 272 MKLEAVDPLNLSSICPATV--MAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCI 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,473,268
Number of Sequences: 62578
Number of extensions: 468584
Number of successful extensions: 981
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 44
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)