BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1367
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O09174|AMACR_MOUSE Alpha-methylacyl-CoA racemase OS=Mus musculus GN=Amacr PE=1 SV=4
Length = 381
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/376 (55%), Positives = 275/376 (73%), Gaps = 7/376 (1%)
Query: 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK 60
M L+G+ V+E AGLAP PFCGM+L +FGA V+R+++ G+ ++ + GK+SL ++LK+
Sbjct: 1 MVLRGVRVVELAGLAPGPFCGMVLADFGAEVVRVNRLGSTG--ENFLARGKRSLALDLKR 58
Query: 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSM 120
++G++V++ + ++DV+LEPFR GVMEKLQLGP+ L + NP+LIYARLSG+GQ G +S +
Sbjct: 59 SQGVTVLRRMCARADVLLEPFRCGVMEKLQLGPETLLQDNPKLIYARLSGFGQSGIFSKV 118
Query: 121 AGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQV 180
AGHDINYL LSG+LS +G NP PP NL ADFGGGGLMC LGIV+ALFER++SGRGQV
Sbjct: 119 AGHDINYLALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGIVLALFERTRSGRGQV 178
Query: 181 IDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQ 240
ID +MVEG+AYL S+L +TQ LW +PRG+N+LDGGA FY TY+T DG FMAVGA+E Q
Sbjct: 179 IDSSMVEGTAYLSSFLWKTQPMGLWKQPRGQNILDGGAPFYTTYKTADGEFMAVGAIEPQ 238
Query: 241 FYAQLLAGLGMTEEELPQHEVETG----RAKLTEKFKEKTQAEWCEIFDNTDACVTPVLS 296
FYA LL GLG+ EELP + K + F +KT+AEWC+IFD TDACVTPVL+
Sbjct: 239 FYALLLKGLGLESEELPSQMSSADWPEMKKKFADVFAKKTKAEWCQIFDGTDACVTPVLT 298
Query: 297 LSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFG 356
+A H HN R SFI + + +P PAP LSRTP + +P+ G HT EVLR +G
Sbjct: 299 FEEALHHQHNRERASFITDGEQLPSPRPAPLLSRTPAVPS-AKRDPSVGEHTVEVLREYG 357
Query: 357 YSDANIEELIREDVIE 372
+S I +L + ++E
Sbjct: 358 FSQEEILQLHSDRIVE 373
>sp|Q9UHK6|AMACR_HUMAN Alpha-methylacyl-CoA racemase OS=Homo sapiens GN=AMACR PE=1 SV=2
Length = 382
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/376 (54%), Positives = 270/376 (71%), Gaps = 6/376 (1%)
Query: 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK 60
MAL+GI+V+E +GLAP PFC M+L +FGA V+R+D+ G++ + +G GK+SL ++LK+
Sbjct: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSR-YDVSRLGRGKRSLVLDLKQ 59
Query: 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSM 120
+G +V++ L +SDV+LEPFR+GVMEKLQLGP++L + NPRLIYARLSG+GQ G + +
Sbjct: 60 PRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRL 119
Query: 121 AGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQV 180
AGHDINYL LSG+LS +G NP P NL ADF GGGLMCALGI+MALF+R+++G+GQV
Sbjct: 120 AGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQV 179
Query: 181 IDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQ 240
ID NMVEG+AYL S+L +TQ LW+ PRG+N+LDGGA FY TY T DG FMAVGA+E Q
Sbjct: 180 IDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQ 239
Query: 241 FYAQLLAGLGMTEEELPQH----EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLS 296
FY L+ GLG+ +ELP + + K + F EKT+AEWC+IFD TDACVTPVL+
Sbjct: 240 FYELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLT 299
Query: 297 LSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFG 356
+ H HN RGSFI + V+P PAP L TP + +P G HT E+L FG
Sbjct: 300 FEEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSF-KRDPFIGEHTEEILEEFG 358
Query: 357 YSDANIEELIREDVIE 372
+S I +L + +IE
Sbjct: 359 FSREEIYQLNSDKIIE 374
>sp|P70473|AMACR_RAT Alpha-methylacyl-CoA racemase OS=Rattus norvegicus GN=Amacr PE=1
SV=3
Length = 382
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/376 (56%), Positives = 272/376 (72%), Gaps = 6/376 (1%)
Query: 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK 60
MAL+G+ VLE AGLAP PFCGMIL +FGA V+ +D+ G+ + GK+SL ++LK+
Sbjct: 1 MALRGVRVLELAGLAPGPFCGMILADFGAEVVLVDRLGSVNH-PSHLARGKRSLALDLKR 59
Query: 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSM 120
+ G +V++ + ++DV+LEPFR GVMEKLQLGP+ L + NP+LIYARLSG+GQ G +S +
Sbjct: 60 SPGAAVLRRMCARADVLLEPFRCGVMEKLQLGPETLRQDNPKLIYARLSGFGQSGIFSKV 119
Query: 121 AGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQV 180
AGHDINY+ LSG+LS +G NP PP NL ADFGGGGLMC LGI++ALFER++SG GQV
Sbjct: 120 AGHDINYVALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGILLALFERTRSGLGQV 179
Query: 181 IDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQ 240
ID NMVEG+AYL ++L +TQ LW +PRG+NLLDGGA FY TY+T DG FMAVGA+E Q
Sbjct: 180 IDANMVEGTAYLSTFLWKTQAMGLWAQPRGQNLLDGGAPFYTTYKTADGEFMAVGAIEPQ 239
Query: 241 FYAQLLAGLGMTEEELP-QHEVETG---RAKLTEKFKEKTQAEWCEIFDNTDACVTPVLS 296
FY LL GLG+ EELP Q +E + K + F KT+AEWC+IFD TDACVTPVL+
Sbjct: 240 FYTLLLKGLGLESEELPSQMSIEDWPEMKKKFADVFARKTKAEWCQIFDGTDACVTPVLT 299
Query: 297 LSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFG 356
L +A H HN RGSFI + P PAP+LSRTP + +P+ G HT EVL+ +G
Sbjct: 300 LEEALHHQHNRERGSFITDEEQHACPRPAPQLSRTPAVPS-AKRDPSVGEHTVEVLKDYG 358
Query: 357 YSDANIEELIREDVIE 372
+S I +L + +IE
Sbjct: 359 FSQEEIHQLHSDRIIE 374
>sp|Q8J0F0|CEFD2_ACRCH Isopenicillin N epimerase component 2 OS=Acremonium chrysogenum
GN=cefD2 PE=3 SV=1
Length = 383
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/300 (50%), Positives = 203/300 (67%), Gaps = 9/300 (3%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAK 62
L G V+E AGLAP PFCGM+L ++GA+V+RID G + D + K S+CI+LK
Sbjct: 9 LSGKLVVELAGLAPGPFCGMLLADYGASVLRID--GPRSPKGDVLARNKSSICIDLKHPP 66
Query: 63 GLSVMKNLANQSDVILEPFRKGVMEKLQLGP-DVLCKSNPRLIYARLSGYGQDGPYSSMA 121
V+ ++ +++DV+++PFR GV+E+L L P +VL K+N RL+ ARL+G+ +DG Y MA
Sbjct: 67 SRKVLLSILSRADVLIDPFRPGVLERLGLSPTEVLLKANARLVVARLTGFRRDGKYQDMA 126
Query: 122 GHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQVI 181
GHDINYL +SG+L++LG NP PP N+ DF GGG MC +GI++AL R +G GQV+
Sbjct: 127 GHDINYLAVSGVLAMLGRAGENPFPPANILGDFAGGGAMCVVGILLALVSRDATGLGQVV 186
Query: 182 DCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKD--GRFMAVGALES 239
+ NMV+GSAYL + T W PRGEN+LDGG +Y TY TKD G++MAVGALE
Sbjct: 187 EANMVDGSAYLATMPRLATKTPFWGSPRGENVLDGGCPWYATYRTKDPGGKYMAVGALEP 246
Query: 240 QFYAQLLAGLGMTEEELPQHEVETG----RAKLTEKFKEKTQAEWCEIFDNTDACVTPVL 295
FY L+ GLG+ + +LP E RA KF E+T++EW E+FD TDACVTPVL
Sbjct: 247 HFYEVLVRGLGLDKTDLPPREDRANWPRLRALFEAKFAERTRSEWAEVFDGTDACVTPVL 306
>sp|Q09618|YS74_CAEEL CaiB/baiF CoA-transferase family protein ZK892.4 OS=Caenorhabditis
elegans GN=ZK892.4 PE=3 SV=3
Length = 340
Score = 234 bits (597), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 191/332 (57%), Gaps = 15/332 (4%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAK 62
L GI V+E AGLAP P CGM+L +FGA V IDK P ++ + GK ++LK +
Sbjct: 5 LSGIKVVEIAGLAPVPHCGMMLADFGADVTVIDKK--NPAIEQRLNRGKTMKQLDLKNPE 62
Query: 63 GLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAG 122
+ +++L SDV+L+P+R G +EK+ L P L +N LI ++SGYGQ G S G
Sbjct: 63 DIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLIICKISGYGQTGRMSQETG 122
Query: 123 HDINYLGLSGIL-SLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKS-GRGQV 180
HDINY+ LSG+L + G P PP N+ ADF GGGL A GI+ A++ RS + G+G +
Sbjct: 123 HDINYVALSGMLPTFSGVNATRPWPPANMLADFAGGGLSAAFGILSAIYARSHNGGKGCL 182
Query: 181 IDCNMVEGSAYLGSWLTRTQD--TFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALE 238
+DC+M EG AYL S++ D DK L G Y TY+TKD +F+AVGA+E
Sbjct: 183 LDCSMTEGVAYLSSFVQHYYDQPNLFTDK---YALFSGECPIYRTYKTKDDKFVAVGAVE 239
Query: 239 SQFYAQLLAGLGMTEEELPQHEVETGR--AKLTEKFKEKTQAEWCEIFDNTDACVTPVLS 296
+FY L L + +L V G+ L +F +KT+ +W IF + CVTPVL
Sbjct: 240 PKFYQNLFKLLNVDGRDL---FVNPGKITEDLESRFLQKTRDKWANIFKGQECCVTPVLD 296
Query: 297 LSQATSHPHNVHRGSFIPNRAGVVAPAPAPRL 328
+ + S+ +V R SF + +A P+PR+
Sbjct: 297 IHEVGSYGQHVDRNSFTKTSSNWIA-NPSPRV 327
>sp|Q7TNE1|CG010_MOUSE CaiB/baiF CoA-transferase family protein C7orf10 homolog OS=Mus
musculus PE=2 SV=2
Length = 436
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 197/406 (48%), Gaps = 47/406 (11%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--------QPFVQD------TVG 48
L+G+ +L+ + PF M L + GA VI++++ GA PFV +V
Sbjct: 39 LEGVRILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVN 98
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
KKS+ +N+K +G+ ++K LA DV +E + G + ++ LG + + K P +IY +
Sbjct: 99 RNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYEDIDKIAPHIIYCSI 158
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMA 168
+GYGQ GP S AG+D +SG++ + G + +P P D G + A G +MA
Sbjct: 159 TGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG--LFAYGAIMA 216
Query: 169 -LFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHF----YDT 223
L +R ++G+G IDCN++ + LT+ +L + + G AH Y
Sbjct: 217 GLLQRYRTGKGLFIDCNLLSSQV---ACLTQVAANYLIGQKEAKRW--GTAHGSIVPYQA 271
Query: 224 YETKDGRFMAVGALESQFYAQLLAGLGMTE-----EELPQHEVETGRAKLTE----KFKE 274
++TKDG ++ +GA +Q +A + L + E + H R +L + +F E
Sbjct: 272 FKTKDG-YLVIGAGNNQQFAVVCKILNLPELIDDCKYRTNHLRVQNRKELVKILSARFAE 330
Query: 275 KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----PNRAGVVAPAPAPRLSR 330
+ A+W +F+ + P+ SL S +H G + P + P PA R S+
Sbjct: 331 EVTAKWLCLFEGSGIPYGPINSLKDVFSEAQVLHNGLVMEMNHPTVGKISVPGPAVRYSK 390
Query: 331 TPGTSKITEHNPAP--GVHTREVLRH-FGYSDANIEELIREDVIEE 373
K++E P P G HTR +L+ Y + IE+L+ VIE+
Sbjct: 391 F----KMSEAKPPPLLGQHTRHILKEVLRYDEGAIEKLLCSGVIEQ 432
>sp|Q9HAC7|CG010_HUMAN CaiB/baiF CoA-transferase family protein C7orf10 OS=Homo sapiens
GN=C7orf10 PE=1 SV=2
Length = 445
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 194/407 (47%), Gaps = 49/407 (12%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--------QPFVQD------TVG 48
L+G+ +L+ + PF M L + GA VI++++ GA PFV +V
Sbjct: 48 LEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVN 107
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
KKS+ +N+K KG+ ++K LA DV +E + G + + LG + + + P +IY +
Sbjct: 108 RNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSAMGLGYEDIDEIAPHIIYCSI 167
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMA 168
+GYGQ GP S AG+D +SG++ + G N +P P D G + A G +MA
Sbjct: 168 TGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATG--LYAYGAIMA 225
Query: 169 -LFERSKSGRGQVIDCNMVEG-----SAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYD 222
L ++ K+G+G IDCN++ S ++L ++ W G + Y
Sbjct: 226 GLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVP------YQ 279
Query: 223 TYETKDGRFMAVGALESQFYAQLLAGLGMTE---------EELPQHEVETGRAKLTEKFK 273
++TKDG ++ VGA +Q +A + L + E L H + L+E+F+
Sbjct: 280 AFKTKDG-YIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFE 338
Query: 274 EKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----PNRAGVVAPAPAPRLS 329
E+ ++W +F+ + P+ ++ + P +H G + P + P PA R S
Sbjct: 339 EELTSKWLYLFEGSGVPYGPINNMKNVFAEPQVLHNGLVMEMEHPTVGKISVPGPAVRYS 398
Query: 330 RTPGTSKITEHNPAP--GVHTREVLRH-FGYSDANIEELIREDVIEE 373
+ K++E P P G HT +L+ Y D I EL+ V+++
Sbjct: 399 KF----KMSEARPPPLLGQHTTHILKEVLRYDDRAIGELLSAGVVDQ 441
>sp|Q68FU4|CG010_RAT CaiB/baiF CoA-transferase family protein C7orf10 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 436
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 195/406 (48%), Gaps = 47/406 (11%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--------QPFVQD------TVG 48
L+G+ +L+ + PF M L + GA VI++++ GA PFV +V
Sbjct: 39 LEGVRILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVN 98
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
KKS+ +N+K +G+ ++K LA DV +E + G + ++ LG + K P ++Y +
Sbjct: 99 RNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYADIDKIAPHIVYCSI 158
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMA 168
+GYGQ GP S AG+D +SG++ + G + +P P D G + A G +MA
Sbjct: 159 TGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG--LFAYGAIMA 216
Query: 169 -LFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHF----YDT 223
L +R ++G+G IDCN++ + LT+ +L + + G AH Y
Sbjct: 217 GLIQRYRTGKGLFIDCNLLSSQV---ACLTQVAANYLIGQKEAKRW--GTAHGSIVPYQA 271
Query: 224 YETKDGRFMAVGALESQFYAQLLAGLGMTE-----EELPQHEVETGRAKLTE----KFKE 274
++TKDG ++ +GA +Q +A L L + E + H R +L + +F E
Sbjct: 272 FKTKDG-YLVIGAGNNQQFAVLCKILNLPELIDDSKYRTNHLRVQNRKELVKILSARFAE 330
Query: 275 KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----PNRAGVVAPAPAPRLSR 330
+ A+W +F+ + P+ SL S +H G + P + P PA R S+
Sbjct: 331 EVTAKWLCLFEGSGIPYGPINSLKDVFSEAQVLHNGLVMEMNHPTVGKISVPGPAVRYSK 390
Query: 331 TPGTSKITEHNPAP--GVHTREVLRH-FGYSDANIEELIREDVIEE 373
K++E P P G HTR +L+ Y + I EL+ VIE+
Sbjct: 391 F----KMSEAKPPPLLGQHTRHILKEVLRYDEGVIGELLCSGVIEQ 432
>sp|Q139H7|FCTA_RHOPS Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
BisB5) GN=frc PE=3 SV=1
Length = 425
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 175/414 (42%), Gaps = 57/414 (13%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGTGDITRGQLQDIPKVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ D + + NPR+I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTALIRSCDVLVENFGPGVLDRMGFTWDKIQEINPRMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGI 165
+ G+G GPY ++ G S G+R+ PP A G G GL ALGI
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRD---GPPLVTGAQIGDSGTGLHLALGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYE 225
V AL++R +GRGQ + M +G L R Q + + G F D
Sbjct: 180 VTALYQRQHTGRGQRVTAAMQDGVLNLSRVKLRDQQRLAHGPLKEYSQFGEGIPFGDAVP 239
Query: 226 T--------KDGRFMAVGALESQ------------FYAQLLAGLGMTE-EELPQHEVETG 264
+ GR + E+ + ++ +G T + P +
Sbjct: 240 RAGNDSGGGQPGRILKCKGWETDPNAYIYFITQAPVWEKICDVIGETGWKTHPDYATPPA 299
Query: 265 R--------AKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI--- 313
R A++ + KT+ E +I ++ D P+LS+ + P G+ +
Sbjct: 300 RLKHLNDIFARIEQWTMTKTKFEAMDILNSDDIPCGPILSMKELAEDPSLRATGTVVEVD 359
Query: 314 -PNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
P R ++ +LS +P K +P G HT EVLR G++D I E+
Sbjct: 360 HPTRGKYLSVGNPIKLSDSPTEVK---RSPLLGEHTDEVLREVLGFNDHQIAEI 410
>sp|P76518|YFDE_ECOLI Uncharacterized protein YfdE OS=Escherichia coli (strain K12)
GN=yfdE PE=3 SV=2
Length = 381
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 159/370 (42%), Gaps = 40/370 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG-------------AQPFVQDTVGY 49
+G+ V++ + PF +L GA VI+++ G Q + +
Sbjct: 10 FEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINH 69
Query: 50 GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109
GK+S+ ++LK S+ N+ Q+DV+ E FR G MEKL + L + NPRLIYA S
Sbjct: 70 GKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSS 129
Query: 110 GYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMAL 169
G+G GP +D +SGI+ G+ + P AD GG + + GIV AL
Sbjct: 130 GFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFS-GIVSAL 188
Query: 170 FERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFY----DTYE 225
+ R KS RG +D M + + S+L ++ + L G H Y D +
Sbjct: 189 YGREKSQRGAHVDIAMFDATL---SFLEHGLMAYIATGKSPQRL--GNRHPYMAPFDVFN 243
Query: 226 TKDGRFMAVGALESQFYAQLLAGLGMTE-EELPQHEVETGRAKLTEKFKE------KTQA 278
T+D + + + + ++ L L +TE P+ R + K+ KTQA
Sbjct: 244 TQD-KPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQA 302
Query: 279 E--WCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLS------R 330
W V P+LS+++A P R I G++ P ++S
Sbjct: 303 AEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLI-EAGGIMMPGNPIKISGCADPHV 361
Query: 331 TPGTSKITEH 340
PG + + +H
Sbjct: 362 MPGAATLDQH 371
>sp|B3QBS6|FCTA_RHOPT Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
TIE-1) GN=frc PE=3 SV=1
Length = 425
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 174/412 (42%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ VL+F + P C +L FGA VI++++ G+ +QD +
Sbjct: 4 ALDGVRVLDFTHVQSGPTCTQLLAWFGADVIKVERPGSGDITRGQLQDIPKVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ + + + NPR+I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTALIRTCDVLVENFGPGVLDRMGFTWEKIQEINPRMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFREGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R +GRGQ + M +G L R Q + + G F D
Sbjct: 182 ALYQRHHTGRGQRVTAAMQDGVLNLCRVKLRDQQRLDHGPLKEYSQFGEGIPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGMTEEEL-PQHEVETGR- 265
+ GR + E + ++ +G T ++ P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWEQDPNAYIYVITQAPVWEKICDVIGETGWKMHPDYATPPARL 301
Query: 266 AKLTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
++L E F KT+ E EI + D P+LS+ + G+ + P
Sbjct: 302 SRLNEIFARIEQWTMTKTKFEAMEILNADDIPCGPILSMKELAEDQSLRATGTIVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P K +P G HT E+LR GYSDA++ E+
Sbjct: 362 TRGKYLSVGNPIKLSDSPTEVK---RSPLLGEHTDEILRDVLGYSDAHVAEI 410
>sp|Q2IUI7|FCTA_RHOP2 Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
HaA2) GN=frc PE=3 SV=1
Length = 425
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 174/414 (42%), Gaps = 57/414 (13%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGTGDITRGQLQDIPKVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ D + + NPR+I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTALIRSCDVLVENFGPGVLDRMGFTWDKIQEINPRMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGI 165
+ G+G GPY ++ G S G+R+ PP A G G GL ALGI
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRD---GPPLVTGAQIGDSGTGLHLALGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYE 225
V AL++R +GRGQ + M +G L R Q + + G F D
Sbjct: 180 VTALYQRHHTGRGQRVTAAMQDGVLNLSRVKLRDQQRLAHGPLKEYSQFGEGIPFGDAVP 239
Query: 226 T--------KDGRFMAVGALESQ------FYAQ------LLAGLGMTE-EELPQHEVETG 264
+ GR + E+ F AQ + +G T + P +
Sbjct: 240 RAGNDSGGGQPGRILKCKGWETDPNAYIYFIAQAPVWEKICDVIGETGWKTHPDYATPPA 299
Query: 265 R--------AKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI--- 313
R A++ + KT+ E +I + D P+LS+ + G+ +
Sbjct: 300 RLKHLNDIFARIEQWTMTKTKFEAMDILNRDDIPCGPILSMKELAEDASLRATGTIVEVD 359
Query: 314 -PNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
P R ++ +LS +P E +P G HT E+LR G++D + E+
Sbjct: 360 HPTRGKYLSVGNPIKLSDSPTH---VERSPLLGEHTDEILRDVLGFNDHQVAEI 410
>sp|Q6N8F8|FCTA_RHOPA Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=frc PE=3 SV=2
Length = 425
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 173/412 (41%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ VL+F + P C +L FGA VI++++ G+ +QD +
Sbjct: 4 ALDGVRVLDFTHVQSGPTCTQLLAWFGADVIKVERPGSGDITRGQLQDIPKVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ + + + NPR+I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTALIRTCDVLVENFGPGVLDRMGFTWEKIQEINPRMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFREGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R +GRGQ + M +G L R Q + + G F D
Sbjct: 182 ALYQRHHTGRGQRVTAAMQDGVLNLCRVKLRDQQRLDHGPLKEYSQFGEGIPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGMTE-EELPQHEVETGR- 265
+ GR + E + ++ +G T + P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWEQDPNAYIYVITQAPVWEKICDVIGETGWKTHPDYATPPARL 301
Query: 266 AKLTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
++L E F KT+ E EI + D P+LS+ + G+ + P
Sbjct: 302 SRLNEIFARIEQWTMTKTKFEAMEILNADDIPCGPILSMKELAEDQSLRATGTIVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P K +P G HT E+LR GYSDA++ E+
Sbjct: 362 TRGKYLSVGNPIKLSDSPTEVK---RSPLLGEHTDEILRDVLGYSDAHVAEI 410
>sp|Q55CV9|Y9880_DICDI CaiB/baiF CoA-transferase family protein DDB_G0269880
OS=Dictyostelium discoideum GN=DDB_G0269880 PE=3 SV=1
Length = 471
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 157/341 (46%), Gaps = 42/341 (12%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG--------AQPFVQDTVGY----- 49
L G +L+ + + P+ I + GA VI+++ G PF D G
Sbjct: 30 LNGFKILDLSRVLAGPYATQIFGDLGAQVIKVENVGKGDDTRQYGPPFYVDEQGRKGSAY 89
Query: 50 ------GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRL 103
KKS+ +++ +G ++ +LA +SDV +E F+ G ++K L + + + NP +
Sbjct: 90 FSCANRNKKSIALDISTKEGQDIVYSLAKESDVFIENFKVGGLKKYSLDYETIKQINPSI 149
Query: 104 IYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCAL 163
IY ++G+GQDG YS + G+D + + G++S+ G + NP C +A GL +
Sbjct: 150 IYCSITGFGQDGEYSKLPGYDFSVQAMGGLISITGDK-ENPY-KCGVAIVDMMTGLYANI 207
Query: 164 GIVMALF--ERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAH-- 219
I AL E+SK +GQ ID ++++ A S+L ++L E + G +H
Sbjct: 208 AIQAALHHREKSKDKKGQYIDVSLLDVQA---SFLANHGSSYLVTGETSERV--GNSHPS 262
Query: 220 --FYDTYETKDGRFMAVGALESQFYAQLLAGLGMTE-EELPQHEVETGR--------AKL 268
YD+ +TKDG FM V + + + LG+ P R + L
Sbjct: 263 ISPYDSLKTKDG-FMVVAIGNNTQFQSMCNVLGLPHLSTNPLFSTNPSRVLNRKQLLSIL 321
Query: 269 TEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHR 309
T + + + ++ +++ +P+ S+ + +H HR
Sbjct: 322 TNETLKFNTDDIVKLLGDSNVPCSPINSIDKVVNHKQIKHR 362
>sp|Q07Q82|FCTA_RHOP5 Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
BisA53) GN=frc PE=3 SV=1
Length = 425
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 174/417 (41%), Gaps = 63/417 (15%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQD----------TV 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGVGDITRGQLQDLPNVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ + + NP++I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTELIKTCDVLVENFGPGVLDRMGFPWEKIQSINPKMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGI 165
+ G+G GPY ++ G S G+R+ PP A G G GL ALGI
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRD---GPPLVTGAQIGDSGTGLHLALGI 179
Query: 166 VMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQD-----------TFLWDKPRGENLL 214
V AL++R+ +GRGQ + M +G L R Q F P GE +
Sbjct: 180 VTALYQRTTTGRGQRVTAAMQDGVLNLTRVKLRDQQRLAHGPLKEFSQFGEGIPFGEAVP 239
Query: 215 DGGAHFYDTYETKDGRFMAVGALES--QFYAQLLAGLGMTEE-----ELPQHEVETGRAK 267
G D+ + GR + ++ Y + + E+ P + AK
Sbjct: 240 RAGN---DSGGGQPGRILKCKGWQTDPNAYIYFITQAPVWEKICDVINEPDWKTHAEYAK 296
Query: 268 LTEKFKE--------------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI 313
+ K KT+ E +I + D P+LS+ + P G+ +
Sbjct: 297 PAARLKHLNSIFARIEEWTMTKTKFEAMDILNEYDIPCGPILSMKELAEDPSLRATGTVV 356
Query: 314 ----PNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
P R ++ +LS +P + +P G HT E+LR G+SD + E+
Sbjct: 357 EVEHPTRGKYLSVGNPIKLSDSPTD---VQRSPLLGEHTDEILRQVLGFSDHQVAEI 410
>sp|Q89QH2|FCTA_BRAJA Formyl-coenzyme A transferase OS=Bradyrhizobium japonicum (strain
USDA 110) GN=frc PE=3 SV=1
Length = 425
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 173/412 (41%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALTGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGVGDITRGQLQDIPNVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L + DV++E F GV++++ + + + NP++I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQQINPKMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R+ P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R+ SG+GQ + M +G L R Q R + G F D
Sbjct: 182 ALYQRTHSGKGQRVTAAMQDGVLNLARVKLRDQQRLAHGPLREYSQFGEGIPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGM-TEEELPQHEVETGR- 265
+ GR + E+ + ++ +G T + P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWETDPNAYIYFITQAPVWEKICDVIGEPTWKTDPNYAKPAARL 301
Query: 266 AKLTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
+L E F KT+ E EI + D P+LS+ + G+ + P
Sbjct: 302 PRLNEIFARIEQWTMTKTKFEAMEILNKDDIPCGPILSMKEIAEDQSLRATGTVVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P + +P G HT E+LR G+SD + ++
Sbjct: 362 TRGKYISVGNPIKLSDSPSD---VQRSPLLGEHTDEILRSVLGFSDHQVADI 410
>sp|A4YXN2|FCTA_BRASO Formyl-coenzyme A transferase OS=Bradyrhizobium sp. (strain ORS278)
GN=frc PE=3 SV=1
Length = 425
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 172/412 (41%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL+G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALEGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGVGDITRGQLQDIPNVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L + DV++E F GV++++ + + NP++I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQAINPKMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R+ P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R+ +GRGQ + M +G L R Q + + G F D
Sbjct: 182 ALYQRTHTGRGQRVTAAMQDGVLNLCRVKLRDQQRLDHGPLKEYSQFGEGVPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGM-TEEELPQHEVETGR- 265
+ GR + E+ + ++ +G T + P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWETDPNAYIYFITQAPVWEKICDVIGEPTWKTDPNYAKPAARL 301
Query: 266 AKLTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
+L E F KT+ E +I + D P+LS+ + G+ + P
Sbjct: 302 PRLNEIFGRIEQWTMTKTKFEAMDILNEFDIPCGPILSMKEIAEDESLRKTGTLVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P +P G HT E+LR G+SD + E+
Sbjct: 362 TRGKYLSVGNPIKLSDSPAD---VTRSPLLGEHTDEILRQVLGFSDHQVAEI 410
>sp|Q9KJE9|BBSF_THAAR Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF
OS=Thauera aromatica GN=bbsF PE=1 SV=1
Length = 409
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 173/417 (41%), Gaps = 63/417 (15%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK-------HGAQPFVQDTVGYG---- 50
AL+GI V +F+ + P +L + GA VI+I+ +PF +D +G G
Sbjct: 8 ALEGIVVCDFSWVGAGPIATSVLAQCGADVIKIESVKRPDTLRRGEPF-KDGIGTGLDRS 66
Query: 51 ---------KKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNP 101
K+ + +++ + V L +SD+++ FR G MEK +LG + + K NP
Sbjct: 67 GYFAARNANKRDIALDMSHPRAREVAVRLIEKSDIVINNFRVGQMEKWKLGWEDVQKINP 126
Query: 102 RLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMC 161
R IY +S G DGP+S G+ +N L G+ + G+ + P D
Sbjct: 127 RAIYVTMSMQGIDGPHSRYMGYGVNLNALCGLTARAGFPGQAPFGTGTNYTDHVMVPTHT 186
Query: 162 ALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGG---- 217
GI+ AL ER +GRGQ + + +E + + T + GE L G
Sbjct: 187 LFGIMAALLEREATGRGQTVSLSQLESA------ICMTPSAPMAFAANGEALGPQGYGDP 240
Query: 218 -AHFYDTYETKDGR-FMAVGALESQFYAQLLAGLG----MTEEELPQHEVETGR-AKLTE 270
A + Y T R ++A+ + +A L +G +E E+ A+L E
Sbjct: 241 EAAPHGVYTTLGYRKWIAIAVFDDAQWATLRRVMGNPPWAEDERFATIEMRRRHAAELDE 300
Query: 271 KFKEKTQAEW----CEIFDNTDACVTPVLSLSQATSHPHNVHRGSF-----------IPN 315
+ + T ++ E V +A H RG + + N
Sbjct: 301 RIEGWTATQYGDWLMEALLKAGVAAGEVRDAREAIEDEHLRRRGFWAYLDHPEVGVTLYN 360
Query: 316 RAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVL-RHFGYSDANIEELIREDVI 371
RA +V SRTP ++ P+ G HTREVL GYS IE+L + V+
Sbjct: 361 RAPIV-------FSRTP--VEMKSAAPSIGQHTREVLGGMLGYSHGEIEDLAAQQVL 408
>sp|A5EGD7|FCTA_BRASB Formyl-coenzyme A transferase OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=frc PE=3 SV=1
Length = 425
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 176/412 (42%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL+G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALEGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGVGDITRGQLQDIPNVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L + DV++E F GV++++ + + NP++I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQAINPKMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R+ P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R+ +G+GQ + M +G L R Q + + G F D
Sbjct: 182 ALYQRTHTGKGQRVTAAMQDGVLNLCRVKLRDQQRLERGPLKEYSQFGEGVPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGM-TEEELPQHEVETGR- 265
+ GR + E+ + ++ +G T + P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWETDPNAYIYFITQAPVWEKICDVIGEPTWKTDPNYAKPAARL 301
Query: 266 AKLTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
+L E F KT+ E +I + D P+LS+ + G+ + P
Sbjct: 302 PRLNEIFGRIEQWTMTKTKFEAMDILNEFDIPCGPILSMKEIAEDESLRKTGTLVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P +++T +P G HT E+LR G+SD + E+
Sbjct: 362 TRGKYLSVGNPIKLSDSP--AEVT-RSPLLGEHTDEILRQVLGFSDHQVAEI 410
>sp|Q217M3|FCTA_RHOPB Formyl-coenzyme A transferase OS=Rhodopseudomonas palustris (strain
BisB18) GN=frc PE=3 SV=1
Length = 426
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/412 (23%), Positives = 170/412 (41%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALNGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGVGDITRGQLQDIPNVDSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ + + NP++I A
Sbjct: 64 NHNKRSITLDTKNPKGKEVLTALIKSCDVLVENFGPGVLDRMGFSWEKIQSLNPKMIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GPY ++ G S G+R+ P D G GL ALGIV
Sbjct: 124 IKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
AL++R+ +GRGQ + M +G L R Q + + G F D
Sbjct: 182 ALYQRTVTGRGQKVTAAMQDGVLNLSRVKLRDQQRLAHGPLKEYSQFGEGIPFGDAVPRA 241
Query: 227 -------KDGRFMAVGALESQ------------FYAQLLAGLGMTEEEL-PQHEVETGR- 265
+ GR + E+ + ++ +G + + P + R
Sbjct: 242 GNDSGGGQPGRILKCKGWETDPNAYIYFITQAPVWEKICDVIGEPDWKTHPDYAKPAARL 301
Query: 266 -------AKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
A++ + KT+ E +I + D P+LS+ + G+ + P
Sbjct: 302 KHLNDIFARIEQWTMTKTKFEAMDILNKDDIPCGPILSMKELAEDQSLRATGTVVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ ++S +P +P G HT E+LR G+SD + E+
Sbjct: 362 TRGKYLSVGNPIKMSDSPTE---VMRSPLLGEHTDEILRQVLGFSDQQVAEV 410
>sp|B6JE29|FCTA_OLICO Formyl-coenzyme A transferase OS=Oligotropha carboxidovorans
(strain ATCC 49405 / DSM 1227 / OM5) GN=frc PE=3 SV=1
Length = 424
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 53/412 (12%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF----VQDT----------V 47
AL G+ +L+F + P C +L FGA VI++++ G +QD +
Sbjct: 4 ALNGVRILDFTHVQSGPTCTQLLAWFGADVIKVERPGTGDITRGQLQDVPNADSLYFTML 63
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
+ K+S+ ++ K KG V+ L DV++E F GV++++ + + K NP+LI A
Sbjct: 64 NHNKRSITLDAKNPKGKEVLTALIKSCDVMVENFAPGVLDRMGFSWENIQKINPKLIVAS 123
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVM 167
+ G+G GP+ ++ G S G+R+ P D G GL ALGIV
Sbjct: 124 IKGFGP-GPFEDCKVYENVAQCTGGSASTTGFRDGLPLVTGAQIGD-SGTGLHLALGIVT 181
Query: 168 ALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYET- 226
ALF R+ SG+GQ + M + L R Q + + G F D
Sbjct: 182 ALFHRTHSGKGQRVTVAMQDSVLNLCRVKMRDQQRLAHGPLKEYSQFGEGIPFGDATPRA 241
Query: 227 -------KDGRFMAVGALES--QFYAQLLAGLGMTEEEL-----PQHEVETGRAK----- 267
+ GR + E+ Y + + E+ P + + AK
Sbjct: 242 GNDSGGGQPGRILKCKGWETDPNAYIYFITQAAVWEKICDVIGEPTWKTDPNYAKPGARL 301
Query: 268 --LTEKFKE-------KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
L E F KT+ E I + D P+LS+ + G+ + P
Sbjct: 302 PRLNEIFGRIEQWTMTKTKFEVMNICNPFDIPCGPILSMKEIAEDKSLYATGTLVEVDHP 361
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEEL 365
R ++ +LS +P + +P G HT E+LR +S++ + ++
Sbjct: 362 TRGKYISVGNPIKLSDSPADVR---RSPLLGEHTDEILRDVLKFSESQVSDI 410
>sp|O87838|FCTA_STRCO Formyl-coenzyme A transferase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=frc PE=3 SV=1
Length = 410
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 104/199 (52%), Gaps = 19/199 (9%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK-HGAQPFVQ-------DTVGY---- 49
AL+GI VL+ + P +L GA V++++ HG Q D++ +
Sbjct: 5 ALEGIRVLDMTHVQSGPSATQLLAWLGADVVKLEAPHGDITRGQLRDLPDVDSLYFTMLN 64
Query: 50 -GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K +G ++ L +SDV++E F G ++++ D + + NPR++YA +
Sbjct: 65 CNKRSITLNTKSERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRVKEINPRIVYASI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGIV 166
G+G+ GPY++ +++ + G +S G+ + PP A G G G+ GI+
Sbjct: 125 KGFGE-GPYTAFKAYEVVAQAMGGSMSTTGFED---GPPLATGAQIGDSGTGVHVVAGIL 180
Query: 167 MALFERSKSGRGQVIDCNM 185
AL++R +GRGQ ++ M
Sbjct: 181 AALYQREHTGRGQRVNVAM 199
>sp|Q82M40|FCTA_STRAW Formyl-coenzyme A transferase OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=frc PE=3 SV=1
Length = 409
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 19/199 (9%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRI-------------DKHGAQPFVQDTVG 48
AL+GI VL+ + P +L GA V+++ D +
Sbjct: 4 ALEGIRVLDMTHVQSGPSATQLLAWLGADVVKLEAPTGDITRGQLRDLPDVDSLYFTMLN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K +G ++ L +SDV++E F G ++++ D + NPR++YA +
Sbjct: 64 CNKRSITLNTKTERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRIRDINPRIVYASI 123
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGIV 166
G+G DGPY+ +++ + G +S G+ + PP A G G G+ GI+
Sbjct: 124 KGFG-DGPYTDFKAYEVVAQAMGGSMSTTGFED---GPPLATGAQIGDSGTGIHAVAGIL 179
Query: 167 MALFERSKSGRGQVIDCNM 185
AL++R +GRGQ ++ M
Sbjct: 180 AALYQRENTGRGQRVNVAM 198
>sp|B4EY24|CAIB_PROMH Crotonobetainyl-CoA:carnitine CoA-transferase OS=Proteus mirabilis
(strain HI4320) GN=caiB PE=3 SV=1
Length = 406
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 170/402 (42%), Gaps = 55/402 (13%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 13 LAGVRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPHYPQLSRRNLHALS 71
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ-- 113
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ
Sbjct: 72 LNIFKEEGRDAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYG 131
Query: 114 DGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
D Y+++ ++ SG L G +++ P P AD+ G+ + AL++
Sbjct: 132 DPQYTNLPAYNTIAQAFSGYLIQNGDKDQ-PMPAFPYTADY-FSGMTATTSALAALYKVQ 189
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRG----ENLLDGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y
Sbjct: 190 QTGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEICPRMTKGKDPYYAGCGLYRC 242
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEKFKEKTQ 277
+DG + + +E F LA L + E+P+ H + +L F++K
Sbjct: 243 QDGYIVMEVVGITQIEEIFKDIGLAHL-LGTPEVPKGTQLIHRINCPHGQL---FEDKLD 298
Query: 278 AEW---------CEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNR--AGVVAPAP-- 324
EW + + VL++ + +P V R S + +G P
Sbjct: 299 -EWLANQPITAVLKRLSELNIASAKVLTIPELEGNPQYVARESITQWKTMSGETCKGPNI 357
Query: 325 APRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
P+ PG KI PA G+ T +L++ GYSD I EL+
Sbjct: 358 MPKFKNNPG--KIWRGMPAHGMDTNAILKNIGYSDEQIRELV 397
>sp|P19413|BAIF_EUBSP Bile acid-CoA hydrolase OS=Eubacterium sp. (strain VPI 12708)
GN=baiF PE=1 SV=3
Length = 426
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 163/399 (40%), Gaps = 35/399 (8%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKK-----SLCI 56
AL G+ +L+ P G +L E GATVI + + GY + S+
Sbjct: 12 ALAGLKILDSGSNIAGPLGGGLLAECGATVIHFEGPKKPDNQRGWYGYPQNHRNQLSMVA 71
Query: 57 NLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG- 115
++K +G + +L +D+ +E + G ++L L +V+ + NP++ +SGYGQ G
Sbjct: 72 DIKSEEGRKIFLDLIKWADIWVESSKGGQYDRLGLSDEVIWEVNPKIAIVHVSGYGQTGD 131
Query: 116 -PYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSK 174
Y + A +D SG +SL G P +DF G C ++
Sbjct: 132 PSYVTRASYDAVGQAFSGYMSLNGTTEALKINP--YLSDFVCGLTTC-WAMLACYVSTIL 188
Query: 175 SGRGQVIDCNMVEGSAYL--GSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFM 232
+G+G+ +D E A + G + D PR N D A + Y KDGR +
Sbjct: 189 TGKGESVDVAQYEALARIMDGRMIQYATDGV--KMPRTGN-KDAQAALFSFYTCKDGRTI 245
Query: 233 AVGALESQFYAQLLAGLGMT-----EEELPQ----HEVETGRAKLTEKFKEKTQAEWC-- 281
+G ++ + +G+ + + P+ + T + EK EK +E
Sbjct: 246 FIGMTGAEVCKRGFPIIGLPVPGTGDPDFPEGFTGWMIYTPVGQRMEKAMEKYVSEHTME 305
Query: 282 EIFDNTDACVTP---VLSLSQATSHPHNVHRGSFI----PNRAGVVAPAPAPRLSRTPGT 334
E+ A P V L + PH RG+ P + + R P
Sbjct: 306 EVEAEMQAHQIPCQRVYELEDCLNDPHWKARGTITEWDDPMMGHITGLGLINKFKRNP-- 363
Query: 335 SKITEHNPAPGVHTREVLRHFGYSDANIEELIREDVIEE 373
S+I P G+ R++L+ GY DA I+EL + ++ E
Sbjct: 364 SEIWRGAPLFGMDNRDILKDLGYDDAKIDELYEQGIVNE 402
>sp|Q9KJF0|BBSE_THAAR Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsE
OS=Thauera aromatica GN=bbsE PE=1 SV=1
Length = 410
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 156/390 (40%), Gaps = 47/390 (12%)
Query: 18 PFCGMILNEFGATVIRIDKHGA------------QPFVQDTVGY-----GKKSLCINLKK 60
P+ + GA VI ++ QP VQ ++ Y GK+ ++L+
Sbjct: 19 PYTAKMFAGLGADVIHVESPAGDPLRRVGPWFRNQPGVQASLPYLYYNAGKRGFAVDLEH 78
Query: 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSM 120
G V + L + +D+++E R G ++ L L + L + N RL+ ++ +G+ GP ++
Sbjct: 79 EAGREVFRTLCSGADLLVESCRPGYLDGLGLSYEELSRDNARLVQTSVTPFGRTGPLAAY 138
Query: 121 AGHDINYLGLSGILSLLGWRNRNPT-PPCNLAADFGGGGLMCALGIVMALFERSKSGRGQ 179
G D+ LSG L L G P P N A + A+G +ALF ++G+GQ
Sbjct: 139 PGSDLTCSALSGFLWLAGIDGDKPVRAPDNQA--YRMAEAYAAVGSAIALFSAQRTGKGQ 196
Query: 180 VIDCNMVEGSAYLGSWLTRTQDTFLWDKP----RGENLLDGGAHFYDTYETKDGRFMAVG 235
++D +E A + WD RG G A + + +G
Sbjct: 197 LVDVACIEAEA-----MALENAAQFWDLEGKIRRGRGREAGSATLHPCADGYIALVAIMG 251
Query: 236 ALESQF--YAQLLAGLGMTEEEL------------PQHEVETGRAKLTEKF-KEKTQAEW 280
+ + + + + G+ E L E T ++ E++ + +++AE
Sbjct: 252 RNKDMWTPFVRWMEAEGVEEWPLFDDDKWIDYAYRTSEEGYTTFCRVFERYTRSRSKAEL 311
Query: 281 CEIFDNTDACVTPVLSLSQATSHPHNVHRGSF---IPNRAGVVAPAPAPRLSRTPGTSKI 337
EI + VTPV ++P HR + + G P ++
Sbjct: 312 YEIGQRFNVAVTPVSDGRDLLANPQLAHREFWQTQFNDTLGADITYPGAPYEFGELQWQL 371
Query: 338 TEHNPAPGVHTREVLRHFGYSDANIEELIR 367
+ P G HTRE+L GY I+ L+R
Sbjct: 372 GRNAPRIGEHTREILVECGYPAFEIDNLLR 401
>sp|Q8GB19|CAIB_PROSL Crotonobetainyl-CoA:carnitine CoA-transferase OS=Proteus sp.
(strain LE138) GN=caiB PE=1 SV=1
Length = 406
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 167/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 13 LAGVRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPHYPQLSRRNLHALS 71
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ-- 113
+N+ K G L +D+ +E + + + +VL + NP+L+ A LSG+GQ
Sbjct: 72 LNIFKDGGRDAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYG 131
Query: 114 DGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
D Y+++ ++ SG L G +++ P P AD+ G+ + AL++
Sbjct: 132 DPQYTNLPAYNTIAQAFSGYLIQNGDKDQ-PMPAFPYTADY-FSGMTATTSALAALYKVQ 189
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRG----ENLLDGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y
Sbjct: 190 QTGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEICPRMTKGKEPYYAGCGLYRC 242
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEKFKEKTQ 277
+DG + + +E F LA L + E+P+ H + +L E ++
Sbjct: 243 QDGYIVMEVVGITQIEEIFKDIGLAHL-LGTPEVPKGTQLIHRINCPHGQLFEDELDEWL 301
Query: 278 AEW-----CEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNR--AGVVAPAP--APRL 328
A + + VL++ + +P V R S + +G P P+
Sbjct: 302 ANQPITAVLKRLSELNIASAKVLTIPELEGNPQYVARESITQWKTMSGETCKGPNIMPKF 361
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG KI PA G+ T +L++ GYSD I EL+
Sbjct: 362 KNNPG--KIWRGMPAHGMDTNAILKNIGYSDEQIRELV 397
>sp|A7ZHC9|CAIB_ECO24 Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=caiB PE=3 SV=1
Length = 405
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 167/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKAR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L ++ E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LSTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B6HYY9|CAIB_ECOSE Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain SE11) GN=caiB PE=3 SV=1
Length = 405
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 167/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L ++ E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LSTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B5RGA5|CAIB_SALG2 Crotonobetainyl-CoA:carnitine CoA-transferase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=caiB PE=3
SV=1
Length = 405
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 167/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLA-PAPFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ APF G + E+GA VI I D QP +L
Sbjct: 12 LAGVRVV-FSGIEIAAPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P PP AD+ G+ + AL +
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPPFPYTADY-FSGMTATTAALAALHKVR 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRG----ENLLDGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEICPRMTKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + + F LA + + E P+ H VE L E+
Sbjct: 242 ADGYIVMELVGITQINECFKDIGLAHI-LGTPEAPEGTQLIHRVECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE F + VL++ + +P V R S + P P+
Sbjct: 301 ATHTIAEVQARFAELNIACAKVLTIPELEGNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG KI P+ G+ T +L++ GYS+A+I+EL+
Sbjct: 361 KNNPG--KIWRGMPSHGMDTAAILKNIGYSEADIKELV 396
>sp|B7N7R3|CAIB_ECOLU Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=caiB PE=3 SV=1
Length = 405
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKAR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRG----ENLLDGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMTKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNVMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B5YYD2|CAIB_ECO5E Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=caiB PE=3 SV=1
Length = 405
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKAR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|Q8XA32|CAIB_ECO57 Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O157:H7 GN=caiB PE=3 SV=1
Length = 405
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKAR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|P31572|CAIB_ECOLI Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain K12) GN=caiB PE=1 SV=3
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B1IRD8|CAIB_ECOLC Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B1XBG3|CAIB_ECODH Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain K12 / DH10B) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|C4ZPW4|CAIB_ECOBW Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|Q32K59|CAIB_SHIDS Crotonobetainyl-CoA:carnitine CoA-transferase OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKAR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKRPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|P59394|CAIB_SHIFL Crotonobetainyl-CoA:carnitine CoA-transferase OS=Shigella flexneri
GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|A7ZVY8|CAIB_ECOHS Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O9:H4 (strain HS) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B7M0D5|CAIB_ECO8A Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
O8 (strain IAI1) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|B7L4G1|CAIB_ECO55 Crotonobetainyl-CoA:carnitine CoA-transferase OS=Escherichia coli
(strain 55989 / EAEC) GN=caiB PE=3 SV=1
Length = 405
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 166/398 (41%), Gaps = 47/398 (11%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRI------DKHGAQPFVQDTVGYGKKSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I D QP +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 130
Query: 116 P--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ G + R
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADYFSGLTATTAALAALHKVR- 188
Query: 174 KSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLL----DGGAHFY---DTYET 226
++G+G+ ID M E +G + F+ D G + G +Y Y+
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQY-------FMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241
Query: 227 KDG----RFMAVGALESQFYAQLLAGLGMTEEELPQ-----HEVETGRAKLTEK-----F 272
DG + + +E F LA L + E+P+ H +E L E+
Sbjct: 242 ADGYIVMELVGITQIEECFKDIGLAHL-LGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300
Query: 273 KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA----GVVAPAPAPRL 328
T AE E F + VL++ + S+P V R S + P P+
Sbjct: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360
Query: 329 SRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 361 KNNPG--QIWRGMPSHGMDTAAILKNIGYSENDIQELV 396
>sp|Q3YZF6|FCTA_SHISS Formyl-coenzyme A transferase OS=Shigella sonnei (strain Ss046)
GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|P69903|FCTA_SHIFL Formyl-coenzyme A transferase OS=Shigella flexneri GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|Q0T2C3|FCTA_SHIF8 Formyl-coenzyme A transferase OS=Shigella flexneri serotype 5b
(strain 8401) GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|Q31Y97|FCTA_SHIBS Formyl-coenzyme A transferase OS=Shigella boydii serotype 4 (strain
Sb227) GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|Q1R8Z2|FCTA_ECOUT Formyl-coenzyme A transferase OS=Escherichia coli (strain UTI89 /
UPEC) GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|B1LMH0|FCTA_ECOSM Formyl-coenzyme A transferase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|B6I6S5|FCTA_ECOSE Formyl-coenzyme A transferase OS=Escherichia coli (strain SE11)
GN=frc PE=3 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
>sp|P69902|FCTA_ECOLI Formyl-coenzyme A transferase OS=Escherichia coli (strain K12)
GN=frc PE=1 SV=1
Length = 416
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV--------------G 48
L+GI VL+F G+ P C +L FGA VI+I++ G + +
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGG--GLMCALGIV 166
G+ + PY ++ ++ G S G+ + PP AA G G+ +G++
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWD---GPPLVSAAALGDSNTGMHLLIGLL 181
Query: 167 MALFERSKSGRGQVIDCNM 185
AL R K+GRGQ + +M
Sbjct: 182 AALLHREKTGRGQRVTMSM 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,456,369
Number of Sequences: 539616
Number of extensions: 6850612
Number of successful extensions: 15932
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15628
Number of HSP's gapped (non-prelim): 139
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)