Query psy1367
Match_columns 381
No_of_seqs 143 out of 1253
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:24:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1804 CaiB Predicted acyl-Co 100.0 2E-100 4E-105 739.4 37.0 367 1-371 6-396 (396)
2 PRK03525 crotonobetainyl-CoA:c 100.0 2.1E-97 4E-102 732.7 39.9 367 1-373 10-403 (405)
3 PRK05398 formyl-coenzyme A tra 100.0 2.3E-96 5E-101 728.2 38.6 365 1-371 3-416 (416)
4 TIGR03253 oxalate_frc formyl-C 100.0 6E-96 1E-100 725.5 38.7 364 1-371 2-415 (415)
5 PRK11430 putative CoA-transfer 100.0 1.1E-94 2.4E-99 707.4 37.1 350 1-355 8-379 (381)
6 KOG3957|consensus 100.0 3.8E-87 8.3E-92 608.9 30.6 371 1-374 3-384 (387)
7 PF02515 CoA_transf_3: CoA-tra 100.0 4.9E-54 1.1E-58 383.8 20.2 190 54-245 1-191 (191)
8 PF00670 AdoHcyase_NAD: S-aden 94.9 0.073 1.6E-06 45.9 6.3 95 2-113 20-114 (162)
9 PF02826 2-Hacid_dh_C: D-isome 92.8 0.22 4.8E-06 43.7 5.5 95 2-109 33-127 (178)
10 PF01262 AlaDh_PNT_C: Alanine 92.6 0.12 2.5E-06 45.0 3.4 104 4-110 19-140 (168)
11 TIGR00518 alaDH alanine dehydr 91.4 1.2 2.5E-05 44.0 9.2 103 3-110 165-268 (370)
12 PRK06932 glycerate dehydrogena 89.2 2.7 5.9E-05 40.4 9.5 89 3-109 145-233 (314)
13 PRK04148 hypothetical protein; 88.5 2 4.2E-05 36.0 6.9 97 4-110 16-112 (134)
14 PRK06487 glycerate dehydrogena 88.4 2.7 5.9E-05 40.5 9.0 88 3-109 146-233 (317)
15 PRK08306 dipicolinate synthase 88.3 2.3 5.1E-05 40.5 8.3 93 3-110 150-242 (296)
16 PLN02928 oxidoreductase family 87.6 3.8 8.2E-05 40.1 9.4 104 3-109 157-262 (347)
17 PRK15469 ghrA bifunctional gly 87.4 4 8.6E-05 39.3 9.4 93 3-109 134-226 (312)
18 TIGR00561 pntA NAD(P) transhyd 86.7 2.9 6.3E-05 43.0 8.3 105 4-110 163-285 (511)
19 cd05311 NAD_bind_2_malic_enz N 86.6 1.3 2.8E-05 40.6 5.2 93 2-109 22-128 (226)
20 PF04127 DFP: DNA / pantothena 85.3 3.6 7.7E-05 36.4 7.2 72 2-80 16-89 (185)
21 COG2227 UbiG 2-polyprenyl-3-me 85.0 1.3 2.8E-05 40.6 4.3 71 3-80 58-131 (243)
22 PRK08410 2-hydroxyacid dehydro 85.0 4.8 0.0001 38.7 8.5 90 3-109 143-232 (311)
23 TIGR02853 spore_dpaA dipicolin 84.0 5.6 0.00012 37.7 8.5 93 3-110 149-241 (287)
24 COG2521 Predicted archaeal met 83.9 2.8 6.2E-05 38.4 5.9 78 2-81 132-213 (287)
25 PTZ00075 Adenosylhomocysteinas 83.0 7 0.00015 39.7 9.0 93 2-111 251-343 (476)
26 PRK06732 phosphopantothenate-- 82.8 4.7 0.0001 36.9 7.2 77 2-82 13-90 (229)
27 PRK13243 glyoxylate reductase; 82.1 9.1 0.0002 37.2 9.3 93 3-109 148-240 (333)
28 PLN02494 adenosylhomocysteinas 82.1 5.6 0.00012 40.4 7.9 93 3-112 252-344 (477)
29 TIGR00521 coaBC_dfp phosphopan 81.5 5.1 0.00011 39.8 7.3 72 2-80 198-272 (390)
30 cd01078 NAD_bind_H4MPT_DH NADP 81.4 3.9 8.5E-05 36.1 6.0 104 2-112 25-132 (194)
31 PRK05476 S-adenosyl-L-homocyst 81.3 8 0.00017 38.9 8.7 94 3-113 210-303 (425)
32 PLN03139 formate dehydrogenase 81.2 9 0.00019 38.0 8.9 95 3-109 197-291 (386)
33 PF01488 Shikimate_DH: Shikima 81.0 2.2 4.7E-05 35.6 3.9 98 2-109 9-109 (135)
34 PRK12480 D-lactate dehydrogena 80.8 5.4 0.00012 38.7 7.1 110 2-134 143-253 (330)
35 PRK15409 bifunctional glyoxyla 80.6 11 0.00023 36.5 9.1 93 3-109 143-236 (323)
36 PRK06436 glycerate dehydrogena 80.6 10 0.00023 36.2 9.0 91 2-109 119-209 (303)
37 PRK07574 formate dehydrogenase 80.4 11 0.00023 37.5 9.1 95 3-109 190-284 (385)
38 cd01080 NAD_bind_m-THF_DH_Cycl 79.4 7.1 0.00015 34.0 6.7 75 2-109 41-116 (168)
39 PLN02306 hydroxypyruvate reduc 78.6 11 0.00024 37.4 8.7 118 3-132 163-289 (386)
40 PRK14191 bifunctional 5,10-met 78.5 62 0.0013 30.7 13.9 74 2-109 154-229 (285)
41 PRK06079 enoyl-(acyl carrier p 78.0 8.4 0.00018 35.3 7.3 80 2-81 4-91 (252)
42 PRK06550 fabG 3-ketoacyl-(acyl 78.0 9.6 0.00021 34.2 7.6 74 1-81 1-75 (235)
43 TIGR02085 meth_trns_rumB 23S r 77.6 3.3 7.1E-05 40.9 4.6 97 3-109 232-335 (374)
44 PRK07060 short chain dehydroge 77.1 8.6 0.00019 34.7 7.0 79 2-81 6-85 (245)
45 PRK00779 ornithine carbamoyltr 77.1 15 0.00032 35.3 8.8 98 2-109 149-265 (304)
46 PRK06841 short chain dehydroge 77.1 10 0.00022 34.5 7.5 80 2-81 12-97 (255)
47 PRK06125 short chain dehydroge 76.8 9.3 0.0002 35.0 7.2 81 1-81 3-89 (259)
48 PRK09424 pntA NAD(P) transhydr 76.5 17 0.00037 37.5 9.5 105 4-110 164-286 (509)
49 COG0499 SAM1 S-adenosylhomocys 76.4 14 0.00031 36.0 8.3 93 2-111 206-298 (420)
50 PRK07856 short chain dehydroge 76.1 14 0.00031 33.6 8.2 77 1-81 2-83 (252)
51 TIGR00936 ahcY adenosylhomocys 76.0 9.7 0.00021 38.0 7.4 95 2-113 192-286 (406)
52 PRK08261 fabG 3-ketoacyl-(acyl 75.4 10 0.00022 38.2 7.6 80 2-81 207-292 (450)
53 PRK03522 rumB 23S rRNA methylu 75.3 3.4 7.3E-05 39.7 3.9 99 3-110 172-276 (315)
54 PLN02342 ornithine carbamoyltr 74.4 18 0.00039 35.4 8.6 101 2-109 191-307 (348)
55 PRK14194 bifunctional 5,10-met 74.1 15 0.00033 35.1 7.9 74 2-109 156-231 (301)
56 PRK08415 enoyl-(acyl carrier p 74.1 13 0.00029 34.7 7.6 80 1-81 1-91 (274)
57 PRK09620 hypothetical protein; 74.1 8.7 0.00019 35.2 6.1 75 2-80 16-94 (229)
58 PRK12481 2-deoxy-D-gluconate 3 73.8 12 0.00027 34.1 7.2 80 2-81 5-91 (251)
59 PRK12548 shikimate 5-dehydroge 73.8 7.9 0.00017 36.7 6.0 80 3-85 124-211 (289)
60 PRK15438 erythronate-4-phospha 73.2 13 0.00029 36.7 7.6 107 2-132 113-224 (378)
61 PRK08605 D-lactate dehydrogena 72.4 20 0.00043 34.8 8.5 92 3-109 144-236 (332)
62 TIGR01832 kduD 2-deoxy-D-gluco 72.2 15 0.00032 33.3 7.3 80 1-81 1-88 (248)
63 PRK07067 sorbitol dehydrogenas 72.1 15 0.00033 33.5 7.4 80 2-81 3-88 (257)
64 PRK08264 short chain dehydroge 71.9 20 0.00043 32.2 8.0 78 3-83 4-83 (238)
65 PRK12829 short chain dehydroge 71.6 14 0.00031 33.6 7.1 81 2-82 8-95 (264)
66 PRK05579 bifunctional phosphop 71.4 14 0.0003 36.9 7.2 60 14-80 214-274 (399)
67 PRK14175 bifunctional 5,10-met 71.2 14 0.00031 35.1 6.9 75 2-110 155-231 (286)
68 PRK06398 aldose dehydrogenase; 71.2 25 0.00053 32.3 8.6 72 2-80 3-79 (258)
69 COG0111 SerA Phosphoglycerate 71.2 26 0.00057 33.9 9.0 93 3-109 140-233 (324)
70 PRK11790 D-3-phosphoglycerate 70.9 24 0.00052 35.3 8.9 91 3-109 149-239 (409)
71 PRK05867 short chain dehydroge 70.9 15 0.00033 33.4 7.1 80 2-81 6-94 (253)
72 PLN02730 enoyl-[acyl-carrier-p 70.8 21 0.00046 34.1 8.2 33 2-34 6-41 (303)
73 TIGR02114 coaB_strep phosphopa 70.6 11 0.00023 34.5 5.9 73 2-82 12-89 (227)
74 cd00401 AdoHcyase S-adenosyl-L 70.6 30 0.00064 34.7 9.4 92 3-111 200-291 (413)
75 KOG1270|consensus 70.6 3.5 7.5E-05 38.4 2.6 36 1-38 86-121 (282)
76 PRK06463 fabG 3-ketoacyl-(acyl 70.5 22 0.00048 32.4 8.1 78 2-80 4-86 (255)
77 PRK07533 enoyl-(acyl carrier p 70.5 20 0.00043 32.9 7.8 79 2-81 7-96 (258)
78 cd01976 Nitrogenase_MoFe_alpha 69.9 34 0.00073 34.4 9.7 109 3-126 298-411 (421)
79 PRK02255 putrescine carbamoylt 69.8 29 0.00063 33.8 8.9 100 2-110 151-273 (338)
80 PRK08993 2-deoxy-D-gluconate 3 69.7 19 0.00041 32.9 7.4 79 3-81 8-93 (253)
81 PLN02371 phosphoglucosamine mu 68.9 16 0.00034 38.5 7.4 70 2-79 260-332 (583)
82 PRK05717 oxidoreductase; Valid 68.9 17 0.00037 33.1 7.0 80 2-81 7-92 (255)
83 PRK14179 bifunctional 5,10-met 68.8 21 0.00045 33.9 7.5 74 2-109 155-230 (284)
84 PRK08217 fabG 3-ketoacyl-(acyl 68.7 19 0.00041 32.5 7.2 81 1-81 1-90 (253)
85 cd03088 ManB ManB is a bacteri 68.1 15 0.00032 37.3 6.9 66 3-79 163-231 (459)
86 PLN02427 UDP-apiose/xylose syn 68.0 48 0.001 32.5 10.4 77 2-81 11-94 (386)
87 TIGR01327 PGDH D-3-phosphoglyc 67.8 32 0.00069 35.7 9.3 95 2-109 135-229 (525)
88 COG1052 LdhA Lactate dehydroge 67.8 29 0.00063 33.6 8.4 114 3-137 144-258 (324)
89 cd01075 NAD_bind_Leu_Phe_Val_D 67.8 15 0.00033 32.7 6.2 109 2-135 25-135 (200)
90 PRK06172 short chain dehydroge 67.7 21 0.00045 32.4 7.3 80 2-81 4-92 (253)
91 PRK02102 ornithine carbamoyltr 67.7 34 0.00074 33.2 8.9 98 2-108 152-272 (331)
92 TIGR00658 orni_carb_tr ornithi 67.4 39 0.00084 32.4 9.2 98 2-108 145-263 (304)
93 PRK08063 enoyl-(acyl carrier p 67.2 24 0.00052 31.9 7.5 80 2-81 1-90 (250)
94 TIGR03325 BphB_TodD cis-2,3-di 67.2 23 0.0005 32.5 7.5 81 1-81 1-87 (262)
95 PRK07232 bifunctional malic en 67.0 11 0.00024 40.7 5.8 99 2-109 182-284 (752)
96 PRK00257 erythronate-4-phospha 66.6 26 0.00055 34.8 7.9 91 2-109 113-207 (381)
97 PRK07774 short chain dehydroge 66.1 22 0.00049 32.0 7.1 80 2-81 3-91 (250)
98 PRK12367 short chain dehydroge 66.1 26 0.00057 32.1 7.6 75 3-81 12-87 (245)
99 PRK05872 short chain dehydroge 65.7 22 0.00048 33.5 7.2 80 2-81 6-93 (296)
100 TIGR00670 asp_carb_tr aspartat 65.6 34 0.00074 32.7 8.4 100 2-110 147-264 (301)
101 cd05212 NAD_bind_m-THF_DH_Cycl 65.6 25 0.00054 29.6 6.6 73 2-107 25-98 (140)
102 PF06353 DUF1062: Protein of u 65.4 7.3 0.00016 32.9 3.3 34 348-381 105-139 (142)
103 PRK06171 sorbitol-6-phosphate 65.2 41 0.00089 30.7 8.8 75 2-81 6-85 (266)
104 PRK09072 short chain dehydroge 65.1 22 0.00047 32.6 6.9 81 1-81 1-88 (263)
105 TIGR01283 nifE nitrogenase mol 65.0 31 0.00067 35.0 8.5 35 2-36 323-357 (456)
106 PRK06523 short chain dehydroge 65.0 33 0.00071 31.2 8.1 75 2-81 6-85 (260)
107 PRK14188 bifunctional 5,10-met 64.9 35 0.00076 32.6 8.2 75 2-110 155-231 (296)
108 PRK08177 short chain dehydroge 64.4 22 0.00047 31.8 6.6 65 16-81 13-79 (225)
109 PRK08594 enoyl-(acyl carrier p 64.0 26 0.00057 32.2 7.2 80 2-81 4-95 (257)
110 PRK05875 short chain dehydroge 63.8 24 0.00051 32.6 6.9 80 2-81 4-94 (276)
111 PRK08265 short chain dehydroge 63.8 36 0.00077 31.2 8.1 79 3-81 4-88 (261)
112 PRK12562 ornithine carbamoyltr 63.6 54 0.0012 31.9 9.4 99 2-109 153-275 (334)
113 COG0686 Ald Alanine dehydrogen 63.6 18 0.0004 34.7 5.9 94 7-110 170-269 (371)
114 PF00107 ADH_zinc_N: Zinc-bind 63.4 14 0.0003 29.8 4.7 87 17-112 3-92 (130)
115 PRK12742 oxidoreductase; Provi 63.2 27 0.00059 31.2 7.0 80 2-81 3-83 (237)
116 TIGR02622 CDP_4_6_dhtase CDP-g 63.1 34 0.00073 33.0 8.1 77 3-82 2-84 (349)
117 TIGR01861 ANFD nitrogenase iro 63.1 42 0.0009 34.7 9.0 112 3-130 326-443 (513)
118 PRK13581 D-3-phosphoglycerate 63.0 54 0.0012 34.0 9.9 93 3-109 138-230 (526)
119 PRK07889 enoyl-(acyl carrier p 62.8 34 0.00073 31.4 7.7 79 3-81 5-93 (256)
120 PRK12862 malic enzyme; Reviewe 62.6 11 0.00024 40.8 4.8 99 2-109 190-292 (763)
121 cd01968 Nitrogenase_NifE_I Nit 62.4 45 0.00098 33.2 9.0 35 3-38 285-320 (410)
122 PRK06200 2,3-dihydroxy-2,3-dih 62.3 26 0.00057 32.0 6.9 79 3-82 4-89 (263)
123 PRK08642 fabG 3-ketoacyl-(acyl 62.2 35 0.00077 30.7 7.7 81 1-81 1-89 (253)
124 COG4221 Short-chain alcohol de 62.0 16 0.00034 33.8 5.1 65 17-81 19-89 (246)
125 PRK09250 fructose-bisphosphate 61.7 15 0.00033 35.7 5.1 22 18-39 220-241 (348)
126 PRK07424 bifunctional sterol d 61.1 28 0.00061 34.8 7.1 78 2-82 175-254 (406)
127 PF08784 RPA_C: Replication pr 61.0 11 0.00025 29.5 3.6 37 342-378 62-102 (102)
128 cd05805 MPG1_transferase GTP-m 60.9 25 0.00055 35.4 6.9 66 3-79 166-234 (441)
129 PRK07097 gluconate 5-dehydroge 60.7 35 0.00076 31.3 7.4 80 2-81 7-95 (265)
130 COG0281 SfcA Malic enzyme [Ene 60.7 17 0.00036 36.2 5.3 124 2-142 196-328 (432)
131 PRK12828 short chain dehydroge 60.5 48 0.001 29.4 8.1 80 2-81 4-90 (239)
132 PRK07576 short chain dehydroge 60.1 31 0.00067 31.7 6.9 81 1-81 5-94 (264)
133 TIGR01282 nifD nitrogenase mol 59.6 41 0.00088 34.3 8.2 88 3-93 333-425 (466)
134 PRK14619 NAD(P)H-dependent gly 59.6 37 0.00081 32.3 7.6 78 4-109 3-82 (308)
135 TIGR02354 thiF_fam2 thiamine b 59.5 74 0.0016 28.4 9.0 106 3-113 19-148 (200)
136 PRK06949 short chain dehydroge 59.4 35 0.00075 31.0 7.1 81 2-82 6-95 (258)
137 PRK06128 oxidoreductase; Provi 59.3 40 0.00087 31.7 7.7 79 3-81 53-142 (300)
138 PRK06139 short chain dehydroge 58.9 31 0.00068 33.3 7.0 80 2-81 4-92 (330)
139 PRK08849 2-octaprenyl-3-methyl 58.9 25 0.00053 34.5 6.4 61 6-70 4-64 (384)
140 PRK07825 short chain dehydroge 58.5 27 0.0006 32.1 6.3 80 1-81 1-86 (273)
141 PRK06196 oxidoreductase; Provi 58.4 28 0.00061 33.0 6.5 79 2-81 23-107 (315)
142 PRK06997 enoyl-(acyl carrier p 58.4 37 0.00079 31.3 7.1 78 3-81 4-92 (260)
143 PRK06057 short chain dehydroge 58.4 38 0.00083 30.8 7.2 77 3-81 5-87 (255)
144 COG2130 Putative NADP-dependen 58.2 93 0.002 29.9 9.5 102 4-114 150-257 (340)
145 PRK06852 aldolase; Validated 58.1 13 0.00029 35.5 4.0 22 17-38 190-211 (304)
146 PRK06935 2-deoxy-D-gluconate 3 58.0 45 0.00098 30.3 7.6 80 2-81 12-99 (258)
147 PRK14178 bifunctional 5,10-met 57.9 68 0.0015 30.3 8.7 36 66-109 188-224 (279)
148 PRK07890 short chain dehydroge 57.7 39 0.00085 30.6 7.2 80 2-81 2-90 (258)
149 PRK08339 short chain dehydroge 57.7 39 0.00085 31.1 7.2 79 2-80 5-92 (263)
150 PRK04284 ornithine carbamoyltr 57.6 58 0.0013 31.6 8.5 100 2-110 152-275 (332)
151 PRK07063 short chain dehydroge 57.5 37 0.0008 30.9 7.0 79 3-81 5-94 (260)
152 PRK07577 short chain dehydroge 57.5 73 0.0016 28.3 8.8 59 16-81 15-76 (234)
153 PRK06500 short chain dehydroge 57.2 41 0.0009 30.2 7.2 79 3-81 4-88 (249)
154 cd01979 Pchlide_reductase_N Pc 57.1 29 0.00062 34.5 6.5 36 2-37 273-308 (396)
155 PRK13394 3-hydroxybutyrate deh 57.1 40 0.00086 30.6 7.1 79 3-81 5-92 (262)
156 PRK08416 7-alpha-hydroxysteroi 57.1 46 0.001 30.4 7.5 78 3-81 6-95 (260)
157 PRK06603 enoyl-(acyl carrier p 57.0 35 0.00077 31.3 6.8 79 3-81 6-94 (260)
158 PRK14192 bifunctional 5,10-met 56.9 34 0.00074 32.4 6.6 75 2-109 156-231 (283)
159 PRK10909 rsmD 16S rRNA m(2)G96 56.8 29 0.00063 31.0 5.8 34 3-37 52-85 (199)
160 COG1830 FbaB DhnA-type fructos 56.8 14 0.0003 34.5 3.8 24 17-40 168-191 (265)
161 PF02879 PGM_PMM_II: Phosphogl 56.3 23 0.00049 27.7 4.6 32 7-38 24-55 (104)
162 cd01079 NAD_bind_m-THF_DH NAD 56.3 42 0.00091 30.0 6.6 94 2-110 59-157 (197)
163 PRK06505 enoyl-(acyl carrier p 56.1 39 0.00084 31.4 6.9 79 3-81 5-93 (271)
164 PRK12748 3-ketoacyl-(acyl-carr 56.0 72 0.0016 28.9 8.7 81 1-81 1-103 (256)
165 COG0300 DltE Short-chain dehyd 55.7 30 0.00066 32.4 6.0 77 3-80 4-91 (265)
166 cd01076 NAD_bind_1_Glu_DH NAD( 55.4 27 0.00059 31.9 5.5 109 3-127 29-148 (227)
167 PRK14478 nitrogenase molybdenu 55.3 51 0.0011 33.7 8.1 34 3-37 322-356 (475)
168 PLN02896 cinnamyl-alcohol dehy 55.2 36 0.00078 32.9 6.8 76 4-82 9-88 (353)
169 PLN02986 cinnamyl-alcohol dehy 54.9 55 0.0012 31.0 7.9 78 3-83 3-87 (322)
170 PRK09135 pteridine reductase; 54.6 62 0.0013 28.9 7.9 79 3-81 4-93 (249)
171 PRK00856 pyrB aspartate carbam 54.6 84 0.0018 30.1 9.0 94 2-110 153-263 (305)
172 PRK07985 oxidoreductase; Provi 54.4 61 0.0013 30.4 8.0 79 3-81 47-136 (294)
173 PRK08690 enoyl-(acyl carrier p 54.2 45 0.00097 30.6 7.0 79 3-81 4-92 (261)
174 PRK07370 enoyl-(acyl carrier p 54.2 65 0.0014 29.5 8.0 80 2-81 3-95 (258)
175 PRK01713 ornithine carbamoyltr 54.2 72 0.0016 31.0 8.5 100 2-110 153-276 (334)
176 PRK06138 short chain dehydroge 54.0 51 0.0011 29.7 7.2 82 1-82 1-90 (252)
177 TIGR01279 DPOR_bchN light-inde 53.7 38 0.00081 33.9 6.7 37 3-39 272-308 (407)
178 PRK12823 benD 1,6-dihydroxycyc 53.6 51 0.0011 30.0 7.2 79 3-81 6-92 (260)
179 PF00185 OTCace: Aspartate/orn 53.4 68 0.0015 27.4 7.4 98 4-110 1-121 (158)
180 PRK12861 malic enzyme; Reviewe 53.3 19 0.00042 38.9 4.7 76 2-85 186-269 (764)
181 PRK07231 fabG 3-ketoacyl-(acyl 53.1 48 0.001 29.7 6.9 79 3-81 3-89 (251)
182 PRK06114 short chain dehydroge 53.1 66 0.0014 29.2 7.9 80 2-81 5-94 (254)
183 PRK08589 short chain dehydroge 53.0 48 0.001 30.6 7.0 78 3-81 4-90 (272)
184 PRK12858 tagatose 1,6-diphosph 53.0 11 0.00025 36.6 2.8 53 18-75 187-241 (340)
185 cd01065 NAD_bind_Shikimate_DH 52.8 37 0.00081 28.2 5.7 98 3-111 17-118 (155)
186 PRK07041 short chain dehydroge 52.7 23 0.00049 31.6 4.6 65 17-81 10-77 (230)
187 PRK12745 3-ketoacyl-(acyl-carr 52.7 39 0.00085 30.5 6.3 66 16-81 14-88 (256)
188 PLN02253 xanthoxin dehydrogena 52.6 55 0.0012 30.2 7.4 79 3-81 16-102 (280)
189 PF10294 Methyltransf_16: Puta 52.6 27 0.00058 30.3 4.8 102 3-109 44-157 (173)
190 PRK06701 short chain dehydroge 52.5 67 0.0015 30.1 8.0 80 2-81 43-132 (290)
191 PRK06124 gluconate 5-dehydroge 52.5 54 0.0012 29.7 7.2 79 2-81 8-96 (256)
192 PRK08159 enoyl-(acyl carrier p 52.4 55 0.0012 30.4 7.3 78 3-81 8-96 (272)
193 PRK14189 bifunctional 5,10-met 52.3 49 0.0011 31.4 6.8 74 2-109 155-230 (285)
194 cd05213 NAD_bind_Glutamyl_tRNA 52.3 40 0.00087 32.3 6.4 95 3-110 176-274 (311)
195 PRK08085 gluconate 5-dehydroge 52.2 51 0.0011 29.8 7.0 79 2-81 6-94 (254)
196 PRK08227 autoinducer 2 aldolas 52.1 9.8 0.00021 35.7 2.1 21 17-37 160-180 (264)
197 PRK08278 short chain dehydroge 51.9 99 0.0021 28.5 8.9 81 1-81 2-98 (273)
198 PRK14169 bifunctional 5,10-met 51.8 52 0.0011 31.2 6.9 35 67-109 193-228 (282)
199 PLN02527 aspartate carbamoyltr 51.8 45 0.00098 32.0 6.6 99 2-109 148-266 (306)
200 cd01977 Nitrogenase_VFe_alpha 51.4 84 0.0018 31.4 8.8 86 3-91 286-377 (415)
201 PRK15414 phosphomannomutase Cp 51.4 51 0.0011 33.4 7.3 70 3-79 168-243 (456)
202 PRK03515 ornithine carbamoyltr 51.3 79 0.0017 30.8 8.3 100 2-110 153-276 (336)
203 CHL00073 chlN photochlorophyll 51.3 85 0.0018 31.9 8.7 88 3-116 312-404 (457)
204 PF08123 DOT1: Histone methyla 51.2 81 0.0017 28.3 7.8 104 5-115 43-164 (205)
205 PRK12826 3-ketoacyl-(acyl-carr 50.8 57 0.0012 29.2 7.0 79 3-81 4-91 (251)
206 PRK08628 short chain dehydroge 50.5 80 0.0017 28.6 8.0 80 2-81 4-91 (258)
207 TIGR03206 benzo_BadH 2-hydroxy 50.4 59 0.0013 29.2 7.0 79 3-81 1-88 (250)
208 PRK00258 aroE shikimate 5-dehy 50.4 28 0.00061 32.7 5.0 100 2-109 120-221 (278)
209 PRK00045 hemA glutamyl-tRNA re 50.3 59 0.0013 32.6 7.5 95 2-109 179-280 (423)
210 PRK14477 bifunctional nitrogen 50.1 84 0.0018 35.1 9.2 113 3-131 318-435 (917)
211 PRK12939 short chain dehydroge 49.9 61 0.0013 29.0 7.1 79 3-81 5-92 (250)
212 PRK15128 23S rRNA m(5)C1962 me 49.7 31 0.00067 34.4 5.3 143 4-154 220-387 (396)
213 PRK08213 gluconate 5-dehydroge 49.7 52 0.0011 29.9 6.6 79 3-81 10-97 (259)
214 TIGR01284 alt_nitrog_alph nitr 49.5 84 0.0018 31.9 8.5 33 3-36 323-357 (457)
215 PRK07564 phosphoglucomutase; V 49.4 57 0.0012 33.9 7.5 72 4-79 225-300 (543)
216 PRK07478 short chain dehydroge 49.4 68 0.0015 29.0 7.3 79 3-81 4-91 (254)
217 PF13460 NAD_binding_10: NADH( 49.4 56 0.0012 27.9 6.4 65 13-84 7-71 (183)
218 PRK05693 short chain dehydroge 49.0 43 0.00092 30.9 6.0 65 16-82 13-81 (274)
219 PRK06198 short chain dehydroge 48.9 64 0.0014 29.2 7.1 79 3-81 4-92 (260)
220 PRK11891 aspartate carbamoyltr 48.9 1E+02 0.0022 31.1 8.8 101 2-110 238-356 (429)
221 PRK07814 short chain dehydroge 48.8 66 0.0014 29.4 7.2 80 2-81 7-95 (263)
222 PRK08220 2,3-dihydroxybenzoate 48.7 98 0.0021 27.8 8.3 74 3-81 6-84 (252)
223 cd05801 PGM_like3 This bacteri 48.4 42 0.00091 34.7 6.3 75 4-79 209-284 (522)
224 PRK15181 Vi polysaccharide bio 48.3 1.1E+02 0.0024 29.4 9.0 77 3-82 13-99 (348)
225 PRK14173 bifunctional 5,10-met 48.1 63 0.0014 30.7 6.8 35 67-109 192-227 (287)
226 PRK05565 fabG 3-ketoacyl-(acyl 48.1 73 0.0016 28.4 7.3 82 1-82 1-92 (247)
227 PRK06483 dihydromonapterin red 48.0 53 0.0012 29.4 6.3 65 16-81 14-82 (236)
228 PF13651 EcoRI_methylase: Aden 47.8 13 0.00028 35.7 2.2 43 57-106 123-165 (336)
229 PRK08303 short chain dehydroge 47.7 1.1E+02 0.0023 29.1 8.6 80 2-81 5-103 (305)
230 PRK07792 fabG 3-ketoacyl-(acyl 47.5 85 0.0018 29.7 7.9 79 2-81 9-97 (306)
231 PLN02662 cinnamyl-alcohol dehy 47.0 76 0.0017 29.8 7.5 76 5-83 4-86 (322)
232 cd05800 PGM_like2 This PGM-lik 46.9 58 0.0013 33.0 6.9 65 4-78 172-239 (461)
233 PF01073 3Beta_HSD: 3-beta hyd 46.7 53 0.0011 30.9 6.2 67 14-83 7-76 (280)
234 PLN02240 UDP-glucose 4-epimera 46.6 97 0.0021 29.6 8.3 79 1-82 1-90 (352)
235 PRK06182 short chain dehydroge 46.5 90 0.002 28.6 7.8 76 5-82 3-83 (273)
236 PRK07062 short chain dehydroge 46.3 83 0.0018 28.6 7.4 80 2-81 5-95 (265)
237 KOG1205|consensus 46.2 65 0.0014 30.5 6.6 77 4-81 11-99 (282)
238 PRK05786 fabG 3-ketoacyl-(acyl 46.1 56 0.0012 29.1 6.1 81 1-81 1-89 (238)
239 PF02882 THF_DHG_CYH_C: Tetrah 46.1 86 0.0019 27.0 6.9 75 2-110 33-109 (160)
240 PRK12937 short chain dehydroge 46.1 2.1E+02 0.0046 25.3 10.8 82 1-82 1-92 (245)
241 PLN00198 anthocyanidin reducta 46.1 72 0.0016 30.5 7.2 79 2-83 6-90 (338)
242 PRK14170 bifunctional 5,10-met 45.7 72 0.0016 30.3 6.8 35 67-109 194-229 (284)
243 PRK09186 flagellin modificatio 45.7 91 0.002 28.1 7.5 79 3-81 2-91 (256)
244 PRK05876 short chain dehydroge 45.5 66 0.0014 29.8 6.7 78 3-81 4-91 (275)
245 PLN02396 hexaprenyldihydroxybe 45.5 28 0.0006 33.7 4.1 34 2-37 129-162 (322)
246 PRK06194 hypothetical protein; 45.4 74 0.0016 29.4 7.0 80 3-82 4-92 (287)
247 PRK06484 short chain dehydroge 45.4 41 0.00089 34.4 5.7 65 17-81 18-87 (520)
248 PRK12859 3-ketoacyl-(acyl-carr 45.3 52 0.0011 30.0 5.9 80 2-81 3-104 (256)
249 PRK07523 gluconate 5-dehydroge 45.1 76 0.0016 28.7 6.9 79 2-80 7-94 (255)
250 PRK14183 bifunctional 5,10-met 44.9 80 0.0017 29.9 7.0 74 2-109 154-229 (281)
251 PRK08226 short chain dehydroge 44.9 75 0.0016 28.9 6.9 78 3-80 4-89 (263)
252 PRK14187 bifunctional 5,10-met 44.9 73 0.0016 30.4 6.7 34 67-108 197-231 (294)
253 PRK07608 ubiquinone biosynthes 44.9 52 0.0011 32.0 6.1 60 6-70 6-65 (388)
254 PRK07109 short chain dehydroge 44.8 75 0.0016 30.6 7.1 80 2-81 5-93 (334)
255 PF01494 FAD_binding_3: FAD bi 44.7 25 0.00055 33.2 3.8 33 6-38 2-34 (356)
256 PLN02657 3,8-divinyl protochlo 44.7 1E+02 0.0022 30.5 8.2 77 3-82 58-145 (390)
257 PRK08324 short chain dehydroge 44.5 60 0.0013 34.8 6.9 80 2-81 419-506 (681)
258 PRK08277 D-mannonate oxidoredu 44.5 74 0.0016 29.3 6.8 79 3-81 8-95 (278)
259 cd05211 NAD_bind_Glu_Leu_Phe_V 44.5 36 0.00079 30.8 4.5 105 2-119 20-133 (217)
260 PRK05854 short chain dehydroge 44.4 75 0.0016 30.2 7.0 78 3-81 12-101 (313)
261 PRK11199 tyrA bifunctional cho 44.2 94 0.002 30.6 7.8 76 6-109 99-175 (374)
262 PRK07806 short chain dehydroge 44.1 1.2E+02 0.0025 27.2 8.0 80 3-82 4-93 (248)
263 PRK11188 rrmJ 23S rRNA methylt 44.0 1.3E+02 0.0028 26.9 8.1 72 4-82 51-126 (209)
264 COG0644 FixC Dehydrogenases (f 44.0 26 0.00057 34.6 3.9 32 7-38 5-36 (396)
265 PRK12827 short chain dehydroge 43.9 1.3E+02 0.0027 26.8 8.2 79 3-81 4-95 (249)
266 PTZ00363 rab-GDP dissociation 43.8 32 0.0007 34.8 4.5 33 6-38 5-37 (443)
267 PRK06720 hypothetical protein; 43.8 1.2E+02 0.0025 26.2 7.5 78 3-80 14-100 (169)
268 PRK05031 tRNA (uracil-5-)-meth 43.7 56 0.0012 32.1 6.1 96 6-110 208-322 (362)
269 COG0451 WcaG Nucleoside-diphos 43.7 1.8E+02 0.0038 27.0 9.4 63 14-82 10-73 (314)
270 PRK09242 tropinone reductase; 43.6 2.1E+02 0.0045 25.8 9.6 80 3-82 7-97 (257)
271 PRK08936 glucose-1-dehydrogena 43.6 1.1E+02 0.0024 27.8 7.8 80 2-81 4-93 (261)
272 KOG1252|consensus 43.5 43 0.00093 32.5 4.9 86 22-113 144-250 (362)
273 PRK05557 fabG 3-ketoacyl-(acyl 43.4 1.2E+02 0.0027 26.8 8.0 81 1-81 1-91 (248)
274 PF13561 adh_short_C2: Enoyl-( 43.4 18 0.00039 32.7 2.5 65 17-81 9-81 (241)
275 cd01967 Nitrogenase_MoFe_alpha 43.0 1.5E+02 0.0032 29.3 9.1 34 3-37 284-318 (406)
276 PF04723 GRDA: Glycine reducta 42.8 39 0.00085 28.2 3.9 87 2-101 2-93 (150)
277 PRK12743 oxidoreductase; Provi 42.8 65 0.0014 29.3 6.1 66 16-81 14-88 (256)
278 PRK07984 enoyl-(acyl carrier p 42.7 91 0.002 28.8 7.1 79 3-81 4-92 (262)
279 PLN02989 cinnamyl-alcohol dehy 42.7 1.1E+02 0.0023 29.0 7.7 77 4-83 4-87 (325)
280 PRK12744 short chain dehydroge 42.6 1.4E+02 0.003 27.0 8.3 81 2-82 5-98 (257)
281 TIGR02028 ChlP geranylgeranyl 42.6 29 0.00063 34.4 3.9 32 6-37 1-32 (398)
282 PRK08643 acetoin reductase; Va 42.3 56 0.0012 29.6 5.6 66 16-81 14-87 (256)
283 PRK12429 3-hydroxybutyrate deh 42.3 1E+02 0.0022 27.7 7.3 79 3-81 2-89 (258)
284 PRK07831 short chain dehydroge 42.0 82 0.0018 28.7 6.7 79 3-81 15-105 (262)
285 PRK08163 salicylate hydroxylas 41.7 62 0.0013 31.6 6.1 34 5-38 4-37 (396)
286 PF00899 ThiF: ThiF family; I 41.6 1.4E+02 0.003 24.3 7.4 102 6-111 3-128 (135)
287 PRK13403 ketol-acid reductoiso 41.5 1.3E+02 0.0029 29.2 7.9 96 2-111 13-108 (335)
288 PF00890 FAD_binding_2: FAD bi 41.1 29 0.00063 34.3 3.7 31 8-38 2-32 (417)
289 COG0293 FtsJ 23S rRNA methylas 41.0 1.6E+02 0.0034 26.5 7.9 71 4-83 45-121 (205)
290 PRK06113 7-alpha-hydroxysteroi 40.9 2.7E+02 0.0059 25.0 11.1 81 2-82 8-97 (255)
291 PRK14177 bifunctional 5,10-met 40.8 96 0.0021 29.4 6.8 50 48-109 181-231 (284)
292 TIGR02733 desat_CrtD C-3',4' d 40.8 1.1E+02 0.0024 31.1 7.9 32 7-38 3-34 (492)
293 PRK07454 short chain dehydroge 40.7 86 0.0019 28.0 6.5 75 7-81 8-91 (241)
294 PF00389 2-Hacid_dh: D-isomer 40.7 47 0.001 27.1 4.3 63 61-137 26-88 (133)
295 PRK05884 short chain dehydroge 40.5 55 0.0012 29.3 5.1 64 16-81 12-77 (223)
296 PRK08013 oxidoreductase; Provi 40.4 60 0.0013 32.0 5.8 33 6-38 4-36 (400)
297 PRK07666 fabG 3-ketoacyl-(acyl 40.2 98 0.0021 27.6 6.8 80 3-82 5-93 (239)
298 PRK14322 glmM phosphoglucosami 40.1 80 0.0017 31.7 6.7 34 3-36 163-197 (429)
299 COG0569 TrkA K+ transport syst 40.0 60 0.0013 29.5 5.2 99 7-109 2-101 (225)
300 PF05221 AdoHcyase: S-adenosyl 39.8 34 0.00073 32.1 3.6 36 1-36 39-75 (268)
301 PRK02705 murD UDP-N-acetylmura 39.8 54 0.0012 33.0 5.5 71 7-80 2-75 (459)
302 PLN02477 glutamate dehydrogena 39.7 59 0.0013 32.6 5.5 111 2-129 203-325 (410)
303 PLN02516 methylenetetrahydrofo 39.7 1E+02 0.0022 29.5 6.9 36 67-109 204-239 (299)
304 PRK14186 bifunctional 5,10-met 39.6 1E+02 0.0022 29.4 6.9 35 67-109 195-230 (297)
305 KOG0725|consensus 39.4 1.1E+02 0.0023 28.7 7.0 81 2-83 5-99 (270)
306 TIGR01988 Ubi-OHases Ubiquinon 39.3 62 0.0013 31.3 5.7 32 8-39 2-33 (385)
307 PRK14031 glutamate dehydrogena 39.0 45 0.00097 33.8 4.6 37 2-38 225-261 (444)
308 PRK14166 bifunctional 5,10-met 38.9 1.1E+02 0.0023 29.1 6.8 50 48-109 179-229 (282)
309 PLN02214 cinnamoyl-CoA reducta 38.7 1.1E+02 0.0023 29.6 7.1 78 3-83 8-91 (342)
310 PRK12475 thiamine/molybdopteri 38.6 2.7E+02 0.0059 27.0 9.9 105 3-113 22-155 (338)
311 PF13450 NAD_binding_8: NAD(P) 38.5 74 0.0016 22.8 4.6 30 11-40 2-31 (68)
312 COG0287 TyrA Prephenate dehydr 38.5 80 0.0017 29.9 6.0 96 6-111 4-100 (279)
313 PRK07791 short chain dehydroge 38.5 1.3E+02 0.0028 28.0 7.5 79 2-81 3-100 (286)
314 cd08239 THR_DH_like L-threonin 38.5 2.7E+02 0.0058 26.4 9.9 76 4-83 163-241 (339)
315 PRK07326 short chain dehydroge 38.2 1.2E+02 0.0026 26.9 7.0 79 3-81 4-90 (237)
316 PRK13814 pyrB aspartate carbam 38.2 2E+02 0.0044 27.6 8.7 93 2-107 154-262 (310)
317 cd08296 CAD_like Cinnamyl alco 38.1 2.7E+02 0.0059 26.3 9.9 97 5-111 164-261 (333)
318 TIGR01132 pgm phosphoglucomuta 38.1 71 0.0015 33.2 6.1 34 4-37 226-260 (543)
319 PRK07453 protochlorophyllide o 38.0 1E+02 0.0023 29.1 6.9 79 3-81 4-91 (322)
320 PRK00094 gpsA NAD(P)H-dependen 37.8 2E+02 0.0044 27.1 8.9 99 7-113 3-110 (325)
321 TIGR02356 adenyl_thiF thiazole 37.8 2.9E+02 0.0063 24.5 9.5 106 3-112 19-148 (202)
322 cd05312 NAD_bind_1_malic_enz N 37.8 37 0.00079 32.1 3.5 102 2-109 22-140 (279)
323 PRK08862 short chain dehydroge 37.8 1.5E+02 0.0032 26.6 7.5 79 2-81 2-91 (227)
324 TIGR03589 PseB UDP-N-acetylglu 37.7 1.2E+02 0.0026 28.9 7.3 76 3-81 2-82 (324)
325 PRK12320 hypothetical protein; 37.7 1.8E+02 0.0038 31.5 9.0 97 7-113 2-106 (699)
326 PRK06077 fabG 3-ketoacyl-(acyl 37.7 1.6E+02 0.0034 26.4 7.8 80 2-81 3-92 (252)
327 PRK14805 ornithine carbamoyltr 37.6 1.5E+02 0.0033 28.3 7.8 96 2-107 144-259 (302)
328 TIGR03466 HpnA hopanoid-associ 37.5 97 0.0021 29.0 6.6 63 14-81 10-72 (328)
329 TIGR02355 moeB molybdopterin s 37.3 2.6E+02 0.0056 25.6 9.1 105 3-111 22-150 (240)
330 PRK12809 putative oxidoreducta 37.3 49 0.0011 35.1 4.9 35 4-38 309-343 (639)
331 COG4017 Uncharacterized protei 37.3 1E+02 0.0022 27.5 5.9 79 4-107 44-128 (254)
332 PRK13168 rumA 23S rRNA m(5)U19 37.3 53 0.0011 33.2 4.9 100 4-110 297-402 (443)
333 PLN02653 GDP-mannose 4,6-dehyd 37.2 1.7E+02 0.0037 27.8 8.3 77 3-82 4-92 (340)
334 PRK07035 short chain dehydroge 37.2 1.2E+02 0.0026 27.3 6.9 80 2-81 5-93 (252)
335 cd03089 PMM_PGM The phosphoman 37.1 1.1E+02 0.0023 30.9 7.0 67 4-79 162-231 (443)
336 PRK06101 short chain dehydroge 37.0 57 0.0012 29.4 4.7 63 16-81 13-79 (240)
337 PRK09542 manB phosphomannomuta 37.0 1E+02 0.0022 31.1 6.9 68 3-79 162-232 (445)
338 smart00859 Semialdhyde_dh Semi 36.9 1.4E+02 0.0029 23.9 6.5 89 14-110 9-100 (122)
339 PF00148 Oxidored_nitro: Nitro 36.9 1.1E+02 0.0023 30.2 7.0 36 3-38 269-304 (398)
340 PRK05476 S-adenosyl-L-homocyst 36.8 41 0.00088 33.9 3.9 36 1-36 44-80 (425)
341 PRK07677 short chain dehydroge 36.6 1.3E+02 0.0028 27.2 7.0 66 16-81 13-86 (252)
342 TIGR00936 ahcY adenosylhomocys 36.4 40 0.00087 33.7 3.8 35 1-35 28-63 (406)
343 PRK13265 glycine/sarcosine/bet 36.4 49 0.0011 27.7 3.6 33 2-34 3-37 (154)
344 PLN00141 Tic62-NAD(P)-related 36.4 1.5E+02 0.0032 26.9 7.4 75 4-81 16-93 (251)
345 PRK06179 short chain dehydroge 36.4 1.1E+02 0.0025 27.8 6.7 63 17-83 17-83 (270)
346 PRK05993 short chain dehydroge 36.2 1.3E+02 0.0029 27.6 7.2 73 7-81 6-84 (277)
347 PRK06475 salicylate hydroxylas 36.2 69 0.0015 31.5 5.5 33 6-38 3-35 (400)
348 PLN02616 tetrahydrofolate dehy 36.2 1.1E+02 0.0025 30.0 6.7 35 67-109 268-303 (364)
349 PRK08773 2-octaprenyl-3-methyl 36.2 95 0.002 30.4 6.4 35 4-38 5-39 (392)
350 PRK06953 short chain dehydroge 36.0 1.1E+02 0.0024 27.1 6.3 64 16-81 13-78 (222)
351 PRK10742 putative methyltransf 36.0 51 0.0011 30.6 4.1 31 5-37 87-119 (250)
352 COG4332 Uncharacterized protei 35.9 38 0.00082 29.7 3.0 26 348-373 141-167 (203)
353 PRK14317 glmM phosphoglucosami 35.6 54 0.0012 33.3 4.7 34 3-36 186-220 (465)
354 PRK07200 aspartate/ornithine c 35.5 2E+02 0.0044 28.7 8.5 97 3-107 185-328 (395)
355 PRK08192 aspartate carbamoyltr 35.5 2.3E+02 0.0049 27.6 8.7 98 2-108 156-273 (338)
356 PRK06617 2-octaprenyl-6-methox 35.4 94 0.002 30.3 6.2 31 7-37 3-33 (374)
357 TIGR02197 heptose_epim ADP-L-g 35.3 84 0.0018 29.3 5.7 66 14-82 8-75 (314)
358 PRK06181 short chain dehydroge 35.3 89 0.0019 28.4 5.8 66 17-82 14-87 (263)
359 PRK14180 bifunctional 5,10-met 35.3 1.3E+02 0.0028 28.5 6.8 50 48-109 180-230 (282)
360 cd05191 NAD_bind_amino_acid_DH 35.2 1.9E+02 0.0041 21.5 7.5 32 2-33 20-51 (86)
361 TIGR01984 UbiH 2-polyprenyl-6- 34.9 84 0.0018 30.5 5.8 31 8-38 2-33 (382)
362 COG2518 Pcm Protein-L-isoaspar 34.9 51 0.0011 29.8 3.8 33 4-38 72-104 (209)
363 KOG0029|consensus 34.8 45 0.00097 34.4 3.9 34 5-38 15-48 (501)
364 TIGR03316 ygeW probable carbam 34.7 2.6E+02 0.0056 27.5 9.0 69 3-80 168-252 (357)
365 PLN03209 translocon at the inn 34.6 99 0.0022 32.4 6.4 76 4-82 79-168 (576)
366 TIGR01860 VNFD nitrogenase van 34.4 2.1E+02 0.0045 29.1 8.7 87 3-92 325-417 (461)
367 PRK12936 3-ketoacyl-(acyl-carr 34.4 1.6E+02 0.0036 26.0 7.3 79 3-81 4-88 (245)
368 PRK14176 bifunctional 5,10-met 34.4 1.4E+02 0.0031 28.3 6.9 74 2-109 161-236 (287)
369 PRK12428 3-alpha-hydroxysteroi 34.3 48 0.001 30.0 3.7 54 21-81 2-56 (241)
370 PLN02695 GDP-D-mannose-3',5'-e 34.2 1.7E+02 0.0036 28.6 7.8 74 3-81 19-93 (370)
371 PRK08263 short chain dehydroge 34.1 79 0.0017 29.1 5.3 66 16-81 15-85 (275)
372 cd01980 Chlide_reductase_Y Chl 34.0 1.1E+02 0.0024 30.6 6.5 83 3-91 279-369 (416)
373 cd00762 NAD_bind_malic_enz NAD 34.0 37 0.0008 31.6 2.9 119 2-142 22-171 (254)
374 PRK07832 short chain dehydroge 33.9 87 0.0019 28.8 5.5 66 17-82 13-87 (272)
375 PRK12747 short chain dehydroge 33.8 1.9E+02 0.0041 26.0 7.7 79 3-81 2-96 (252)
376 cd05799 PGM2 This CD includes 33.7 1.1E+02 0.0025 31.1 6.7 69 4-78 185-257 (487)
377 PRK08267 short chain dehydroge 33.6 77 0.0017 28.8 5.0 66 17-82 14-86 (260)
378 PRK07578 short chain dehydroge 33.5 1.1E+02 0.0025 26.4 5.9 51 17-81 13-63 (199)
379 TIGR01286 nifK nitrogenase mol 33.5 1.8E+02 0.0039 30.1 8.1 82 3-87 361-451 (515)
380 cd05313 NAD_bind_2_Glu_DH NAD( 33.5 70 0.0015 29.8 4.6 36 2-37 35-70 (254)
381 PRK14030 glutamate dehydrogena 33.5 61 0.0013 32.8 4.5 36 2-37 225-260 (445)
382 PRK10538 malonic semialdehyde 33.4 90 0.002 28.2 5.4 66 16-81 12-82 (248)
383 TIGR02023 BchP-ChlP geranylger 33.2 51 0.0011 32.4 3.9 31 7-37 2-32 (388)
384 cd00757 ThiF_MoeB_HesA_family 33.1 3.7E+02 0.0079 24.2 10.3 105 3-111 19-147 (228)
385 PLN02271 serine hydroxymethylt 32.8 30 0.00065 36.1 2.2 71 42-112 230-310 (586)
386 PRK12769 putative oxidoreducta 32.8 97 0.0021 33.0 6.2 35 4-38 326-360 (654)
387 PLN02489 homocysteine S-methyl 32.8 1.2E+02 0.0026 29.5 6.3 43 53-95 46-93 (335)
388 PRK14172 bifunctional 5,10-met 32.5 1.6E+02 0.0034 27.9 6.8 34 67-108 195-229 (278)
389 PRK08306 dipicolinate synthase 32.5 1.9E+02 0.0042 27.4 7.6 91 6-113 3-103 (296)
390 PRK10157 putative oxidoreducta 32.3 49 0.0011 33.1 3.7 33 6-38 6-38 (428)
391 cd00401 AdoHcyase S-adenosyl-L 32.3 52 0.0011 33.0 3.8 36 1-36 32-68 (413)
392 COG0334 GdhA Glutamate dehydro 32.3 71 0.0015 31.9 4.6 38 2-39 204-241 (411)
393 PLN02556 cysteine synthase/L-3 32.3 1E+02 0.0022 30.3 5.9 94 18-113 147-254 (368)
394 PRK06484 short chain dehydroge 32.3 1.3E+02 0.0028 30.7 6.9 79 3-81 267-351 (520)
395 cd01965 Nitrogenase_MoFe_beta_ 32.2 1.7E+02 0.0038 29.2 7.6 86 3-91 297-390 (428)
396 PRK05479 ketol-acid reductoiso 32.1 1.5E+02 0.0032 28.9 6.7 98 2-113 14-112 (330)
397 TIGR01862 N2-ase-Ialpha nitrog 32.1 3E+02 0.0064 27.8 9.3 35 3-37 315-350 (443)
398 PRK14181 bifunctional 5,10-met 32.1 1.6E+02 0.0034 28.0 6.8 35 67-109 194-229 (287)
399 PF13348 Y_phosphatase3C: Tyro 32.1 47 0.001 23.7 2.6 20 348-367 45-65 (68)
400 PF10727 Rossmann-like: Rossma 32.1 97 0.0021 25.5 4.8 90 6-110 11-105 (127)
401 PRK06914 short chain dehydroge 31.9 1.6E+02 0.0034 27.0 6.9 77 5-81 3-89 (280)
402 PRK08644 thiamine biosynthesis 31.8 3E+02 0.0064 24.7 8.4 107 3-113 26-157 (212)
403 PRK00517 prmA ribosomal protei 31.8 74 0.0016 29.2 4.6 87 3-102 118-206 (250)
404 TIGR02415 23BDH acetoin reduct 31.7 1.1E+02 0.0023 27.5 5.7 66 17-82 13-86 (254)
405 smart00540 LEM in nuclear memb 31.7 35 0.00077 22.6 1.7 25 272-296 3-27 (44)
406 PRK14319 glmM phosphoglucosami 31.6 1.2E+02 0.0026 30.4 6.4 33 4-36 161-194 (430)
407 PRK14618 NAD(P)H-dependent gly 31.6 1.4E+02 0.003 28.5 6.7 95 6-109 5-104 (328)
408 PRK07102 short chain dehydroge 31.5 95 0.0021 27.8 5.2 65 17-81 14-84 (243)
409 PRK08340 glucose-1-dehydrogena 31.4 82 0.0018 28.6 4.8 65 17-81 13-84 (259)
410 PRK07024 short chain dehydroge 31.3 88 0.0019 28.4 5.0 66 16-81 14-86 (257)
411 PF05874 PBAN: Pheromone biosy 31.2 27 0.00059 30.2 1.4 34 43-78 41-74 (195)
412 PF01729 QRPTase_C: Quinolinat 31.2 1.2E+02 0.0026 26.3 5.5 51 54-110 83-134 (169)
413 PRK12746 short chain dehydroge 31.2 2.1E+02 0.0045 25.7 7.5 79 3-81 4-98 (254)
414 PRK12384 sorbitol-6-phosphate 31.1 1E+02 0.0022 27.9 5.4 66 16-81 14-89 (259)
415 PLN00203 glutamyl-tRNA reducta 31.1 1.5E+02 0.0032 30.8 7.0 97 3-109 264-369 (519)
416 TIGR03219 salicylate_mono sali 30.9 1.2E+02 0.0026 30.0 6.2 33 6-38 1-34 (414)
417 PRK08132 FAD-dependent oxidore 30.8 1E+02 0.0023 31.8 6.0 33 6-38 24-56 (547)
418 TIGR00479 rumA 23S rRNA (uraci 30.7 1E+02 0.0022 31.0 5.6 97 4-109 292-397 (431)
419 cd08803 Death_ank3 Death domai 30.6 58 0.0013 24.8 3.0 27 342-368 12-38 (84)
420 CHL00194 ycf39 Ycf39; Provisio 30.4 1.5E+02 0.0032 28.1 6.6 70 7-81 2-72 (317)
421 PRK08125 bifunctional UDP-gluc 30.4 2.7E+02 0.0059 29.6 9.1 73 5-80 315-389 (660)
422 PRK08274 tricarballylate dehyd 30.3 56 0.0012 33.0 3.8 32 6-37 5-36 (466)
423 PRK02842 light-independent pro 30.3 1.9E+02 0.0042 29.0 7.6 36 3-39 288-325 (427)
424 COG0654 UbiH 2-polyprenyl-6-me 30.2 1E+02 0.0022 30.3 5.5 32 6-37 3-34 (387)
425 PRK05653 fabG 3-ketoacyl-(acyl 30.1 2.1E+02 0.0046 25.2 7.3 79 3-81 3-90 (246)
426 PRK06180 short chain dehydroge 30.1 1.1E+02 0.0024 28.2 5.5 67 16-82 16-87 (277)
427 TIGR01470 cysG_Nterm siroheme 29.8 2.6E+02 0.0056 25.0 7.6 72 2-81 6-77 (205)
428 PRK13940 glutamyl-tRNA reducta 29.7 1.1E+02 0.0024 30.6 5.7 72 2-82 178-251 (414)
429 PRK05866 short chain dehydroge 29.7 1.6E+02 0.0034 27.6 6.6 79 3-81 38-125 (293)
430 PRK06197 short chain dehydroge 29.7 1.6E+02 0.0034 27.7 6.5 79 3-81 14-103 (306)
431 PRK07239 bifunctional uroporph 29.6 76 0.0016 31.2 4.5 33 1-34 7-39 (381)
432 PRK09009 C factor cell-cell si 29.6 2.1E+02 0.0045 25.3 7.1 65 13-82 10-76 (235)
433 COG1004 Ugd Predicted UDP-gluc 29.6 1.2E+02 0.0026 30.3 5.6 65 7-80 2-83 (414)
434 PF01476 LysM: LysM domain; I 29.6 42 0.00091 21.4 1.8 19 85-103 12-30 (44)
435 PF10281 Ish1: Putative stress 29.5 34 0.00075 21.6 1.3 31 272-302 1-32 (38)
436 TIGR01285 nifN nitrogenase mol 29.4 1.4E+02 0.0029 30.2 6.3 81 3-91 309-392 (432)
437 cd08568 GDPD_TmGDE_like Glycer 29.4 1.5E+02 0.0032 26.7 6.0 52 50-108 91-146 (226)
438 PLN00093 geranylgeranyl diphos 29.4 63 0.0014 32.7 3.9 32 6-37 40-71 (450)
439 PRK07364 2-octaprenyl-6-methox 29.3 55 0.0012 32.2 3.5 33 6-38 19-51 (415)
440 PF06047 SynMuv_product: Ras-i 29.3 65 0.0014 25.4 3.0 26 340-373 26-51 (104)
441 PF03807 F420_oxidored: NADP o 29.3 87 0.0019 23.6 3.9 80 16-109 10-94 (96)
442 PRK06184 hypothetical protein; 29.2 1.1E+02 0.0024 31.3 5.7 33 6-38 4-36 (502)
443 PLN02612 phytoene desaturase 29.2 65 0.0014 33.7 4.1 37 2-38 90-126 (567)
444 TIGR00438 rrmJ cell division p 29.1 3.8E+02 0.0081 23.1 8.8 34 3-37 31-66 (188)
445 KOG1370|consensus 29.1 2.4E+02 0.0051 27.3 7.2 93 3-112 212-304 (434)
446 COG0771 MurD UDP-N-acetylmuram 29.0 1.6E+02 0.0034 30.0 6.5 72 3-80 5-76 (448)
447 PRK07045 putative monooxygenas 28.9 66 0.0014 31.5 3.9 33 6-38 6-38 (388)
448 PRK12938 acetyacetyl-CoA reduc 28.8 2.7E+02 0.0058 24.8 7.7 78 4-81 2-89 (246)
449 COG1109 {ManB} Phosphomannomut 28.7 60 0.0013 33.0 3.6 34 3-36 176-210 (464)
450 TIGR01316 gltA glutamate synth 28.6 82 0.0018 31.8 4.6 37 2-38 130-166 (449)
451 cd03466 Nitrogenase_NifN_2 Nit 28.5 2.7E+02 0.0058 28.0 8.2 86 3-91 298-391 (429)
452 TIGR01181 dTDP_gluc_dehyt dTDP 28.5 2.1E+02 0.0045 26.5 7.2 66 15-83 10-83 (317)
453 cd08233 butanediol_DH_like (2R 28.5 4.7E+02 0.01 24.8 9.8 99 5-112 173-275 (351)
454 PRK10015 oxidoreductase; Provi 28.5 63 0.0014 32.4 3.7 33 6-38 6-38 (429)
455 PTZ00075 Adenosylhomocysteinas 28.5 67 0.0014 32.8 3.8 35 1-35 41-76 (476)
456 PRK10217 dTDP-glucose 4,6-dehy 28.4 2.3E+02 0.0051 27.0 7.7 73 7-82 3-83 (355)
457 COG3349 Uncharacterized conser 28.4 65 0.0014 33.0 3.7 32 6-37 1-32 (485)
458 PLN02897 tetrahydrofolate dehy 28.2 1.8E+02 0.004 28.3 6.6 35 67-109 251-286 (345)
459 TIGR03451 mycoS_dep_FDH mycoth 28.1 4.8E+02 0.01 25.0 9.8 75 5-82 177-254 (358)
460 PRK12549 shikimate 5-dehydroge 28.1 2E+02 0.0044 27.1 6.9 98 3-109 125-227 (284)
461 PRK07588 hypothetical protein; 28.0 70 0.0015 31.3 3.9 32 6-37 1-32 (391)
462 cd01487 E1_ThiF_like E1_ThiF_l 27.9 3.1E+02 0.0067 23.6 7.6 103 7-113 1-128 (174)
463 PRK12749 quinate/shikimate deh 27.9 1.4E+02 0.003 28.3 5.7 81 3-85 122-208 (288)
464 PRK11908 NAD-dependent epimera 27.7 3.2E+02 0.0069 26.1 8.5 70 7-80 3-75 (347)
465 PRK07688 thiamine/molybdopteri 27.7 3.5E+02 0.0075 26.3 8.6 105 3-113 22-155 (339)
466 PRK07066 3-hydroxybutyryl-CoA 27.5 73 0.0016 30.8 3.8 96 10-109 12-119 (321)
467 TIGR00507 aroE shikimate 5-deh 27.5 1.4E+02 0.003 27.8 5.7 94 4-109 116-214 (270)
468 PRK08005 epimerase; Validated 27.4 2.8E+02 0.0061 25.0 7.4 75 22-102 75-163 (210)
469 TIGR01472 gmd GDP-mannose 4,6- 27.3 2E+02 0.0043 27.5 6.9 66 14-82 10-87 (343)
470 PRK11760 putative 23S rRNA C24 27.3 89 0.0019 30.6 4.3 33 2-36 209-241 (357)
471 PRK07121 hypothetical protein; 27.2 67 0.0015 32.8 3.7 33 6-38 21-53 (492)
472 cd08236 sugar_DH NAD(P)-depend 27.1 4.6E+02 0.01 24.7 9.4 76 4-83 159-237 (343)
473 TIGR02685 pter_reduc_Leis pter 27.1 1.6E+02 0.0034 26.9 5.9 66 16-81 13-92 (267)
474 PF03435 Saccharop_dh: Sacchar 27.1 1E+02 0.0023 30.2 5.0 71 11-84 4-78 (386)
475 PF07991 IlvN: Acetohydroxy ac 27.0 1.2E+02 0.0027 26.2 4.7 73 3-87 2-74 (165)
476 COG1985 RibD Pyrimidine reduct 27.0 37 0.00081 30.8 1.6 52 58-109 28-82 (218)
477 cd08319 Death_RAIDD Death doma 27.0 61 0.0013 24.6 2.5 27 342-368 10-36 (83)
478 PRK06123 short chain dehydroge 26.9 1.7E+02 0.0037 26.1 6.1 66 16-81 14-88 (248)
479 PRK08293 3-hydroxybutyryl-CoA 26.9 1.2E+02 0.0026 28.4 5.2 30 8-37 6-35 (287)
480 PRK14171 bifunctional 5,10-met 26.9 2.4E+02 0.0051 26.9 7.0 35 67-109 196-231 (288)
481 COG0062 Uncharacterized conser 26.8 1.2E+02 0.0026 27.3 4.8 57 17-79 65-125 (203)
482 PRK06482 short chain dehydroge 26.8 1.2E+02 0.0026 27.8 5.2 66 16-81 14-84 (276)
483 cd08573 GDPD_GDE1 Glycerophosp 26.8 1.4E+02 0.003 27.6 5.5 58 44-108 95-159 (258)
484 PF01728 FtsJ: FtsJ-like methy 26.8 31 0.00067 29.8 1.0 33 4-38 23-58 (181)
485 PRK12935 acetoacetyl-CoA reduc 26.4 2.2E+02 0.0048 25.3 6.8 79 3-81 4-92 (247)
486 COG4034 Uncharacterized protei 26.4 2.4E+02 0.0053 26.6 6.7 92 48-141 102-213 (328)
487 KOG0069|consensus 26.4 2.8E+02 0.006 27.1 7.5 117 3-139 160-277 (336)
488 TIGR02143 trmA_only tRNA (urac 26.3 1.2E+02 0.0026 29.6 5.2 94 5-110 198-313 (353)
489 PTZ00079 NADP-specific glutama 26.3 1.1E+02 0.0023 31.2 4.8 37 2-38 234-270 (454)
490 PRK07819 3-hydroxybutyryl-CoA 26.2 1.9E+02 0.004 27.3 6.3 87 12-109 12-121 (286)
491 PRK06753 hypothetical protein; 26.2 82 0.0018 30.5 4.0 33 6-38 1-33 (373)
492 cd08311 Death_p75NR Death doma 26.1 1.1E+02 0.0023 22.9 3.7 27 342-368 12-38 (77)
493 PRK09813 fructoselysine 6-kina 26.1 1.1E+02 0.0024 28.0 4.7 81 28-109 113-193 (260)
494 PRK07074 short chain dehydroge 26.1 1.5E+02 0.0033 26.7 5.6 65 17-81 15-85 (257)
495 PLN03013 cysteine synthase 26.1 1.5E+02 0.0033 29.8 5.9 94 18-113 211-318 (429)
496 PRK07069 short chain dehydroge 26.1 1.4E+02 0.0029 26.8 5.3 65 17-81 12-87 (251)
497 cd08779 Death_PIDD Death Domai 26.0 56 0.0012 24.9 2.2 28 342-369 10-37 (86)
498 PRK06947 glucose-1-dehydrogena 26.0 1.9E+02 0.004 25.9 6.2 66 16-81 14-88 (248)
499 TIGR01813 flavo_cyto_c flavocy 25.9 77 0.0017 31.7 3.8 30 8-37 2-32 (439)
500 PRK10084 dTDP-glucose 4,6 dehy 25.9 2.8E+02 0.0061 26.4 7.7 74 7-83 2-83 (352)
No 1
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=100.00 E-value=2e-100 Score=739.36 Aligned_cols=367 Identities=33% Similarity=0.551 Sum_probs=335.7
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC------------CchhhhccCCcceEEeeCCCcchHHHHH
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ------------PFVQDTVGYGKKSLCINLKKAKGLSVMK 68 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~------------~~~~~~~nrgK~sv~ldl~~~~g~~~~~ 68 (381)
.||+|+||||+++.++||+||++||||||||||||+|+++ +.+|.+.||||+||+||||++|||++++
T Consensus 6 ~pL~GirViel~~~~aGP~ag~~LaDlGAeVIKVE~P~~gD~~R~~~~~~~~s~~f~~~nR~K~Sv~lDlk~~egre~~~ 85 (396)
T COG1804 6 GPLEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVERPGGGDDTRVFAPVADGSAYFLALNRGKRSVALDLKTEEGREILL 85 (396)
T ss_pred CCCCceeeeeecccccChHHHhHHHHcCCcEEEecCCCCCCchhccccccCcchHHHHhcCCceEEEeecCCHhHHHHHH
Confidence 4899999999999999999999999999999999999843 2489999999999999999999999999
Q ss_pred HHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhcccccCCCCCCCCCCC
Q psy1367 69 NLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPC 148 (381)
Q Consensus 69 ~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~~~ 148 (381)
+|+++|||||||||||+|+|||||||+|+++||+||||||||||++|||+++||||.++||++|+++.+|.++++|.+++
T Consensus 86 ~Lv~~ADVlienfrpG~l~rlGl~ye~L~~~NP~LIy~sisGfGq~GP~~~~~gyD~~~qa~~Gl~~~tG~~~~~P~~~g 165 (396)
T COG1804 86 RLVAGADVLIENFRPGVLERLGLGYEALRAINPRLIYCSISGFGQTGPYADRPGYDLIAQAEAGLMSITGRPDGPPVPAG 165 (396)
T ss_pred HHHhhCceehcccchhHHHHhCCCHHHHHhhCCCeEEEEEeeCCCCCCCCCCCCccHHHHHhhCceeeccCCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhhhcccCCCCCCCCCCCCCCCccCeeeecCC
Q psy1367 149 NLAADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKD 228 (381)
Q Consensus 149 ~~~~d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~t~D 228 (381)
..++|+.+| ++++++||+||++|+|||+||+||+||+|++..+....+..+......+.+.++.+.. .++|++|+|+|
T Consensus 166 ~~i~D~~~G-l~~~~~iLaAL~~r~~tG~Gq~Id~am~d~~~~~~~~~~~~~~~~G~~p~~~g~~~~~-~~py~~y~~aD 243 (396)
T COG1804 166 VAIADLAGG-LYAAIGILAALLHRERTGRGQHIDVAMLDAAVSLLANQLMTYLATGKLPLRPGGAHPA-IAPYDVYRTAD 243 (396)
T ss_pred cchhhHHHH-HHHHHHHHHHHHHhccCCCCcEEEEeHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-CCCcCceECCC
Confidence 999999997 9999999999999999999999999999999988777666554433333343433333 34699999999
Q ss_pred CCEEEEEecCHHHHHHHHHHcCCCCC-CCCcc--------cHHHHHHHHHHHHhhcCHHHHHHHhhcCCCeEeeccChhh
Q psy1367 229 GRFMAVGALESQFYAQLLAGLGMTEE-ELPQH--------EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQ 299 (381)
Q Consensus 229 G~~v~l~~~~~~~w~~l~~~lG~~~~-~~~~~--------~~~~l~~~l~~~~~~~t~~ew~~~l~~a~vp~~~V~~~~e 299 (381)
|+|+++++.++++|++||+++|+++. .+++| |++++.++++++|+++|.+||.+.|++++|||+||++++|
T Consensus 244 G~~~~i~~~~d~~~~~lc~~lg~peL~~d~rfa~n~~R~~~r~~l~~~i~~~~~~~t~~e~~~~l~~~~vp~~~v~~~~e 323 (396)
T COG1804 244 GKLVALGAGNDKFWQALCELLGRPELADDPRFATNHARVANRDELDAILAAAFATNTAAEWAARLEAAGVPAAPVLTVAE 323 (396)
T ss_pred CCEEEEEeCChHHHHHHHHhcCCcccccCccccccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHhcCCCccccCCHHH
Confidence 98899999999999999999999974 35665 6899999999999999999999999999999999999999
Q ss_pred hhcCccccccccEEEcCCc---ceeccCCccccCCCCCCCCCCCCCCCCcCHHHHHHhCCCCHHHHHHHHhCCee
Q psy1367 300 ATSHPHNVHRGSFIPNRAG---VVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELIREDVI 371 (381)
Q Consensus 300 ~~~~p~~~~rg~~~~~~~g---~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~evL~elG~s~~~I~~L~~~gvi 371 (381)
++.|||+++|+++++++++ ..++.+|++|+++|.... +++|.+||||++||+++|||+++|++|+++|+|
T Consensus 324 ~~~~p~~~ar~~~~~~~~~~~~v~~~~~p~r~s~~~~~~~--~~~P~lG~~t~~vl~elg~s~~~i~~L~~~g~i 396 (396)
T COG1804 324 ALADPQLQARGLVVEVEGPGGTVPQPAPPPRFSGAPAGVM--RPPPALGEHTEAILAELGYSEREIAALKATGAI 396 (396)
T ss_pred HhhChhHHhhCcEEeccCCCcccccccCCccccCCCCCcC--CCCCCCCccHHHHHHHcCCCHHHHHHHHhcCCC
Confidence 9999999999999999872 456888899998887544 478999999999999999999999999999986
No 2
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=100.00 E-value=2.1e-97 Score=732.66 Aligned_cols=367 Identities=24% Similarity=0.352 Sum_probs=320.9
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC------CchhhhccCCcceEEeeCCCcchHHHHHHHHhcC
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ------PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~------~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
+||+||||||||+++|||+||++||||||||||||+|+++ +.+|.++|||||||+||||+|+||++|++|+++|
T Consensus 10 ~pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~p~~GD~~R~~~~~~~~~NrgKrsi~LDLk~~~Gr~~l~~Li~~A 89 (405)
T PRK03525 10 GPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETT 89 (405)
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHcCCcEEEECCCCCCCccccccchhhhccCCCeeEEEeCCCHHHHHHHHHHHHhC
Confidence 3899999999999999999999999999999999999632 2368889999999999999999999999999999
Q ss_pred CEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCC--CCCCCchHHHHHHhhhcccccCCCCCCCCCCCCccc
Q psy1367 75 DVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGP--YSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAA 152 (381)
Q Consensus 75 Dv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp--~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~~~~~~~ 152 (381)
||||||||||+++|||||||+|+++||+||||+|||||++|| |+++||||+++||+||+++.+|.++ +|..++.+++
T Consensus 90 DVvien~rpg~~~rlGl~~e~L~~~nP~LIy~sisgfG~~GP~p~~~~pg~D~~~qA~sG~~~~~G~~~-~P~~~~~~~~ 168 (405)
T PRK03525 90 DIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVD-QPMPAFPYTA 168 (405)
T ss_pred CEEEECCCccHHHHcCCCHHHHHHhCCCeEEEEeeECCCCCCccccCCCChhHHHHHHhChHhhcCCCC-CCCCCCccHh
Confidence 999999999999999999999999999999999999999995 9999999999999999999999885 5666677799
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhhhcccCCCCCC-CCCCCCCCCccCeeeecCCCCE
Q psy1367 153 DFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPR-GENLLDGGAHFYDTYETKDGRF 231 (381)
Q Consensus 153 d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~t~DG~~ 231 (381)
|+.+| +++++|||+|||+|++||+||+|||||+|+++++....+..+......+++ .++..+... +|++|+|+|| |
T Consensus 169 D~~~g-~~aa~~ilaAL~~R~~tG~Gq~VdvSm~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~-p~~~y~~~DG-~ 245 (405)
T PRK03525 169 DYFSG-LTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYA-GCGLYKCADG-Y 245 (405)
T ss_pred HHHHH-HHHHHHHHHHHHHhhcCCCccEEEeeHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-CCCceEcCCC-c
Confidence 99987 999999999999999999999999999999887655443322221111122 333333233 4899999999 8
Q ss_pred EEEEecCHHHHHHHHHHcCCCCC-CCCcc-------------cHHHHHHHHHHHHhhcCHHHHHHHhhcCCCeEeeccCh
Q psy1367 232 MAVGALESQFYAQLLAGLGMTEE-ELPQH-------------EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSL 297 (381)
Q Consensus 232 v~l~~~~~~~w~~l~~~lG~~~~-~~~~~-------------~~~~l~~~l~~~~~~~t~~ew~~~l~~a~vp~~~V~~~ 297 (381)
|++++.++++|++||++||++++ .+++| |++++.+.|++||+++|++||.++|.+++|||+||+++
T Consensus 246 i~i~~~~~~~w~~l~~~lg~~~l~~d~~f~~~~~~~~r~~~~~~~el~~~l~~~~~~~t~~ew~~~l~~~~vp~~pV~~~ 325 (405)
T PRK03525 246 IVMELVGITQIKECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVEARFAELNIACAKVLTI 325 (405)
T ss_pred EEEEECCHHHHHHHHHHhCCcccccCccccCccccchhhhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHcCCCEEecCCH
Confidence 99999999999999999998753 22222 56789999999999999999999999999999999999
Q ss_pred hhhhcCccccccccEEEcCC--c--ceeccCCccccCCCCCCCCCCCCCCCCcCHHHHHHhCCCCHHHHHHHHhCCeeec
Q psy1367 298 SQATSHPHNVHRGSFIPNRA--G--VVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELIREDVIEE 373 (381)
Q Consensus 298 ~e~~~~p~~~~rg~~~~~~~--g--~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~evL~elG~s~~~I~~L~~~gvi~~ 373 (381)
+|+++|||+++|++|+++++ | ..+++.|++|++++.... .++|.+||||++||+++||++++|++|+++|+|..
T Consensus 326 ~e~~~dp~~~~r~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~--~~aP~lGeht~~vL~~lG~~~~ei~~L~~~gvi~~ 403 (405)
T PRK03525 326 PELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIW--RGMPSHGMDTAAILKNIGYSEEDIQELVAKGLAKV 403 (405)
T ss_pred HHHhhCHHHHHhCCEEEEecCCCCeeEeecCCcccCCCCCCCC--CCCCCCCCCHHHHHHHcCCCHHHHHHHHHCcCEeC
Confidence 99999999999999999876 3 345777889998886443 36899999999999999999999999999999975
No 3
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=100.00 E-value=2.3e-96 Score=728.17 Aligned_cols=365 Identities=27% Similarity=0.407 Sum_probs=322.4
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC-CC-------------CchhhhccCCcceEEeeCCCcchHHH
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG-AQ-------------PFVQDTVGYGKKSLCINLKKAKGLSV 66 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~-~~-------------~~~~~~~nrgK~sv~ldl~~~~g~~~ 66 (381)
+||+||||||||+++|||+|+++||||||||||||+|. ++ +.+|.++|||||||+||||+++||++
T Consensus 3 ~pL~GirVldls~~~aGP~a~~lLAdlGA~VIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~NrgKrsi~lDLk~~eGr~~ 82 (416)
T PRK05398 3 KPLEGIKVLDFTHVQSGPSCTQLLAWFGADVIKVERPGVGDVTRNQLRDIPDVDSLYFTMLNSNKRSITLDTKTPEGKEV 82 (416)
T ss_pred CCCCCCEEEEeccHHHHHHHHHHHHHcCCCEEEecCCCCCCcccccCCCCCCcccHHHHHcCCCCeEEEeeCCCHHHHHH
Confidence 48999999999999999999999999999999999984 21 33688999999999999999999999
Q ss_pred HHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhcccccCCCCCCCCC
Q psy1367 67 MKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTP 146 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~ 146 (381)
|++|+++|||||||||||+++|||||||+|+++||+||||+|||||++|||+++|+||+++||+||+++.+|.++++|.+
T Consensus 83 l~~Lv~~ADVvien~rpg~~~rlGl~~e~L~~~nP~LI~~sisg~G~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~P~~ 162 (416)
T PRK05398 83 LEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLIVASIKGFGPGSPYEDVKAYENVAQCAGGAASTTGFWDGPPTV 162 (416)
T ss_pred HHHHHhcCCEEEECCCcchHHHcCCCHHHHHhhCcCEEEEEEeeCCCCCCCCCCCchHHHHHHhhchHhhcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhh------------hhcc-----cCCCCCC
Q psy1367 147 PCNLAADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTR------------TQDT-----FLWDKPR 209 (381)
Q Consensus 147 ~~~~~~d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~------------~~~~-----~~~~~~~ 209 (381)
++.+++|+.+| +++++|||+||++|+|||+||+|||||+|+++++....+. .+.. .....++
T Consensus 163 ~~~~~~D~~~g-~~aa~ailaAL~~R~rtG~Gq~VdvSl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (416)
T PRK05398 163 SGAALGDSNTG-MHLAIGILAALLQREKTGRGQRVTVSMQDAVLNLCRVKLRDQQRLDHLGYLEEYPQYPNGTFGDAVPR 241 (416)
T ss_pred CCcchhHHHHH-HHHHHHHHHHHHHhhccCCCcEEEeeHHHHHHHHHHhhhhhhcccccchhhhhhhhcccccCCCCCCC
Confidence 88899999997 9999999999999999999999999999998765432211 0110 0111233
Q ss_pred CCCCCCCCCccCeeeecC---CC--CEEEEEecCHHHHHHHHHHcCCCCC-CCCcc--------cHHHHHHHHHHHHhhc
Q psy1367 210 GENLLDGGAHFYDTYETK---DG--RFMAVGALESQFYAQLLAGLGMTEE-ELPQH--------EVETGRAKLTEKFKEK 275 (381)
Q Consensus 210 ~~~~~~~~~~~~~~y~t~---DG--~~v~l~~~~~~~w~~l~~~lG~~~~-~~~~~--------~~~~l~~~l~~~~~~~ 275 (381)
.++...... ++++|+|+ || +||.+++ ++++|++||++||++++ .+++| |++++.+.|++||+++
T Consensus 242 ~g~~~~~~~-p~~~y~~~~~~dg~~g~v~i~~-~~~~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~~ 319 (416)
T PRK05398 242 AGNASGGGQ-PGWILKCKGWETDPNAYIYFII-QPQGWEPICKAIGKPEWITDPAYATPEARQPHLFDIFAEIEKWTMTK 319 (416)
T ss_pred CCCCCCCCC-CCcceeeccccCCCCCEEEEEc-CHHHHHHHHHHhCChhhccCccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444 47999999 64 3999988 77999999999999874 35666 6788999999999999
Q ss_pred CHHHHHHHhhcCCCeEeeccChhhhhcCccccccccEEEcCC---c-ceeccCCccccCCCCCCCCCCCCCCCCcCHHHH
Q psy1367 276 TQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA---G-VVAPAPAPRLSRTPGTSKITEHNPAPGVHTREV 351 (381)
Q Consensus 276 t~~ew~~~l~~a~vp~~~V~~~~e~~~~p~~~~rg~~~~~~~---g-~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~ev 351 (381)
|.+||.++|++++|||+||++++|+++|||+++|++|+++++ | ..+++.|++|+++|... . ++|.+||||++|
T Consensus 320 t~~e~~~~l~~~~vp~~~V~~~~e~~~dpq~~~rg~~~~~~~p~~g~~~~~~~p~~~s~~~~~~-~--~aP~lGeht~~v 396 (416)
T PRK05398 320 TKFEAVDILNAFDIPCGPVLSMKEIAEDPSLRASGTIVEVDHPLRGKYLTVGSPIKLSDSPPDV-K--RSPLLGEHTDEV 396 (416)
T ss_pred CHHHHHHHHHHcCcCeeecCCHHHHhhCHHHHhcCCEEEecCCCCCceeeecCCeeeCCCCCCC-C--CCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999876 4 45678888999888643 2 589999999999
Q ss_pred HHhCCCCHHHHHHHHhCCee
Q psy1367 352 LRHFGYSDANIEELIREDVI 371 (381)
Q Consensus 352 L~elG~s~~~I~~L~~~gvi 371 (381)
|+++||++++|++|+++|+|
T Consensus 397 L~elG~~~~ei~~L~~~gvi 416 (416)
T PRK05398 397 LAELGYSDDQIAALKQNGAI 416 (416)
T ss_pred HHHcCCCHHHHHHHHHCCCC
Confidence 99999999999999999986
No 4
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=100.00 E-value=6e-96 Score=725.54 Aligned_cols=364 Identities=26% Similarity=0.400 Sum_probs=321.1
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC-CC-------------CchhhhccCCcceEEeeCCCcchHHH
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG-AQ-------------PFVQDTVGYGKKSLCINLKKAKGLSV 66 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~-~~-------------~~~~~~~nrgK~sv~ldl~~~~g~~~ 66 (381)
.||+||||||||+++|||+|+++||||||||||||+|+ ++ +.+|.++|||||||+||||+++|+++
T Consensus 2 ~pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~nr~Krsi~lDLk~~~g~~~ 81 (415)
T TIGR03253 2 KPLDGIKVLDFTHVQSGPSCTQMLAWLGADVIKIERPGVGDITRGQLRDIPDVDSLYFTMLNCNKRSITLNTKTPEGKEV 81 (415)
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHcCCcEEEeCCCCCCccccccCCCCCCcccHHHHHhCCCCeEEEeeCCCHHHHHH
Confidence 48999999999999999999999999999999999984 21 34689999999999999999999999
Q ss_pred HHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhcccccCCCCCCCCC
Q psy1367 67 MKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTP 146 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~ 146 (381)
|++|+++||||||||||++++||||||++|+++||+||||+|||||++|||+++||||+++||+||+++.+|.++++|.+
T Consensus 82 l~~Lv~~ADVvien~rpg~~~rlGL~~~~L~~~nP~LV~~sisgfG~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~P~~ 161 (415)
T TIGR03253 82 LEELIKKADVMVENFGPGALDRMGFTWEYIQEINPRLILASIKGFGEGSPYENVKAYENVAQAAGGAASTTGFWDGPPLV 161 (415)
T ss_pred HHHHHhhCCEEEECCCCChHHHcCCCHHHHHHhCCCeEEEEeeecCCCCCCCCCCcHHHHHHHHhchhhhcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhh------------hc-----ccCCCCCC
Q psy1367 147 PCNLAADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRT------------QD-----TFLWDKPR 209 (381)
Q Consensus 147 ~~~~~~d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~------------~~-----~~~~~~~~ 209 (381)
++.+++|+.+| +++++|||+||++|++||+||+|||||+|+++++....+.. +. .....+++
T Consensus 162 ~~~~~~D~~~g-~~aa~~ilaAL~~R~~tG~Gq~VdvSl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 240 (415)
T TIGR03253 162 SGAALGDSNTG-MHLMIGILAALYQREHTGRGQRVTVAMQDAVLNLCRVKLRDQQRLDRLGPLAEYPQYPNGAFGDAVPR 240 (415)
T ss_pred CCccHhHHHHH-HHHHHHHHHHHHHhhccCCCcEEEECcHHHHHHHHHHHHhhhhcccccccchhhhccccccCCCCCCC
Confidence 88899999987 99999999999999999999999999999987654322110 10 00111233
Q ss_pred CCCCCCCCCccCeeeecC------CCCEEEEEecCHHHHHHHHHHcCCCCC-CCCcc--------cHHHHHHHHHHHHhh
Q psy1367 210 GENLLDGGAHFYDTYETK------DGRFMAVGALESQFYAQLLAGLGMTEE-ELPQH--------EVETGRAKLTEKFKE 274 (381)
Q Consensus 210 ~~~~~~~~~~~~~~y~t~------DG~~v~l~~~~~~~w~~l~~~lG~~~~-~~~~~--------~~~~l~~~l~~~~~~ 274 (381)
.++...... +|++|+|+ || ||.+++.+ ++|++||++||++++ ++++| |++++.+.+++||++
T Consensus 241 ~g~~~~~~~-p~~~y~~~~~~~~~Dg-~v~i~~~~-~~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~ 317 (415)
T TIGR03253 241 GGNAGGGGQ-PGWILKCKGWETDPNA-YVYFTIQA-NNWEQICDMIGKPEWITDPAYATPEARQPKLNDIFAFIETYTAT 317 (415)
T ss_pred CCCCCCCCC-CCccccccccCcCCCC-eEEEEECh-HHHHHHHHHhCChhhccCcCCCChHHHHHhHHHHHHHHHHHHhc
Confidence 344333334 47899999 99 99998865 479999999999874 45665 678899999999999
Q ss_pred cCHHHHHHHhhcCCCeEeeccChhhhhcCccccccccEEEcCC---c-ceeccCCccccCCCCCCCCCCCCCCCCcCHHH
Q psy1367 275 KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRA---G-VVAPAPAPRLSRTPGTSKITEHNPAPGVHTRE 350 (381)
Q Consensus 275 ~t~~ew~~~l~~a~vp~~~V~~~~e~~~~p~~~~rg~~~~~~~---g-~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~e 350 (381)
+|++||.++|++++|||+||++++|+++|||+++|++|+++++ | ..+++.|++|+++|... . ++|.+||||++
T Consensus 318 ~t~~ew~~~l~~~~vp~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~~~P~~~s~~~~~~-~--~aP~lGeht~~ 394 (415)
T TIGR03253 318 KDKFEVTEWLNQYGIPCGPVLSMKEIAEDPSLRAVGTVVEVDQPIRGKYLTVGAPFKLSDFPPDI-K--RAPLLGEHTDE 394 (415)
T ss_pred CCHHHHHHHHHHcCcCeEecCCHHHHhhCHHHHhcCCEEEeeCCCCCeeeeecCCeeeCCCCCCC-C--CCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999876 4 45678888999888643 2 58999999999
Q ss_pred HHHhCCCCHHHHHHHHhCCee
Q psy1367 351 VLRHFGYSDANIEELIREDVI 371 (381)
Q Consensus 351 vL~elG~s~~~I~~L~~~gvi 371 (381)
||+++|||+++|++|+++|+|
T Consensus 395 vL~~lg~~~~eI~~L~~~g~i 415 (415)
T TIGR03253 395 VLKELGYDDDEIAELKASGVI 415 (415)
T ss_pred HHHHcCCCHHHHHHHHHCCCC
Confidence 999999999999999999986
No 5
>PRK11430 putative CoA-transferase; Provisional
Probab=100.00 E-value=1.1e-94 Score=707.37 Aligned_cols=350 Identities=25% Similarity=0.399 Sum_probs=310.0
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC-CC------------CchhhhccCCcceEEeeCCCcchHHHH
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG-AQ------------PFVQDTVGYGKKSLCINLKKAKGLSVM 67 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~-~~------------~~~~~~~nrgK~sv~ldl~~~~g~~~~ 67 (381)
.||+|+||||||+++|||+|+++||||||||||||+|+ ++ +.+|.++|||||||+||||+++||++|
T Consensus 8 ~pL~GirVldls~~~aGP~a~~~LAdlGAeVIKVE~p~~GD~~R~~~p~~~~~s~~f~~~NrgKrsv~lDLk~~~Gr~~~ 87 (381)
T PRK11430 8 GPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIF 87 (381)
T ss_pred CCcCCCEEEEeCCcchHHHHHHHHHHcCCCEEEECCCCCCccccccCCCCCCccHHHHHhCCCCeEEEecCCCHHHHHHH
Confidence 48999999999999999999999999999999999996 21 246899999999999999999999999
Q ss_pred HHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhcccccCCCCCCCCCC
Q psy1367 68 KNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPP 147 (381)
Q Consensus 68 ~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~~ 147 (381)
++|+++|||||||||||+++||||||++|+++||+||||+|||||++|||+++|+||+++||+||+++.+|.++++|.++
T Consensus 88 ~~L~~~ADVvien~rpg~~~rlGl~y~~L~~~nP~LI~~sisgfG~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~P~~~ 167 (381)
T PRK11430 88 INMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRV 167 (381)
T ss_pred HHHHhcCCEEEeCCCccHHHHcCCCHHHHHHHCCCceEEeeeeCCCCCCCCCCCCchHHHHHHhCHHHhcCCCCCCCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhhhcccCCCCCCCCCCCCCCCccCeeeecC
Q psy1367 148 CNLAADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETK 227 (381)
Q Consensus 148 ~~~~~d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~t~ 227 (381)
+.+++|+.+| +++++|||+||++|++||+||+|||||+|+++++.......+......+.+.++..+...| |++|+|+
T Consensus 168 ~~~~~D~~~g-~~aa~ailaAL~~R~~tG~Gq~VdvSl~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~p-~~~y~~~ 245 (381)
T PRK11430 168 GTSLADLCGG-VYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAP-FDVFDTQ 245 (381)
T ss_pred cchhhHHHHH-HHHHHHHHHHHHHHhcCCCeeEEEeeHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-CCceEcC
Confidence 8889999997 9999999999999999999999999999998765543332222211123344454444444 8999999
Q ss_pred CCCEEEEEecCHHHHHHHHHHcCCCCC-CCCcc--------cHHHHHHHHHHHHhhcCHHHHHHHhhcCCCeEeeccChh
Q psy1367 228 DGRFMAVGALESQFYAQLLAGLGMTEE-ELPQH--------EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLS 298 (381)
Q Consensus 228 DG~~v~l~~~~~~~w~~l~~~lG~~~~-~~~~~--------~~~~l~~~l~~~~~~~t~~ew~~~l~~a~vp~~~V~~~~ 298 (381)
|| ||+|++.++++|++||++||++++ ++++| |++++.+.|++||+++|.+||.++|++++||++||++++
T Consensus 246 DG-~i~i~~~~~~~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~~t~~e~~~~l~~~~vp~~pV~~~~ 324 (381)
T PRK11430 246 DK-PITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVA 324 (381)
T ss_pred CC-cEEEEeCCHHHHHHHHHHhCCcccccCcccCChHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcCcceEECCCHH
Confidence 99 899999999999999999999874 45666 678999999999999999999999999999999999999
Q ss_pred hhhcCccccccccEEEcCCcceeccCCccccCCCCCCCCCCCCCCCCcCHHHHHHhC
Q psy1367 299 QATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHF 355 (381)
Q Consensus 299 e~~~~p~~~~rg~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~evL~el 355 (381)
|+++|||+++|++++++. ...+++.|++|++++....+ .++|.+||||++||+++
T Consensus 325 e~~~dpq~~~rg~~~~~g-~~~~~~~p~~~~~~~~~~~~-~~aP~lGeht~evL~~~ 379 (381)
T PRK11430 325 EAINLPQTQARNMLIEAG-GIMMPGNPIKISGCADPHVM-PGAATLDQHGEQIRQEF 379 (381)
T ss_pred HHHHCHHHHHhCCEEEEC-CEEEecCCeeeCCCCCCCCC-CCCCCCCcCHHHHHHhh
Confidence 999999999999998873 25678888899988652222 35899999999999985
No 6
>KOG3957|consensus
Probab=100.00 E-value=3.8e-87 Score=608.85 Aligned_cols=371 Identities=46% Similarity=0.809 Sum_probs=335.5
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
|||+|||||||+...+||||||+||||||||||||+|+.. .-..+||||++.+|||+.++|...+++|++.+||+|++
T Consensus 3 ~pL~GIkVlelsglapgPfC~MvLaDfGA~V~~Vdr~~~~--~~~~l~rgk~~~~ldlk~p~~~~~l~~l~~~sdvllep 80 (387)
T KOG3957|consen 3 MPLSGIKVLELSGLAPGPFCGMVLADFGAEVTKVDRKNSN--DEDRLNRGKRMLVLDLKNPEGTQALRRLCKKSDVLLEP 80 (387)
T ss_pred cccCCcEEEEeccccCCchhhhhhhhcCceEEEecCCCCC--hHHHhcCCCCceeeeccCchhhHHHHHHHhccceeccC
Confidence 6999999999999999999999999999999999998743 55578999999999999999999999999999999999
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhcccccCCCCCCCCCCCCccchHHHHHHH
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLM 160 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~g~~~~~P~~~~~~~~d~~ag~~~ 160 (381)
|+||+|+|+||||++|++.||+||||+||||||+||++.++|||.+..|+||+|+.+|+.+++|.+|++.++|+++|+++
T Consensus 81 ~rpGtlEk~~lgp~~l~~~n~~LIyc~itGyGQtG~~sqraGhDiny~AlSGll~~~G~~~~~P~~P~n~laDfAgGgL~ 160 (387)
T KOG3957|consen 81 YRPGTLEKMGLGPEQLWKVNPKLIYCSITGYGQTGRMSQRAGHDINYSALSGLLHITGRRAGRPWAPGNALADFAGGGLY 160 (387)
T ss_pred CCCchHhhcCCCHHHHhccCCcEEEEEEecccccCchhhhcCcchhhhhhhcceeeecccCCCCCCchhhhhhhccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhhhcccCCCCCCCCCCCCCCCccCeeeecCCCCEEEEEecCHH
Q psy1367 161 CALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQ 240 (381)
Q Consensus 161 aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~t~DG~~v~l~~~~~~ 240 (381)
|+.||++|||+|-|||+||+||+||+|+.++++++++..+....|...| .+..+++.|+|..|+||||+++++++.+++
T Consensus 161 aa~gI~~AL~~RtrtgkGqviD~~m~eg~ayl~S~v~~~y~~s~~ea~R-~~~~~G~~~~Y~tykTkDG~fmavga~epQ 239 (387)
T KOG3957|consen 161 AAGGILAALYQRTRTGKGQVIDCNMLEGVAYLLSFVQKNYLQSLWEADR-YGTAHGSIPPYQTYKTKDGYFMAVGALEPQ 239 (387)
T ss_pred HHHHHHHHHHHHhccCCceEEEechhHhHHHHHHHHHHHhhhhhccccc-cccccCCCccceeeeccCceEEEeccccHH
Confidence 9999999999999999999999999999999999998888777676556 455677888999999999988888889998
Q ss_pred HHHHHHHHcCCCCCCCCcc--------cHHHHHHHHHHHHhhcCHHHHHHHhhcCCCeEeeccChhhhhcCccccccccE
Q psy1367 241 FYAQLLAGLGMTEEELPQH--------EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSF 312 (381)
Q Consensus 241 ~w~~l~~~lG~~~~~~~~~--------~~~~l~~~l~~~~~~~t~~ew~~~l~~a~vp~~~V~~~~e~~~~p~~~~rg~~ 312 (381)
+++.+.+.++...++.|.+ ||.++..++++.|.++|++||..+|+..++|++||++++||..++|.++||+|
T Consensus 240 F~~~l~~ll~~~~d~~p~~~tn~~rvtnr~E~~kil~e~f~~kT~~eW~~iFeG~d~cV~PVl~~~EV~~~~hn~~rgsf 319 (387)
T KOG3957|consen 240 FYELLKKLLGLKLDENPKQFTNPDRVTNRVELRKILEEVFLEKTRAEWSQIFEGQDACVTPVLDIHEVFHHDHNKDRGSF 319 (387)
T ss_pred HHHHHHHhhCcccccchhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCHHHhccccchhhccce
Confidence 8888888888876555554 68999999999999999999999999999999999999999999999999999
Q ss_pred EEcCC-c-ceeccCCccccCCCCCCCCCCCCCCCCcCHHHHHHhC-CCCHHHHHHHHhCCeeecc
Q psy1367 313 IPNRA-G-VVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHF-GYSDANIEELIREDVIEET 374 (381)
Q Consensus 313 ~~~~~-g-~~~~~~~~~~~~~p~~~~~~~~aP~lGeht~evL~el-G~s~~~I~~L~~~gvi~~~ 374 (381)
.+.+| + ...+.|.|++..+|......+.+|.+|+||.|||+|+ .|.+++|.+|..+++|.++
T Consensus 320 ~~~e~p~~~~i~~p~P~v~~s~~~~s~~~~p~i~~qht~eil~E~~~~~~~ei~~L~sd~iie~~ 384 (387)
T KOG3957|consen 320 TKTEHPTSDWIPVPGPRVLTSPAKPSAATDPPILGQHTEEILEELLFYRDDEIYQLLSDSIIESN 384 (387)
T ss_pred eeeccCCCccccCCCCccccCccccccccCCcccchhHHHHHHHhcCCChHHHHHHHhhhhhhhc
Confidence 99987 2 3445555555555654333346778888999999995 6666999999999998875
No 7
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=100.00 E-value=4.9e-54 Score=383.84 Aligned_cols=190 Identities=35% Similarity=0.598 Sum_probs=155.1
Q ss_pred EEeeCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhc
Q psy1367 54 LCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGI 133 (381)
Q Consensus 54 v~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~ 133 (381)
|+||||+|+||++|++||++||||||||||++++|||||||+|+++||+||||+|||||++|||+++++||+++||+||+
T Consensus 1 V~lDl~~~~gr~~l~~L~~~ADV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~isgfG~~Gp~~~~~~~d~~~qA~sG~ 80 (191)
T PF02515_consen 1 VALDLKSPEGRAALRRLLATADVVIENFRPGVLERLGLDYEALRAINPRLVYCSISGFGQDGPYADRPGYDLVAQAASGL 80 (191)
T ss_dssp EEEETTSHHHHHHHHHHHHT-SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEEESS-SSSTTTTS---HHHHHHHTTT
T ss_pred CEeeCcCHHHHHHHHHHHHhCCEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEEEeecCCCccccCCCCCcccccceee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-CCCCCCCccchHHHHHHHHHHHHHHHHHHhhhcCCceEEEcChhhHHHHhhhhHhhhhcccCCCCCCCCC
Q psy1367 134 LSLLGWRNR-NPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGEN 212 (381)
Q Consensus 134 ~~~~g~~~~-~P~~~~~~~~d~~ag~~~aa~gilaAL~~R~rtG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~ 212 (381)
++.+|.+++ +|.+++.+++|+.+| +++++++|+||++|+|||+||+|||||+|+++++....+..+......+.+.++
T Consensus 81 ~~~~g~~~~~~P~~~~~~~~D~~~g-~~aa~~ilaAL~~R~rtG~G~~vdvSl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (191)
T PF02515_consen 81 MSLTGEPDGGPPVRPGTPLADYAAG-LYAAIGILAALLRRERTGRGQRVDVSLLEAALALLSYPLADYLNGGRVPPRSGN 159 (191)
T ss_dssp GGGSS-TTSSEE---SSCTTHHHHH-HHHHHHHHHHHHHHHHHSS-EEEEEEHHHHHHHHTHHHHHHHHCTSSSSTTBST
T ss_pred eecccCCccccccccccchhHHHHH-HHHHHHHHHHHHHhccCCCeeEEEECHHHHHHHHhhHHHHHHHccCCCCCCCCC
Confidence 999987776 899999999999997 999999999999999999999999999999988776655444333233334444
Q ss_pred CCCCCCccCeeeecCCCCEEEEEecCHHHHHHH
Q psy1367 213 LLDGGAHFYDTYETKDGRFMAVGALESQFYAQL 245 (381)
Q Consensus 213 ~~~~~~~~~~~y~t~DG~~v~l~~~~~~~w~~l 245 (381)
.. ...++|++|+|+||+||+|++.++++|++|
T Consensus 160 ~~-~~~~~~~~y~~~DG~~v~i~~~~~~~w~~l 191 (191)
T PF02515_consen 160 RD-PSSAPYGVYRCADGRWVAIAALTDRQWRRL 191 (191)
T ss_dssp TC-SSSTTEEEEEETTC-EEEEE--SHHHHHHH
T ss_pred CC-CCCCCCCeEECCCCCEEEEEcCCHHHHhCc
Confidence 33 345569999999999999999999999986
No 8
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.94 E-value=0.073 Score=45.94 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|-+|+=++-..-|.-+++.|..+||.|+-+|.- |-...+....|-+... +.+.++++||||+.-
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~D--Pi~alqA~~dGf~v~~-----------~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEID--PIRALQAAMDGFEVMT-----------LEEALRDADIFVTAT 86 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHTT-EEE------------HHHHTTT-SEEEE-S
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECC--hHHHHHhhhcCcEecC-----------HHHHHhhCCEEEECC
Confidence 578999999998888999999999999999999963 2233444556666443 567889999999864
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
-... =|+.+.++....+-|.++++-|-.
T Consensus 87 G~~~----vi~~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 87 GNKD----VITGEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp SSSS----SB-HHHHHHS-TTEEEEESSSSTT
T ss_pred CCcc----ccCHHHHHHhcCCeEEeccCcCce
Confidence 3321 146799999999999999987754
No 9
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.83 E-value=0.22 Score=43.67 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
-|.|-+|.=++.+--|-..+++|.-||++|+-+.+...+...+... + +.. .-+.+++++||||+...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~--~---~~~--------~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF--G---VEY--------VSLDELLAQADIVSLHL 99 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT--T---EEE--------SSHHHHHHH-SEEEE-S
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc--c---cee--------eehhhhcchhhhhhhhh
Confidence 3788999999988789999999999999999999875422211111 1 111 12788999999999887
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-..--+-=|+.+.|++..|+-++++++
T Consensus 100 plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 100 PLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp SSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred ccccccceeeeeeeeeccccceEEEecc
Confidence 7544444567999999999999999976
No 10
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.62 E-value=0.12 Score=45.03 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=68.2
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCC----------------CcchHHHH
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLK----------------KAKGLSVM 67 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~----------------~~~g~~~~ 67 (381)
...+|+=++...+|--|.++|..|||+|+-++.-. .........+.+.+.++.. ...-...|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP--ERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH--HHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH--HHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 34688999999999999999999999999998531 1111111223333434211 23345689
Q ss_pred HHHHhcCCEEEeC-CCccH-HHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 68 KNLANQSDVILEP-FRKGV-MEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 68 ~~L~~~aDv~i~n-~~pg~-~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
.+.++.+|+||.| .-|+. .-+| +.-+.++..+|..|.++||.
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~l-vt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRL-VTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---S-BEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEE-EEhHHhhccCCCceEEEEEe
Confidence 9999999999853 33333 2233 77899999999999999987
No 11
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.36 E-value=1.2 Score=44.04 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
+.+-+|+=++.+..|-.+.+.|..+||+|+-+++... ..-.....-|+ .+..+..+ .+.+.+.++++||||+...
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~-~~~~l~~~~g~-~v~~~~~~---~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID-RLRQLDAEFGG-RIHTRYSN---AYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHhcCc-eeEeccCC---HHHHHHHHccCCEEEEccc
Confidence 4566788888888999999999999999888875321 00000001122 23333322 4568888999999998752
Q ss_pred -ccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 83 -KGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 83 -pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
|+.-...=++.+.++...|+-++++++-
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence 2321111257888999999999999884
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.19 E-value=2.7 Score=40.42 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|--.+++|.-||.+|+-+.+..... . + .+..-+.+|+++||||+-..+
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~-----~---------~----~~~~~l~ell~~sDiv~l~~P 206 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV-----C---------R----EGYTPFEEVLKQADIVTLHCP 206 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc-----c---------c----cccCCHHHHHHhCCEEEEcCC
Confidence 788898888877778888999999999999886532100 0 0 012238999999999998876
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==|+.+.|....|+-+.++++
T Consensus 207 lt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 207 LTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred CChHHhcccCHHHHHhCCCCeEEEECC
Confidence 444444458899999999999999987
No 13
>PRK04148 hypothetical protein; Provisional
Probab=88.54 E-value=2 Score=35.98 Aligned_cols=97 Identities=22% Similarity=0.156 Sum_probs=70.0
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCc
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~p 83 (381)
++.||+|++.+ .|.-.+..|+++|.+|+-|+--.. ..-...+.+-..+.-|+-+|.. ++-+.||++.+-.+|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~--aV~~a~~~~~~~v~dDlf~p~~-----~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK--AVEKAKKLGLNAFVDDLFNPNL-----EIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH--HHHHHHHhCCeEEECcCCCCCH-----HHHhcCCEEEEeCCC
Confidence 46889999988 787778899999999999995432 2222334456778889999975 577899999988877
Q ss_pred cHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 84 GVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 84 g~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
.-|.+-=+ +--++++=.|++..++|
T Consensus 88 ~el~~~~~--~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 88 RDLQPFIL--ELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHH--HHHHHcCCCEEEEcCCC
Confidence 77765211 22346676777766654
No 14
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.45 E-value=2.7 Score=40.50 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|--.+++|.-||.+|+-+.++..+.. + ...-+.+|+++||||+-..+
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~-~------------------~~~~l~ell~~sDiv~l~lP 206 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPAR-P------------------DRLPLDELLPQVDALTLHCP 206 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCccc-c------------------cccCHHHHHHhCCEEEECCC
Confidence 6788888888777788889999999999998876532110 0 01238999999999998876
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==|+.+.+....|+-+.+.++
T Consensus 207 lt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 207 LTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred CChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 554455568999999999999999887
No 15
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.29 E-value=2.3 Score=40.52 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=65.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
+.|-||+=++.+..|-.+.+.|..+||+|+-+.+... ...+ ....|-+.+. -+.+.++++++||||+..+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~-~~~~-~~~~G~~~~~--------~~~l~~~l~~aDiVI~t~p 219 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA-HLAR-ITEMGLSPFH--------LSELAEEVGKIDIIFNTIP 219 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH-HHHH-HHHcCCeeec--------HHHHHHHhCCCCEEEECCC
Confidence 5788999999888898899999999999988865421 1111 1112322221 1346788899999999865
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
+.. ++.+.+....|+-+.++++-
T Consensus 220 ~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 220 ALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred hhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 443 45577888889999998874
No 16
>PLN02928 oxidoreductase family protein
Probab=87.59 E-value=3.8 Score=40.08 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCch--hhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFV--QDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~--~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
|.|-+|.=++-+--|-..++.|.-||.+|+-+.+....... +......=..+.-... ...-+.+++++||||+..
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG---GHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC---cccCHHHHHhhCCEEEEC
Confidence 78889888887777888899999999999998764221110 0000000000000000 123488999999999988
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.+-..--+-=|+.+.+....|+-++++++
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 75433334446889999999999999987
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.44 E-value=4 Score=39.29 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=65.7
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|--.++.|..+|.+|+-+.+...... +-..+ . +.+.+.+++++||||+...+
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-------~~~~~----~---~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-------GVQSF----A---GREELSAFLSQTRVLINLLP 199 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-------Cceee----c---ccccHHHHHhcCCEEEECCC
Confidence 6788888777665677778899999999998875431111 10000 1 12348899999999998876
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+-=++.+.+....|+-+.+.++
T Consensus 200 lt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 200 NTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred CCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 544333335788999999999999887
No 18
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.71 E-value=2.9 Score=42.96 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCC-----------------cchHHH
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK-----------------AKGLSV 66 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~-----------------~~g~~~ 66 (381)
.+-||+=++.+..|=.+.+.+..+||+|+-++.-.. ..-....-|-+.+.+|.+. ..-++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~--rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE--VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 356899999888899999999999999888876432 1111111233444555421 122345
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
+.+.++++||+|+.- -||.-.-.=+.-+.++...|+=++|+++.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 667778899999987 34422211256678999999999999986
No 19
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=86.58 E-value=1.3 Score=40.58 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=63.1
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCc---EEEEccCC-----CCC------chhhhccCCcceEEeeCCCcchHHHH
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGAT---VIRIDKHG-----AQP------FVQDTVGYGKKSLCINLKKAKGLSVM 67 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~---VikvE~p~-----~~~------~~~~~~nrgK~sv~ldl~~~~g~~~~ 67 (381)
+|++-||+=++.+-+|--+...|++.|+. |+-+.+.+ ... ..|.. ..+++. .+ . -+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~-~~~~~~--~~------~-~l 91 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK-ETNPEK--TG------G-TL 91 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH-HhccCc--cc------C-CH
Confidence 58899999999999999999999999996 66666652 110 01111 111111 11 0 14
Q ss_pred HHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 68 KNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 68 ~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.+.++++||||..-.+|. ++.+.++..+|+-|+..++
T Consensus 92 ~~~l~~~dvlIgaT~~G~-----~~~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 92 KEALKGADVFIGVSRPGV-----VKKEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHhcCCEEEeCCCCCC-----CCHHHHHhhCCCCEEEEeC
Confidence 456678999999887765 4468888888887777777
No 20
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=85.32 E-value=3.6 Score=36.45 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=46.6
Q ss_pred CCCCcEEEE-eCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCC-cchHHHHHHHHhcCCEEEe
Q psy1367 2 ALKGITVLE-FAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK-AKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld-~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~-~~g~~~~~~L~~~aDv~i~ 79 (381)
|++.||+|. .|++--|-..+..+...||+|+-|-.|..... .. ..-.++..+ .+=.+.+.+++.++|++|.
T Consensus 16 ~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-----p~--~~~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 16 PIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-----PP--GVKVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp ESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------T--TEEEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred cCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-----cc--cceEEEecchhhhhhhhccccCcceeEEE
Confidence 578888887 45666788889999999999999998742111 11 223344444 4456678888899999987
Q ss_pred C
Q psy1367 80 P 80 (381)
Q Consensus 80 n 80 (381)
+
T Consensus 89 a 89 (185)
T PF04127_consen 89 A 89 (185)
T ss_dssp -
T ss_pred e
Confidence 5
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=84.96 E-value=1.3 Score=40.63 Aligned_cols=71 Identities=24% Similarity=0.277 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh---cCCEEEe
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN---QSDVILE 79 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~---~aDv~i~ 79 (381)
|.|.||||++-+ |-.-+.-||.+||.|+-+.-...+ .-...+..-+-.+.+|..... ..+|+. +.|||+.
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~-I~~Ak~ha~e~gv~i~y~~~~----~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKP-IEVAKLHALESGVNIDYRQAT----VEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHH-HHHHHHhhhhccccccchhhh----HHHHHhcCCCccEEEE
Confidence 789999999985 557889999999999999865432 122223333334445544432 455554 7999997
Q ss_pred C
Q psy1367 80 P 80 (381)
Q Consensus 80 n 80 (381)
.
T Consensus 131 m 131 (243)
T COG2227 131 M 131 (243)
T ss_pred h
Confidence 4
No 22
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=84.95 E-value=4.8 Score=38.70 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|--.+++|.-||.+|+-..+..... +..+. ..-+.+|+++||||+-..+
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------~~~~~--------~~~l~ell~~sDvv~lh~P 205 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------NEEYE--------RVSLEELLKTSDIISIHAP 205 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------ccCce--------eecHHHHhhcCCEEEEeCC
Confidence 788888888877678888899999999999998743210 00011 1238899999999988776
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==|+.+.+....|+-+.++++
T Consensus 206 lt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 206 LNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred CCchhhcccCHHHHHhCCCCeEEEECC
Confidence 444444568999999999999999887
No 23
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.02 E-value=5.6 Score=37.75 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|+=++.+-.|-..++.|..+|++|+-+.+.... .-.....|-..+ ..+.+.++++++||||...+
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~--~~~~~~~g~~~~--------~~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD--LARITEMGLIPF--------PLNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHCCCeee--------cHHHHHHHhccCCEEEECCC
Confidence 67889999998888989999999999999877654211 000011121111 12346788899999999764
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
-.. ++.+.+....|+.+.++++-
T Consensus 219 ~~i-----i~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 219 ALV-----LTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred hHH-----hCHHHHhcCCCCeEEEEeCc
Confidence 432 35677888889999989874
No 24
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=83.87 E-value=2.8 Score=38.37 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCC-cEEEEccCCCC--CchhhhccCCcceEEeeCCCcchHHHHHHHHhc-CCEE
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGA-TVIRIDKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ-SDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA-~VikvE~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~-aDv~ 77 (381)
|=+|-||||.|..+ -|.+---..-|| .||-||.-..- -....-|.|+=+++.+++=.-+.-+.++++=.. .|++
T Consensus 132 ~~~G~rVLDtC~GL--GYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGL--GYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCc--cHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34689999999987 455666678899 99999964321 112233567766666666666666667776654 8999
Q ss_pred EeCC
Q psy1367 78 LEPF 81 (381)
Q Consensus 78 i~n~ 81 (381)
|++-
T Consensus 210 iHDP 213 (287)
T COG2521 210 IHDP 213 (287)
T ss_pred eeCC
Confidence 9973
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=82.96 E-value=7 Score=39.73 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|-+|+=++.+--|-.+++.|..+|++||-+|..... ... ....|-+.+ -+.++++.|||||..-
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~-a~~-A~~~G~~~~-----------~leell~~ADIVI~at 317 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC-ALQ-AAMEGYQVV-----------TLEDVVETADIFVTAT 317 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh-HHH-HHhcCceec-----------cHHHHHhcCCEEEECC
Confidence 478999999998878888999999999999998764211 101 111232211 1567889999999863
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
|. +-=|+.+.+....|+-|.+.++-|
T Consensus 318 --Gt--~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 --GN--KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --Cc--ccccCHHHHhccCCCcEEEEcCCC
Confidence 32 223577999999999999998644
No 26
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=82.78 E-value=4.7 Score=36.91 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCCCcEEEE-eCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLE-FAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld-~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
|++.||+|. .|++.-|-..++.|+..|++|+-+-.+..... + ...+-+.+.++. ..+-.+.+.+.+...|+||+|
T Consensus 13 ~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~-~--~~~~v~~i~v~s-~~~m~~~l~~~~~~~DivIh~ 88 (229)
T PRK06732 13 PIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP-E--PHPNLSIIEIEN-VDDLLETLEPLVKDHDVLIHS 88 (229)
T ss_pred ccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC-C--CCCCeEEEEEec-HHHHHHHHHHHhcCCCEEEeC
Confidence 688999998 66666688888899999999999965421111 0 012223333321 122245566777889999998
Q ss_pred CC
Q psy1367 81 FR 82 (381)
Q Consensus 81 ~~ 82 (381)
--
T Consensus 89 AA 90 (229)
T PRK06732 89 MA 90 (229)
T ss_pred Cc
Confidence 53
No 27
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.14 E-value=9.1 Score=37.17 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|-..++.|..+|.+|+-+.+..... ... ..|.+ . .-+.+++++||+|+-..+
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~--~~~~~-------~----~~l~ell~~aDiV~l~lP 213 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEK--ELGAE-------Y----RPLEELLRESDFVSLHVP 213 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHH--HcCCE-------e----cCHHHHHhhCCEEEEeCC
Confidence 788899888877778888999999999999887643211 111 11111 1 127789999999998876
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+-=++.+.+....|+-+.++++
T Consensus 214 ~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 214 LTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred CChHHhhccCHHHHhcCCCCeEEEECc
Confidence 444333336788999999999999886
No 28
>PLN02494 adenosylhomocysteinase
Probab=82.13 E-value=5.6 Score=40.41 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|+=++.+--|-.+++.|..+|++||-+|.... ........|-..+ + +.++++.+||||++
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~--r~~eA~~~G~~vv--~---------leEal~~ADVVI~t-- 316 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI--CALQALMEGYQVL--T---------LEDVVSEADIFVTT-- 316 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--hhHHHHhcCCeec--c---------HHHHHhhCCEEEEC--
Confidence 6899999999888899999999999999999986431 1111112222211 1 34567889999984
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeCC
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgfG 112 (381)
+|.. --++.+.+....|+-|++.++-|+
T Consensus 317 TGt~--~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 317 TGNK--DIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred CCCc--cchHHHHHhcCCCCCEEEEcCCCC
Confidence 2321 113578999999999999997776
No 29
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=81.47 E-value=5.1 Score=39.82 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=47.5
Q ss_pred CCCCcEEEEe-CCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchH-HHHH-HHHhcCCEEE
Q psy1367 2 ALKGITVLEF-AGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGL-SVMK-NLANQSDVIL 78 (381)
Q Consensus 2 pL~GvrVld~-~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~-~~~~-~L~~~aDv~i 78 (381)
|++.||+|.- |++--|-..++.|+..||+|+-|-.+.... .. ......|+.+.+.. +.+. ++....|++|
T Consensus 198 ~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~-----~~--~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i 270 (390)
T TIGR00521 198 PIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL-----TP--PGVKSIKVSTAEEMLEAALNELAKDFDIFI 270 (390)
T ss_pred CCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC-----CC--CCcEEEEeccHHHHHHHHHHhhcccCCEEE
Confidence 4555555553 233357888999999999999998664311 11 11256788888775 4344 5566789999
Q ss_pred eC
Q psy1367 79 EP 80 (381)
Q Consensus 79 ~n 80 (381)
.|
T Consensus 271 ~~ 272 (390)
T TIGR00521 271 SA 272 (390)
T ss_pred Ec
Confidence 87
No 30
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.40 E-value=3.9 Score=36.12 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc--CCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG--YGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n--rgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
.|+|-+|+=++ ..-.|..+.+.|+..|++|+-+-+.... ......++ .+-+....|..+. +.+.+.++++|+|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~diV 101 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDD---AARAAAIKGADVV 101 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCH---HHHHHHHhcCCEE
Confidence 46788999997 4677888899999999999888643210 11111111 1223444555543 4467788999999
Q ss_pred EeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCC
Q psy1367 78 LEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 78 i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG 112 (381)
|..-.-+.. .-...-...+|..|.+++.--.
T Consensus 102 i~at~~g~~----~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 102 FAAGAAGVE----LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred EECCCCCce----echhhhcccCceeEEEEccCCC
Confidence 987665553 1111112334566788876433
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.33 E-value=8 Score=38.89 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|+=++-+--|-.+++.|..+|++||-++.... ...... ..|.+.+ + +.++++.+||||+.-
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~-ra~~A~-~~G~~v~--~---------l~eal~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI-CALQAA-MDGFRVM--T---------MEEAAELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch-hhHHHH-hcCCEec--C---------HHHHHhCCCEEEECC-
Confidence 6789999999888888999999999999999986431 111111 1233311 1 346677999999874
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
|... -++.+.+....|+-|.+.+.-|..
T Consensus 276 -G~~~--vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 276 -GNKD--VITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -CCHH--HHHHHHHhcCCCCCEEEEcCCCCC
Confidence 2211 245678888899999999887753
No 32
>PLN03139 formate dehydrogenase; Provisional
Probab=81.25 E-value=9 Score=38.03 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|-=++.+--|--.++.|..+|.+|+-..+...+...+... | .+.. +-+.+|+++||||+.+.+
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~--g-------~~~~---~~l~ell~~sDvV~l~lP 264 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET--G-------AKFE---EDLDAMLPKCDVVVINTP 264 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc--C-------ceec---CCHHHHHhhCCEEEEeCC
Confidence 778888777766567778888999999998887543221111111 1 1111 128899999999998875
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==++.+.|....|+-++++++
T Consensus 265 lt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 265 LTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 322222225789999999999998876
No 33
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.98 E-value=2.2 Score=35.57 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC--CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
.|+|-||+=++.+-++-.+...|+++|++-|.|=+.... ......+ .+...-..++.+ +.+.+.++||||.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-~~~~~~~~~~~~------~~~~~~~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-GGVNIEAIPLED------LEEALQEADIVIN 81 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-TGCSEEEEEGGG------HCHHHHTESEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-CccccceeeHHH------HHHHHhhCCeEEE
Confidence 478999999999999999999999999995555433211 1122222 222223334332 4478899999998
Q ss_pred CCCccHHHHcCCCHHHHhhhCCCc-EEEEEe
Q psy1367 80 PFRKGVMEKLQLGPDVLCKSNPRL-IYARLS 109 (381)
Q Consensus 80 n~~pg~~~~lGl~~~~l~~~nP~l-I~~~is 109 (381)
.-.-+.. -+..+.+....+++ ++++++
T Consensus 82 aT~~~~~---~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 82 ATPSGMP---IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp -SSTTST---SSTHHHHTTTCHHCSEEEES-
T ss_pred ecCCCCc---ccCHHHHHHHHhhhhceeccc
Confidence 8655533 56778888877766 778885
No 34
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.79 E-value=5.4 Score=38.68 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|.+|.=++.+.-|--.++.|..+|.+|+-+.+.......+ .+. ..-+.+++++||+|+...
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-------------~~~---~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-------------LTY---KDSVKEAIKDADIISLHV 206 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-------------hhc---cCCHHHHHhcCCEEEEeC
Confidence 3788888888877778778889999999999887543110000 000 112788999999999888
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHh-hhcc
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGL-SGIL 134 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~-sG~~ 134 (381)
+-..--+--++.+.+....|+-|+++++ .|+.- ..+.++.|+ +|-.
T Consensus 207 P~t~~t~~li~~~~l~~mk~gavlIN~a----RG~~v---d~~aL~~aL~~g~i 253 (330)
T PRK12480 207 PANKESYHLFDKAMFDHVKKGAILVNAA----RGAVI---NTPDLIAAVNDGTL 253 (330)
T ss_pred CCcHHHHHHHhHHHHhcCCCCcEEEEcC----Ccccc---CHHHHHHHHHcCCe
Confidence 6543222225678889999999999887 45432 334455554 4544
No 35
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=80.65 E-value=11 Score=36.51 Aligned_cols=93 Identities=9% Similarity=0.036 Sum_probs=66.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHH-hcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILN-EFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~La-dlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
|.|-+|-=++-+--|-..+++|. -||.+|+-..+...+... . ..|.+.+ -+.+|+++||||+-..
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~--~~~~~~~-----------~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE-E--RFNARYC-----------DLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH-H--hcCcEec-----------CHHHHHHhCCEEEEeC
Confidence 77888877776666877888887 899999966554221111 1 1122111 1789999999998877
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-..--+==++.+.|....|+-+.+.++
T Consensus 209 plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 209 PLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred CCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 6554445567899999999999999987
No 36
>PRK06436 glycerate dehydrogenase; Provisional
Probab=80.64 E-value=10 Score=36.24 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=64.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
-|.|-+|.=++-+--|--.+++|.-+|.+|+-+.+..... + .+. . ..-+.+++++||+|+...
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~-~~~-~---------~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------G-ISS-I---------YMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------C-ccc-c---------cCCHHHHHhhCCEEEECC
Confidence 3778888888877667666789999999999888642110 0 000 0 012778999999999887
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-..--+==|+.+.|....|+-++++++
T Consensus 182 p~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 182 PLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred CCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 6444333335789999999999999986
No 37
>PRK07574 formate dehydrogenase; Provisional
Probab=80.42 E-value=11 Score=37.50 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|.+|.=++-+--|-..++.|.-+|.+|+-..+...+....... +.+.. .-+.+++++||||+.+.+
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~---------g~~~~---~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL---------GLTYH---VSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc---------Cceec---CCHHHHhhcCCEEEEcCC
Confidence 788888888877667777889999999999887643211111111 11111 127899999999998876
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==|+.+.+....|+-+.++++
T Consensus 258 lt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 258 LHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 333222225889999999999998877
No 38
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.41 E-value=7.1 Score=33.98 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCCcEEEEeCCcc-cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLA-PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~-agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
.|+|-+|+=++..- .|..+.+.|...||+|+-+.+. . +.+.+.+.+|||||..
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~----------------------~----~~l~~~l~~aDiVIsa 94 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK----------------------T----KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC----------------------c----hhHHHHHhhCCEEEEc
Confidence 37899999999774 5887889999999987755532 0 3477899999999987
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-.-. . + ++.+.++ +..++++++
T Consensus 95 t~~~--~-i-i~~~~~~---~~~viIDla 116 (168)
T cd01080 95 VGKP--G-L-VKGDMVK---PGAVVIDVG 116 (168)
T ss_pred CCCC--c-e-ecHHHcc---CCeEEEEcc
Confidence 5332 1 3 6666654 368888887
No 39
>PLN02306 hydroxypyruvate reductase
Probab=78.64 E-value=11 Score=37.40 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCcccHHHHHHHHH-hcCCcEEEEccCCCCC-chh-hhcc-----CCcceEEeeCCCcchHHHHHHHHhcC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILN-EFGATVIRIDKHGAQP-FVQ-DTVG-----YGKKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~La-dlGA~VikvE~p~~~~-~~~-~~~n-----rgK~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
|.|-+|.=++.+--|-..+++|+ -||++|+-..+..... ..+ ..++ .+-.. .+.+. ..-+.+|+++|
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~---~~~L~ell~~s 237 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQP--VTWKR---ASSMEEVLREA 237 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccccccccc--ccccc---cCCHHHHHhhC
Confidence 77888888887777888888885 8999999887643211 000 0111 00000 01111 12389999999
Q ss_pred CEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHh-hh
Q psy1367 75 DVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGL-SG 132 (381)
Q Consensus 75 Dv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~-sG 132 (381)
|||+-..+-..--+-=|+.+.|....|+-+.+.++ .|+.= -.+.++.|+ +|
T Consensus 238 DiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a----RG~lV---De~AL~~AL~sg 289 (386)
T PLN02306 238 DVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS----RGPVI---DEVALVEHLKAN 289 (386)
T ss_pred CEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC----Ccccc---CHHHHHHHHHhC
Confidence 99887654333333447899999999999999988 45433 234455553 44
No 40
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.51 E-value=62 Score=30.72 Aligned_cols=74 Identities=11% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++. +.|--.+++|...||.|+-+- .+++ -+.+.+++|||||..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h----------------------s~t~----~l~~~~~~ADIvV~A 207 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH----------------------ILTK----DLSFYTQNADIVCVG 207 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe----------------------CCcH----HHHHHHHhCCEEEEe
Confidence 6788888888876 667666777778899987662 1121 267899999999976
Q ss_pred C-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 F-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
. +|+. +..+-+ .|+-|.+++.
T Consensus 208 vG~p~~-----i~~~~v---k~GavVIDvG 229 (285)
T PRK14191 208 VGKPDL-----IKASMV---KKGAVVVDIG 229 (285)
T ss_pred cCCCCc-----CCHHHc---CCCcEEEEee
Confidence 5 2332 344444 5787877765
No 41
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.03 E-value=8.4 Score=35.32 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhc-cCCcceEEeeCCCcchHHHHH-HHH---hc
Q psy1367 2 ALKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGAQPFVQDTV-GYGKKSLCINLKKAKGLSVMK-NLA---NQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~-nrgK~sv~ldl~~~~g~~~~~-~L~---~~ 73 (381)
.|+|-+||=.+.. --|-..++.|+..|++||-+-+..........+ +..-..+.+|+.+++..+.+. ++. ..
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4677777766642 347888999999999999875431111111112 122356889999988766443 333 34
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
-|+||.|-
T Consensus 84 iD~lv~nA 91 (252)
T PRK06079 84 IDGIVHAI 91 (252)
T ss_pred CCEEEEcc
Confidence 79999884
No 42
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.98 E-value=9.6 Score=34.20 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
|.|.|-+++=.+ ..--|...++.|++.|++||-+.+...... ...-..+.+|+.++ .+.+.+.+...|+||+
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-----~~~~~~~~~D~~~~--~~~~~~~~~~id~lv~ 73 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL-----SGNFHFLQLDLSDD--LEPLFDWVPSVDILCN 73 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc-----CCcEEEEECChHHH--HHHHHHhhCCCCEEEE
Confidence 457777777665 222377788889999999999876432111 11123566788776 4444555567888888
Q ss_pred CC
Q psy1367 80 PF 81 (381)
Q Consensus 80 n~ 81 (381)
|-
T Consensus 74 ~a 75 (235)
T PRK06550 74 TA 75 (235)
T ss_pred CC
Confidence 74
No 43
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.61 E-value=3.3 Score=40.92 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=55.0
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhcc--CCcc-eEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVG--YGKK-SLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~n--rgK~-sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
+.+-+|||+..+. |.+ +..||..|++|+-||--... .-....| .++- .+.. ...+-.+.+..+..+.|+||-
T Consensus 232 ~~~~~vLDL~cG~-G~~-~l~la~~~~~v~~vE~~~~a-v~~a~~N~~~~~~~~~~~--~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGV-GGF-GLHCAGPDTQLTGIEIESEA-IACAQQSAQMLGLDNLSF--AALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCc-cHH-HHHHhhcCCeEEEEECCHHH-HHHHHHHHHHcCCCcEEE--EECCHHHHHHhcCCCCCEEEE
Confidence 4577999999874 544 56677889999999954311 1011111 1111 1111 122222223333356899888
Q ss_pred CCCccHHHHcCCCHHH---HhhhCC-CcEEEEEe
Q psy1367 80 PFRKGVMEKLQLGPDV---LCKSNP-RLIYARLS 109 (381)
Q Consensus 80 n~~pg~~~~lGl~~~~---l~~~nP-~lI~~~is 109 (381)
| +|. -|++.+. |.+.+| ++||+|..
T Consensus 307 D-PPr----~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 N-PPR----RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred C-CCC----CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 8 442 3777665 556676 89998864
No 44
>PRK07060 short chain dehydrogenase; Provisional
Probab=77.14 E-value=8.6 Score=34.66 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+++|-+|+=++. ..-|....+.|+..|++|+-+.+.... ........+...+..|+.+++..+.+.+-....|+||+|
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAA-LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 467778877663 345888899999999999988754211 000000113446778998876544333333457888876
Q ss_pred C
Q psy1367 81 F 81 (381)
Q Consensus 81 ~ 81 (381)
-
T Consensus 85 a 85 (245)
T PRK07060 85 A 85 (245)
T ss_pred C
Confidence 4
No 45
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=77.13 E-value=15 Score=35.28 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred CCCCcEEEEeCC--cccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-h--ccCC-cceEEeeCCCcchHHHHHHHHhcC
Q psy1367 2 ALKGITVLEFAG--LAPAPFCGMILNEFGATVIRIDKHGA-QPFVQD-T--VGYG-KKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 2 pL~GvrVld~~~--~~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-~--~nrg-K~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
.|+|+||.=++. .+ ...-..+|+-+|++|.-+-|++- +...+. . ...| |-.++=| +.+.+++|
T Consensus 149 ~l~gl~i~~vGd~~~v-~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~~a~~~a 218 (304)
T PRK00779 149 SLKGLKVAWVGDGNNV-ANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHD---------PKEAVKGA 218 (304)
T ss_pred CcCCcEEEEEeCCCcc-HHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcC---------HHHHhCCC
Confidence 378999887775 22 23335678999999999998763 222221 1 1123 2222222 67788999
Q ss_pred CEEEeCC----C--------ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 75 DVILEPF----R--------KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 75 Dv~i~n~----~--------pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
|||...- + -.....++++.+-+...+|+.|+.+--
T Consensus 219 Dvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 219 DVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred CEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 9999751 1 112356889989888889998887743
No 46
>PRK06841 short chain dehydrogenase; Provisional
Probab=77.07 E-value=10 Score=34.53 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCc-ceEEeeCCCcchHHHHHHHH----hcCC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGK-KSLCINLKKAKGLSVMKNLA----NQSD 75 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK-~sv~ldl~~~~g~~~~~~L~----~~aD 75 (381)
.|.|-+||=.+ ..--|-..++.|++.|++||-+.+...........+..+ ..+.+|+.+++..+.+.+-+ ...|
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d 91 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRID 91 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 35677777665 233377888889999999998876432111111122111 36788999988765443322 3579
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 92 ~vi~~a 97 (255)
T PRK06841 92 ILVNSA 97 (255)
T ss_pred EEEECC
Confidence 999875
No 47
>PRK06125 short chain dehydrogenase; Provisional
Probab=76.82 E-value=9.3 Score=35.00 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc----cCCcceEEeeCCCcchHHHHHHHHhcC
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV----GYGKKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~----nrgK~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
|.|+|-+||=.+. .--|...++.|+..|++|+-+.+.... ......+ +..-..+.+|+.+++..+.+.+-....
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 3567766666552 234677788889999999998754211 1111111 112245678999988876666555667
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|++|+|-
T Consensus 83 d~lv~~a 89 (259)
T PRK06125 83 DILVNNA 89 (259)
T ss_pred CEEEECC
Confidence 8888763
No 48
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.50 E-value=17 Score=37.47 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCC-------------cch----HHH
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK-------------AKG----LSV 66 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~-------------~~g----~~~ 66 (381)
.|-||+=++.+.+|=.+.+.+.-+||+|+-++.-.. ..-....-|-+.+.+|.+. ++- ++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~--rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE--VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 478999999999999999999999999888875421 1111111232223333321 111 223
Q ss_pred HHHHHhcCCEEEeCCC-ccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 67 MKNLANQSDVILEPFR-KGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~~-pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
+.+.++.+||+|+.-. |+...-.-+.-+.++...|+=+.++++.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 3444567999999873 3311111113477888899988888876
No 49
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=76.42 E-value=14 Score=36.01 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
-|+|-.||=.+-..-|.=|++.|..+||+||-.|--. -.......-|=+.+.+ .+-+..+||||+.-
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP--I~AleA~MdGf~V~~m-----------~~Aa~~gDifiT~T 272 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP--IRALEAAMDGFRVMTM-----------EEAAKTGDIFVTAT 272 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCc--hHHHHHhhcCcEEEEh-----------HHhhhcCCEEEEcc
Confidence 3678888888888889999999999999999988432 2233344555555554 45567899999863
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
|.-+ =|..|++.+..-+.|.|.+.=|
T Consensus 273 --Gnkd--Vi~~eh~~~MkDgaIl~N~GHF 298 (420)
T COG0499 273 --GNKD--VIRKEHFEKMKDGAILANAGHF 298 (420)
T ss_pred --CCcC--ccCHHHHHhccCCeEEeccccc
Confidence 2222 2567888888888888876544
No 50
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.10 E-value=14 Score=33.62 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=48.5
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCC
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSD 75 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aD 75 (381)
|.|+|-+||=.+ ..--|....+.|++.|++|+-+.+.... ...+.+-..+.+|+.+++..+.+.+-+ ...|
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 77 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLD 77 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 456777766555 2233777888899999999988654321 111223346788999887654333222 3459
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 78 ~vi~~a 83 (252)
T PRK07856 78 VLVNNA 83 (252)
T ss_pred EEEECC
Confidence 999874
No 51
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.02 E-value=9.7 Score=38.05 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.+.|-+|+=++-+--|-.+++.|..+|++||-+|.... ........|-+.+ + +.++++.+||||+.-
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~--r~~~A~~~G~~v~--~---------leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI--RALEAAMDGFRVM--T---------MEEAAKIGDIFITAT 258 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh--hHHHHHhcCCEeC--C---------HHHHHhcCCEEEECC
Confidence 36899999999888899999999999999999984321 1111112232221 1 234668899999853
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
|... -++.+.+....|+-|++.++-|..
T Consensus 259 --G~~~--vI~~~~~~~mK~GailiN~G~~~~ 286 (406)
T TIGR00936 259 --GNKD--VIRGEHFENMKDGAIVANIGHFDV 286 (406)
T ss_pred --CCHH--HHHHHHHhcCCCCcEEEEECCCCc
Confidence 2211 144577888889999998877743
No 52
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.36 E-value=10 Score=38.17 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=52.2
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhc-cCCcceEEeeCCCcchHHHHHHHHh----cCC
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV-GYGKKSLCINLKKAKGLSVMKNLAN----QSD 75 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~-nrgK~sv~ldl~~~~g~~~~~~L~~----~aD 75 (381)
|++|-+||=.+. .--|...++.|+..|++||-+..+......-... ..+.+.+.+|+.+++..+.+.+.+. ..|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 466777776653 3347788889999999999987653221111111 1133578899999887665555443 479
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 287 ~vi~~A 292 (450)
T PRK08261 287 IVVHNA 292 (450)
T ss_pred EEEECC
Confidence 999884
No 53
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=75.27 E-value=3.4 Score=39.73 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCc-ceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGK-KSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK-~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+.+-+|||++.+. |.+ +..||..|++|+-||.-... ...-.....++ ..+.+ ...+-.+.....-...|+||-|
T Consensus 172 ~~~~~VLDl~cG~-G~~-sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~--~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 172 LPPRSMWDLFCGV-GGF-GLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQF--QALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred cCCCEEEEccCCC-CHH-HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEE--EEcCHHHHHHhcCCCCeEEEEC
Confidence 4578999999875 555 67788899999999965321 00001111111 11222 2222223332233468999988
Q ss_pred CCccHHHHcCCCHHH---HhhhCC-CcEEEEEee
Q psy1367 81 FRKGVMEKLQLGPDV---LCKSNP-RLIYARLSG 110 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~---l~~~nP-~lI~~~isg 110 (381)
+| |-|++.+. |.+..| ++||+|...
T Consensus 248 -PP----r~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 248 -PP----RRGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred -CC----CCCccHHHHHHHHHcCCCeEEEEECCc
Confidence 44 44665443 444444 788877654
No 54
>PLN02342 ornithine carbamoyltransferase
Probab=74.36 E-value=18 Score=35.37 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=62.1
Q ss_pred CCCCcEEEEeCCcccH-HHHHHHHHhcCCcEEEEccCCC-CCc-hhhhc-cCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFAGLAPA-PFCGMILNEFGATVIRIDKHGA-QPF-VQDTV-GYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~~~ag-p~~~~~LadlGA~VikvE~p~~-~~~-~~~~~-nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
.|+|+||.=++...-. .---..|+-+|++|+-+-|++- +.. ..... +.|+.++.+- .-+.+.+++||||
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~-------~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT-------NDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE-------cCHHHHhCCCCEE
Confidence 4789999887763221 2235578899999999988762 222 22111 2332123221 1166778999999
Q ss_pred EeC----CC--c------cHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 78 LEP----FR--K------GVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 78 i~n----~~--p------g~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
... +. . .....++++.+-+...+|+.|+.+--
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 976 21 1 11234888888888888888776643
No 55
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.08 E-value=15 Score=35.09 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|.=++.. +-|--.+++|...||+|+-+.+... -+.+++++|||||..
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------------~l~e~~~~ADIVIsa 209 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------------DAKALCRQADIVVAA 209 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------------CHHHHHhcCCEEEEe
Confidence 5788888888874 6676667777788999998743311 277889999999987
Q ss_pred CC-ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FR-KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~-pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.. |+..+ .+- +.|+-|.++++
T Consensus 210 vg~~~~v~-----~~~---ik~GaiVIDvg 231 (301)
T PRK14194 210 VGRPRLID-----ADW---LKPGAVVIDVG 231 (301)
T ss_pred cCChhccc-----Hhh---ccCCcEEEEec
Confidence 52 22221 121 67888988876
No 56
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.08 E-value=13 Score=34.68 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCCCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCC-C---CchhhhccCCcceEEeeCCCcchHHHHHHHH--
Q psy1367 1 MALKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGA-Q---PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA-- 71 (381)
Q Consensus 1 ~pL~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~-~---~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~-- 71 (381)
|.|+|-+||=.+.. --|-..++.|+..|+.||-+-+... . ......++ ++..+.+|+.+++..+.+.+-+
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG-SDYVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CceEEEecCCCHHHHHHHHHHHHH
Confidence 45777666666531 2378889999999999997643211 0 11111122 2357889999998766444433
Q ss_pred --hcCCEEEeCC
Q psy1367 72 --NQSDVILEPF 81 (381)
Q Consensus 72 --~~aDv~i~n~ 81 (381)
..-|+||+|-
T Consensus 80 ~~g~iDilVnnA 91 (274)
T PRK08415 80 DLGKIDFIVHSV 91 (274)
T ss_pred HcCCCCEEEECC
Confidence 3469999874
No 57
>PRK09620 hypothetical protein; Provisional
Probab=74.06 E-value=8.7 Score=35.18 Aligned_cols=75 Identities=13% Similarity=0.005 Sum_probs=45.1
Q ss_pred CCCCcEEEE-eCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCC-cchHHHHHHHHh--cCCEE
Q psy1367 2 ALKGITVLE-FAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKK-AKGLSVMKNLAN--QSDVI 77 (381)
Q Consensus 2 pL~GvrVld-~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~-~~g~~~~~~L~~--~aDv~ 77 (381)
+++.||.|. .|++.-|.+.++.|...||+|+-|..+...... ....+-+.+. ..+ .+-++.+.+++. .+|+|
T Consensus 16 ~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~--~~~~~~~~~~--V~s~~d~~~~l~~~~~~~~~D~V 91 (229)
T PRK09620 16 KWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN--DINNQLELHP--FEGIIDLQDKMKSIITHEKVDAV 91 (229)
T ss_pred CcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc--ccCCceeEEE--EecHHHHHHHHHHHhcccCCCEE
Confidence 456677776 556677899999999999999999765321111 0111111111 222 222356777774 58999
Q ss_pred EeC
Q psy1367 78 LEP 80 (381)
Q Consensus 78 i~n 80 (381)
|+.
T Consensus 92 IH~ 94 (229)
T PRK09620 92 IMA 94 (229)
T ss_pred EEC
Confidence 985
No 58
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.76 E-value=12 Score=34.14 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=48.1
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCc--hhhhccCCcceEEeeCCCcchHHHHHHHH----hcC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPF--VQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQS 74 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~--~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~a 74 (381)
.|+|-+||=.+ ..--|-..++.|++.|++|+-+.+...... .....+..=..+.+|+.+++..+.+.+-+ ..-
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 46676666555 222377888999999999998754321111 11112222235788999988765444333 346
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|-
T Consensus 85 D~lv~~a 91 (251)
T PRK12481 85 DILINNA 91 (251)
T ss_pred CEEEECC
Confidence 8888874
No 59
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=73.76 E-value=7.9 Score=36.74 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=51.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCC----CCCchhhhcc-CC--cceEEeeCCCcchHHHHHHHHhcC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHG----AQPFVQDTVG-YG--KKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~----~~~~~~~~~n-rg--K~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
++|-+|+=++..-+|..+...|+++|+. |+-+.+.. .....-..++ ++ ......|+.++ +.+.+.++.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~---~~~~~~~~~~ 200 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDT---EKLKAEIASS 200 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhh---hHHHhhhccC
Confidence 5677888898888888889999999998 66655432 1011111111 11 12334566543 3466778889
Q ss_pred CEEEeCCCccH
Q psy1367 75 DVILEPFRKGV 85 (381)
Q Consensus 75 Dv~i~n~~pg~ 85 (381)
|+||.|-+.|.
T Consensus 201 DilINaTp~Gm 211 (289)
T PRK12548 201 DILVNATLVGM 211 (289)
T ss_pred CEEEEeCCCCC
Confidence 99999887775
No 60
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=73.19 E-value=13 Score=36.69 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|-+|-=++-+--|--.++.|..||.+|+-..|+.... +.. .. ..-+.+|+++||||+-..
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~--------~~~---~~------~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR--------GDE---GD------FRSLDELVQEADILTFHT 175 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc--------ccc---cc------cCCHHHHHhhCCEEEEeC
Confidence 4788888888877778888999999999999997653210 100 01 123889999999998443
Q ss_pred --Cc-cHHHH-cCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHh-hh
Q psy1367 82 --RK-GVMEK-LQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGL-SG 132 (381)
Q Consensus 82 --~p-g~~~~-lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~-sG 132 (381)
.+ |..+. -=++.+.|....|+-|+++++ .|+--| -+.+++|+ +|
T Consensus 176 PLt~~g~~~T~~li~~~~l~~mk~gailIN~a----RG~vVD---e~AL~~aL~~g 224 (378)
T PRK15438 176 PLFKDGPYKTLHLADEKLIRSLKPGAILINAC----RGAVVD---NTALLTCLNEG 224 (378)
T ss_pred CCCCCcccccccccCHHHHhcCCCCcEEEECC----CchhcC---HHHHHHHHHhC
Confidence 33 22222 236789999999999999987 455333 33455553 44
No 61
>PRK08605 D-lactate dehydrogenase; Validated
Probab=72.36 E-value=20 Score=34.79 Aligned_cols=92 Identities=9% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHH-HhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMIL-NEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~L-adlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
|.|.+|.=++.+.-|-..++.| ..+|.+|+-..+..... + . ..+ +.. .-+.+++++||+|+...
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~---~---~~~----~~~---~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A---A---TYV----DYK---DTIEEAVEGADIVTLHM 208 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H---H---hhc----ccc---CCHHHHHHhCCEEEEeC
Confidence 7788888888776677677777 57999999876532111 1 0 001 111 12788999999999887
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-....+-=++.+.+....|+.|+++++
T Consensus 209 P~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 209 PATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred CCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 5554444445677888999999999988
No 62
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=72.22 E-value=15 Score=33.29 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=50.2
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhc-cCCc--ceEEeeCCCcchHHHHHHHH----h
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV-GYGK--KSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
+.|+|-+||=.+. .--|-.+++.|++.|++|+-+-+... ....... ..+. ..+.+|+.+++..+.+.+-+ .
T Consensus 1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP-SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3577777777763 23377889999999999999875431 1111111 1122 45778999988765433322 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 80 ~~d~li~~a 88 (248)
T TIGR01832 80 HIDILVNNA 88 (248)
T ss_pred CCCEEEECC
Confidence 578888873
No 63
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=72.13 E-value=15 Score=33.50 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSD 75 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aD 75 (381)
.|++-+||=.+ ..--|..+++.|++.|++|+-+.+.... ......++..-..+.+|+.+++..+.+.+-+ ...|
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 35666666554 2333888999999999999988654311 1112222333445778999888765433322 3578
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 83 ~li~~a 88 (257)
T PRK07067 83 ILFNNA 88 (257)
T ss_pred EEEECC
Confidence 888763
No 64
>PRK08264 short chain dehydrogenase; Validated
Probab=71.90 E-value=20 Score=32.19 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCC-cEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGA-TVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA-~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+.+-+||=.+ ...-|....+.|+..|+ +|+-+-+......- ...+=..+..|+.+++..+.+.+-+...|+||++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 80 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN 80 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence 4455666665 34457888899999999 99988765321110 1122235778999988766555555567899888
Q ss_pred CCc
Q psy1367 81 FRK 83 (381)
Q Consensus 81 ~~p 83 (381)
...
T Consensus 81 ag~ 83 (238)
T PRK08264 81 AGI 83 (238)
T ss_pred CCc
Confidence 543
No 65
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.58 E-value=14 Score=33.64 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=50.8
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCc--ceEEeeCCCcchHHHH----HHHHhcC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGK--KSLCINLKKAKGLSVM----KNLANQS 74 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK--~sv~ldl~~~~g~~~~----~~L~~~a 74 (381)
.|++-+|+=.+ ..--|....+.|++.|++|+-+-+.............++ ..+..|+.+++..+.+ .+.....
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 36677777666 223377888888999999999886432111111112233 5688899998864432 2223568
Q ss_pred CEEEeCCC
Q psy1367 75 DVILEPFR 82 (381)
Q Consensus 75 Dv~i~n~~ 82 (381)
|+||++-.
T Consensus 88 d~vi~~ag 95 (264)
T PRK12829 88 DVLVNNAG 95 (264)
T ss_pred CEEEECCC
Confidence 99999864
No 66
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=71.36 E-value=14 Score=36.95 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchH-HHHHHHHhcCCEEEeC
Q psy1367 14 LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGL-SVMKNLANQSDVILEP 80 (381)
Q Consensus 14 ~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~-~~~~~L~~~aDv~i~n 80 (381)
+.-|-..++.|+..||+|+-+-.+..... . +....+|..+.+.- +.+.+.+...|+||.|
T Consensus 214 G~~G~aiA~~l~~~Ga~V~~v~~~~~~~~----~---~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~ 274 (399)
T PRK05579 214 GKMGYALARAAARRGADVTLVSGPVNLPT----P---AGVKRIDVESAQEMLDAVLAALPQADIFIMA 274 (399)
T ss_pred chHHHHHHHHHHHCCCEEEEeCCCccccC----C---CCcEEEccCCHHHHHHHHHHhcCCCCEEEEc
Confidence 44588899999999999999976542111 0 11345788875542 2334445678999987
No 67
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.21 E-value=14 Score=35.05 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=54.2
Q ss_pred CCCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
.|+|-+|+=++.. +.|-..+++|...||+|+-+.+.. .-+.+.+++|||||..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------------------hhHHHHHhhCCEEEEC
Confidence 5889999999974 378777888889999999775321 1377889999999987
Q ss_pred CC-ccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 81 FR-KGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 81 ~~-pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
.. |+. +..+. +.|+.|.+++.-
T Consensus 209 vg~p~~-----i~~~~---vk~gavVIDvGi 231 (286)
T PRK14175 209 VGKPGL-----VTKDV---VKEGAVIIDVGN 231 (286)
T ss_pred CCCCcc-----cCHHH---cCCCcEEEEcCC
Confidence 53 222 34443 467888888763
No 68
>PRK06398 aldose dehydrogenase; Validated
Probab=71.21 E-value=25 Score=32.29 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHH-HHHHH---hcCCE
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSV-MKNLA---NQSDV 76 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~---~~aDv 76 (381)
.|+|-+||=.+. .--|-..++.|++.|++||-+-+..... ..-..+.+|+.+++..+. +.++. ..-|+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~ 75 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDI 75 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------CceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 467777776662 2337788999999999999876543211 133467889999877543 33332 24788
Q ss_pred EEeC
Q psy1367 77 ILEP 80 (381)
Q Consensus 77 ~i~n 80 (381)
||+|
T Consensus 76 li~~ 79 (258)
T PRK06398 76 LVNN 79 (258)
T ss_pred EEEC
Confidence 8876
No 69
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=71.16 E-value=26 Score=33.86 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|.+|-=++-+--|--.++.|.-||.+||-..|-.... ....+..+ +.+-|.+|+++||||+.-.
T Consensus 140 l~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~--~~~~~~~~-----------~~~~Ld~lL~~sDiv~lh~- 205 (324)
T COG0111 140 LAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE--RAGVDGVV-----------GVDSLDELLAEADILTLHL- 205 (324)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh--hhccccce-----------ecccHHHHHhhCCEEEEcC-
Confidence 567777777766668889999999999999998722111 00001111 1233899999999988654
Q ss_pred ccHHHHc-CCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKL-QLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~l-Gl~~~~l~~~nP~lI~~~is 109 (381)
|-+-+.- =|+.+.+.+..|.-|.+..+
T Consensus 206 PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 206 PLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred CCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 3333333 46899999999999888876
No 70
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=70.90 E-value=24 Score=35.29 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|-=++-+--|-..++.|.-||.+|+-..+..... .. + + + ...-+.+|+++||+|+-..+
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~-~---~----~---~~~~l~ell~~sDiVslh~P 212 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG-N---A----R---QVGSLEELLAQSDVVSLHVP 212 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC-C---c----e---ecCCHHHHHhhCCEEEEcCC
Confidence 778888888877678888899999999999988642100 00 0 0 0 01138899999999988865
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+-=++.+.|....|+-+.+.++
T Consensus 213 lt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 213 ETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred CChHHhhccCHHHHhcCCCCeEEEECC
Confidence 444344446889999999999998887
No 71
>PRK05867 short chain dehydrogenase; Provisional
Probab=70.86 E-value=15 Score=33.43 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=49.3
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHH-HH---h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKN-LA---N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~-L~---~ 72 (381)
+|+|-+||=.+. .--|....+.|++.|++|+-+.+.... ......+ +..-..+.+|+.+++..+.+.+ +. .
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466767766652 233788889999999999988654211 1111111 1122357789999887654333 22 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 86 ~id~lv~~a 94 (253)
T PRK05867 86 GIDIAVCNA 94 (253)
T ss_pred CCCEEEECC
Confidence 689999884
No 72
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=70.78 E-value=21 Score=34.12 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=25.8
Q ss_pred CCCCcEEEEeCC---cccHHHHHHHHHhcCCcEEEE
Q psy1367 2 ALKGITVLEFAG---LAPAPFCGMILNEFGATVIRI 34 (381)
Q Consensus 2 pL~GvrVld~~~---~~agp~~~~~LadlGA~Vikv 34 (381)
.|+|-++|=.+. .--|-.+++.||+.||+||-.
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~ 41 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVG 41 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 477887777654 223888999999999999873
No 73
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=70.61 E-value=11 Score=34.47 Aligned_cols=73 Identities=7% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCCcEEEEe-CCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHH----HHhcCCE
Q psy1367 2 ALKGITVLEF-AGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKN----LANQSDV 76 (381)
Q Consensus 2 pL~GvrVld~-~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~----L~~~aDv 76 (381)
|++.||.|.- |..--|...++.|+..||+|+-+-.+.... .. ....+|+.+.+..+.+.+ .....|+
T Consensus 12 ~iD~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~----~~----~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi 83 (227)
T TIGR02114 12 PIDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALK----PE----PHPNLSIREIETTKDLLITLKELVQEHDI 83 (227)
T ss_pred CCCCceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcc----cc----cCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence 6788998874 344558889999999999999885321100 00 013468877766654433 2346899
Q ss_pred EEeCCC
Q psy1367 77 ILEPFR 82 (381)
Q Consensus 77 ~i~n~~ 82 (381)
||+|--
T Consensus 84 LVnnAg 89 (227)
T TIGR02114 84 LIHSMA 89 (227)
T ss_pred EEECCE
Confidence 999863
No 74
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.58 E-value=30 Score=34.73 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=60.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|+=++.+--|-.+.+.+..+||+||-+|.... ...+ ...-|-..+ + +.+.++.+||||+.-
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~-R~~~-A~~~G~~~~--~---------~~e~v~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI-CALQ-AAMEGYEVM--T---------MEEAVKEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh-hHHH-HHhcCCEEc--c---------HHHHHcCCCEEEECC-
Confidence 6789999999887888999999999999999986421 1111 111122111 1 124567899999874
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
|... -+..+.+....|+-+++.++-|
T Consensus 266 -G~~~--~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 -GNKD--IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -CCHH--HHHHHHHhcCCCCcEEEEeCCC
Confidence 2221 1334567788888888887633
No 75
>KOG1270|consensus
Probab=70.55 E-value=3.5 Score=38.41 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=31.7
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
+||.|.+|||++.+ |.+-+.-||.+||.|+-|+...
T Consensus 86 k~~~g~~ilDvGCG--gGLLSepLArlga~V~GID~s~ 121 (282)
T KOG1270|consen 86 KPLLGMKILDVGCG--GGLLSEPLARLGAQVTGIDASD 121 (282)
T ss_pred cccCCceEEEeccC--ccccchhhHhhCCeeEeecccH
Confidence 58999999999985 6788999999999999998653
No 76
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.54 E-value=22 Score=32.37 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=47.4
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
.|+|-+||=.+ ..--|-..++.|++.|++|+-+-.... .........+-..+.+|+.+++..+.+.+-+ ...|+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-NEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46676666665 233377889999999999987643211 1111111123456888999988765444333 24688
Q ss_pred EEeC
Q psy1367 77 ILEP 80 (381)
Q Consensus 77 ~i~n 80 (381)
||+|
T Consensus 83 li~~ 86 (255)
T PRK06463 83 LVNN 86 (255)
T ss_pred EEEC
Confidence 8876
No 77
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.52 E-value=20 Score=32.91 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=50.1
Q ss_pred CCCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCCC----CchhhhccCCcceEEeeCCCcchHHHHHHHH---
Q psy1367 2 ALKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGAQ----PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 2 pL~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~~----~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~--- 71 (381)
.|+|-+||=.+.. --|-.+++.|++.|++|+-+-+.... ......++ ....+.+|+.+++..+.+.+-+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHHH
Confidence 4677777776632 24788899999999999887543211 01111111 2346789999998877554444
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
..-|+||.|-
T Consensus 86 ~g~ld~lv~nA 96 (258)
T PRK07533 86 WGRLDFLLHSI 96 (258)
T ss_pred cCCCCEEEEcC
Confidence 3468888873
No 78
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.89 E-value=34 Score=34.38 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhh-hc-cCCcceEEeeCCCcchHHHHHHHHh--cCCEEE
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQD-TV-GYGKKSLCINLKKAKGLSVMKNLAN--QSDVIL 78 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~-~~-nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i 78 (381)
|+|.||+=++...-.-....+|.|||.+|+.+-..-..+..|. .. .-....+.++- + ....+.++++ ..|++|
T Consensus 298 L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~--~-d~~e~~~~i~~~~pDlii 374 (421)
T cd01976 298 LEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYDD--V-THYELEEFVKRLKPDLIG 374 (421)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEcC--C-CHHHHHHHHHHhCCCEEE
Confidence 7899998765322222334689999999998643211111111 10 11122333332 2 2333444443 589999
Q ss_pred eCCCccH-HHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHH
Q psy1367 79 EPFRKGV-MEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDIN 126 (381)
Q Consensus 79 ~n~~pg~-~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~ 126 (381)
-+.+... ..|+|+-. +++..+...+||..+.|.-.+
T Consensus 375 g~~~~~~~a~k~giP~------------~~~~~~~~~~~~~Gy~G~~~~ 411 (421)
T cd01976 375 SGIKEKYVFQKMGIPF------------RQMHSWDYSGPYHGFDGFAIF 411 (421)
T ss_pred ecCcchhhhhhcCCCe------------EeCCccccCCCccchhhHHHH
Confidence 8876544 34466644 344334324576555554333
No 79
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=69.80 E-value=29 Score=33.81 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred CCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEccCCC-CCchhh-hc------cCCcceEEeeCCCcchHHHHHHHHh
Q psy1367 2 ALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDKHGA-QPFVQD-TV------GYGKKSLCINLKKAKGLSVMKNLAN 72 (381)
Q Consensus 2 pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~p~~-~~~~~~-~~------nrgK~sv~ldl~~~~g~~~~~~L~~ 72 (381)
.|+|++|.=++..-- ....-.+|+-+|++|.-+-|++- ++..+. .. +.++-.++=| +.+.++
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~eav~ 221 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDD---------VDEAVK 221 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcC---------HHHHhC
Confidence 388999988776221 23336678899999999988762 222221 11 1222222222 667899
Q ss_pred cCCEEEeCC-----Cc-----cHHH----HcCCCHHHHhhhCCCcEEEEEee
Q psy1367 73 QSDVILEPF-----RK-----GVME----KLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 73 ~aDv~i~n~-----~p-----g~~~----~lGl~~~~l~~~nP~lI~~~isg 110 (381)
+||||...- .. ..++ .+.++.+-|...+|+.|+.+--+
T Consensus 222 ~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP 273 (338)
T PRK02255 222 DADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP 273 (338)
T ss_pred CCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence 999999832 11 1122 36777777777778777766443
No 80
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=69.65 E-value=19 Score=32.88 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCc--ceEEeeCCCcchHHHHHH-HH---hcCC
Q psy1367 3 LKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGK--KSLCINLKKAKGLSVMKN-LA---NQSD 75 (381)
Q Consensus 3 L~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK--~sv~ldl~~~~g~~~~~~-L~---~~aD 75 (381)
|+|-++|=.+.. --|...++.|++.|++|+-+.........-.....+. ..+.+|+.+++..+.+.+ +. ...|
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D 87 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID 87 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 556666665522 2377888999999999997744321111111111122 356789988765543322 22 3478
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 88 ~li~~A 93 (253)
T PRK08993 88 ILVNNA 93 (253)
T ss_pred EEEECC
Confidence 888874
No 81
>PLN02371 phosphoglucosamine mutase family protein
Probab=68.91 E-value=16 Score=38.47 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=45.1
Q ss_pred CCCCcEE-EEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEE
Q psy1367 2 ALKGITV-LEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVIL 78 (381)
Q Consensus 2 pL~GvrV-ld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i 78 (381)
+++++|| +|..+..++.++..+|.+||++|+ ++--..++..|-..+ -|...++..+.+.+++++ ||+-|
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~v~-~~~~~~pDg~Fp~~~-------P~P~~~~~l~~l~~~v~~~~aDlGi 331 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGADTS-GSLFLEPDGMFPNHI-------PNPEDKAAMSATTQAVLANKADLGI 331 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCCeE-eeccCCCCCCCCCcC-------CCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3567775 789999999999999999999999 543333445553221 223334445556666643 67655
Q ss_pred e
Q psy1367 79 E 79 (381)
Q Consensus 79 ~ 79 (381)
-
T Consensus 332 a 332 (583)
T PLN02371 332 I 332 (583)
T ss_pred E
Confidence 3
No 82
>PRK05717 oxidoreductase; Validated
Probab=68.88 E-value=17 Score=33.13 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=50.5
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHH-HHHHHh---cCC
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSV-MKNLAN---QSD 75 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~~---~aD 75 (381)
.|+|-+||=.+. ..-|....+.|++.|++|+-+-+.... ...-...+..-..+.+|+.+++..+. +.++.+ ..|
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 478888887662 334788889999999999988543211 11111122223467899999877543 344433 469
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 87 ~li~~a 92 (255)
T PRK05717 87 ALVCNA 92 (255)
T ss_pred EEEECC
Confidence 999885
No 83
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.79 E-value=21 Score=33.87 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=++. .+-|--.+++|...||+|+-..+.. | -+.+.+++|||||..
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~--------------~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------R--------------NLAEVARKADILVVA 208 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------C--------------CHHHHHhhCCEEEEe
Confidence 578888888876 5666444566667899998762111 0 167889999999987
Q ss_pred C-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 F-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
. .|+..+. +- +.|+-|+++++
T Consensus 209 vg~~~~v~~-----~~---ik~GavVIDvg 230 (284)
T PRK14179 209 IGRGHFVTK-----EF---VKEGAVVIDVG 230 (284)
T ss_pred cCccccCCH-----HH---ccCCcEEEEec
Confidence 5 3333222 22 67888888774
No 84
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.69 E-value=19 Score=32.50 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-C-chhhhccCCcc--eEEeeCCCcchHHHHHHHH----
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-P-FVQDTVGYGKK--SLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~-~~~~~~nrgK~--sv~ldl~~~~g~~~~~~L~---- 71 (381)
|.|.|-+||=.+. .--|..+.+.|++.|++||-+.+.... . ..-...+.+.+ .+.+|+.+++..+.+.+-+
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4577888887663 334778888899999999998754311 1 11111122433 4788998877654433333
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|.
T Consensus 81 ~~id~vi~~a 90 (253)
T PRK08217 81 GQLNGLINNA 90 (253)
T ss_pred CCCCEEEECC
Confidence 3468888874
No 85
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=68.15 E-value=15 Score=37.32 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=46.2
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEe
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILE 79 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~ 79 (381)
++++| |+|..+..+++++.++|-.+|++|+.+.+... |. +. .-+...++-.+.+.+++.. ||+-|-
T Consensus 163 ~~~lkIvvD~~~G~~~~~~~~ll~~lG~~v~~l~~~~~----~~--~~-----~~~~~~~~~l~~l~~~v~~~~adlGia 231 (459)
T cd03088 163 LKGLRIGVYQHSSVGRDLLVRILEALGAEVVPLGRSDT----FI--PV-----DTEAVRPEDRALAAAWAAEHGLDAIVS 231 (459)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEeCCCCC----CC--CC-----CCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 35777 89999999999999999999999999874321 11 11 1111223566778888864 888664
No 86
>PLN02427 UDP-apiose/xylose synthase
Probab=67.98 E-value=48 Score=32.46 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=48.8
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhc-CCcEEEEccCCCC-Cchh----hhccCCcceEEeeCCCcchHHHHHHHHhcC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEF-GATVIRIDKHGAQ-PFVQ----DTVGYGKKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~Ladl-GA~VikvE~p~~~-~~~~----~~~nrgK~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
|++..||+=.+ .+.-|.+..+.|... |.+|+-+.+.... .... ..+..+=+.+..|+.+++ .+.++++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~---~l~~~~~~~ 87 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDS---RLEGLIKMA 87 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChH---HHHHHhhcC
Confidence 56777888776 345577777777776 6899988643211 0000 011112345677998764 477888899
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+.-
T Consensus 88 d~ViHlA 94 (386)
T PLN02427 88 DLTINLA 94 (386)
T ss_pred CEEEEcc
Confidence 9999965
No 87
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=67.83 E-value=32 Score=35.67 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|-+|.=++-+--|-..++.|..+|.+|+-+.+....... .. .|-+. . +-+.+++++||+|+...
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~--~g~~~--~--------~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERA-EQ--LGVEL--V--------DDLDELLARADFITVHT 201 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHH-Hh--cCCEE--c--------CCHHHHHhhCCEEEEcc
Confidence 377888888887667877888889999999998764211111 11 11100 0 12889999999999877
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-..--+==++.+.|....|+-+.++++
T Consensus 202 Plt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 202 PLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred CCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 6443333336789999999999998887
No 88
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=67.82 E-value=29 Score=33.60 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=77.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|==++.+--|-..++.|..||.+|+--.+...+.. -...+ -+ - .+ +.+|+++||||+-+.+
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~-~~~~~-~~--------y---~~-l~ell~~sDii~l~~P 209 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEA-EKELG-AR--------Y---VD-LDELLAESDIISLHCP 209 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHH-HhhcC-ce--------e---cc-HHHHHHhCCEEEEeCC
Confidence 5677777777666788899999999999998876542100 00000 00 0 11 8899999999999887
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHH-hhhccccc
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLG-LSGILSLL 137 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A-~sG~~~~~ 137 (381)
-..--+-=|+.+.|+...|+.+.+.++ .|+--|. +.++.| .+|-....
T Consensus 210 lt~~T~hLin~~~l~~mk~ga~lVNta----RG~~VDe---~ALi~AL~~g~i~ga 258 (324)
T COG1052 210 LTPETRHLINAEELAKMKPGAILVNTA----RGGLVDE---QALIDALKSGKIAGA 258 (324)
T ss_pred CChHHhhhcCHHHHHhCCCCeEEEECC----CccccCH---HHHHHHHHhCCcceE
Confidence 766666678999999999999999876 4554443 333343 34544333
No 89
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=67.77 E-value=15 Score=32.73 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH-hcCCEEEe
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA-NQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~-~~aDv~i~ 79 (381)
.|+|.+|+=.+-.--|-..++.|.++|++|+-++..... ..+...+ |-+ .+|. .++. .++||++-
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--g~~--~v~~---------~~l~~~~~Dv~vp 91 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--GAT--VVAP---------EEIYSVDADVFAP 91 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc--CCE--EEcc---------hhhccccCCEEEe
Confidence 478888888887767899999999999999966543110 0111111 222 2222 1233 27999995
Q ss_pred CCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhccc
Q psy1367 80 PFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILS 135 (381)
Q Consensus 80 n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~ 135 (381)
.-..+ =++.+.+.+++.++|.- |.++|+.+ +..+-++.. -|++.
T Consensus 92 ~A~~~-----~I~~~~~~~l~~~~v~~-----~AN~~~~~-~~~~~~L~~-~Gi~~ 135 (200)
T cd01075 92 CALGG-----VINDDTIPQLKAKAIAG-----AANNQLAD-PRHGQMLHE-RGILY 135 (200)
T ss_pred ccccc-----ccCHHHHHHcCCCEEEE-----CCcCccCC-HhHHHHHHH-CCCEE
Confidence 53333 36678888888777663 33577776 444444433 35543
No 90
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.74 E-value=21 Score=32.41 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cch---hhhccCCcceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFV---QDTVGYGKKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~---~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
.|+|-+||=.+. .--|-..++.|++.|++|+-+.+.... ... ....+..-..+..|+.+++..+.+.+-+ .
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 467777777652 233777888899999999999765321 111 1112222345678999987544322222 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||+|.
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 348888764
No 91
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=67.73 E-value=34 Score=33.22 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=58.8
Q ss_pred CCCCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-----hc-cCCcc-eEEeeCCCcchHHHHHHHH
Q psy1367 2 ALKGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHGA-QPFVQD-----TV-GYGKK-SLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-----~~-nrgK~-sv~ldl~~~~g~~~~~~L~ 71 (381)
.|+|+||.=++.. -....-..+|+-+|++|.-+-|++- +...+. .. ..|.+ .++=| +.+.+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~ea~ 222 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITED---------PEEAV 222 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcC---------HHHHh
Confidence 4889999887763 1222335578899999999998762 222111 11 12332 22222 66778
Q ss_pred hcCCEEEeCCCc------------cHHHHcCCCHHHHh-hhCCCcEEEEE
Q psy1367 72 NQSDVILEPFRK------------GVMEKLQLGPDVLC-KSNPRLIYARL 108 (381)
Q Consensus 72 ~~aDv~i~n~~p------------g~~~~lGl~~~~l~-~~nP~lI~~~i 108 (381)
++||||...--. .....++++-+-+. ..+|+.|+.+-
T Consensus 223 ~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 223 KGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred CCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 999999986211 12234677767666 36777777653
No 92
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=67.44 E-value=39 Score=32.38 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=60.0
Q ss_pred CCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEccCCC-CCc-hhhh-----ccCC-cceEEeeCCCcchHHHHHHHHh
Q psy1367 2 ALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDKHGA-QPF-VQDT-----VGYG-KKSLCINLKKAKGLSVMKNLAN 72 (381)
Q Consensus 2 pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~p~~-~~~-~~~~-----~nrg-K~sv~ldl~~~~g~~~~~~L~~ 72 (381)
.|+|++|.=++..-. ...-...|+-+|++|.-+-|++- +.. .... -..| |-.+.=| +.+.++
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~~a~~ 215 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHD---------PVEAVK 215 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC---------HHHHhC
Confidence 378988886665211 22335788999999999998763 221 1111 1123 2222222 567788
Q ss_pred cCCEEEeCC----C-----c---cHHHHcCCCHHHHhhhCCCcEEEEE
Q psy1367 73 QSDVILEPF----R-----K---GVMEKLQLGPDVLCKSNPRLIYARL 108 (381)
Q Consensus 73 ~aDv~i~n~----~-----p---g~~~~lGl~~~~l~~~nP~lI~~~i 108 (381)
+||||...- + + .....++++.+.+...+|+.|+.+-
T Consensus 216 ~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 216 GADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred CCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 999999752 1 1 1234578888888888888777654
No 93
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.22 E-value=24 Score=31.86 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=46.9
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEc-cCCCC-Cc---hhhhccCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRID-KHGAQ-PF---VQDTVGYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE-~p~~~-~~---~~~~~nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
+|+|-+||=.+. .--|....+.|++.|++|+-+- +.... .. -....+.+-..+..|+.+++..+.+.+=+
T Consensus 1 ~~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 1 VFSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356666666552 2337888999999999998642 22111 11 11222344456778999887644332222
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|.
T Consensus 81 ~~id~vi~~a 90 (250)
T PRK08063 81 GRLDVFVNNA 90 (250)
T ss_pred CCCCEEEECC
Confidence 2478888875
No 94
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=67.19 E-value=23 Score=32.46 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHH-HHHHH---hcC
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSV-MKNLA---NQS 74 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~---~~a 74 (381)
|.|+|-+||=.+. .--|-..++.|++.|++|+-+.+.... .......+..-..+..|+.+++..+. +.++. ...
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4567766666552 223778889999999999988654211 11111111112346789998776543 33333 356
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|-
T Consensus 81 d~li~~A 87 (262)
T TIGR03325 81 DCLIPNA 87 (262)
T ss_pred CEEEECC
Confidence 9999874
No 95
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=67.02 E-value=11 Score=40.67 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCC---cEEEEccCCCCCchh-hhccCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGA---TVIRIDKHGAQPFVQ-DTVGYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA---~VikvE~p~~~~~~~-~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
+|+..||+=++-+-||=-++++|...|. +++-+.+.|--.... ..+|..|+.++-+ .... -|.+.++.+|||
T Consensus 182 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~---~l~~~i~~~~v~ 257 (752)
T PRK07232 182 KIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDAR---TLAEAIEGADVF 257 (752)
T ss_pred ChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCC---CHHHHHcCCCEE
Confidence 5788999999999999999999999999 677787765200000 0133444444433 2222 388888899999
Q ss_pred EeCCCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 78 LEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 78 i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
|=--.||. +..|-+++.+++-|.-.+|
T Consensus 258 iG~s~~g~-----~~~~~v~~M~~~piifals 284 (752)
T PRK07232 258 LGLSAAGV-----LTPEMVKSMADNPIIFALA 284 (752)
T ss_pred EEcCCCCC-----CCHHHHHHhccCCEEEecC
Confidence 97655554 3457788777777776665
No 96
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=66.59 E-value=26 Score=34.79 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|.|-+|-=++-+--|-..++.|..+|.+|+-..|+.... ..+ ... .-+.+|+++||||+...
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~------~~~-----~~~------~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA------EGD-----GDF------VSLERILEECDVISLHT 175 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc------ccC-----ccc------cCHHHHHhhCCEEEEeC
Confidence 4778888777766668778889999999999998753211 000 011 12889999999988765
Q ss_pred CccH----HHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGV----MEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~----~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+-.. --+-=++.+.|....|+-|.++++
T Consensus 176 Plt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 176 PLTKEGEHPTRHLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred cCCCCccccccccCCHHHHhcCCCCeEEEECC
Confidence 4221 123346889999999999999887
No 97
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.14 E-value=22 Score=32.04 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCC-chhhhc-cCC--cceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQP-FVQDTV-GYG--KKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~~~-nrg--K~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
.++|-+||=.+. ..-|-..++.|++.|++||-+.+..... .....+ +.+ -..+.+|+.+++..+.+.+-+ .
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 577777776662 3458888899999999999997653211 111111 112 235788999887644333322 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 83 ~id~vi~~a 91 (250)
T PRK07774 83 GIDYLVNNA 91 (250)
T ss_pred CCCEEEECC
Confidence 568888864
No 98
>PRK12367 short chain dehydrogenase; Provisional
Probab=66.05 E-value=26 Score=32.12 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=48.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
|+|-+||-.+. .--|-...+.|++.|++||-+-+...... -...+..+..+.+|+.+++. +.+.+...|+||+|-
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~---~~~~~~~iDilVnnA 87 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS-ESNDESPNEWIKWECGKEES---LDKQLASLDVLILNH 87 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh-hhhccCCCeEEEeeCCCHHH---HHHhcCCCCEEEECC
Confidence 56767776652 22377778889999999998765321110 01112223568899988765 445667899999985
No 99
>PRK05872 short chain dehydrogenase; Provisional
Probab=65.69 E-value=22 Score=33.47 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=49.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcce--EEeeCCCcchHHHHHH-HH---hc
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKS--LCINLKKAKGLSVMKN-LA---NQ 73 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~s--v~ldl~~~~g~~~~~~-L~---~~ 73 (381)
+|+|-+||=.+ ..--|-.+++.|++.|++|+-+-+.... ......+..+.+. +.+|+.+++..+.+.+ +. ..
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46777777665 2333788899999999999988653211 1111222223333 3489999877654332 22 35
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 86 id~vI~nA 93 (296)
T PRK05872 86 IDVVVANA 93 (296)
T ss_pred CCEEEECC
Confidence 79999885
No 100
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=65.63 E-value=34 Score=32.70 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=61.8
Q ss_pred CCCCcEEEEeCCcc---cHHHHHHHHHhcCCcEEEEccCCC-CCchh-hh-ccCC-cceEEeeCCCcchHHHHHHHHhcC
Q psy1367 2 ALKGITVLEFAGLA---PAPFCGMILNEFGATVIRIDKHGA-QPFVQ-DT-VGYG-KKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 2 pL~GvrVld~~~~~---agp~~~~~LadlGA~VikvE~p~~-~~~~~-~~-~nrg-K~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
.|+|++|.=++... ....--..++-+|++|.-+-|++- .+..+ .. .+.| +-.++=| +.+-++.|
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d---------~~~a~~~a 217 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES---------LEEVIDEA 217 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC---------HHHHhCCC
Confidence 47899998888642 234446688999999999998763 22222 11 1223 2222222 66778899
Q ss_pred CEEEeCCC--------c---cHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 75 DVILEPFR--------K---GVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 75 Dv~i~n~~--------p---g~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
|||...-- + .....+.++.+-++..+|+-|+.+..+
T Consensus 218 Dvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP 264 (301)
T TIGR00670 218 DVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP 264 (301)
T ss_pred CEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence 99987421 0 122346677777777788877766444
No 101
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=65.59 E-value=25 Score=29.56 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=44.1
Q ss_pred CCCCcEEEEeCCcc-cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLA-PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~-agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++.- -|--.+.+|...||+|+.+.+.. . -+.+.+++|||||..
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----------------------~----~l~~~v~~ADIVvsA 78 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----------------------I----QLQSKVHDADVVVVG 78 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----------------------c----CHHHHHhhCCEEEEe
Confidence 46677766666322 23333455556788888887432 1 156689999999986
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEE
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYAR 107 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~ 107 (381)
-.-. . -++.+-++ |+-+.++
T Consensus 79 tg~~---~-~i~~~~ik---pGa~Vid 98 (140)
T cd05212 79 SPKP---E-KVPTEWIK---PGATVIN 98 (140)
T ss_pred cCCC---C-ccCHHHcC---CCCEEEE
Confidence 4321 1 16666655 6777663
No 102
>PF06353 DUF1062: Protein of unknown function (DUF1062); InterPro: IPR009412 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.42 E-value=7.3 Score=32.90 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=27.5
Q ss_pred HHHHHH-hCCCCHHHHHHHHhCCeeeccccccCCC
Q psy1367 348 TREVLR-HFGYSDANIEELIREDVIEETIEMNSKL 381 (381)
Q Consensus 348 t~evL~-elG~s~~~I~~L~~~gvi~~~~~~~~~~ 381 (381)
=+.+|+ +||+|.+++++|.+.|.|.....-+.||
T Consensus 105 ld~lLa~~L~lSrs~l~~l~~~G~I~~~~~~~~~L 139 (142)
T PF06353_consen 105 LDRLLARQLGLSRSRLKRLIEQGLIRSDPDKSKKL 139 (142)
T ss_pred HHHHHHHHhCcCHHHHHHHHHCCCEEecCccchhh
Confidence 367886 5999999999999999998766555543
No 103
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=65.16 E-value=41 Score=30.74 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=47.4
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
-|+|-+||=.+ ..--|...++.|++.|++|+-+........ ..+-..+.+|+.+++..+.+.+-+ ...|+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 80 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDG 80 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35666666544 223377788899999999999875432110 113345778999988765443332 34688
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 81 li~~A 85 (266)
T PRK06171 81 LVNNA 85 (266)
T ss_pred EEECC
Confidence 88873
No 104
>PRK09072 short chain dehydrogenase; Provisional
Probab=65.11 E-value=22 Score=32.58 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=50.0
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc--cCCcceEEeeCCCcchHHHHHHHH---hc
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV--GYGKKSLCINLKKAKGLSVMKNLA---NQ 73 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~--nrgK~sv~ldl~~~~g~~~~~~L~---~~ 73 (381)
|.+.|-+||=.+ ...-|-..++.|++.|++|+-+.+.... ......+ +..-..+.+|+.+++..+.+.+-+ ..
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 345666666654 2333677788889999999998764321 1111111 112235778999988766555544 35
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 81 id~lv~~a 88 (263)
T PRK09072 81 INVLINNA 88 (263)
T ss_pred CCEEEECC
Confidence 78888874
No 105
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=64.98 E-value=31 Score=35.00 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
.|.|.||.=++...-.--.+++|.|+|.+|+.+-.
T Consensus 323 ~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t 357 (456)
T TIGR01283 323 RLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGT 357 (456)
T ss_pred HcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEee
Confidence 37899997544322222356789999999999843
No 106
>PRK06523 short chain dehydrogenase; Provisional
Probab=64.98 E-value=33 Score=31.22 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
.|+|-+||=.+. .--|-..++.|++.|++|+-+-+.... ....+-..+.+|+.+++..+.+.+-+ ...|+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 80 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD-----DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDI 80 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh-----hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 467777777772 334788889999999999988654321 11122345778999988765443322 34688
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 81 vi~~a 85 (260)
T PRK06523 81 LVHVL 85 (260)
T ss_pred EEECC
Confidence 88874
No 107
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.90 E-value=35 Score=32.57 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=49.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=++ ..+-|--.+++|...|++|+-..+. .+ | +.+++++|||||..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r------------T~-----~---------l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR------------TR-----D---------LPAVCRRADILVAA 208 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC------------CC-----C---------HHHHHhcCCEEEEe
Confidence 57888888888 4555544455566779999876422 21 1 57889999999987
Q ss_pred CCc-cHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 81 FRK-GVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 81 ~~p-g~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
..- ...+. +- +.|+-|+++++-
T Consensus 209 vg~~~~v~~-----~~---lk~GavVIDvGi 231 (296)
T PRK14188 209 VGRPEMVKG-----DW---IKPGATVIDVGI 231 (296)
T ss_pred cCChhhcch-----he---ecCCCEEEEcCC
Confidence 532 22221 11 678999888753
No 108
>PRK08177 short chain dehydrogenase; Provisional
Probab=64.43 E-value=22 Score=31.78 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=43.4
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i~n~ 81 (381)
-|...++.|++.|++|+-+.+.......... ..+...+.+|+.+++..+.+.+.+. ..|+||+|-
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQA-LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcC
Confidence 4677889999999999988765322111111 1345567789999877655555443 589999885
No 109
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.00 E-value=26 Score=32.15 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=50.0
Q ss_pred CCCCcEEEEeCC---cccHHHHHHHHHhcCCcEEEEccCCC-CC---chhhhccCC-cceEEeeCCCcchHHHHHHHH--
Q psy1367 2 ALKGITVLEFAG---LAPAPFCGMILNEFGATVIRIDKHGA-QP---FVQDTVGYG-KKSLCINLKKAKGLSVMKNLA-- 71 (381)
Q Consensus 2 pL~GvrVld~~~---~~agp~~~~~LadlGA~VikvE~p~~-~~---~~~~~~nrg-K~sv~ldl~~~~g~~~~~~L~-- 71 (381)
.|+|-+||=.+. .--|-..++.|++.|++|+-+-+... .. .....++.+ -..+.+|+.+++..+.+.+-+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 467777776663 23488889999999999998743211 11 111122212 235778999998877554433
Q ss_pred --hcCCEEEeCC
Q psy1367 72 --NQSDVILEPF 81 (381)
Q Consensus 72 --~~aDv~i~n~ 81 (381)
..-|+||.|-
T Consensus 84 ~~g~ld~lv~na 95 (257)
T PRK08594 84 EVGVIHGVAHCI 95 (257)
T ss_pred hCCCccEEEECc
Confidence 3478888873
No 110
>PRK05875 short chain dehydrogenase; Provisional
Probab=63.84 E-value=24 Score=32.58 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh---cc--CCcceEEeeCCCcchHHHH-HHHH--
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT---VG--YGKKSLCINLKKAKGLSVM-KNLA-- 71 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~---~n--rgK~sv~ldl~~~~g~~~~-~~L~-- 71 (381)
++++-+||=.+. ..-|...++.|++.|++|+-+-+.... ...... .+ .+...+..|+.+++..+.+ .++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567778877762 334788888999999999988654211 011111 11 1234566899988765432 2222
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||+|.
T Consensus 84 ~~~~d~li~~a 94 (276)
T PRK05875 84 HGRLHGVVHCA 94 (276)
T ss_pred cCCCCEEEECC
Confidence 2579999875
No 111
>PRK08265 short chain dehydrogenase; Provisional
Probab=63.81 E-value=36 Score=31.22 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
|+|-+||=.+ ..--|-..++.|++.|++|+-+.+.... ......++..-..+.+|+.+++..+.+.+-+ ...|+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5666666665 2233778889999999999988653211 1111122222346778999988765433332 35799
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 84 lv~~a 88 (261)
T PRK08265 84 LVNLA 88 (261)
T ss_pred EEECC
Confidence 99985
No 112
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=63.64 E-value=54 Score=31.86 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=61.9
Q ss_pred CCCCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-----hc-cCC-cceEEeeCCCcchHHHHHHHH
Q psy1367 2 ALKGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHGA-QPFVQD-----TV-GYG-KKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-----~~-nrg-K~sv~ldl~~~~g~~~~~~L~ 71 (381)
.|+|++|.=++.. -....--.+++-+|++|.-+-|++- +...+. .. ..| +-.++=| +.+.+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~~a~ 223 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTED---------IAAGV 223 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcC---------HHHHh
Confidence 3789999877753 2234446678999999999988762 222111 11 122 2222222 66778
Q ss_pred hcCCEEEeCC-------Cc---c---HHHHcCCCHHHHhhh-CCCcEEEEEe
Q psy1367 72 NQSDVILEPF-------RK---G---VMEKLQLGPDVLCKS-NPRLIYARLS 109 (381)
Q Consensus 72 ~~aDv~i~n~-------~p---g---~~~~lGl~~~~l~~~-nP~lI~~~is 109 (381)
++||||...- .+ . ....++++.+-++.. +|+.|+.+.-
T Consensus 224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 8999999863 11 1 234578888888875 7998887644
No 113
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=63.58 E-value=18 Score=34.70 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=63.9
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC----CCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC-
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----QPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF- 81 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~~----~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~- 81 (381)
+|+=++..++|--++++...+||+|+-++---. -+..| |-| |..=.+++ ..+.+.+.+||+||-..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f-----~~r-v~~~~st~---~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF-----GGR-VHTLYSTP---SNIEEAVKKADLVIGAVL 240 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-----Cce-eEEEEcCH---HHHHHHhhhccEEEEEEE
Confidence 577788899999999999999999999985421 12222 122 33323344 45899999999988654
Q ss_pred CccHHHHcCCC-HHHHhhhCCCcEEEEEee
Q psy1367 82 RKGVMEKLQLG-PDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 82 ~pg~~~~lGl~-~~~l~~~nP~lI~~~isg 110 (381)
-||. +.--|- -+.++...|+-|.+++.-
T Consensus 241 Ipga-kaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 241 IPGA-KAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ecCC-CCceehhHHHHHhcCCCcEEEEEEE
Confidence 2332 222233 355999999999988864
No 114
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=63.41 E-value=14 Score=29.80 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEeCCC-ccHHHHcCCCH
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILEPFR-KGVMEKLQLGP 93 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~n~~-pg~~~~lGl~~ 93 (381)
|-++.+++..+|++||-+++-.. ..-....-| -...+|.++++=.+.++++... +|++|++.. +..++
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~--k~~~~~~~G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~------ 73 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEE--KLELAKELG-ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ------ 73 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHH--HHHHHHHTT-ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH------
T ss_pred HHHHHHHHHHcCCEEEEEECCHH--HHHHHHhhc-ccccccccccccccccccccccccceEEEEecCcHHHHH------
Confidence 56789999999999999996431 111112233 4566788887788889999875 999999988 55554
Q ss_pred HHHhhhCCCcEEEEEeeCC
Q psy1367 94 DVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 94 ~~l~~~nP~lI~~~isgfG 112 (381)
+.+.-+.|+=.++.+..++
T Consensus 74 ~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHEEEEEEEEEESSTS
T ss_pred HHHHHhccCCEEEEEEccC
Confidence 3455566666666666665
No 115
>PRK12742 oxidoreductase; Provisional
Probab=63.21 E-value=27 Score=31.20 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=45.5
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+||=.+ ..--|-.+++.|+..|++|+-+-.......-......+-+.+.+|+.+++....+.+-....|+||+|
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ 82 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVN 82 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEEC
Confidence 47777777665 23347788899999999998653321110000001113345678887765433222222347888887
Q ss_pred C
Q psy1367 81 F 81 (381)
Q Consensus 81 ~ 81 (381)
-
T Consensus 83 a 83 (237)
T PRK12742 83 A 83 (237)
T ss_pred C
Confidence 4
No 116
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=63.06 E-value=34 Score=32.99 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=50.8
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC-chhhhcc--CCcceEEeeCCCcchHHHHHHHHhc--CCE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP-FVQDTVG--YGKKSLCINLKKAKGLSVMKNLANQ--SDV 76 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~~~n--rgK~sv~ldl~~~~g~~~~~~L~~~--aDv 76 (381)
++|-+||=.+ ...-|....+.|.+.|.+|+-+-+..... .....++ ..-+.+..|+.+++. +.++++. .|+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~d~ 78 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAK---LRKAIAEFKPEI 78 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHH---HHHHHhhcCCCE
Confidence 4677888877 45568999999999999998775432211 1111121 223457789988654 6666765 599
Q ss_pred EEeCCC
Q psy1367 77 ILEPFR 82 (381)
Q Consensus 77 ~i~n~~ 82 (381)
||++--
T Consensus 79 vih~A~ 84 (349)
T TIGR02622 79 VFHLAA 84 (349)
T ss_pred EEECCc
Confidence 998864
No 117
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=63.06 E-value=42 Score=34.71 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHH-hcCCcEEEEccCCCCCchh--hhccCCcceEEee-CCCcchHHHHHHHH-hcCCEE
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILN-EFGATVIRIDKHGAQPFVQ--DTVGYGKKSLCIN-LKKAKGLSVMKNLA-NQSDVI 77 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~La-dlGA~VikvE~p~~~~~~~--~~~nrgK~sv~ld-l~~~~g~~~~~~L~-~~aDv~ 77 (381)
|.|-||.=++...-.-..++.|. +||.+|+-+=...+...-| ....-++..+.+| +..- +.++.+. ..+|++
T Consensus 326 L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~D~~~~---e~~~~l~~~~~Dll 402 (513)
T TIGR01861 326 LKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAIDDPNEL---EGLEAMEMLKPDII 402 (513)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEecCCCHH---HHHHHHHhcCCCEE
Confidence 78999987764333333455555 7999999986543211111 1122355556664 4433 3333332 269999
Q ss_pred EeCCCccHH-HHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHh
Q psy1367 78 LEPFRKGVM-EKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGL 130 (381)
Q Consensus 78 i~n~~pg~~-~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~ 130 (381)
|.|.+.+.+ .|+|+.. +++-++. .+||..+.|.-.++...
T Consensus 403 ig~s~~~~~A~k~gIP~------------ld~~~~~-~~p~~GY~G~~~l~~~I 443 (513)
T TIGR01861 403 LTGKRPGEVSKKMRVPY------------LNAHAYH-NGPYKGFEGWVRFARDI 443 (513)
T ss_pred EecCccchhHhhcCCCE------------EEccCCC-CCCcchHhhHHHHHHHH
Confidence 999877664 4466644 3344443 45776666554433333
No 118
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=62.97 E-value=54 Score=34.00 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=64.8
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-+|.=++-+--|-..++.|..+|.+|+-+.+..... ... ..| +... -+.+++++||+|+...+
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~-~~~--~~g---~~~~--------~l~ell~~aDiV~l~lP 203 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE-RAA--QLG---VELV--------SLDELLARADFITLHTP 203 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh-HHH--hcC---CEEE--------cHHHHHhhCCEEEEccC
Confidence 678888877776668778888999999999887642111 111 111 1110 27889999999988776
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-..--+==++.+.+....|+-+++.++
T Consensus 204 ~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 204 LTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred CChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 543333336788999999999999886
No 119
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.79 E-value=34 Score=31.39 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCCcEEEEeCC---cccHHHHHHHHHhcCCcEEEEccCCCCC---chhhhccCCcceEEeeCCCcchHHHHHH-HH---h
Q psy1367 3 LKGITVLEFAG---LAPAPFCGMILNEFGATVIRIDKHGAQP---FVQDTVGYGKKSLCINLKKAKGLSVMKN-LA---N 72 (381)
Q Consensus 3 L~GvrVld~~~---~~agp~~~~~LadlGA~VikvE~p~~~~---~~~~~~nrgK~sv~ldl~~~~g~~~~~~-L~---~ 72 (381)
|+|-+||=.+. .--|-.+++.|+..|+.|+-+....... ..-..+...-..+.+|+.+++..+.+.+ +. .
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56766666662 2347788999999999999875432111 1111122223468899999887654433 33 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||.|-
T Consensus 85 ~iD~li~nA 93 (256)
T PRK07889 85 GLDGVVHSI 93 (256)
T ss_pred CCcEEEEcc
Confidence 478999874
No 120
>PRK12862 malic enzyme; Reviewed
Probab=62.58 E-value=11 Score=40.85 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCC---cEEEEccCCCCCchh-hhccCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGA---TVIRIDKHGAQPFVQ-DTVGYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA---~VikvE~p~~~~~~~-~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
+|+..|||=++-+-||=-++++|...|. +++-|.+.|--.... ..+|.-|+.++-+. .. .-|.+.++.+|||
T Consensus 190 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~---~~l~e~~~~~~v~ 265 (763)
T PRK12862 190 DIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DA---RTLAEVIEGADVF 265 (763)
T ss_pred ChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc-cc---CCHHHHHcCCCEE
Confidence 6889999999999999999999999999 678888765100000 01233343333321 11 1388888899999
Q ss_pred EeCCCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 78 LEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 78 i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
|=--.||.+ +.|-++..+++-|.-.+|
T Consensus 266 iG~s~~g~~-----~~~~v~~M~~~piifals 292 (763)
T PRK12862 266 LGLSAAGVL-----KPEMVKKMAPRPLIFALA 292 (763)
T ss_pred EEcCCCCCC-----CHHHHHHhccCCEEEeCC
Confidence 976555543 446666666666665554
No 121
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=62.42 E-value=45 Score=33.24 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=24.6
Q ss_pred CCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 3 LKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 3 L~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~ 38 (381)
|.|.||.=++.. .+-++ +++|.|+|.+|+.+-.+.
T Consensus 285 l~gkrv~i~~~~~~~~~l-a~~l~elGm~v~~~~~~~ 320 (410)
T cd01968 285 LEGKKAALYTGGVKSWSL-VSALQDLGMEVVATGTQK 320 (410)
T ss_pred hCCCEEEEEcCCchHHHH-HHHHHHCCCEEEEEeccc
Confidence 678888755432 33344 579999999999995443
No 122
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=62.26 E-value=26 Score=32.04 Aligned_cols=79 Identities=10% Similarity=0.007 Sum_probs=48.5
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHH-HHHHH---hcCC
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSV-MKNLA---NQSD 75 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~---~~aD 75 (381)
|+|-+||=.+ .++ |-..++.|++.|++|+-+.+.... ......+...-..+..|+.+++..+. +.++. ...|
T Consensus 4 ~~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 4 LHGQVALITGGGSGI-GRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 4565665554 333 777888999999999988654211 11111222233567889999876553 33332 3579
Q ss_pred EEEeCCC
Q psy1367 76 VILEPFR 82 (381)
Q Consensus 76 v~i~n~~ 82 (381)
+||+|-.
T Consensus 83 ~li~~ag 89 (263)
T PRK06200 83 CFVGNAG 89 (263)
T ss_pred EEEECCC
Confidence 9998853
No 123
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.17 E-value=35 Score=30.73 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--CchhhhccCCcceEEeeCCCcchHHH-HHHHHh---c
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSV-MKNLAN---Q 73 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~~---~ 73 (381)
|.|++-+||=.+ ..--|-.+.+.|++.|++|+-+-..... ......++..-..+.+|+.+++..+. +.++.+ .
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGK 80 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 567777766655 2334777888899999999875432111 11111122222357789988776443 222221 2
Q ss_pred -CCEEEeCC
Q psy1367 74 -SDVILEPF 81 (381)
Q Consensus 74 -aDv~i~n~ 81 (381)
.|++|+|-
T Consensus 81 ~id~li~~a 89 (253)
T PRK08642 81 PITTVVNNA 89 (253)
T ss_pred CCeEEEECC
Confidence 78888873
No 124
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=62.04 E-value=16 Score=33.78 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc-CCcceEEeeCCCcchHH----HHHHHHhcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG-YGKKSLCINLKKAKGLS----VMKNLANQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n-rgK~sv~ldl~~~~g~~----~~~~L~~~aDv~i~n~ 81 (381)
|--+++.|++.|+.||-+-+...- ...-.-+. -...-+.+|+++.+..+ .+.+-..+.||||+|-
T Consensus 19 G~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNA 89 (246)
T COG4221 19 GEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNA 89 (246)
T ss_pred HHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecC
Confidence 788999999999999998775420 01111111 23467899999987733 3334446699999994
No 125
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=61.65 E-value=15 Score=35.73 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCcEEEEccCCC
Q psy1367 18 PFCGMILNEFGATVIRIDKHGA 39 (381)
Q Consensus 18 p~~~~~LadlGA~VikvE~p~~ 39 (381)
.+|+++=++||||+||+..|+.
T Consensus 220 a~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 220 GQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHcCCEEEecCCCC
Confidence 5799999999999999999975
No 126
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=61.06 E-value=28 Score=34.82 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
.|+|-+|+=.+. ..-|....+.|++.|++|+-+.+.... .........+-..+..|+.+++. +.+++...|++|.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~---v~~~l~~IDiLIn 251 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAA---LAELLEKVDILII 251 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHH---HHHHhCCCCEEEE
Confidence 466777775542 233677788899999999988643211 00110111122357789988754 5667788999999
Q ss_pred CCC
Q psy1367 80 PFR 82 (381)
Q Consensus 80 n~~ 82 (381)
|..
T Consensus 252 nAG 254 (406)
T PRK07424 252 NHG 254 (406)
T ss_pred CCC
Confidence 853
No 127
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=60.99 E-value=11 Score=29.47 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=29.8
Q ss_pred CCCCcCHHHHHHhCCCCHHHH----HHHHhCCeeecccccc
Q psy1367 342 PAPGVHTREVLRHFGYSDANI----EELIREDVIEETIEMN 378 (381)
Q Consensus 342 P~lGeht~evL~elG~s~~~I----~~L~~~gvi~~~~~~~ 378 (381)
-.-|-|-.+|.+.||++..+| +.|.++|.|+..|.-|
T Consensus 62 ~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 102 (102)
T PF08784_consen 62 SEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDDD 102 (102)
T ss_dssp -TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSSTT
T ss_pred CCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCCC
Confidence 335889999999999999887 6888999999988643
No 128
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=60.87 E-value=25 Score=35.41 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEe
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILE 79 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~ 79 (381)
+.++| |+|..+..+++++..+|..+|++|+-|..-..+. .+ -+ +...++-.+.+.++++. ||+-|-
T Consensus 166 ~~~lkIvvd~~~G~~~~~~~~ll~~lG~~v~~i~~~~d~~-~~--~~--------~~~~~~~l~~l~~~v~~~~adlgia 234 (441)
T cd05805 166 KSGLKVVIDYAYGVAGIVLPGLLSRLGCDVVILNARLDED-AP--RT--------DTERQRSLDRLGRIVKALGADFGVI 234 (441)
T ss_pred hcCCeEEEECCCchHHHHHHHHHHHcCCEEEEEecccCCc-cC--CC--------CccchhHHHHHHHHHHhCCCCEEEE
Confidence 35777 6899999999999999999999999876433323 11 11 11134666778887765 887664
No 129
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=60.73 E-value=35 Score=31.26 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=46.7
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
.++|-+||=.+. .--|...++.|++.|++|+-+.+.... ......+ +..-..+.+|+.+++..+.+.+-+ .
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 466655555552 223777788899999999988543211 1111112 122345788999887755443332 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||+|.
T Consensus 87 ~id~li~~a 95 (265)
T PRK07097 87 VIDILVNNA 95 (265)
T ss_pred CCCEEEECC
Confidence 368888764
No 130
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=60.73 E-value=17 Score=36.25 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCc---EEEEccCCCC-----CchhhhccCCcceEEeeCCCcchHHHHHHHHhc
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGAT---VIRIDKHGAQ-----PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~---VikvE~p~~~-----~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
+|+.+||+-++-+-||=-|..+|-.+|+. |+.|++.|-- +. ..|.-|.....+-...... ..-+..
T Consensus 196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~---~~~~~k~~~a~~~~~~~~~---~~~~~~ 269 (432)
T COG0281 196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDL---TMNQKKYAKAIEDTGERTL---DLALAG 269 (432)
T ss_pred CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCccc---ccchHHHHHHHhhhccccc---cccccC
Confidence 68889999999999999999999999994 8888887521 11 1122222211100111000 115678
Q ss_pred CCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhh-cccccCCCCC
Q psy1367 74 SDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSG-ILSLLGWRNR 142 (381)
Q Consensus 74 aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG-~~~~~g~~~~ 142 (381)
+||||-.-.+|++ ..|-+++.+++-|...++ -|--.- --+....+.-| .+-.||+++.
T Consensus 270 adv~iG~S~~G~~-----t~e~V~~Ma~~PiIfala-----NP~pEi-~Pe~a~~~~~~aaivaTGrsd~ 328 (432)
T COG0281 270 ADVLIGVSGVGAF-----TEEMVKEMAKHPIIFALA-----NPTPEI-TPEDAKEWGDGAAIVATGRSDY 328 (432)
T ss_pred CCEEEEcCCCCCc-----CHHHHHHhccCCEEeecC-----CCCccC-CHHHHhhcCCCCEEEEeCCCCC
Confidence 9999988888765 458999999998776665 343111 11223333334 4556887754
No 131
>PRK12828 short chain dehydrogenase; Provisional
Probab=60.45 E-value=48 Score=29.41 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=49.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--CchhhhccCCcceEEeeCCCcchHHHHHH-H---HhcC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSVMKN-L---ANQS 74 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~~~~-L---~~~a 74 (381)
.|+|-+||=.+ ...-|-.+.+.|+..|++|+-+.+.... ...-...+.+.+.+..|+.+++..+.+.+ . ....
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 46677777665 2334777788888999999998763221 11111123345567799998766443322 2 2357
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||++-
T Consensus 84 d~vi~~a 90 (239)
T PRK12828 84 DALVNIA 90 (239)
T ss_pred CEEEECC
Confidence 9999874
No 132
>PRK07576 short chain dehydrogenase; Provisional
Probab=60.12 E-value=31 Score=31.75 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=47.4
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cc---hhhhccCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PF---VQDTVGYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~---~~~~~nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|+|-+|+=.+- .--|-..++.|+..|++||-+.+.... .. .....+..-..+.+|+.+++..+.+.+-+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577777776652 223667778888999999998653211 00 11111122245678999877654333222
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 2468988764
No 133
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=59.65 E-value=41 Score=34.31 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCCcceEEeeCCCcchHHHHHHHHh--cCCEEE
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYGKKSLCINLKKAKGLSVMKNLAN--QSDVIL 78 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i 78 (381)
|+|.||+=++...-.-....+|.|||.+|+.+-..-.. +.+... ...++..+.+|-.+.. .+.++++ .+|++|
T Consensus 333 L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~~d~~---el~~~i~~~~pDl~i 409 (466)
T TIGR01282 333 LEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYDDVTHY---EFEEFVEKLKPDLVG 409 (466)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEeeCCCHH---HHHHHHHHhCCCEEE
Confidence 78999987763322233344789999999865432111 111111 1222334444433322 2333332 578888
Q ss_pred eCCCccH-HHHcCCCH
Q psy1367 79 EPFRKGV-MEKLQLGP 93 (381)
Q Consensus 79 ~n~~pg~-~~~lGl~~ 93 (381)
-+-+... ..|+|+..
T Consensus 410 g~~~~~~~a~k~gIP~ 425 (466)
T TIGR01282 410 SGIKEKYVFQKMGVPF 425 (466)
T ss_pred ecCCccceeeecCCCc
Confidence 7765544 33456654
No 134
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.57 E-value=37 Score=32.32 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=54.5
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCc
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~p 83 (381)
++.||.=++.+.-|-..++.|++.|-+|+-+.+... .-+.++++++||||...+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------CCHHHHHhcCCEEEEECCh
Confidence 456666667666777788999999999986665421 1155778899999999887
Q ss_pred cHHHHcCCCHHHHh--hhCCCcEEEEEe
Q psy1367 84 GVMEKLQLGPDVLC--KSNPRLIYARLS 109 (381)
Q Consensus 84 g~~~~lGl~~~~l~--~~nP~lI~~~is 109 (381)
..++.+- +.+. ...|+-|+++.|
T Consensus 58 ~~~~~v~---~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVA---EQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHH---HHHHHhcCCCCcEEEEeC
Confidence 6665532 4454 356787777765
No 135
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=59.47 E-value=74 Score=28.36 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=58.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCC--C---CC-c----------------hhhhccCCcceEEeeCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHG--A---QP-F----------------VQDTVGYGKKSLCINLK 59 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~--~---~~-~----------------~~~~~nrgK~sv~ldl~ 59 (381)
|..-||+=++-..-|..++..|+..|-. |+-+..-. . .. . ....+|..-+-.+.+-+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 5567888888888899999999999995 55555431 0 00 0 11122333332222211
Q ss_pred CcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhC-CCcEEEEEeeCCC
Q psy1367 60 KAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSN-PRLIYARLSGYGQ 113 (381)
Q Consensus 60 ~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~n-P~lI~~~isgfG~ 113 (381)
-. .+-+.++++++|+||+.+ ...-.|.-+ ++.+.+.+ +..|++ -+|++-
T Consensus 99 i~--~~~~~~~~~~~DlVi~a~-Dn~~~k~~l-~~~~~~~~~~~~ii~-~~g~~g 148 (200)
T TIGR02354 99 IT--EENIDKFFKDADIVCEAF-DNAEAKAML-VNAVLEKYKDKYLIA-ASGLAG 148 (200)
T ss_pred CC--HhHHHHHhcCCCEEEECC-CCHHHHHHH-HHHHHHHcCCCcEEE-Eecccc
Confidence 11 245677889999999984 232333323 34444443 334343 355443
No 136
>PRK06949 short chain dehydrogenase; Provisional
Probab=59.38 E-value=35 Score=30.95 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hccCCcceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQD---TVGYGKKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~nrgK~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
.++|-+|+=.+ ...-|....+.|+..|++||-+.+.... ..... ..+.+-..+..|+.+++..+.+.+-+ .
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46777777775 2344788889999999999988654211 11111 11223356888999876543332222 2
Q ss_pred cCCEEEeCCC
Q psy1367 73 QSDVILEPFR 82 (381)
Q Consensus 73 ~aDv~i~n~~ 82 (381)
..|+||+|--
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 4688888753
No 137
>PRK06128 oxidoreductase; Provisional
Probab=59.31 E-value=40 Score=31.69 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=47.0
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC---chhh---hccCCcceEEeeCCCcchHHHH-HHHH---
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP---FVQD---TVGYGKKSLCINLKKAKGLSVM-KNLA--- 71 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~---~~~~---~~nrgK~sv~ldl~~~~g~~~~-~~L~--- 71 (381)
|+|-+||=.+ ...-|-.+++.|+..|++|+-+-...... .... .....-..+.+|+.+++..+.+ .++.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 6666666665 22337788899999999998764332111 1111 1122223567899998765433 3332
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 133 g~iD~lV~nA 142 (300)
T PRK06128 133 GGLDILVNIA 142 (300)
T ss_pred CCCCEEEECC
Confidence 3579999985
No 138
>PRK06139 short chain dehydrogenase; Provisional
Probab=58.90 E-value=31 Score=33.25 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCCcc--eEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYGKK--SLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrgK~--sv~ldl~~~~g~~~~~~L~----~ 72 (381)
+|.+-+||=.+. .--|-..++.|+..|++|+-+-+.... ...... ...|.+ .+.+|+.+++..+.+.+-+ .
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 466666665552 233778889999999999988653211 111111 122333 4678999988766544433 4
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|++|+|-
T Consensus 84 ~iD~lVnnA 92 (330)
T PRK06139 84 RIDVWVNNV 92 (330)
T ss_pred CCCEEEECC
Confidence 579999885
No 139
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=58.90 E-value=25 Score=34.55 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=40.7
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHH
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNL 70 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L 70 (381)
..|+=++.+++|..++..|+..|-+|+-||.... ......-..+.|.++| ++.+.++|++|
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~-~~~~~~~~~~~r~~~l---~~~~~~~L~~l 64 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEP-KAFEPSQPMDIRVSAI---SQTSVDLLESL 64 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCc-ccCCCCCCCCccEEEe---cHHHHHHHHHC
Confidence 4688889999999999999999999999996421 1111111235666666 45555554443
No 140
>PRK07825 short chain dehydrogenase; Provisional
Probab=58.46 E-value=27 Score=32.11 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=47.4
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcC
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQS 74 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~a 74 (381)
|.|+|-+||=.+ +.--|-...+.|++.|++|+-+.+.... ......+. .-..+.+|+.+++..+.+.+-+ ...
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG-LVVGGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-cceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 346776666554 2223666777888999999887543211 01111111 2345778999988765444333 346
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|-
T Consensus 80 d~li~~a 86 (273)
T PRK07825 80 DVLVNNA 86 (273)
T ss_pred CEEEECC
Confidence 9999874
No 141
>PRK06196 oxidoreductase; Provisional
Probab=58.42 E-value=28 Score=33.01 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=48.6
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCC
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSD 75 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aD 75 (381)
.|.|-+||=.+. .--|-..++.|+..|++||-+-+.... ......+. +=..+.+|+.+++..+.+.+-+ ...|
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-GVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-hCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 356766665552 333778889999999999988654211 11111111 2346788999987765443322 3589
Q ss_pred EEEeCC
Q psy1367 76 VILEPF 81 (381)
Q Consensus 76 v~i~n~ 81 (381)
+||+|-
T Consensus 102 ~li~nA 107 (315)
T PRK06196 102 ILINNA 107 (315)
T ss_pred EEEECC
Confidence 999985
No 142
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.40 E-value=37 Score=31.26 Aligned_cols=78 Identities=9% Similarity=-0.032 Sum_probs=47.5
Q ss_pred CCCcEEEEeC---CcccHHHHHHHHHhcCCcEEEEccCCC-CC---chhhhccCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFA---GLAPAPFCGMILNEFGATVIRIDKHGA-QP---FVQDTVGYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~---~~~agp~~~~~LadlGA~VikvE~p~~-~~---~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|-+||=.+ ..--|-..++.|++.|++|+-+-.... .. .....+ ..+..+.+|+.+++..+.+.+-+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-GSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc-CCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 5566666555 122377788999999999997632211 11 111111 12345788999998876444433
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
..-|+||.|-
T Consensus 83 g~iD~lvnnA 92 (260)
T PRK06997 83 DGLDGLVHSI 92 (260)
T ss_pred CCCcEEEEcc
Confidence 3479999873
No 143
>PRK06057 short chain dehydrogenase; Provisional
Probab=58.39 E-value=38 Score=30.77 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
|+|-+||=.+. .--|-...+.|++.|++|+-+.+.... ...-... +...+..|+.+++..+.+.+-+ ...|+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV--GGLFVPTDVTDEDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc--CCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56777776663 223777788899999999988653211 0011111 1246788999987755444433 24688
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 83 vi~~a 87 (255)
T PRK06057 83 AFNNA 87 (255)
T ss_pred EEECC
Confidence 88863
No 144
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=58.23 E-value=93 Score=29.89 Aligned_cols=102 Identities=24% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCcEE-EEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhh-ccCCcceEEeeCCCcchHHHHHHHH-hcCCEEEeC
Q psy1367 4 KGITV-LEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDT-VGYGKKSLCINLKKAKGLSVMKNLA-NQSDVILEP 80 (381)
Q Consensus 4 ~GvrV-ld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~-~nrgK~sv~ldl~~~~g~~~~~~L~-~~aDv~i~n 80 (381)
+|-+| |.-+..--|..|+++=-=.|++||-+-- + +.-..+ .+-.--..++|.|+++=.+.|.+.+ +.-||..||
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG--g-~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeN 226 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG--G-AEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFEN 226 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCCeEEEecC--C-HHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEc
Confidence 34444 4444555588899988888999998742 1 112222 2334456889999997766777766 558999999
Q ss_pred CCccHHHHcCCCHHHHhhhCC--CcEEE-EEeeCCCC
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNP--RLIYA-RLSGYGQD 114 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP--~lI~~-~isgfG~~ 114 (381)
.--.++|. -+..+|+ +++.| .||.|+..
T Consensus 227 VGg~v~DA------v~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 227 VGGEVLDA------VLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred CCchHHHH------HHHhhccccceeeeeehhhcCCC
Confidence 99888874 3444444 88888 89999886
No 145
>PRK06852 aldolase; Validated
Probab=58.09 E-value=13 Score=35.53 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCcEEEEccCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~ 38 (381)
-.+|+++=++||||+||+..|+
T Consensus 190 ia~aaRiaaELGADIVKv~y~~ 211 (304)
T PRK06852 190 IAGAAGVAACLGADFVKVNYPK 211 (304)
T ss_pred HHHHHHHHHHHcCCEEEecCCC
Confidence 3578999999999999999885
No 146
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=58.01 E-value=45 Score=30.34 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=47.8
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCc---hhhhccCCcceEEeeCCCcchHHHH-HHHHh---c
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPF---VQDTVGYGKKSLCINLKKAKGLSVM-KNLAN---Q 73 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~---~~~~~nrgK~sv~ldl~~~~g~~~~-~~L~~---~ 73 (381)
.|+|-+||=.+- .--|-..++.|++.|++|+-+-+...... .....+..-..+.+|+.+++..+.+ .++.+ .
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 366766666652 22377888889999999998866521111 1111222224578899998775533 33322 4
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|++|+|-
T Consensus 92 id~li~~a 99 (258)
T PRK06935 92 IDILVNNA 99 (258)
T ss_pred CCEEEECC
Confidence 68888763
No 147
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.86 E-value=68 Score=30.35 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHHhcCCEEEeCCC-ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 66 VMKNLANQSDVILEPFR-KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 66 ~~~~L~~~aDv~i~n~~-pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
-+.+.+++|||||.... |. + +..+-+ .|+-|.+++.
T Consensus 188 ~L~~~~~~ADIvI~Avgk~~----l-v~~~~v---k~GavVIDVg 224 (279)
T PRK14178 188 NLKAELRQADILVSAAGKAG----F-ITPDMV---KPGATVIDVG 224 (279)
T ss_pred HHHHHHhhCCEEEECCCccc----c-cCHHHc---CCCcEEEEee
Confidence 38889999999998763 32 2 455554 6888888775
No 148
>PRK07890 short chain dehydrogenase; Provisional
Probab=57.72 E-value=39 Score=30.58 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
-|++-+|+=.+. ..-|-..++.|+..|++|+-+.+.... ......+ ...-..+.+|+.+++..+.+.+-+ .
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356667766652 223777788899999999988754311 1111111 112246889999887755433322 4
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 579999875
No 149
>PRK08339 short chain dehydrogenase; Provisional
Probab=57.70 E-value=39 Score=31.08 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc----cCCcceEEeeCCCcchHHHHHHHH---h
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV----GYGKKSLCINLKKAKGLSVMKNLA---N 72 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~----nrgK~sv~ldl~~~~g~~~~~~L~---~ 72 (381)
.|+|-++|=.+ ..--|-..++.|++.|++|+-+.+.... ......+ +.+-..+.+|+.+++..+.+.+-+ .
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46776666554 2233777889999999999988654211 1111111 112246788999987765443333 2
Q ss_pred cCCEEEeC
Q psy1367 73 QSDVILEP 80 (381)
Q Consensus 73 ~aDv~i~n 80 (381)
.-|+||+|
T Consensus 85 ~iD~lv~n 92 (263)
T PRK08339 85 EPDIFFFS 92 (263)
T ss_pred CCcEEEEC
Confidence 36777776
No 150
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=57.63 E-value=58 Score=31.64 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=60.5
Q ss_pred CCCCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-------hccCCcceEEeeCCCcchHHHHHHHH
Q psy1367 2 ALKGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHGA-QPFVQD-------TVGYGKKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-------~~nrgK~sv~ldl~~~~g~~~~~~L~ 71 (381)
.|+|+||.=++.. -....-..+|+-+|++|.-+-|++- +...+. ....++-.++=| +.+.+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d---------~~ea~ 222 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDD---------IDEGV 222 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcC---------HHHHh
Confidence 4789999888853 1123335678899999999998862 221111 011222222222 66778
Q ss_pred hcCCEEEeCCC-------------ccHHHHcCCCHHHHhhhC-CCcEEEEEee
Q psy1367 72 NQSDVILEPFR-------------KGVMEKLQLGPDVLCKSN-PRLIYARLSG 110 (381)
Q Consensus 72 ~~aDv~i~n~~-------------pg~~~~lGl~~~~l~~~n-P~lI~~~isg 110 (381)
++||||...-- -.....++++.+-+...+ |+.|+.+--+
T Consensus 223 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP 275 (332)
T PRK04284 223 KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLP 275 (332)
T ss_pred CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCC
Confidence 99999998621 112345777777777664 6777766443
No 151
>PRK07063 short chain dehydrogenase; Provisional
Probab=57.51 E-value=37 Score=30.93 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=47.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCc--ceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGK--KSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK--~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|-+||=.+. .--|-.+++.|++.|++|+-+.+.... ......+ +.++ ..+.+|+.+++..+.+.+-+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 55666665552 223788889999999999988653211 1111111 1233 35678999987755433322
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 3578888873
No 152
>PRK07577 short chain dehydrogenase; Provisional
Probab=57.48 E-value=73 Score=28.26 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHH-HHHHHh--cCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSV-MKNLAN--QSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~~--~aDv~i~n~ 81 (381)
-|-...+.|++.|++|+-+.+.... +..++.+..|+.+++..+. +.++.+ ..|+||+|-
T Consensus 15 iG~~ia~~l~~~G~~v~~~~r~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~a 76 (234)
T PRK07577 15 IGLALSLRLANLGHQVIGIARSAID-------DFPGELFACDLADIEQTAATLAQINEIHPVDAIVNNV 76 (234)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccc-------ccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECC
Confidence 4777789999999999998765422 1234578899999876442 333332 368888764
No 153
>PRK06500 short chain dehydrogenase; Provisional
Probab=57.15 E-value=41 Score=30.18 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=47.8
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDV 76 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv 76 (381)
+.|-+||=.+ ...-|....+.|++.|++|+-+.+.... ...-..++..-..+..|+.+++..+.+.+-+ ...|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4555555555 2333777888899999999988764211 1111112222345778999887765544443 35799
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 84 vi~~a 88 (249)
T PRK06500 84 VFINA 88 (249)
T ss_pred EEECC
Confidence 99874
No 154
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.11 E-value=29 Score=34.51 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.|.|.||.=++...-.-..+++|.++|.+|+.+-.+
T Consensus 273 ~l~Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t~ 308 (396)
T cd01979 273 LLRGKSIFFMGDNLLEIPLARFLTRCGMIVVEVGTP 308 (396)
T ss_pred hhcCCEEEEECCchHHHHHHHHHHHCCCEEEeeCCC
Confidence 378999987665443445688899999999998654
No 155
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.07 E-value=40 Score=30.57 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCc--ceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGK--KSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
++|-+||=.+ ...-|..+.+.|++.|++|+-+.+.... ......+ ..|. ..+..|+.+++..+.+.+-+ ..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5676777554 2344788899999999999988654311 1111111 1222 23678999987654433322 24
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 85 ~d~vi~~a 92 (262)
T PRK13394 85 VDILVSNA 92 (262)
T ss_pred CCEEEECC
Confidence 78888864
No 156
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=57.06 E-value=46 Score=30.41 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=48.3
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc----cCCcceEEeeCCCcchHHHHHHHH---
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV----GYGKKSLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~----nrgK~sv~ldl~~~~g~~~~~~L~--- 71 (381)
|+|-+||=.+ ..+ |-.+++.|+..|+.|+-+-+.... ......+ +..-..+.+|+.+++..+.+.+-+
T Consensus 6 l~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 6 MKGKTLVISGGTRGI-GKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5666666544 333 778888999999999887543221 1111111 222246788999988776555444
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 2479999874
No 157
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.99 E-value=35 Score=31.32 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhc-cC-C-cceEEeeCCCcchHHHHHHHH----h
Q psy1367 3 LKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGAQPFVQDTV-GY-G-KKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 3 L~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~-nr-g-K~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
|+|-+||=.+.. --|-..++.|++.||+||-+-+..........+ +. | +..+.+|+.+++..+.+.+-+ .
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 455455544431 136677899999999999774321100001111 11 2 334678999998877555444 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||.|.
T Consensus 86 ~iDilVnna 94 (260)
T PRK06603 86 SFDFLLHGM 94 (260)
T ss_pred CccEEEEcc
Confidence 479999874
No 158
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.91 E-value=34 Score=32.41 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCcEEEEeCCcc-cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLA-PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~-agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+++|-+|+=++..- +|--.+.+|...||+|+-+.+ ++ +.+.+.+++||+||..
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~----------------------~t----~~L~~~~~~aDIvI~A 209 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS----------------------RT----QNLPELVKQADIIVGA 209 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC----------------------Cc----hhHHHHhccCCEEEEc
Confidence 57899999999884 887778888899998886642 11 1266677899999988
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
- |... + ++.+. +.|+.|.+++.
T Consensus 210 t--G~~~-~-v~~~~---lk~gavViDvg 231 (283)
T PRK14192 210 V--GKPE-L-IKKDW---IKQGAVVVDAG 231 (283)
T ss_pred c--CCCC-c-CCHHH---cCCCCEEEEEE
Confidence 7 2111 2 55555 46788877765
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=56.81 E-value=29 Score=31.02 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
..|-||||+..+ .|.++-..|+...++|+-||.-
T Consensus 52 ~~~~~vLDl~~G-sG~l~l~~lsr~a~~V~~vE~~ 85 (199)
T PRK10909 52 IVDARCLDCFAG-SGALGLEALSRYAAGATLLEMD 85 (199)
T ss_pred cCCCEEEEcCCC-ccHHHHHHHHcCCCEEEEEECC
Confidence 467899999976 4666555677767899999964
No 160
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=56.76 E-value=14 Score=34.54 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ 40 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~ 40 (381)
-.+++|+=|++|||+||+-.|+.+
T Consensus 168 v~~aaRlaaelGADIiK~~ytg~~ 191 (265)
T COG1830 168 VGYAARLAAELGADIIKTKYTGDP 191 (265)
T ss_pred HHHHHHHHHHhcCCeEeecCCCCh
Confidence 468999999999999999998753
No 161
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=56.33 E-value=23 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.2
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
-|+|..+..++.+..++|..+|++||.+....
T Consensus 24 ivvD~~~G~~~~~~~~ll~~lg~~~~~~n~~~ 55 (104)
T PF02879_consen 24 IVVDCMNGAGSDILPRLLERLGCDVIELNCDP 55 (104)
T ss_dssp EEEE-TTSTTHHHHHHHHHHTTCEEEEESSS-
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcEEEEeccc
Confidence 37899999999999999999999999987643
No 162
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=56.32 E-value=42 Score=29.99 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=53.8
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeC-CCc-ch-HHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINL-KKA-KG-LSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl-~~~-~g-~~~~~~L~~~aDv~ 77 (381)
.|+|-+|+=+++ .+-|--.+.+|...||.|+-+...+ ..+| .++++ ++- +++ .. -+.+.+++++||||
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~--~~~~---~~~~~---~~hs~t~~~~~~~~l~~~~~~ADIV 130 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDING--IQVF---TRGES---IRHEKHHVTDEEAMTLDCLSQSDVV 130 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCc--cccc---ccccc---cccccccccchhhHHHHHhhhCCEE
Confidence 578888888773 3345444667777899999775432 1111 22221 111 110 11 12377899999999
Q ss_pred EeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 78 LEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 78 i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
|... +|+. -+..+-++ |+-|.+++.-
T Consensus 131 IsAvG~~~~----~i~~d~ik---~GavVIDVGi 157 (197)
T cd01079 131 ITGVPSPNY----KVPTELLK---DGAICINFAS 157 (197)
T ss_pred EEccCCCCC----ccCHHHcC---CCcEEEEcCC
Confidence 9864 2232 13455554 7888888653
No 163
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.11 E-value=39 Score=31.39 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCC-cceEEeeCCCcchHHHH-HHHH---h
Q psy1367 3 LKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYG-KKSLCINLKKAKGLSVM-KNLA---N 72 (381)
Q Consensus 3 L~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrg-K~sv~ldl~~~~g~~~~-~~L~---~ 72 (381)
|+|-+||=.+.. --|-..++.|++.||+|+-+.+.... ...-... ..| +..+.+|+.+++..+.+ .++. .
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 566666666532 23788899999999999987543210 0000000 112 34578899998876544 3333 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||+|-
T Consensus 85 ~iD~lVnnA 93 (271)
T PRK06505 85 KLDFVVHAI 93 (271)
T ss_pred CCCEEEECC
Confidence 479999874
No 164
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.96 E-value=72 Score=28.92 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=48.7
Q ss_pred CCCCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCC----------CCCc--hhh---hccCCcceEEeeCCCcc
Q psy1367 1 MALKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHG----------AQPF--VQD---TVGYGKKSLCINLKKAK 62 (381)
Q Consensus 1 ~pL~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~----------~~~~--~~~---~~nrgK~sv~ldl~~~~ 62 (381)
|+|.|-+||=.+.. --|-..++.|++.|++||-+-+.. .... ... .....-..+.+|+.+++
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 57888667766642 358889999999999999885431 0000 101 11112345778888877
Q ss_pred hHHHHHH-HH---hcCCEEEeCC
Q psy1367 63 GLSVMKN-LA---NQSDVILEPF 81 (381)
Q Consensus 63 g~~~~~~-L~---~~aDv~i~n~ 81 (381)
..+.+.+ +. ...|+||+|.
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC
Confidence 6543333 32 2468888774
No 165
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.68 E-value=30 Score=32.41 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc----CCcceEEeeCCCcchHHHHHHHHhc--
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG----YGKKSLCINLKKAKGLSVMKNLANQ-- 73 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n----rgK~sv~ldl~~~~g~~~~~~L~~~-- 73 (381)
..+-++|=.+ .+| |---++.||.-|.+||-|-+...- ......+. .-=..+.+||.+++..+.+.+-+.+
T Consensus 4 ~~~~~~lITGASsGI-G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGI-GAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 4444544433 444 667789999999999999876521 12222221 1124688999999999877754433
Q ss_pred --CCEEEeC
Q psy1367 74 --SDVILEP 80 (381)
Q Consensus 74 --aDv~i~n 80 (381)
.||||.|
T Consensus 83 ~~IdvLVNN 91 (265)
T COG0300 83 GPIDVLVNN 91 (265)
T ss_pred CcccEEEEC
Confidence 7899876
No 166
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=55.41 E-value=27 Score=31.88 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC----C---C--chhhhccCCcceEEeeCCCc--chHHHHHHHH
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----Q---P--FVQDTVGYGKKSLCINLKKA--KGLSVMKNLA 71 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~----~---~--~~~~~~nrgK~sv~ldl~~~--~g~~~~~~L~ 71 (381)
|.|.||+=.+-.--|-.+.++|.++||.|+-|-...+ + + ........++ ++. ++... -..+.+..+
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g-~l~-~~~~~~~~~~~~i~~~- 105 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHG-SVL-GFPGAERITNEELLEL- 105 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC-Ccc-cCCCceecCCccceee-
Confidence 7889998877766789999999999999996644322 1 1 1111111111 111 22110 001123333
Q ss_pred hcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHH
Q psy1367 72 NQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINY 127 (381)
Q Consensus 72 ~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~ 127 (381)
.+||||.+-.++.+ +-+...+++ |.+=.=|.++|.. +..+..+
T Consensus 106 -~~Dvlip~a~~~~i-----~~~~~~~l~-----a~~I~egAN~~~t--~~a~~~L 148 (227)
T cd01076 106 -DCDILIPAALENQI-----TADNADRIK-----AKIIVEAANGPTT--PEADEIL 148 (227)
T ss_pred -cccEEEecCccCcc-----CHHHHhhce-----eeEEEeCCCCCCC--HHHHHHH
Confidence 79999999877765 345555554 6666677788875 4444444
No 167
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=55.31 E-value=51 Score=33.69 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccC
Q psy1367 3 LKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 3 L~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p 37 (381)
|.|.||.=++.. .+-+ -+++|.++|.+|+.+=..
T Consensus 322 l~Gk~vaI~~~~~~~~~-la~~l~ElGm~v~~~~~~ 356 (475)
T PRK14478 322 LEGKRVLLYTGGVKSWS-VVKALQELGMEVVGTSVK 356 (475)
T ss_pred hCCCEEEEEcCCchHHH-HHHHHHHCCCEEEEEEEE
Confidence 678888765432 2223 456789999999998544
No 168
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=55.22 E-value=36 Score=32.86 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=49.7
Q ss_pred CCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCc--ceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 4 KGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGK--KSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 4 ~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK--~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
++.|||=.+ ...-|....+.|...|.+|+-+-+.... ...+..+..+. +.+..|+.+++ .+.++++..|+||+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEG---SFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHH---HHHHHHcCCCEEEE
Confidence 466788777 3455788888888899999976443211 11222222222 24667888764 47788888999999
Q ss_pred CCC
Q psy1367 80 PFR 82 (381)
Q Consensus 80 n~~ 82 (381)
+-.
T Consensus 86 ~A~ 88 (353)
T PLN02896 86 VAA 88 (353)
T ss_pred CCc
Confidence 864
No 169
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=54.93 E-value=55 Score=30.98 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=49.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEE-ccCCCCCchhhh--c---cCCcceEEeeCCCcchHHHHHHHHhcCC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRI-DKHGAQPFVQDT--V---GYGKKSLCINLKKAKGLSVMKNLANQSD 75 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~Vikv-E~p~~~~~~~~~--~---nrgK~sv~ldl~~~~g~~~~~~L~~~aD 75 (381)
.+|-+|+=.+ ...-|....+.|.+.|.+|+-+ .++......... . ..+-+.+..|+.+++. +.++++.+|
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~d 79 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESS---FEQAIEGCD 79 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcch---HHHHHhCCC
Confidence 4577777776 4455777788888899999844 333211111100 1 1122456779988764 778888999
Q ss_pred EEEeCCCc
Q psy1367 76 VILEPFRK 83 (381)
Q Consensus 76 v~i~n~~p 83 (381)
+||++..+
T Consensus 80 ~vih~A~~ 87 (322)
T PLN02986 80 AVFHTASP 87 (322)
T ss_pred EEEEeCCC
Confidence 99998765
No 170
>PRK09135 pteridine reductase; Provisional
Probab=54.59 E-value=62 Score=28.93 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=47.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc----cCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV----GYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~----nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
..+-+||=.+ ...-|....+.|++.|++|+-+-+.... ......+ ..+-..+..|+.+++..+.+.+-+
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4555566555 3344888889999999999998753211 1111111 123445778998877654333322
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 84 ~~~d~vi~~a 93 (249)
T PRK09135 84 GRLDALVNNA 93 (249)
T ss_pred CCCCEEEECC
Confidence 3479999874
No 171
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=54.56 E-value=84 Score=30.11 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=60.0
Q ss_pred CCCCcEEEEeCCcc---cHHHHHHHHHhcCCcEEEEccCCC-CCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 2 ALKGITVLEFAGLA---PAPFCGMILNEFGATVIRIDKHGA-QPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 2 pL~GvrVld~~~~~---agp~~~~~LadlGA~VikvE~p~~-~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
.|+|+||.=++... ..-.-..+++-+|++|+-+-|++- +.. .. +..++=| +.+-+++||||
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~-----~~~~~~d---------~~ea~~~aDvv 217 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MP-----EYGVHTD---------LDEVIEDADVV 217 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-cc-----ceEEECC---------HHHHhCCCCEE
Confidence 47899999887541 233346688999999999988762 221 11 1122222 56678999999
Q ss_pred EeCC----C------c---cHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 78 LEPF----R------K---GVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 78 i~n~----~------p---g~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
...- + + .....+.++.+-++..+|+.|+.+.-+
T Consensus 218 yt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLP 263 (305)
T PRK00856 218 MMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGP 263 (305)
T ss_pred EECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCC
Confidence 8842 1 1 123357778788877788877766443
No 172
>PRK07985 oxidoreductase; Provisional
Probab=54.39 E-value=61 Score=30.44 Aligned_cols=79 Identities=16% Similarity=-0.013 Sum_probs=46.8
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC---ch---hhhccCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP---FV---QDTVGYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~---~~---~~~~nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|-+||=.+ ..--|-..++.|++.|++||-+-+..... .. ....+.....+.+|+.+++..+.+.+-+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5566666665 22337788899999999999764432111 11 1111222335778999987655433322
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|++|+|-
T Consensus 127 g~id~lv~~A 136 (294)
T PRK07985 127 GGLDIMALVA 136 (294)
T ss_pred CCCCEEEECC
Confidence 3468888874
No 173
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.25 E-value=45 Score=30.65 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=47.6
Q ss_pred CCCcEEEEeC---CcccHHHHHHHHHhcCCcEEEEccCCC-CCchhhh--ccCCcceEEeeCCCcchHHHHH-HHH---h
Q psy1367 3 LKGITVLEFA---GLAPAPFCGMILNEFGATVIRIDKHGA-QPFVQDT--VGYGKKSLCINLKKAKGLSVMK-NLA---N 72 (381)
Q Consensus 3 L~GvrVld~~---~~~agp~~~~~LadlGA~VikvE~p~~-~~~~~~~--~nrgK~sv~ldl~~~~g~~~~~-~L~---~ 72 (381)
|+|-+||=.+ ..--|-..++.|++.|++|+-+-.... ....-.. .......+.+|+.+++..+.+. ++. .
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD 83 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5566666555 222377788999999999997643211 0111001 1112346788999998877443 333 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||+|-
T Consensus 84 ~iD~lVnnA 92 (261)
T PRK08690 84 GLDGLVHSI 92 (261)
T ss_pred CCcEEEECC
Confidence 489999884
No 174
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=54.21 E-value=65 Score=29.50 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=48.2
Q ss_pred CCCCcEEEEeCC---cccHHHHHHHHHhcCCcEEEEccCCC-C---Cchhhhcc--CCcceEEeeCCCcchHHHHHHHH-
Q psy1367 2 ALKGITVLEFAG---LAPAPFCGMILNEFGATVIRIDKHGA-Q---PFVQDTVG--YGKKSLCINLKKAKGLSVMKNLA- 71 (381)
Q Consensus 2 pL~GvrVld~~~---~~agp~~~~~LadlGA~VikvE~p~~-~---~~~~~~~n--rgK~sv~ldl~~~~g~~~~~~L~- 71 (381)
.|+|-+||=.+. .--|-..++.|++.|++|+-+-.... . ...-.... ..-..+.+|+.+++..+.+.+-+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 366767776662 22378889999999999987632211 0 00100001 11235778999998876444433
Q ss_pred ---hcCCEEEeCC
Q psy1367 72 ---NQSDVILEPF 81 (381)
Q Consensus 72 ---~~aDv~i~n~ 81 (381)
..-|+||+|-
T Consensus 83 ~~~g~iD~lv~na 95 (258)
T PRK07370 83 QKWGKLDILVHCL 95 (258)
T ss_pred HHcCCCCEEEEcc
Confidence 3579999885
No 175
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=54.17 E-value=72 Score=31.01 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCCCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-----h--ccCCcceEEeeCCCcchHHHHHHHH
Q psy1367 2 ALKGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHGA-QPFVQD-----T--VGYGKKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-----~--~nrgK~sv~ldl~~~~g~~~~~~L~ 71 (381)
.|+|++|.=++.. -..-.--..|+-+|++|.-+-|++- +...+. . .+-++-.+.=| +.+.+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d---------~~~a~ 223 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDD---------IDKAV 223 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC---------HHHHh
Confidence 4889999887763 1122235678899999998887652 222111 1 12223222222 67789
Q ss_pred hcCCEEEeCC----Cc---------cHHHHcCCCHHHHhhh-CCCcEEEEEee
Q psy1367 72 NQSDVILEPF----RK---------GVMEKLQLGPDVLCKS-NPRLIYARLSG 110 (381)
Q Consensus 72 ~~aDv~i~n~----~p---------g~~~~lGl~~~~l~~~-nP~lI~~~isg 110 (381)
++||||...- +. .....++++.+-|+.. +|+.|+.+--+
T Consensus 224 ~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP 276 (334)
T PRK01713 224 KGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP 276 (334)
T ss_pred CCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence 9999999842 11 1233467887878775 68888876544
No 176
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.98 E-value=51 Score=29.66 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc--cCCcceEEeeCCCcchHHHHH-HHH---h
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV--GYGKKSLCINLKKAKGLSVMK-NLA---N 72 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~--nrgK~sv~ldl~~~~g~~~~~-~L~---~ 72 (381)
|.|+|-+||=.+ ...-|....+.|+..|++|+-+-+.... ......+ +..=..+.+|+.+++..+.+. ++. .
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457776666555 2233777788888899999988654311 1111111 112245778999987754332 222 3
Q ss_pred cCCEEEeCCC
Q psy1367 73 QSDVILEPFR 82 (381)
Q Consensus 73 ~aDv~i~n~~ 82 (381)
..|+||+|-.
T Consensus 81 ~id~vi~~ag 90 (252)
T PRK06138 81 RLDVLVNNAG 90 (252)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 177
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=53.67 E-value=38 Score=33.85 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=28.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA 39 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~ 39 (381)
|.|.||+=++...-.-..+++|.++|.+|+.+-.+..
T Consensus 272 l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 272 LRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCCC
Confidence 7899988777544444558899999999999987654
No 178
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=53.64 E-value=51 Score=29.97 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=46.3
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhc-cCC--cceEEeeCCCcchHH-HHHHHH---hcC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTV-GYG--KKSLCINLKKAKGLS-VMKNLA---NQS 74 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~-nrg--K~sv~ldl~~~~g~~-~~~~L~---~~a 74 (381)
|+|-+||=.+ ..--|-..++.|++.|++|+-+.+.......-..+ ..+ -..+..|+.+++..+ .+.++. ...
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI 85 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 5665665555 22237788899999999999886542111111111 112 235778999977644 333332 347
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|-
T Consensus 86 d~lv~nA 92 (260)
T PRK12823 86 DVLINNV 92 (260)
T ss_pred eEEEECC
Confidence 9999874
No 179
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=53.40 E-value=68 Score=27.37 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCC--CCC--chh------hhccCCcceEEeeCCCcchHHHHHHHH
Q psy1367 4 KGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHG--AQP--FVQ------DTVGYGKKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 4 ~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~--~~~--~~~------~~~nrgK~sv~ldl~~~~g~~~~~~L~ 71 (381)
+|++|.=++.. -..-.-...|+-+|.+|.-+-|++ -+. ... ...|.+|-.++=| +.+.+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~---------~~e~l 71 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDD---------IEEAL 71 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESS---------HHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeC---------HHHhc
Confidence 47788777751 112334578899999977777765 121 111 1223444445422 67789
Q ss_pred hcCCEEEeCCCc-----------cHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 72 NQSDVILEPFRK-----------GVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 72 ~~aDv~i~n~~p-----------g~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
++||||+..--. .....+.++.+.+...+|+.|+.+--+
T Consensus 72 ~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 72 KGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp TT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred CCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence 999999876543 112338899999999899999988654
No 180
>PRK12861 malic enzyme; Reviewed
Probab=53.28 E-value=19 Score=38.88 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=51.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCC---cEEEEccCCC-----CCchhhhccCCcceEEeeCCCcchHHHHHHHHhc
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGA---TVIRIDKHGA-----QPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA---~VikvE~p~~-----~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
+|+..||+=++-+-||=-++++|.+.|+ +++-+.+.|- ++. +|.-|+-++-+. .+. -|.+.++.
T Consensus 186 ~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~----l~~~k~~~a~~~-~~~---~L~eai~~ 257 (764)
T PRK12861 186 SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTL----MDPDKERFAQET-DAR---TLAEVIGG 257 (764)
T ss_pred ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCccc----CCHHHHHHHhhc-CCC---CHHHHHhc
Confidence 6888999999999999999999999999 6888887651 110 122222222211 111 38888899
Q ss_pred CCEEEeCCCccH
Q psy1367 74 SDVILEPFRKGV 85 (381)
Q Consensus 74 aDv~i~n~~pg~ 85 (381)
+||||=--.||.
T Consensus 258 advliG~S~~g~ 269 (764)
T PRK12861 258 ADVFLGLSAGGV 269 (764)
T ss_pred CCEEEEcCCCCC
Confidence 999997555554
No 181
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.13 E-value=48 Score=29.75 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=48.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc--CCcceEEeeCCCcchHHHHHHHH----hcC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG--YGKKSLCINLKKAKGLSVMKNLA----NQS 74 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n--rgK~sv~ldl~~~~g~~~~~~L~----~~a 74 (381)
|++-+||=.+ ...-|-...+.|++.|++|+-+.+.... ......+. ..-..+.+|+.+++..+.+.+-+ ...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 5566666665 2334777788899999999998765421 11122222 23446788999987654332211 246
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|.
T Consensus 83 d~vi~~a 89 (251)
T PRK07231 83 DILVNNA 89 (251)
T ss_pred CEEEECC
Confidence 9999875
No 182
>PRK06114 short chain dehydrogenase; Provisional
Probab=53.10 E-value=66 Score=29.18 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc-cCCc--ceEEeeCCCcchHHHHHHHHh---
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV-GYGK--KSLCINLKKAKGLSVMKNLAN--- 72 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~L~~--- 72 (381)
.|+|-++|=.+ ..--|-..++.|+..|++|+-+-+.... ......+ ..+. ..+.+|+.+++..+.+.+-+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35666666554 2223778888899999999988654321 1111111 1122 246789999887554433332
Q ss_pred -cCCEEEeCC
Q psy1367 73 -QSDVILEPF 81 (381)
Q Consensus 73 -~aDv~i~n~ 81 (381)
.-|+||+|-
T Consensus 85 g~id~li~~a 94 (254)
T PRK06114 85 GALTLAVNAA 94 (254)
T ss_pred CCCCEEEECC
Confidence 359999885
No 183
>PRK08589 short chain dehydrogenase; Validated
Probab=53.04 E-value=48 Score=30.62 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCCCchhh---hccCCcceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQD---TVGYGKKSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~---~~nrgK~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
|+|-+||=.+ ..+ |-..++.|++.|++||-+.+......... ..+..-..+.+|+.+++..+.+.+-+ ..
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5565666555 333 67788889999999999876521111111 11223356789999987765433322 34
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 83 id~li~~A 90 (272)
T PRK08589 83 VDVLFNNA 90 (272)
T ss_pred cCEEEECC
Confidence 69999874
No 184
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=53.04 E-value=11 Score=36.60 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHHHh--cCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCC
Q psy1367 18 PFCGMILNE--FGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSD 75 (381)
Q Consensus 18 p~~~~~Lad--lGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aD 75 (381)
..|.+.+++ +||||+|||.|+..... .-.+.+ ..=...++-.+.|+++++.++
T Consensus 187 ~~a~r~~~~~elGaDvlKve~p~~~~~v-eg~~~~----~~~~~~~~~~~~f~~~~~a~~ 241 (340)
T PRK12858 187 IKTMEEFSKPRYGVDVLKVEVPVDMKFV-EGFDGF----EEAYTQEEAFKLFREQSDATD 241 (340)
T ss_pred HHHHHHHhhhccCCeEEEeeCCCCcccc-cccccc----cccccHHHHHHHHHHHHhhCC
Confidence 478999996 99999999999642111 001111 111223444566777777655
No 185
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.78 E-value=37 Score=28.24 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=57.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcC-CcEEEEccCCCCCchh-hhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFG-ATVIRIDKHGAQPFVQ-DTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlG-A~VikvE~p~~~~~~~-~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+++-+|+-++....|....+.|+..| .+|+-+.+.......+ ..+ +.+.+..+..+ ..++++++||||.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF--GELGIAIAYLD------LEELLAEADLIINT 88 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH--hhcccceeecc------hhhccccCCEEEeC
Confidence 56778888887777778888888997 5676665432111111 111 11112222222 23447899999999
Q ss_pred CCccHH--HHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 81 FRKGVM--EKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 81 ~~pg~~--~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
.+++.. +..-+... ...|+-++++++-.
T Consensus 89 ~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~ 118 (155)
T cd01065 89 TPVGMKPGDELPLPPS---LLKPGGVVYDVVYN 118 (155)
T ss_pred cCCCCCCCCCCCCCHH---HcCCCCEEEEcCcC
Confidence 988774 22223322 24677888888643
No 186
>PRK07041 short chain dehydrogenase; Provisional
Probab=52.74 E-value=23 Score=31.58 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc--cCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTV--GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~--nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
|-...+.|++.|++|+-+-+.... ......+ +.+-..+..|+.+++..+.+.+-+...|+||+|.
T Consensus 10 G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a 77 (230)
T PRK07041 10 GLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 77 (230)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence 566778888999999998765311 1111112 2234467889999887655554445578998875
No 187
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.66 E-value=39 Score=30.52 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=40.8
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCC--chhhhc-cCC--cceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQP--FVQDTV-GYG--KKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~--~~~~~~-nrg--K~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
-|-...+.|++.|++||-+-+...+. ..-..+ +.+ =..+..|+.+++..+.+.+-+ ...|++|+|.
T Consensus 14 iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 88 (256)
T PRK12745 14 IGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNA 88 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 37778888999999999886543211 111111 112 245678999987755444333 3578988873
No 188
>PLN02253 xanthoxin dehydrogenase
Probab=52.63 E-value=55 Score=30.19 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccC--CcceEEeeCCCcchHHHHHH-HH---hcC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGY--GKKSLCINLKKAKGLSVMKN-LA---NQS 74 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nr--gK~sv~ldl~~~~g~~~~~~-L~---~~a 74 (381)
|+|-+||=.+ ..--|...++.|++.|++|+-+-+.... ......+.. +-..+.+|+.+++..+.+.+ +. ...
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4566666555 2223777888999999999988543211 111111222 23467889999877543322 22 357
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|-
T Consensus 96 d~li~~A 102 (280)
T PLN02253 96 DIMVNNA 102 (280)
T ss_pred CEEEECC
Confidence 9999874
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=52.57 E-value=27 Score=30.31 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhc--CCcEEEEccCCCCCchhhhccCCc-------ceEEeeCCCcchHHHHHHHHhc
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEF--GATVIRIDKHGAQPFVQDTVGYGK-------KSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~Ladl--GA~VikvE~p~~~~~~~~~~nrgK-------~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
..|.+|||++.+. .++|..+|.+ +++|+-=+-+..-...-....+|. +...||=.++...+.+.. ..
T Consensus 44 ~~~~~VLELGaG~--Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~--~~ 119 (173)
T PF10294_consen 44 FRGKRVLELGAGT--GLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP--HS 119 (173)
T ss_dssp TTTSEEEETT-TT--SHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS---SS
T ss_pred cCCceEEEECCcc--chhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccc--cc
Confidence 5789999999873 3778888888 677777664431011111222222 223445444332222211 24
Q ss_pred CCEEEeC---CCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 74 SDVILEP---FRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 74 aDv~i~n---~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.|+||-+ |.+...+.|--.-..|.+.++. ||++..
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~-vl~~~~ 157 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGK-VLLAYK 157 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBTT-TT-EEEEEE
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhCCCCE-EEEEeC
Confidence 6666543 2345555544445667777777 555444
No 190
>PRK06701 short chain dehydrogenase; Provisional
Probab=52.49 E-value=67 Score=30.09 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=46.7
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC--chhhhc-cCCcc--eEEeeCCCcchHHHHHHHH----
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP--FVQDTV-GYGKK--SLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~--~~~~~~-nrgK~--sv~ldl~~~~g~~~~~~L~---- 71 (381)
.|+|-+||=.+ ...-|-..++.|++.|++|+-+-...... ..-..+ ..+++ .+.+|+.+++..+.+.+-+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35666777665 22236777888889999999885432111 111111 12333 4678999877654333222
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 123 ~~iD~lI~~A 132 (290)
T PRK06701 123 GRLDILVNNA 132 (290)
T ss_pred CCCCEEEECC
Confidence 3579999874
No 191
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=52.49 E-value=54 Score=29.69 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hccCCcceEEeeCCCcchHHHHH-HHH---
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQD---TVGYGKKSLCINLKKAKGLSVMK-NLA--- 71 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~nrgK~sv~ldl~~~~g~~~~~-~L~--- 71 (381)
.|+|-+|+=.+ ..+ |-..++.|++.|++|+-+.+.... ..... ..+..-..+.+|+.+++..+.+. ++.
T Consensus 8 ~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 8 SLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 36777777666 333 666777888999999999764311 11111 11222346778999987754333 222
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|.
T Consensus 87 ~~id~vi~~a 96 (256)
T PRK06124 87 GRLDILVNNV 96 (256)
T ss_pred CCCCEEEECC
Confidence 2358888774
No 192
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.43 E-value=55 Score=30.38 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=48.7
Q ss_pred CCCcEEEEeCC---cccHHHHHHHHHhcCCcEEEEccCCC-CC---chhhhccCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFAG---LAPAPFCGMILNEFGATVIRIDKHGA-QP---FVQDTVGYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~~---~~agp~~~~~LadlGA~VikvE~p~~-~~---~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|-+||=.+. .--|-..++.|++.|++|+-+-+... .. .....++ ....+.+|+.+++..+.+.+-+
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 45656666663 22378889999999999987743211 00 1111122 2346889999998877554443
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
..-|+||+|-
T Consensus 87 g~iD~lv~nA 96 (272)
T PRK08159 87 GKLDFVVHAI 96 (272)
T ss_pred CCCcEEEECC
Confidence 2479999874
No 193
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.32 E-value=49 Score=31.39 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++..- |--.+++|...||+|+-+- -++++ +.+++++||+||..
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~h----------------------s~t~~----l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICH----------------------SKTRD----LAAHTRQADIVVAA 208 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEec----------------------CCCCC----HHHHhhhCCEEEEc
Confidence 567777777774333 6556677777888888642 12222 67889999999987
Q ss_pred CC-ccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FR-KGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~-pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.. |+. ++.+.+ .|+-|.+++.
T Consensus 209 vG~~~~-----i~~~~i---k~gavVIDVG 230 (285)
T PRK14189 209 VGKRNV-----LTADMV---KPGATVIDVG 230 (285)
T ss_pred CCCcCc-----cCHHHc---CCCCEEEEcc
Confidence 53 332 444444 4777777754
No 194
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=52.26 E-value=40 Score=32.25 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCC-chh-hhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQP-FVQ-DTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~-~~~-~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
|.|.+|+=++.+-.|-.+.+.|...|+..|.|=...... .-+ ..++. . ..++ +.+.+.+..+||||..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~--~~~~------~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--N--AVPL------DELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--e--EEeH------HHHHHHHhcCCEEEEC
Confidence 679999999977777777888888887655543332111 111 11221 1 2222 2366778899999998
Q ss_pred CCccHHHHcCCCHHH-Hhhh-CCCcEEEEEee
Q psy1367 81 FRKGVMEKLQLGPDV-LCKS-NPRLIYARLSG 110 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~-l~~~-nP~lI~~~isg 110 (381)
-....... -.+. +... ..++++++++-
T Consensus 246 t~~~~~~~---~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 246 TGAPHYAK---IVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCCCchHH---HHHHHHhhCCCCCeEEEEeCC
Confidence 76554400 0111 2222 24678888884
No 195
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=52.22 E-value=51 Score=29.85 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHH-HH---
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKN-LA--- 71 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~-L~--- 71 (381)
.|+|-+||=.+ ..+ |-...+.|++.|++|+-+-+.... ......+ +..-..+.+|+.+++..+.+.+ +.
T Consensus 6 ~l~~k~~lItGas~gi-G~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 6 SLAGKNILITGSAQGI-GFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred cCCCCEEEEECCCChH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 46676666665 333 677788889999999987654211 1111111 1222356789999887654333 22
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 85 ~~id~vi~~a 94 (254)
T PRK08085 85 GPIDVLINNA 94 (254)
T ss_pred CCCCEEEECC
Confidence 2368888874
No 196
>PRK08227 autoinducer 2 aldolase; Validated
Probab=52.12 E-value=9.8 Score=35.65 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCcEEEEccC
Q psy1367 17 APFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p 37 (381)
-.+|+|+=++||||+||+..|
T Consensus 160 ia~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 160 FSLATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred HHHHHHHHHHHcCCEEecCCC
Confidence 358999999999999999876
No 197
>PRK08278 short chain dehydrogenase; Provisional
Probab=51.91 E-value=99 Score=28.52 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC-----ch----hhhccCCcc--eEEeeCCCcchHHHHH
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP-----FV----QDTVGYGKK--SLCINLKKAKGLSVMK 68 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~-----~~----~~~~nrgK~--sv~ldl~~~~g~~~~~ 68 (381)
|++.|-+||=.+ ..--|-..++.|+..|++|+-+-+..... .. ....+.|++ .+.+|+.+++..+.+.
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 456776666555 22337778888999999999886543210 01 011122333 4568999988765433
Q ss_pred HHH----hcCCEEEeCC
Q psy1367 69 NLA----NQSDVILEPF 81 (381)
Q Consensus 69 ~L~----~~aDv~i~n~ 81 (381)
+-+ ...|+||+|.
T Consensus 82 ~~~~~~~g~id~li~~a 98 (273)
T PRK08278 82 AKAVERFGGIDICVNNA 98 (273)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 322 3578888874
No 198
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.81 E-value=52 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=24.0
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 193 l~~~~~~ADIvI~AvG~p~~-----i~~~~vk---~GavVIDvG 228 (282)
T PRK14169 193 LKQLTKEADILVVAVGVPHF-----IGADAVK---PGAVVIDVG 228 (282)
T ss_pred HHHHHhhCCEEEEccCCcCc-----cCHHHcC---CCcEEEEee
Confidence 788999999999865 3333 4445444 677777754
No 199
>PLN02527 aspartate carbamoyltransferase
Probab=51.77 E-value=45 Score=31.97 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=59.9
Q ss_pred CCCCcEEEEeCCcc---cHHHHHHHHHhc-CCcEEEEccCCC-CCchhh-h-ccCC-cceEEeeCCCcchHHHHHHHHhc
Q psy1367 2 ALKGITVLEFAGLA---PAPFCGMILNEF-GATVIRIDKHGA-QPFVQD-T-VGYG-KKSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~~---agp~~~~~Ladl-GA~VikvE~p~~-~~~~~~-~-~nrg-K~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
.|+|+||.=++... ........|+-+ |++|.-+-|++= ++..+. . .++| +-.++=| +.+-+++
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d---------~~~a~~~ 218 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSD---------LMEVASK 218 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcC---------HHHHhCC
Confidence 47899999888642 223334455666 999999988762 222221 1 1222 2122222 5677899
Q ss_pred CCEEEeCCCc-----cH---H----HHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 74 SDVILEPFRK-----GV---M----EKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 74 aDv~i~n~~p-----g~---~----~~lGl~~~~l~~~nP~lI~~~is 109 (381)
||||....-. .. . ..+.++-+-++..+|+.|+.+.-
T Consensus 219 aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 219 CDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred CCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 9999986421 11 1 23777778888888888877543
No 200
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=51.42 E-value=84 Score=31.38 Aligned_cols=86 Identities=22% Similarity=0.328 Sum_probs=44.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHH-hcCCcEEEEccCCCCCchh-hhc-cCCcceEEeeCCCcchHHHHHHHHh-cCCEE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILN-EFGATVIRIDKHGAQPFVQ-DTV-GYGKKSLCINLKKAKGLSVMKNLAN-QSDVI 77 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~La-dlGA~VikvE~p~~~~~~~-~~~-nrgK~sv~ldl~~~~g~~~~~~L~~-~aDv~ 77 (381)
|.|.||.=++ ...+-.+ ++.|. ++|.+|+.|-........| ... +-.+..+.++ +....+....+-+ ..|++
T Consensus 286 l~Gk~vai~~~~~~~~~l-a~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~e~~~~~~~~~pdli 362 (415)
T cd01977 286 LKGKKVCIWTGGPKLWHW-TKVIEDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYID--DPNELEFFEILEMLKPDII 362 (415)
T ss_pred cCCCEEEEECCCchHHHH-HHHHHHhcCCEEEEEEEEeccHHHHHHHHHhcCCceEEEe--CCCHHHHHHHHHhcCCCEE
Confidence 6788886554 2233344 45664 9999999986532111112 111 1223344443 2223333333322 59999
Q ss_pred EeCCCccHH-HHcCC
Q psy1367 78 LEPFRKGVM-EKLQL 91 (381)
Q Consensus 78 i~n~~pg~~-~~lGl 91 (381)
|-|...+.+ .++|+
T Consensus 363 ig~s~~~~~a~~lgi 377 (415)
T cd01977 363 LTGPRVGELVKKLHV 377 (415)
T ss_pred EecCccchhhhhcCC
Confidence 988766543 33554
No 201
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=51.41 E-value=51 Score=33.43 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=45.1
Q ss_pred CCCcE-EEEeCCcccHHHHHHH---HHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCE
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMI---LNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDV 76 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~---LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv 76 (381)
+.++| |+|..+..++++...+ |..+|++|.-++--..++..|-..+ -|...++-.+.+.++++. ||+
T Consensus 168 ~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~-------p~P~~~~~l~~l~~~v~~~~adl 240 (456)
T PRK15414 168 LTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGI-------PNPLLPECRDDTRNAVIKHGADM 240 (456)
T ss_pred CCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHcCCCE
Confidence 45667 7899999999999888 9999996554433222344443221 134445566677777744 887
Q ss_pred EEe
Q psy1367 77 ILE 79 (381)
Q Consensus 77 ~i~ 79 (381)
-|-
T Consensus 241 Gia 243 (456)
T PRK15414 241 GIA 243 (456)
T ss_pred EEE
Confidence 664
No 202
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=51.35 E-value=79 Score=30.77 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=60.2
Q ss_pred CCCCcEEEEeCCc--ccHHHHHHHHHhcCCcEEEEccCCC-CCchhh-----h-ccCC-cceEEeeCCCcchHHHHHHHH
Q psy1367 2 ALKGITVLEFAGL--APAPFCGMILNEFGATVIRIDKHGA-QPFVQD-----T-VGYG-KKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~~~--~agp~~~~~LadlGA~VikvE~p~~-~~~~~~-----~-~nrg-K~sv~ldl~~~~g~~~~~~L~ 71 (381)
.|+|++|.=++.. -....--.+|+-+|++|+-+-|++- +...+. . -.+| +-.++=| +.+.+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d---------~~ea~ 223 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTED---------IAEGV 223 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcC---------HHHHh
Confidence 4889999888853 1233345678899999999998762 222111 1 1123 2222222 67778
Q ss_pred hcCCEEEeCC----Cc---------cHHHHcCCCHHHHhhh-CCCcEEEEEee
Q psy1367 72 NQSDVILEPF----RK---------GVMEKLQLGPDVLCKS-NPRLIYARLSG 110 (381)
Q Consensus 72 ~~aDv~i~n~----~p---------g~~~~lGl~~~~l~~~-nP~lI~~~isg 110 (381)
++||||...- +- .....+.++.+-+... +|+.|+.+.-+
T Consensus 224 ~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP 276 (336)
T PRK03515 224 KGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLP 276 (336)
T ss_pred CCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCC
Confidence 9999999851 10 1233467777766663 67777766544
No 203
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=51.26 E-value=85 Score=31.94 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc----CCEE
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ----SDVI 77 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~----aDv~ 77 (381)
|.|-||.=++. ...- ..+++|.++|++|+-+-.+. .+|+- .++..+.+.++++. .-++
T Consensus 312 L~GKrvai~Gdp~~~i-~LarfL~elGmevV~vgt~~----------~~~~~------~~~d~~~l~~~~~~~~~~~~vi 374 (457)
T CHL00073 312 VRGKSVFFMGDNLLEI-SLARFLIRCGMIVYEIGIPY----------MDKRY------QAAELALLEDTCRKMNVPMPRI 374 (457)
T ss_pred HCCCEEEEECCCcHHH-HHHHHHHHCCCEEEEEEeCC----------CChhh------hHHHHHHHHHHhhhcCCCCcEE
Confidence 68899984554 2333 34889999999999995442 22221 11224456666663 3356
Q ss_pred EeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCC
Q psy1367 78 LEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGP 116 (381)
Q Consensus 78 i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp 116 (381)
+++..+-.+. +.+++..|+|+.+.+ +..-|
T Consensus 375 ve~~D~~el~------~~i~~~~pDLlIgG~---~~~~P 404 (457)
T CHL00073 375 VEKPDNYNQI------QRIRELQPDLAITGM---AHANP 404 (457)
T ss_pred EeCCCHHHHH------HHHhhCCCCEEEccc---cccCc
Confidence 7776554443 446777899998764 44444
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=51.19 E-value=81 Score=28.33 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=56.6
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCC-------chhh--hccCCcceEEe-----eCCCcchHHHHHH
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQP-------FVQD--TVGYGKKSLCI-----NLKKAKGLSVMKN 69 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~-------~~~~--~~nrgK~sv~l-----dl~~~~g~~~~~~ 69 (381)
+-..+|++.++ |-.+.+.=...|.+ ++=||--.... ..|. ..-.|++.-.+ |+-++ +....
T Consensus 43 ~dvF~DlGSG~-G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~---~~~~~ 118 (205)
T PF08123_consen 43 DDVFYDLGSGV-GNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP---DFVKD 118 (205)
T ss_dssp T-EEEEES-TT-SHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH---HHHHH
T ss_pred CCEEEECCCCC-CHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc---HhHhh
Confidence 55789999987 54444444666888 99999653210 0111 11123333222 33333 34566
Q ss_pred HHhcCCEEEeC---CCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCC
Q psy1367 70 LANQSDVILEP---FRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115 (381)
Q Consensus 70 L~~~aDv~i~n---~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~G 115 (381)
++.+||||.-| |.|..+.+| .+.+.+..|+..+++.+.|....
T Consensus 119 ~~s~AdvVf~Nn~~F~~~l~~~L---~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFDPDLNLAL---AELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp HGHC-SEEEE--TTT-HHHHHHH---HHHHTTS-TT-EEEESS-SS-TT
T ss_pred hhcCCCEEEEeccccCHHHHHHH---HHHHhcCCCCCEEEECCCcCCCC
Confidence 78999987765 578888887 67888899999999998887643
No 205
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.75 E-value=57 Score=29.23 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCC--cceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYG--KKSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrg--K~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
+.+-+||=.+ ...-|-...+.|++.|++|+-+-+.... ...... .+.+ -..+.+|+.+++..+.+.+-+ ..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4565666555 3344777788889999999988654221 111111 1223 344677999887655443322 26
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||++.
T Consensus 84 ~d~vi~~a 91 (251)
T PRK12826 84 LDILVANA 91 (251)
T ss_pred CCEEEECC
Confidence 89999885
No 206
>PRK08628 short chain dehydrogenase; Provisional
Probab=50.53 E-value=80 Score=28.59 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=48.6
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhh---ccCCcceEEeeCCCcchHHH-HHHHH---hc
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDT---VGYGKKSLCINLKKAKGLSV-MKNLA---NQ 73 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~---~nrgK~sv~ldl~~~~g~~~-~~~L~---~~ 73 (381)
.|+|-+||=.+ ..--|-..++.|++.|++|+-+-++......... .+.+=..+..|+.+++..+. +.++. ..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGR 83 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 57777777665 2233778889999999999988654321111111 12222457889998876543 23332 24
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 84 id~vi~~a 91 (258)
T PRK08628 84 IDGLVNNA 91 (258)
T ss_pred CCEEEECC
Confidence 68888874
No 207
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=50.44 E-value=59 Score=29.20 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchh---hhccCCcceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQ---DTVGYGKKSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~---~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
|+|-+||=.+ ...-|-...+.|+..|++|+-+.+.... .... ...+.+-..+..|+.+++..+.+.+-+ ..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566666665 2334778888889999999988654321 1111 112333456788999877654433322 24
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|.
T Consensus 81 ~d~vi~~a 88 (250)
T TIGR03206 81 VDVLVNNA 88 (250)
T ss_pred CCEEEECC
Confidence 78888775
No 208
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=50.43 E-value=28 Score=32.69 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=57.5
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcC-CcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFG-ATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlG-A~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
.+.+-+|+=++.+-+|..+...|+.+| ++|+-+.+.... ...-..++. ...+.+++ .+.+.+..+||||.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-~~~~~~~~-------~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-LGKAELDL-------ELQEELADFDLIIN 191 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-ccceeecc-------cchhccccCCEEEE
Confidence 367889999998888999999999999 788777654211 111111111 00122211 12355678999998
Q ss_pred CCCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 80 PFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 80 n~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.-+.|.-.......-.+..+.|+-+.+++.
T Consensus 192 aTp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 192 ATSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 876554321111111223445677777774
No 209
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=50.27 E-value=59 Score=32.65 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
++.|-+|+=++.+-.|-.+.+.|...|++ |+-+.+.......+... -|-. .+++ +.+.+.+..+||||+.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~-~g~~--~~~~------~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE-FGGE--AIPL------DELPEALAEADIVISS 249 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-cCCc--EeeH------HHHHHHhccCCEEEEC
Confidence 47899999999888888889999999984 55454432101111111 1111 2222 3356777899999987
Q ss_pred CCc-cHHHHcCCCHHHHhhh-----CCCcEEEEEe
Q psy1367 81 FRK-GVMEKLQLGPDVLCKS-----NPRLIYARLS 109 (381)
Q Consensus 81 ~~p-g~~~~lGl~~~~l~~~-----nP~lI~~~is 109 (381)
-.. ..+ ++.+.++.. +..+++++++
T Consensus 250 T~s~~~~----i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 250 TGAPHPI----IGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred CCCCCcE----EcHHHHHHHHhhccCCCeEEEEeC
Confidence 532 221 344555432 3557777884
No 210
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=50.11 E-value=84 Score=35.05 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCc-hhhh-ccCCcceEEeeCCCcchHHHHHHHH-h-cCCEEE
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF-VQDT-VGYGKKSLCINLKKAKGLSVMKNLA-N-QSDVIL 78 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~-~~~~-~nrgK~sv~ldl~~~~g~~~~~~L~-~-~aDv~i 78 (381)
|+|-||+=++...-.-..+++|.|+|.+|+.+-....... +... .--++..+.++-.+.. + +.+++ + ..|++|
T Consensus 318 L~GKrv~i~~g~~~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~--e-l~~~i~~~~pDLli 394 (917)
T PRK14477 318 LEGKRVVLFTGGVKTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHIIEDTSTA--G-LLRVMREKMPDLIV 394 (917)
T ss_pred ccCCEEEEECCCchHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEEECCCHH--H-HHHHHHhcCCCEEE
Confidence 7899998776433233457788999999988654432111 1111 1112333444433332 2 33443 2 699999
Q ss_pred eCCCccHHH-HcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhh
Q psy1367 79 EPFRKGVME-KLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLS 131 (381)
Q Consensus 79 ~n~~pg~~~-~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~s 131 (381)
-|-+...+. |+|+ -++++.++ +..||..+.|.-.++..+.
T Consensus 395 g~~~~~~~a~k~gi------------P~~~~~~~-~~~p~~GY~G~~~l~~~l~ 435 (917)
T PRK14477 395 AGGKTKFLALKTRT------------PFLDINHG-RSHPYAGYEGMVTFARQLD 435 (917)
T ss_pred ecCchhhHHHHcCC------------CeEEccCC-ccCCccchhhHHHHHHHHH
Confidence 887666655 4554 33344443 3578777777655544433
No 211
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.91 E-value=61 Score=29.04 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCC--cceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYG--KKSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrg--K~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
++|-+||=.+ ..--|-..++.|++.|++|+-+.+.... ...... ...+ =+.+.+|+.+++..+.+.+-+ ..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566666554 2334677788889999999998543211 111111 1222 245678999887654333322 35
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|.
T Consensus 85 id~vi~~a 92 (250)
T PRK12939 85 LDGLVNNA 92 (250)
T ss_pred CCEEEECC
Confidence 78888874
No 212
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=49.70 E-value=31 Score=34.38 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCC-cEEEEccCCCC-CchhhhccCCcceE-EeeCCCcchHHHHHHHH---hcCCEE
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGA-TVIRIDKHGAQ-PFVQDTVGYGKKSL-CINLKKAKGLSVMKNLA---NQSDVI 77 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA-~VikvE~p~~~-~~~~~~~nrgK~sv-~ldl~~~~g~~~~~~L~---~~aDv~ 77 (381)
.|-||||++.+. |.++-..++ .|| +|+-||.-..- ...-.....|+-.. .+++-..+-.+.+.++. ...|+|
T Consensus 220 ~g~rVLDlfsgt-G~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYT-GGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCC-CHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 578999999875 555433333 466 89999965321 11111222222100 11222233455566664 268999
Q ss_pred EeCCCc---c--HHHHcCCCHHH-----HhhhCC--CcEEEEEeeCCCCCCCCCCCchH-HHHHH--hhh----cccccC
Q psy1367 78 LEPFRK---G--VMEKLQLGPDV-----LCKSNP--RLIYARLSGYGQDGPYSSMAGHD-INYLG--LSG----ILSLLG 138 (381)
Q Consensus 78 i~n~~p---g--~~~~lGl~~~~-----l~~~nP--~lI~~~isgfG~~Gp~~~~~~~d-~~~~A--~sG----~~~~~g 138 (381)
|.|-+. . .+...--+|++ ++-++| -|++||.|++=+. ..|- .+..| .+| ++...|
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~------~~f~~~v~~aa~~~~~~~~~l~~~~ 371 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS------DLFQKIIADAAIDAGRDVQFIEQFR 371 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH------HHHHHHHHHHHHHcCCeEEEEEEcC
Confidence 998442 1 11111013433 345566 4666776655331 1222 23222 223 455567
Q ss_pred CCCCCCCCCCCccchH
Q psy1367 139 WRNRNPTPPCNLAADF 154 (381)
Q Consensus 139 ~~~~~P~~~~~~~~d~ 154 (381)
.+.+.|..+..+-+.|
T Consensus 372 ~~~DhP~~~~~pe~~Y 387 (396)
T PRK15128 372 QAADHPVIATYPEGLY 387 (396)
T ss_pred CCCCCCCCCCCCCcCC
Confidence 7778887766655555
No 213
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=49.68 E-value=52 Score=29.93 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCc--ceEEeeCCCcchHHHHH-HHH---hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGK--KSLCINLKKAKGLSVMK-NLA---NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~-~L~---~~ 73 (381)
|+|-+||=.+ ...-|...++.|++.|++||-+.+.... ......+ ..++ ..+.+|+.+++..+.+. ++. ..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4455555554 2233677788888999999988764311 1111111 1223 35788999887653322 222 34
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 90 id~vi~~a 97 (259)
T PRK08213 90 VDILVNNA 97 (259)
T ss_pred CCEEEECC
Confidence 68888873
No 214
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=49.52 E-value=84 Score=31.94 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCc-ccHHHHHHHHH-hcCCcEEEEcc
Q psy1367 3 LKGITVLEFAGL-APAPFCGMILN-EFGATVIRIDK 36 (381)
Q Consensus 3 L~GvrVld~~~~-~agp~~~~~La-dlGA~VikvE~ 36 (381)
|.|.||.=++.. .+-. .++.|. ++|.+|+.+-.
T Consensus 323 L~GkrvaI~~~~~~~~~-l~~~l~~ElGmevv~~~~ 357 (457)
T TIGR01284 323 LRGKKVWVWSGGPKLWH-WPRPLEDELGMEVVAVST 357 (457)
T ss_pred cCCCEEEEECCCcHHHH-HHHHHHHhCCCEEEEEEE
Confidence 789998765432 2223 345565 89999999843
No 215
>PRK07564 phosphoglucomutase; Validated
Probab=49.45 E-value=57 Score=33.93 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=45.7
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh---cCCEEEe
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN---QSDVILE 79 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~---~aDv~i~ 79 (381)
.++| |+|..+..+++++..+|-.+|++|+-+.....+...|.... .+-. ..-.|+..+.+.++++ .||+-|-
T Consensus 225 ~~lkIvvD~~~G~~~~~~~~ll~~lG~~v~~l~~~~d~~f~~~~~~-~~~~---~~p~P~~~~~L~~l~~~~~~adlGia 300 (543)
T PRK07564 225 AGLRLGVDPLGGATGPYWKAIAERYGLDLTVVNAPVDPTFNFMPLD-DDGK---IRMDCSSPYAMAGLLALKDAFDLAFA 300 (543)
T ss_pred CCceEEEecCCCCcHHHHHHHHHHcCCcEEEeCCcCCCCCCCCCCC-ccCC---cCCCCChHHHHHHHHhhccCCCEEEE
Confidence 4666 68999999999999999999999998875443333332210 0000 1223344455677765 5887664
No 216
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.44 E-value=68 Score=29.01 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=46.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchh---hhccCCcceEEeeCCCcchHHHH-HHHHh---c
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQ---DTVGYGKKSLCINLKKAKGLSVM-KNLAN---Q 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~---~~~nrgK~sv~ldl~~~~g~~~~-~~L~~---~ 73 (381)
+.|-+||=.+ ..--|...++.|++.|++|+-+-+.... .... ...+..-..+..|+.+++..+.+ .++.+ .
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 5565666554 2233788899999999999988654321 1111 11122234567899998765533 33322 4
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 84 id~li~~a 91 (254)
T PRK07478 84 LDIAFNNA 91 (254)
T ss_pred CCEEEECC
Confidence 68888874
No 217
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=49.36 E-value=56 Score=27.87 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCcc
Q psy1367 13 GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKG 84 (381)
Q Consensus 13 ~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg 84 (381)
++..|-...+.|...|.+|+-+-+... .... +.+-+.+..|+.++ +.+.+.++.+|+||....+.
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~--~~~~--~~~~~~~~~d~~d~---~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPS--KAED--SPGVEIIQGDLFDP---DSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGG--GHHH--CTTEEEEESCTTCH---HHHHHHHTTSSEEEECCHST
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCch--hccc--ccccccceeeehhh---hhhhhhhhhcchhhhhhhhh
Confidence 355678888999999999999876532 2222 77788899999887 55888888999999998653
No 218
>PRK05693 short chain dehydrogenase; Provisional
Probab=49.01 E-value=43 Score=30.87 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPFR 82 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~~ 82 (381)
-|....+.|+..|++|+-+-+... ..-...+.+-..+.+|+.+++..+.+.+-+ ...|+||+|-.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAE--DVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 477788889999999998754321 111111223356788999987654433322 35799988753
No 219
>PRK06198 short chain dehydrogenase; Provisional
Probab=48.87 E-value=64 Score=29.21 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=46.6
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCc-EEEEccCCCC-Cchhhh-ccCCcc--eEEeeCCCcchHHHHHHHH----h
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGAT-VIRIDKHGAQ-PFVQDT-VGYGKK--SLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~-VikvE~p~~~-~~~~~~-~nrgK~--sv~ldl~~~~g~~~~~~L~----~ 72 (381)
+++-+|+=.+ ..--|-...+.|+..|++ |+-+.+.... ...... .+.+.+ .+..|+.+++..+.+.+-+ .
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5565666554 222367778889999999 8877654321 111111 123333 4778999987654433333 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 84 ~id~li~~a 92 (260)
T PRK06198 84 RLDALVNAA 92 (260)
T ss_pred CCCEEEECC
Confidence 579999874
No 220
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=48.87 E-value=1e+02 Score=31.12 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=60.6
Q ss_pred CCCCcEEEEeCCc---ccHHHHHHHHHhc-CCcEEEEccCCC-CCchh-hhc-cCCcceEEeeCCCcchHHHHHHHHhcC
Q psy1367 2 ALKGITVLEFAGL---APAPFCGMILNEF-GATVIRIDKHGA-QPFVQ-DTV-GYGKKSLCINLKKAKGLSVMKNLANQS 74 (381)
Q Consensus 2 pL~GvrVld~~~~---~agp~~~~~Ladl-GA~VikvE~p~~-~~~~~-~~~-nrgK~sv~ldl~~~~g~~~~~~L~~~a 74 (381)
.|+|++|.=++.. -.......+|+-+ |++|+-+-|++- ++..+ ... ..|. ++.+ .+ -+.+-+++|
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~-~v~~--~~-----d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGH-VIEQ--TD-----DLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCC-eEEE--Ec-----CHHHHhCCC
Confidence 4889999988864 2223334455666 999999998863 22222 111 1121 2332 11 166778999
Q ss_pred CEEEeCC------Ccc----HHHHcCCCHHHHhh-hCCCcEEEEEee
Q psy1367 75 DVILEPF------RKG----VMEKLQLGPDVLCK-SNPRLIYARLSG 110 (381)
Q Consensus 75 Dv~i~n~------~pg----~~~~lGl~~~~l~~-~nP~lI~~~isg 110 (381)
|||.... ... ....+.++.+-++. .+|+.|+.+.-+
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLP 356 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLP 356 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCC
Confidence 9999733 111 12347788888877 788888775443
No 221
>PRK07814 short chain dehydrogenase; Provisional
Probab=48.81 E-value=66 Score=29.40 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCc--ceEEeeCCCcchHHHHHH-HH---h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGK--KSLCINLKKAKGLSVMKN-LA---N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~-L~---~ 72 (381)
+++|-+||=.+. ..-|-..++.|++.|++||-+-+.... ......+ ..++ ..+.+|+.+++..+.+.+ +. .
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356666666662 223677788889999999988654211 1111111 1122 345689999877543322 22 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 579999874
No 222
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=48.69 E-value=98 Score=27.77 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVI 77 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~ 77 (381)
|++-+||=.+ ...-|....+.|++.|++|+-+.+.. .......=..+..|+.+++..+.+.+-+ ...|+|
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL 80 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4555565554 22337788888999999999997542 1111122235778999887655433222 236888
Q ss_pred EeCC
Q psy1367 78 LEPF 81 (381)
Q Consensus 78 i~n~ 81 (381)
|+|-
T Consensus 81 i~~a 84 (252)
T PRK08220 81 VNAA 84 (252)
T ss_pred EECC
Confidence 8764
No 223
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=48.44 E-value=42 Score=34.72 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=44.3
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
.++| |+|..+..+++++.++|..+|++|+-+..-..+...|...+- +....-|...++-.+.+.++...||+.|-
T Consensus 209 ~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~l~~~~d~~f~~~~p~~-~~~~~~~p~~~~~l~~l~~~~~~adlGia 284 (522)
T cd05801 209 SGLRLGVDPLGGASVPYWQPIAEKYGLNLTVVNPKVDPTFRFMTLDH-DGKIRMDCSSPYAMAGLLKLKDKFDLAFA 284 (522)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHcCCCEEEEcCeeCCCCCCCCCCc-ccCCCCCCCCHHHHHHHHHhhcCCCEEEE
Confidence 4667 689999999999999999999999988654322222222110 00111122223444444444456887664
No 224
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=48.28 E-value=1.1e+02 Score=29.44 Aligned_cols=77 Identities=16% Similarity=-0.012 Sum_probs=51.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cc---hhhhcc----CCcceEEeeCCCcchHHHHHHHHh
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PF---VQDTVG----YGKKSLCINLKKAKGLSVMKNLAN 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~---~~~~~n----rgK~sv~ldl~~~~g~~~~~~L~~ 72 (381)
|++.+|+=.+ .+.-|.+..+.|...|.+|+-+.+.... .. .+...+ ..=+.+..|+++. +.+.++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~---~~l~~~~~ 89 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF---TDCQKACK 89 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH---HHHHHHhh
Confidence 5667777777 4666888888898899999988753211 00 000000 1123577899874 45788889
Q ss_pred cCCEEEeCCC
Q psy1367 73 QSDVILEPFR 82 (381)
Q Consensus 73 ~aDv~i~n~~ 82 (381)
.+|+||+.-.
T Consensus 90 ~~d~ViHlAa 99 (348)
T PRK15181 90 NVDYVLHQAA 99 (348)
T ss_pred CCCEEEECcc
Confidence 9999999764
No 225
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.06 E-value=63 Score=30.71 Aligned_cols=35 Identities=14% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... +|+. ++.+-+ .|+-|.+++.
T Consensus 192 l~~~~~~ADIvIsAvGkp~~-----i~~~~v---k~GavVIDVG 227 (287)
T PRK14173 192 LPAVTRRADVLVVAVGRPHL-----ITPEMV---RPGAVVVDVG 227 (287)
T ss_pred HHHHHhhCCEEEEecCCcCc-----cCHHHc---CCCCEEEEcc
Confidence 778899999999865 3332 244544 4677777653
No 226
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.05 E-value=73 Score=28.40 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=47.0
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEE-ccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHH-HHHHh-
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRI-DKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVM-KNLAN- 72 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~Vikv-E~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~-~~L~~- 72 (381)
|.|.+-+||=.+. .--|-..++.|++.|++|+-+ .+.... ......+ +..-..+.+|+.+++..+.+ .++.+
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4566666666652 223555667788999999988 553211 1111111 12234567899998875433 33333
Q ss_pred --cCCEEEeCCC
Q psy1367 73 --QSDVILEPFR 82 (381)
Q Consensus 73 --~aDv~i~n~~ 82 (381)
..|+||+|--
T Consensus 81 ~~~id~vi~~ag 92 (247)
T PRK05565 81 FGKIDILVNNAG 92 (247)
T ss_pred hCCCCEEEECCC
Confidence 6899988743
No 227
>PRK06483 dihydromonapterin reductase; Provisional
Probab=47.98 E-value=53 Score=29.35 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
-|-..++.|++.|++|+-+.+.... ........|-..+..|+.+++..+.+.+-+ ...|+||+|-
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 82 (236)
T PRK06483 14 IGLALAWHLLAQGQPVIVSYRTHYP-AIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNA 82 (236)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCchh-HHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECC
Confidence 4778888999999999988654321 111111123467889999987765443333 2478888874
No 228
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=47.76 E-value=13 Score=35.68 Aligned_cols=43 Identities=7% Similarity=0.215 Sum_probs=26.4
Q ss_pred eCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEE
Q psy1367 57 NLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYA 106 (381)
Q Consensus 57 dl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~ 106 (381)
|++|+| ..+|+.+|||||+|-+=.-...+ ...|-+-+-+.+.+
T Consensus 123 DFrS~E----~i~Ll~eADIVVTNPPFSLFrEy---v~~Li~~~KkFlII 165 (336)
T PF13651_consen 123 DFRSDE----CIELLKEADIVVTNPPFSLFREY---VAQLIEYDKKFLII 165 (336)
T ss_pred CcCcHH----HHHHHhcCCEEEeCCCcHHHHHH---HHHHHHhCCCEEEE
Confidence 666665 56688899999999544433321 23455555555554
No 229
>PRK08303 short chain dehydrogenase; Provisional
Probab=47.70 E-value=1.1e+02 Score=29.11 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCC--------CCc---hhhhc---cCCcceEEeeCCCcchHHH
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGA--------QPF---VQDTV---GYGKKSLCINLKKAKGLSV 66 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~--------~~~---~~~~~---nrgK~sv~ldl~~~~g~~~ 66 (381)
.|+|-+||-.+. .--|-.+++.|+..|++|+-+-+-.. ... .-..+ +.....+.+|+.+++..+.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 367777776663 22378889999999999998754211 011 11111 1122457789999888765
Q ss_pred HHHHH----hcCCEEEeCC
Q psy1367 67 MKNLA----NQSDVILEPF 81 (381)
Q Consensus 67 ~~~L~----~~aDv~i~n~ 81 (381)
+.+-+ ..-|+||.|-
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 54433 2478999873
No 230
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.51 E-value=85 Score=29.67 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCCC--chhhhc-cCCcc--eEEeeCCCcchHHHHHHHH---
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQP--FVQDTV-GYGKK--SLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~~--~~~~~~-nrgK~--sv~ldl~~~~g~~~~~~L~--- 71 (381)
.|+|-+||=.+ .++ |...++.|++.||+|+-+....... ..-..+ ..|.+ .+.+|+.+++..+.+.+-+
T Consensus 9 ~l~~k~~lVTGas~gI-G~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 9 DLSGKVAVVTGAAAGL-GRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCCCEEEEECCCChH-HHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 36777777554 333 6777888999999999876432111 111111 22333 4667999887765544433
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 88 g~iD~li~nA 97 (306)
T PRK07792 88 GGLDIVVNNA 97 (306)
T ss_pred CCCCEEEECC
Confidence 4689999984
No 231
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=46.96 E-value=76 Score=29.85 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred CcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhh---c---cCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 5 GITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDT---V---GYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 5 GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~---~---nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
|-+|+=.+ ...-|....+.|.+.|.+|+-+-+.......... + +.+-+.+..|+.+++. +.++++.+|+|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGS---FDSVVDGCEGV 80 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcch---HHHHHcCCCEE
Confidence 45666666 3455888888899999999865433211111111 1 1233567789988764 67778899999
Q ss_pred EeCCCc
Q psy1367 78 LEPFRK 83 (381)
Q Consensus 78 i~n~~p 83 (381)
|++-.+
T Consensus 81 ih~A~~ 86 (322)
T PLN02662 81 FHTASP 86 (322)
T ss_pred EEeCCc
Confidence 998654
No 232
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=46.89 E-value=58 Score=33.00 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=43.0
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEE
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVIL 78 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i 78 (381)
.++| |+|..+..++++...+|..||++|+.+.... +..|-..+.+ .. ++-.+.+.++++ .||+-|
T Consensus 172 ~~~kivvd~~~G~~~~~~~~il~~lg~~v~~~~~~~--dg~F~~~~p~-------p~-~~~l~~l~~~v~~~~ad~Gi 239 (461)
T cd05800 172 AGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAER--DPLFGGIPPE-------PI-EKNLGELAEAVKEGGADLGL 239 (461)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHcCCCEEEeeCCc--CCCCCCCCCC-------CC-HHHHHHHHHHHHhcCCCEEE
Confidence 3555 7889999999999999999999999887543 3333221111 22 344455666664 378755
No 233
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=46.74 E-value=53 Score=30.90 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHhcC--CcEEEEccCCCCCchhhhccCC-cceEEeeCCCcchHHHHHHHHhcCCEEEeCCCc
Q psy1367 14 LAPAPFCGMILNEFG--ATVIRIDKHGAQPFVQDTVGYG-KKSLCINLKKAKGLSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 14 ~~agp~~~~~LadlG--A~VikvE~p~~~~~~~~~~nrg-K~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~p 83 (381)
+.-|-+..+.|.+.| .+|.-+.....+.........+ +..+..|+.+++. +.+.++.+|+|++.-.+
T Consensus 7 GflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~---l~~a~~g~d~V~H~Aa~ 76 (280)
T PF01073_consen 7 GFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPES---LEEALEGVDVVFHTAAP 76 (280)
T ss_pred cHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHH---HHHHhcCCceEEEeCcc
Confidence 344777888889999 6665544433222211222223 3378899999754 88889999999998544
No 234
>PLN02240 UDP-glucose 4-epimerase
Probab=46.58 E-value=97 Score=29.59 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=51.1
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCc--h---hh---hccCCcceEEeeCCCcchHHHHHHHH
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPF--V---QD---TVGYGKKSLCINLKKAKGLSVMKNLA 71 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~--~---~~---~~nrgK~sv~ldl~~~~g~~~~~~L~ 71 (381)
|-|.+-+|+=.+ +..-|....+.|.+.|.+|+-+.+...... . -. ....+-+.+..|+++++. +.+++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---l~~~~ 77 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEA---LEKVF 77 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHH---HHHHH
Confidence 467888888776 345588888899999999998864321110 0 00 011233567889988865 44444
Q ss_pred h--cCCEEEeCCC
Q psy1367 72 N--QSDVILEPFR 82 (381)
Q Consensus 72 ~--~aDv~i~n~~ 82 (381)
+ ..|+||++-.
T Consensus 78 ~~~~~d~vih~a~ 90 (352)
T PLN02240 78 ASTRFDAVIHFAG 90 (352)
T ss_pred HhCCCCEEEEccc
Confidence 4 6899999753
No 235
>PRK06182 short chain dehydrogenase; Validated
Probab=46.48 E-value=90 Score=28.62 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=45.6
Q ss_pred CcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHH-HH---hcCCEEEe
Q psy1367 5 GITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKN-LA---NQSDVILE 79 (381)
Q Consensus 5 GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~-L~---~~aDv~i~ 79 (381)
+-+|+=.+ ..--|-..++.|+..|++|+-+.+... ..-.....+-+.+.+|+.+++..+.+.+ +. ...|+||+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~--~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD--KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 33444433 223377778888999999998765321 1111112345678899999877554332 22 25788888
Q ss_pred CCC
Q psy1367 80 PFR 82 (381)
Q Consensus 80 n~~ 82 (381)
|..
T Consensus 81 ~ag 83 (273)
T PRK06182 81 NAG 83 (273)
T ss_pred CCC
Confidence 753
No 236
>PRK07062 short chain dehydrogenase; Provisional
Probab=46.31 E-value=83 Score=28.64 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh---ccCC--cceEEeeCCCcchHHHHHHHH---
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT---VGYG--KKSLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~---~nrg--K~sv~ldl~~~~g~~~~~~L~--- 71 (381)
.|+|-+||=.+. .--|-..++.|++.|++||-+-+.... ...... ...+ -..+.+|+.+++..+.+.+-+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 366666666552 223778889999999999987553211 111111 1112 235778999987765443333
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 3478999874
No 237
>KOG1205|consensus
Probab=46.16 E-value=65 Score=30.51 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-C----chhhhccCC-cceEEeeCCCcchHHHHH----HHH
Q psy1367 4 KGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-P----FVQDTVGYG-KKSLCINLKKAKGLSVMK----NLA 71 (381)
Q Consensus 4 ~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~----~~~~~~nrg-K~sv~ldl~~~~g~~~~~----~L~ 71 (381)
.|-.||=-+ .+| |-.++..|+..||.+++|=..... . ..-...... =.-+-+|+.+++..+.+- +-.
T Consensus 11 ~~kvVvITGASsGI-G~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGI-GEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 344444433 333 889999999999988887654321 1 111122222 234668999988877553 566
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...||||+|-
T Consensus 90 g~vDvLVNNA 99 (282)
T KOG1205|consen 90 GRVDVLVNNA 99 (282)
T ss_pred CCCCEEEecC
Confidence 7899999984
No 238
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.14 E-value=56 Score=29.13 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=49.6
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc-CCc-ceEEeeCCCcchHHHHHHHH----h
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG-YGK-KSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n-rgK-~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
|.|+|-+|+=.+. .--|-.+.+.|+..|++|+-+-+.... .......+ .++ ..+..|+.+++..+.+.+-+ .
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4577778877762 223777889999999999998764321 11111111 122 45678999887655433322 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|++|.+.
T Consensus 81 ~id~ii~~a 89 (238)
T PRK05786 81 AIDGLVVTV 89 (238)
T ss_pred CCCEEEEcC
Confidence 358888765
No 239
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=46.14 E-value=86 Score=26.99 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=41.8
Q ss_pred CCCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++. +-|--.+.+|...||.|+-.-.- ++ .+.+.+++|||||..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~----------------------T~----~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK----------------------TK----NLQEITRRADIVVSA 86 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT----------------------SS----SHHHHHTTSSEEEE-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC----------------------CC----cccceeeeccEEeee
Confidence 5778888777744 34544466666678888776432 11 177889999999976
Q ss_pred C-CccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 81 F-RKGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 81 ~-~pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
. +|+. +..+ -+.|+-|.+++.-
T Consensus 87 ~G~~~~-----i~~~---~ik~gavVIDvG~ 109 (160)
T PF02882_consen 87 VGKPNL-----IKAD---WIKPGAVVIDVGI 109 (160)
T ss_dssp SSSTT------B-GG---GS-TTEEEEE--C
T ss_pred eccccc-----cccc---cccCCcEEEecCC
Confidence 5 2332 2223 3467888877654
No 240
>PRK12937 short chain dehydrogenase; Provisional
Probab=46.07 E-value=2.1e+02 Score=25.32 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred CCCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC--C-c--hhhhccCCcceEEeeCCCcchHHHHHH-H---
Q psy1367 1 MALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ--P-F--VQDTVGYGKKSLCINLKKAKGLSVMKN-L--- 70 (381)
Q Consensus 1 ~pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~--~-~--~~~~~nrgK~sv~ldl~~~~g~~~~~~-L--- 70 (381)
|.++|-+|+=.+. ..-|-..++.|++.|++|+-+-..... . . .....+..=..+.+|+.+++..+.+.+ +
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4677777777652 334778889999999999877543211 0 0 011112222356789998776543322 2
Q ss_pred HhcCCEEEeCCC
Q psy1367 71 ANQSDVILEPFR 82 (381)
Q Consensus 71 ~~~aDv~i~n~~ 82 (381)
....|+||+|--
T Consensus 81 ~~~id~vi~~ag 92 (245)
T PRK12937 81 FGRIDVLVNNAG 92 (245)
T ss_pred cCCCCEEEECCC
Confidence 236899999853
No 241
>PLN00198 anthocyanidin reductase; Provisional
Probab=46.06 E-value=72 Score=30.46 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC-ch--hhhc-cCCc-ceEEeeCCCcchHHHHHHHHhcCC
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP-FV--QDTV-GYGK-KSLCINLKKAKGLSVMKNLANQSD 75 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~-~~--~~~~-nrgK-~sv~ldl~~~~g~~~~~~L~~~aD 75 (381)
|.++-+|+=.+ .+.-|....+.|.+.|++|+-+-...... .. ...+ +.++ +.+..|+.+++ .+.++++++|
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~d 82 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEE---SFEAPIAGCD 82 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChH---HHHHHHhcCC
Confidence 56777777776 44457777888888999997543322111 00 0111 1122 35677998865 4667778899
Q ss_pred EEEeCCCc
Q psy1367 76 VILEPFRK 83 (381)
Q Consensus 76 v~i~n~~p 83 (381)
+||++--+
T Consensus 83 ~vih~A~~ 90 (338)
T PLN00198 83 LVFHVATP 90 (338)
T ss_pred EEEEeCCC
Confidence 99998754
No 242
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.69 E-value=72 Score=30.27 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... +|+. +..+-++ |+-|.+++.
T Consensus 194 l~~~~~~ADIvI~AvG~~~~-----i~~~~vk---~GavVIDvG 229 (284)
T PRK14170 194 LPQVAKEADILVVATGLAKF-----VKKDYIK---PGAIVIDVG 229 (284)
T ss_pred HHHHHhhCCEEEEecCCcCc-----cCHHHcC---CCCEEEEcc
Confidence 788899999999864 3332 3445444 677777754
No 243
>PRK09186 flagellin modification protein A; Provisional
Probab=45.68 E-value=91 Score=28.09 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc--c-CCcc--eEEeeCCCcchHHHHHHHHh---
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV--G-YGKK--SLCINLKKAKGLSVMKNLAN--- 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~--n-rgK~--sv~ldl~~~~g~~~~~~L~~--- 72 (381)
|+|-+|+=.+ ..--|-..++.|++.|++|+-+-+.... ......+ + .++. .+..|+.+++..+.+.+-+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 4566666655 2234777889999999999988543211 0111111 1 1222 34779999876543322222
Q ss_pred -cCCEEEeCC
Q psy1367 73 -QSDVILEPF 81 (381)
Q Consensus 73 -~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 279999984
No 244
>PRK05876 short chain dehydrogenase; Provisional
Probab=45.53 E-value=66 Score=29.85 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCC--cceEEeeCCCcchHHHHHHHH----h
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYG--KKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrg--K~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
|+|-+||=.+ .++ |-..++.|+..|++|+-+...... ......+ ..| -..+.+|+.+++..+.+.+-+ .
T Consensus 4 ~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4565566443 333 777888999999999977543211 1111111 122 234678999987755443333 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 83 ~id~li~nA 91 (275)
T PRK05876 83 HVDVVFSNA 91 (275)
T ss_pred CCCEEEECC
Confidence 469999985
No 245
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=45.45 E-value=28 Score=33.66 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.1
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
|+.|.+|||++.+ .|.+ +..|+..|++|+=||.-
T Consensus 129 ~~~g~~ILDIGCG-~G~~-s~~La~~g~~V~GID~s 162 (322)
T PLN02396 129 PFEGLKFIDIGCG-GGLL-SEPLARMGATVTGVDAV 162 (322)
T ss_pred CCCCCEEEEeeCC-CCHH-HHHHHHcCCEEEEEeCC
Confidence 5789999999987 3554 66889999999999965
No 246
>PRK06194 hypothetical protein; Provisional
Probab=45.44 E-value=74 Score=29.40 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=46.3
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCCcc--eEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYGKK--SLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrgK~--sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
++|-+||=.+ ..--|...++.|++.|++|+-+.+.... ...... ...|.+ .+..|+.+++..+.+.+-+ ..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5566666554 2223777888899999999988653211 111111 111322 3778999887654333222 13
Q ss_pred CCEEEeCCC
Q psy1367 74 SDVILEPFR 82 (381)
Q Consensus 74 aDv~i~n~~ 82 (381)
.|+||+|--
T Consensus 84 id~vi~~Ag 92 (287)
T PRK06194 84 VHLLFNNAG 92 (287)
T ss_pred CCEEEECCC
Confidence 699999853
No 247
>PRK06484 short chain dehydrogenase; Validated
Probab=45.43 E-value=41 Score=34.35 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
|-..++.|++.|++|+-+-+.... ...-..++.+-..+.+|+.+++..+.+.+-+ ...|+||+|-
T Consensus 18 G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~li~na 87 (520)
T PRK06484 18 GRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVLVNNA 87 (520)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 677888999999999998654321 1111112223345889999988765444333 3589999995
No 248
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.33 E-value=52 Score=30.02 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=47.7
Q ss_pred CCCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEcc----CCC-----CC---chhhhc---cCCcceEEeeCCCcch
Q psy1367 2 ALKGITVLEFAGL---APAPFCGMILNEFGATVIRIDK----HGA-----QP---FVQDTV---GYGKKSLCINLKKAKG 63 (381)
Q Consensus 2 pL~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~----p~~-----~~---~~~~~~---nrgK~sv~ldl~~~~g 63 (381)
.|+|-+||=.+.. --|-..++.|++.|++||-+.. +.. .. ..-..+ +..-..+.+|+.+++.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 4788888888753 2478888999999999998631 110 00 000111 1112346789998877
Q ss_pred HHHHHHHHh----cCCEEEeCC
Q psy1367 64 LSVMKNLAN----QSDVILEPF 81 (381)
Q Consensus 64 ~~~~~~L~~----~aDv~i~n~ 81 (381)
.+.+.+-+. .-|+||.|.
T Consensus 83 i~~~~~~~~~~~g~id~li~~a 104 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNA 104 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECC
Confidence 654443332 258888874
No 249
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=45.11 E-value=76 Score=28.71 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=46.1
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCc--ceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGK--KSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
.|+|-+||=.+. .--|..+++.|++.|++|+-+.+.... ......+ ..|. ..+..|+.+++..+.+.+-+ .
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367777777652 333778888899999999977554211 1111111 1122 24566999887655433322 2
Q ss_pred cCCEEEeC
Q psy1367 73 QSDVILEP 80 (381)
Q Consensus 73 ~aDv~i~n 80 (381)
..|+||+|
T Consensus 87 ~~d~li~~ 94 (255)
T PRK07523 87 PIDILVNN 94 (255)
T ss_pred CCCEEEEC
Confidence 36788776
No 250
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.92 E-value=80 Score=29.92 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=41.9
Q ss_pred CCCCcEEEEeCCc-ccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGL-APAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~-~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++. +-|--.+.+|...||.|+-.-+ ++++ +.+++++|||||..
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs----------------------~T~~----l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI----------------------FTKD----LKAHTKKADIVIVG 207 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC----------------------CCcC----HHHHHhhCCEEEEe
Confidence 4666676666644 4443334444456777753321 1211 56889999999986
Q ss_pred C-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 F-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
. +|+. +..+-++ |+-|.+++.
T Consensus 208 vGkp~~-----i~~~~vk---~gavvIDvG 229 (281)
T PRK14183 208 VGKPNL-----ITEDMVK---EGAIVIDIG 229 (281)
T ss_pred cCcccc-----cCHHHcC---CCcEEEEee
Confidence 4 3332 3334444 677776654
No 251
>PRK08226 short chain dehydrogenase; Provisional
Probab=44.87 E-value=75 Score=28.87 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=45.3
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchh-hhccCCc--ceEEeeCCCcchHHHHHHHH----hcC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQ-DTVGYGK--KSLCINLKKAKGLSVMKNLA----NQS 74 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~-~~~nrgK--~sv~ldl~~~~g~~~~~~L~----~~a 74 (381)
|++-+||=.+ ...-|....+.|+..|++|+-+.+........ ...+.+. ..+..|+.+++..+.+.+-+ ..-
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 83 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI 83 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5566666554 22236777888889999999997653211111 1111222 35778999987755433322 245
Q ss_pred CEEEeC
Q psy1367 75 DVILEP 80 (381)
Q Consensus 75 Dv~i~n 80 (381)
|+||+|
T Consensus 84 d~vi~~ 89 (263)
T PRK08226 84 DILVNN 89 (263)
T ss_pred CEEEEC
Confidence 777776
No 252
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.87 E-value=73 Score=30.38 Aligned_cols=34 Identities=6% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEE
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARL 108 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~i 108 (381)
+.+++++|||||... +|+. ++.+-++ |+-|.+++
T Consensus 197 l~~~~~~ADIvVsAvGkp~~-----i~~~~ik---~gaiVIDV 231 (294)
T PRK14187 197 LADYCSKADILVAAVGIPNF-----VKYSWIK---KGAIVIDV 231 (294)
T ss_pred HHHHHhhCCEEEEccCCcCc-----cCHHHcC---CCCEEEEe
Confidence 778899999999865 3332 4455555 67777775
No 253
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=44.87 E-value=52 Score=32.04 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=39.9
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHH
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNL 70 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L 70 (381)
..|+=++.+++|-.++..|+..|.+|+-||+...+.. ......-|.+.+ ++.+.++|+++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~~~~~~r~~~l---~~~~~~~l~~~ 65 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP--ADDAWDSRVYAI---SPSSQAFLERL 65 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccc--cCCCCCCceEee---cHHHHHHHHHc
Confidence 3578889999999999999999999999997643211 111122344555 34455555543
No 254
>PRK07109 short chain dehydrogenase; Provisional
Probab=44.80 E-value=75 Score=30.56 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=48.7
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hccCCcceEEeeCCCcchHHHHHHHH----h
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQD---TVGYGKKSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~nrgK~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
++++-+||=.+ ..--|-.+++.|+..|++|+-+-+.... ..... ..+..-..+..|+.+++..+.+.+-+ .
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 46666666554 2333778889999999999987654211 11111 11112235678999988766544433 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|++|+|-
T Consensus 85 ~iD~lInnA 93 (334)
T PRK07109 85 PIDTWVNNA 93 (334)
T ss_pred CCCEEEECC
Confidence 579999885
No 255
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=44.73 E-value=25 Score=33.24 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=28.0
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
+.|+=++.+++|..++..|+..|-+|+-||+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 368888999999999999999999999999854
No 256
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=44.69 E-value=1e+02 Score=30.48 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=50.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC----ch--hhhccCCcceEEeeCCCcchHHHHHHHHh---
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP----FV--QDTVGYGKKSLCINLKKAKGLSVMKNLAN--- 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~----~~--~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--- 72 (381)
-+|.+|+=++ +..-|-...+.|.+.|.+|+-+-+..... .. ......+-+.+..|+.+++. +.++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~~~ 134 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADS---LRKVLFSEG 134 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHH---HHHHHHHhC
Confidence 3567777776 34447778888889999999887653210 00 11112355678899999865 555555
Q ss_pred -cCCEEEeCCC
Q psy1367 73 -QSDVILEPFR 82 (381)
Q Consensus 73 -~aDv~i~n~~ 82 (381)
.+|+||++.-
T Consensus 135 ~~~D~Vi~~aa 145 (390)
T PLN02657 135 DPVDVVVSCLA 145 (390)
T ss_pred CCCcEEEECCc
Confidence 5999998764
No 257
>PRK08324 short chain dehydrogenase; Validated
Probab=44.54 E-value=60 Score=34.76 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccC--CcceEEeeCCCcchHHHH-HHHH---hc
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGY--GKKSLCINLKKAKGLSVM-KNLA---NQ 73 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nr--gK~sv~ldl~~~~g~~~~-~~L~---~~ 73 (381)
++.|-+||=.+ ..--|-.+.+.|++.|++|+-+.+.... ......++. +-..+.+|+.+++..+.+ .+.. ..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46777777776 3444778889999999999998764321 111111211 234577899988765433 2332 25
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 499 iDvvI~~A 506 (681)
T PRK08324 499 VDIVVSNA 506 (681)
T ss_pred CCEEEECC
Confidence 78998874
No 258
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=44.53 E-value=74 Score=29.28 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=46.9
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCC--cceEEeeCCCcchHHHHHH-HH---hc
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYG--KKSLCINLKKAKGLSVMKN-LA---NQ 73 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrg--K~sv~ldl~~~~g~~~~~~-L~---~~ 73 (381)
|+|-+||=.+. .--|-..++.|++.|++|+-+.+.... ......+ +.+ -..+..|+.+++..+.+.+ +. ..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55666665542 233677788899999999988754211 1111111 112 2356789999876554333 22 35
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 88 id~li~~a 95 (278)
T PRK08277 88 CDILINGA 95 (278)
T ss_pred CCEEEECC
Confidence 79999874
No 259
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=44.52 E-value=36 Score=30.82 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=61.8
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC----C--C--chhhhccCCcceEEe-eCCCcchHHHHHHHHh
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA----Q--P--FVQDTVGYGKKSLCI-NLKKAKGLSVMKNLAN 72 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~----~--~--~~~~~~nrgK~sv~l-dl~~~~g~~~~~~L~~ 72 (381)
.|+|.||+=.+-+-.|-+++++|.++|+.|+-|-...+ + + ......... .++.. +..+.-..+.+..+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~-- 96 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVAL-GGSARVKVQDYFPGEAILGL-- 96 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhh-CCccccCcccccCcccceec--
Confidence 47899999999888899999999999998888765443 1 1 111111111 11211 00000011223333
Q ss_pred cCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCC
Q psy1367 73 QSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSS 119 (381)
Q Consensus 73 ~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~ 119 (381)
.+||+|.+-..+.+ +.+...+++ |.+-.=|.++|...
T Consensus 97 ~~DVlipaA~~~~i-----~~~~a~~l~-----a~~V~e~AN~p~t~ 133 (217)
T cd05211 97 DVDIFAPCALGNVI-----DLENAKKLK-----AKVVAEGANNPTTD 133 (217)
T ss_pred cccEEeeccccCcc-----ChhhHhhcC-----ccEEEeCCCCCCCH
Confidence 79999988666643 446666655 44445566777665
No 260
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.45 E-value=75 Score=30.19 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=47.7
Q ss_pred CCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchh---hhccCC--cceEEeeCCCcchHHHHHHHH---
Q psy1367 3 LKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQ---DTVGYG--KKSLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 3 L~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~---~~~nrg--K~sv~ldl~~~~g~~~~~~L~--- 71 (381)
|+|-+||=.+ .+| |-..++.|+..|++||-+-+.... ...- ...+.+ =..+.+|+.+.+..+.+.+-+
T Consensus 12 l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5666666554 333 778889999999999988553211 0010 111112 235788999987766544433
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 3479999884
No 261
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=44.16 E-value=94 Score=30.62 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=54.6
Q ss_pred cEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCcc
Q psy1367 6 ITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKG 84 (381)
Q Consensus 6 vrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg 84 (381)
.+|.=++ .+.-|-..++.|...|-+|+-+.+.. . +...+++++||+||.+.++.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~-------------------~------~~~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD-------------------W------DRAEDILADAGMVIVSVPIH 153 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc-------------------c------hhHHHHHhcCCEEEEeCcHH
Confidence 4566665 56667778888999998888887521 0 12356788999999999988
Q ss_pred HHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 85 VMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 85 ~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
..... .+.+....|+-|+++++
T Consensus 154 ~~~~~---~~~l~~l~~~~iv~Dv~ 175 (374)
T PRK11199 154 LTEEV---IARLPPLPEDCILVDLT 175 (374)
T ss_pred HHHHH---HHHHhCCCCCcEEEECC
Confidence 76542 14455578899999885
No 262
>PRK07806 short chain dehydrogenase; Provisional
Probab=44.05 E-value=1.2e+02 Score=27.22 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc-cCC--cceEEeeCCCcchHHHHHH-HH---h
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV-GYG--KKSLCINLKKAKGLSVMKN-LA---N 72 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~-nrg--K~sv~ldl~~~~g~~~~~~-L~---~ 72 (381)
++|-+|+=.+. ..-|-...+.|+..|++|+-+-+.... ...-..+ +.+ -..+..|+.+++..+.+.+ +. .
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777777762 334777788888999999876432111 0000111 112 2457789999887654333 22 3
Q ss_pred cCCEEEeCCC
Q psy1367 73 QSDVILEPFR 82 (381)
Q Consensus 73 ~aDv~i~n~~ 82 (381)
..|+||+|.-
T Consensus 84 ~~d~vi~~ag 93 (248)
T PRK07806 84 GLDALVLNAS 93 (248)
T ss_pred CCcEEEECCC
Confidence 5799998853
No 263
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=44.00 E-value=1.3e+02 Score=26.87 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=38.7
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcC--CcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH--hcCCEEEe
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFG--ATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA--NQSDVILE 79 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlG--A~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~--~~aDv~i~ 79 (381)
.|-+|||++.+ .|.++-.++...| ..|+-||.-.- .-..|-+.+..|+.+++-.+.+.+-. ..+|+|+.
T Consensus 51 ~~~~VLDlG~G-tG~~t~~l~~~~~~~~~V~aVDi~~~------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 51 PGMTVVDLGAA-PGGWSQYAVTQIGDKGRVIACDILPM------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCEEEEEccc-CCHHHHHHHHHcCCCceEEEEecccc------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 46789999975 4555444444444 47888886420 01123445666766654333332222 34666665
Q ss_pred CCC
Q psy1367 80 PFR 82 (381)
Q Consensus 80 n~~ 82 (381)
|+-
T Consensus 124 ~~~ 126 (209)
T PRK11188 124 DMA 126 (209)
T ss_pred CCC
Confidence 543
No 264
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=43.99 E-value=26 Score=34.61 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=28.5
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|+=++-..||..|+..||+.|.+|+-+|.-.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence 46778888999999999999999999999743
No 265
>PRK12827 short chain dehydrogenase; Provisional
Probab=43.95 E-value=1.3e+02 Score=26.84 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCC--CC---chhh-hccCCc--ceEEeeCCCcchHHHHH-HHH-
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGA--QP---FVQD-TVGYGK--KSLCINLKKAKGLSVMK-NLA- 71 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~--~~---~~~~-~~nrgK--~sv~ldl~~~~g~~~~~-~L~- 71 (381)
|.+.+|+=.+ ...-|...++.|++.|++|+-+-+... .. .... ....++ ..+..|+.+++..+.+. ++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4565666544 222377788889999999988764321 11 0111 111222 35778999987755433 332
Q ss_pred --hcCCEEEeCC
Q psy1367 72 --NQSDVILEPF 81 (381)
Q Consensus 72 --~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 84 ~~~~~d~vi~~a 95 (249)
T PRK12827 84 EFGRLDILVNNA 95 (249)
T ss_pred HhCCCCEEEECC
Confidence 3478998875
No 266
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=43.84 E-value=32 Score=34.79 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.1
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.-||=+++++++..++..|+.-|-.|..+|+-.
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~ 37 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP 37 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCC
Confidence 458889999999999999999999999999865
No 267
>PRK06720 hypothetical protein; Provisional
Probab=43.84 E-value=1.2e+02 Score=26.19 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCC-chhhhc-cCC-c-ceEEeeCCCcchHH-HHHHHH---hc
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQP-FVQDTV-GYG-K-KSLCINLKKAKGLS-VMKNLA---NQ 73 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~~~-nrg-K-~sv~ldl~~~~g~~-~~~~L~---~~ 73 (381)
|+|-+++-.+. .-.|....+.|++.|++|+-+.+..... ..-..+ ..+ + ..+.+|+++++..+ .+.+.+ ..
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45555555442 2246677888899999999886432110 000111 112 2 24678998876643 333333 34
Q ss_pred CCEEEeC
Q psy1367 74 SDVILEP 80 (381)
Q Consensus 74 aDv~i~n 80 (381)
-|++|+|
T Consensus 94 iDilVnn 100 (169)
T PRK06720 94 IDMLFQN 100 (169)
T ss_pred CCEEEEC
Confidence 7888876
No 268
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=43.68 E-value=56 Score=32.06 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=55.2
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCc-ceEEeeCCCcchHHHHHHHHh-----------
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGK-KSLCINLKKAKGLSVMKNLAN----------- 72 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK-~sv~ldl~~~~g~~~~~~L~~----------- 72 (381)
-+|||+..+. |-++- .||...++|+=||.-... ...-.....|+ ..+.. ...+-.+.+.++..
T Consensus 208 ~~vLDl~~G~-G~~sl-~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~--~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGN-GNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQI--IRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccc-cHHHH-HHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEE--EECCHHHHHHHHhhccccccccccc
Confidence 5799999874 66654 888888899999965321 00111111121 12222 12222333444432
Q ss_pred ----cCCEEEeCCCccHHHHcCCCHHHHhhh--CCCcEEEEEee
Q psy1367 73 ----QSDVILEPFRKGVMEKLQLGPDVLCKS--NPRLIYARLSG 110 (381)
Q Consensus 73 ----~aDv~i~n~~pg~~~~lGl~~~~l~~~--nP~lI~~~isg 110 (381)
..|+||-+- | |-|++.+.+..+ ..++||+|...
T Consensus 284 ~~~~~~D~v~lDP-P----R~G~~~~~l~~l~~~~~ivyvSC~p 322 (362)
T PRK05031 284 LKSYNFSTIFVDP-P----RAGLDDETLKLVQAYERILYISCNP 322 (362)
T ss_pred ccCCCCCEEEECC-C----CCCCcHHHHHHHHccCCEEEEEeCH
Confidence 359888763 3 258887776655 46899999875
No 269
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.66 E-value=1.8e+02 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcC-CEEEeCCC
Q psy1367 14 LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQS-DVILEPFR 82 (381)
Q Consensus 14 ~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~a-Dv~i~n~~ 82 (381)
+.-|-...+.|.+.|-+|+.+.+.......-. .+.+-+..|+... +.+.+++... |+||+.--
T Consensus 10 GfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~d~~~~---~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 10 GFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---SGVEFVVLDLTDR---DLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred ccHHHHHHHHHHhCCCeEEEEeCCCccccccc---cccceeeecccch---HHHHHHHhcCCCEEEEccc
Confidence 44466666677777999999987542211111 5677788887776 6678888888 99998753
No 270
>PRK09242 tropinone reductase; Provisional
Probab=43.63 E-value=2.1e+02 Score=25.81 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hc--cCCcceEEeeCCCcchHHHHHHHH----
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQD---TV--GYGKKSLCINLKKAKGLSVMKNLA---- 71 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~--nrgK~sv~ldl~~~~g~~~~~~L~---- 71 (381)
|+|-+|+=.+. .--|....+.|++.|++|+-+-+.... ..... .. +..-..+.+|+.+++..+.+.+-+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56766666652 233788888999999999988654311 01111 11 112234678999987755444333
Q ss_pred hcCCEEEeCCC
Q psy1367 72 NQSDVILEPFR 82 (381)
Q Consensus 72 ~~aDv~i~n~~ 82 (381)
...|+||+|--
T Consensus 87 g~id~li~~ag 97 (257)
T PRK09242 87 DGLHILVNNAG 97 (257)
T ss_pred CCCCEEEECCC
Confidence 35799999864
No 271
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=43.56 E-value=1.1e+02 Score=27.81 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=45.7
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC--chhhhc-cCCcc--eEEeeCCCcchHHHHH-HHH---
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP--FVQDTV-GYGKK--SLCINLKKAKGLSVMK-NLA--- 71 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~--~~~~~~-nrgK~--sv~ldl~~~~g~~~~~-~L~--- 71 (381)
.|+|-+||=.+ ..--|...++.|++.|+.|+-+-+...+. ..-..+ ..+.+ .+.+|+.+++..+.+. ++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46676776665 22237888999999999998764422110 011111 12332 4678999887644332 222
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|.
T Consensus 84 g~id~lv~~a 93 (261)
T PRK08936 84 GTLDVMINNA 93 (261)
T ss_pred CCCCEEEECC
Confidence 2368888764
No 272
>KOG1252|consensus
Probab=43.47 E-value=43 Score=32.46 Aligned_cols=86 Identities=14% Similarity=0.225 Sum_probs=58.1
Q ss_pred HHHHhcCCcEEEEccCCC---C---------------Cc--hhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 22 MILNEFGATVIRIDKHGA---Q---------------PF--VQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 22 ~~LadlGA~VikvE~p~~---~---------------~~--~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.+|..|||+||++.+..+ + .. .-++.|-|.-.+- -.--|.|+++++-..-|+||..-
T Consensus 144 ~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~h---y~ttg~EI~~q~~g~vDi~V~ga 220 (362)
T KOG1252|consen 144 ILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAH---YETTGPEIWRQLDGKVDIFVAGA 220 (362)
T ss_pred HHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccc---cccccHHHHHHhcCCCCEEEecc
Confidence 579999999999987543 1 11 1233344433211 12347899999999999999976
Q ss_pred Cc-cHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 82 RK-GVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 82 ~p-g~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
-. |++-. + -.-|++.||+.-.|-+-.+++
T Consensus 221 GTGGTitg--v-GRylke~~~~~kVv~vdp~~S 250 (362)
T KOG1252|consen 221 GTGGTITG--V-GRYLKEQNPNIKVVGVDPQES 250 (362)
T ss_pred CCCceeec--h-hHHHHHhCCCCEEEEeCCCcc
Confidence 44 33332 2 256899999998888777765
No 273
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.44 E-value=1.2e+02 Score=26.82 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=45.5
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc-cCCc--ceEEeeCCCcchHHHHHH-HH--
Q psy1367 1 MALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV-GYGK--KSLCINLKKAKGLSVMKN-LA-- 71 (381)
Q Consensus 1 ~pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~-L~-- 71 (381)
|.+++-+||=.+ ..--|-...+.|+..|++|+-+-..... ......+ ..++ ..+..|+.+++....+.+ +.
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456666666555 2233666777788889999776543211 1111111 1233 345569999877544332 22
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||++.
T Consensus 81 ~~~id~vi~~a 91 (248)
T PRK05557 81 FGGVDILVNNA 91 (248)
T ss_pred cCCCCEEEECC
Confidence 3578888875
No 274
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=43.40 E-value=18 Score=32.70 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC--Cchh-hhccCCcceEEeeCCCcchHHHH-HHHH----hcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ--PFVQ-DTVGYGKKSLCINLKKAKGLSVM-KNLA----NQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~--~~~~-~~~nrgK~sv~ldl~~~~g~~~~-~~L~----~~aDv~i~n~ 81 (381)
|-..++.|+..||+||-+.+.... ...- .....+.+.+.+|+.+++..+.+ .++. ..-|+||+|.
T Consensus 9 G~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 9 GRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNA 81 (241)
T ss_dssp HHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 677899999999999999876431 0111 11123344699999998876644 3333 3358888763
No 275
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=43.02 E-value=1.5e+02 Score=29.33 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=23.4
Q ss_pred CCCcEEEEe-CCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 3 LKGITVLEF-AGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 3 L~GvrVld~-~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
|.|.||.=. ....+..++ ++|.++|.+|+.+-.+
T Consensus 284 l~gkrv~I~~~~~~~~~~~-~~l~elG~~v~~~~~~ 318 (406)
T cd01967 284 LKGKKVIIYTGGARSWHVI-AALRELGMEVVAAGYE 318 (406)
T ss_pred ccCCEEEEEccCcchHHHH-HHHHHcCCEEEEEEEe
Confidence 578887644 334444455 9999999999877543
No 276
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.80 E-value=39 Score=28.20 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc---CCE
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ---SDV 76 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~---aDv 76 (381)
-|+|-||+=++ ..++||..-..+-.-|||||-.- ...|.....| ++||.+. ..+++|... .++
T Consensus 2 ~l~gkKviiiGdRDGiPgpAie~c~~~~gaevvfs~-----TeCFVctaag----aMDLEnQ---~rvk~~aEk~g~enl 69 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSS-----TECFVCTAAG----AMDLENQ---QRVKDLAEKYGAENL 69 (150)
T ss_pred ccCCcEEEEEecCCCCCcHHHHHHHHhcCceEEEEe-----eeEEEecccc----cccHHHH---HHHHHHHHhcCCccE
Confidence 58899999998 78999999999999999999753 2344444444 3565543 345555543 444
Q ss_pred EEeCCCccHHHHcCCCHHHHhhhCC
Q psy1367 77 ILEPFRKGVMEKLQLGPDVLCKSNP 101 (381)
Q Consensus 77 ~i~n~~pg~~~~lGl~~~~l~~~nP 101 (381)
+|-= ...-.+.-||-.|++..-+|
T Consensus 70 vVvl-G~aeaE~a~laAETVt~GDP 93 (150)
T PF04723_consen 70 VVVL-GAAEAEAAGLAAETVTNGDP 93 (150)
T ss_pred EEEe-cCCChhhhhhhhhhhccCCC
Confidence 3321 11223444555555544443
No 277
>PRK12743 oxidoreductase; Provisional
Probab=42.77 E-value=65 Score=29.27 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=40.7
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC--Cchhhh---ccCCcceEEeeCCCcchHHHH-HHHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ--PFVQDT---VGYGKKSLCINLKKAKGLSVM-KNLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~--~~~~~~---~nrgK~sv~ldl~~~~g~~~~-~~L~---~~aDv~i~n~ 81 (381)
-|-.+.+.|++.|++|+-+-..... ...... .+..-..+.+|+.+++..+.+ .++. ...|+||+|-
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3777889999999999887543221 111111 122334678999998875433 3333 3478998874
No 278
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.72 E-value=91 Score=28.76 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCc---ccHHHHHHHHHhcCCcEEEEccCCC-CCchhhhcc-CCc-ceEEeeCCCcchHHHHHHHH----h
Q psy1367 3 LKGITVLEFAGL---APAPFCGMILNEFGATVIRIDKHGA-QPFVQDTVG-YGK-KSLCINLKKAKGLSVMKNLA----N 72 (381)
Q Consensus 3 L~GvrVld~~~~---~agp~~~~~LadlGA~VikvE~p~~-~~~~~~~~n-rgK-~sv~ldl~~~~g~~~~~~L~----~ 72 (381)
|+|-++|=.+.. --|-.+++.|++.|+.||-+.+... ....-.... .++ ..+.+|+.+++..+.+.+-+ .
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 556556555532 2367789999999999997754311 011100101 122 35778999988876544433 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
.-|+||+|-
T Consensus 84 ~iD~linnA 92 (262)
T PRK07984 84 KFDGFVHSI 92 (262)
T ss_pred CCCEEEECC
Confidence 368999874
No 279
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=42.66 E-value=1.1e+02 Score=29.03 Aligned_cols=77 Identities=10% Similarity=-0.027 Sum_probs=47.9
Q ss_pred CCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEc-cCCCCCchhhhcc-----CCcceEEeeCCCcchHHHHHHHHhcCCE
Q psy1367 4 KGITVLEFA-GLAPAPFCGMILNEFGATVIRID-KHGAQPFVQDTVG-----YGKKSLCINLKKAKGLSVMKNLANQSDV 76 (381)
Q Consensus 4 ~GvrVld~~-~~~agp~~~~~LadlGA~VikvE-~p~~~~~~~~~~n-----rgK~sv~ldl~~~~g~~~~~~L~~~aDv 76 (381)
.|-+||=.+ ...-|....+.|.+.|.+|+-+- .+.........++ .+-+.+..|+.+++. +.++++..|+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~---~~~~~~~~d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGS---FELAIDGCET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchH---HHHHHcCCCE
Confidence 466777666 33447888888889999997543 2221111111111 122456779998765 6677788999
Q ss_pred EEeCCCc
Q psy1367 77 ILEPFRK 83 (381)
Q Consensus 77 ~i~n~~p 83 (381)
||++-.+
T Consensus 81 vih~A~~ 87 (325)
T PLN02989 81 VFHTASP 87 (325)
T ss_pred EEEeCCC
Confidence 9998753
No 280
>PRK12744 short chain dehydrogenase; Provisional
Probab=42.59 E-value=1.4e+02 Score=27.00 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=47.0
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCC-C-CC---chhhh---ccCCcceEEeeCCCcchHHHH-HHHH
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHG-A-QP---FVQDT---VGYGKKSLCINLKKAKGLSVM-KNLA 71 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~-~-~~---~~~~~---~nrgK~sv~ldl~~~~g~~~~-~~L~ 71 (381)
.|+|-+|+=.+ ..--|...++.|++.|++|+-+-... . .. ..... .+..-..+.+|+.+++..+.+ .+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 35666666554 22236778888999999988774321 1 11 11111 112234578899998875433 2222
Q ss_pred ---hcCCEEEeCCC
Q psy1367 72 ---NQSDVILEPFR 82 (381)
Q Consensus 72 ---~~aDv~i~n~~ 82 (381)
...|+||+|-.
T Consensus 85 ~~~~~id~li~~ag 98 (257)
T PRK12744 85 AAFGRPDIAINTVG 98 (257)
T ss_pred HhhCCCCEEEECCc
Confidence 35799998853
No 281
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=42.57 E-value=29 Score=34.39 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=29.3
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.+|+=++...||..|+..||..|.+|+-||+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC
Confidence 47888999999999999999999999999974
No 282
>PRK08643 acetoin reductase; Validated
Probab=42.34 E-value=56 Score=29.58 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCc--ceEEeeCCCcchHHH-HHHHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGK--KSLCINLKKAKGLSV-MKNLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK--~sv~ldl~~~~g~~~-~~~L~---~~aDv~i~n~ 81 (381)
-|-..++.|++.|++|+-+.+.... ......+ +.++ ..+.+|+.+++..+. +.++. ...|+||+|-
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3677888899999999988654311 1111111 1233 346789999887543 33333 2478888874
No 283
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=42.28 E-value=1e+02 Score=27.74 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhh-ccCCc--ceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDT-VGYGK--KSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~-~nrgK--~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
++|-+||=.+ ...-|..+.+.|++.|++|+-+-+.... ...... .+.+. +.+.+|+.+++..+.+.+-+ ..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3455566554 3344788888888999999988654321 111111 12232 35788999888754333322 35
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 82 ~d~vi~~a 89 (258)
T PRK12429 82 VDILVNNA 89 (258)
T ss_pred CCEEEECC
Confidence 78888875
No 284
>PRK07831 short chain dehydrogenase; Provisional
Probab=41.96 E-value=82 Score=28.66 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=47.9
Q ss_pred CCCcEEEEeCC--cccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc--CC-c--ceEEeeCCCcchHHHHHHHH---
Q psy1367 3 LKGITVLEFAG--LAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG--YG-K--KSLCINLKKAKGLSVMKNLA--- 71 (381)
Q Consensus 3 L~GvrVld~~~--~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n--rg-K--~sv~ldl~~~~g~~~~~~L~--- 71 (381)
++|-+||=.+. .--|-...+.|++.|++|+-+.+.... ......++ .+ + ..+.+|+.+++..+.+.+-+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45666776663 224788889999999999987643211 11111111 12 2 24667999987655444433
Q ss_pred -hcCCEEEeCC
Q psy1367 72 -NQSDVILEPF 81 (381)
Q Consensus 72 -~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 95 ~g~id~li~~a 105 (262)
T PRK07831 95 LGRLDVLVNNA 105 (262)
T ss_pred cCCCCEEEECC
Confidence 3569999875
No 285
>PRK08163 salicylate hydroxylase; Provisional
Probab=41.72 E-value=62 Score=31.63 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=31.0
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
-.+|+=++.+++|..++..|+..|-+|+-+|+-.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999753
No 286
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=41.58 E-value=1.4e+02 Score=24.34 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=62.2
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC--C-----C-----------------chhhhccCCcceEEeeCCCc
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--Q-----P-----------------FVQDTVGYGKKSLCINLKKA 61 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~--~-----~-----------------~~~~~~nrgK~sv~ldl~~~ 61 (381)
.||+=++-.--|....+.|+..|..-|.+=.++. + . ......|-+-+..+.+.+-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~- 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI- 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc-
Confidence 4677777766689999999999997666543321 0 0 0122345555555554444
Q ss_pred chHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 62 KGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 62 ~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
..+.+.++++.+|++|.+...-....+ | .+..++.+-.+|++...|+
T Consensus 82 -~~~~~~~~~~~~d~vi~~~d~~~~~~~-l-~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 82 -DEENIEELLKDYDIVIDCVDSLAARLL-L-NEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp -SHHHHHHHHHTSSEEEEESSSHHHHHH-H-HHHHHHTT-EEEEEEEETT
T ss_pred -ccccccccccCCCEEEEecCCHHHHHH-H-HHHHHHcCCCEEEEEeecC
Confidence 335678888999999998765333221 1 2345566666777776654
No 287
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=41.46 E-value=1.3e+02 Score=29.17 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=57.5
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|+|-+|-=++-+.-|.-.++.|.++|.+|+-..++......... .|=+ + . -+.+++++||||+...
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~--~G~~-v-~---------sl~Eaak~ADVV~llL 79 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA--DGFE-V-M---------SVSEAVRTAQVVQMLL 79 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH--cCCE-E-C---------CHHHHHhcCCEEEEeC
Confidence 477888777776666877789999999999877655221111111 1211 1 1 2789999999999887
Q ss_pred CccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 82 RKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
+-..-..+ ++.+.+....|+-+.+=--||
T Consensus 80 Pd~~t~~V-~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 80 PDEQQAHV-YKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred CChHHHHH-HHHHHHhcCCCCCEEEECCCc
Confidence 63222211 234456666676555433343
No 288
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=41.12 E-value=29 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred EEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 8 VLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 8 Vld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
||=++..+||-.|+..+++.|++||-||.-.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 5667888999999999999999999999865
No 289
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.98 E-value=1.6e+02 Score=26.53 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCcEEEEeCCcccHHHHHHHHHh-cCCc--EEEEcc-CCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEE
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNE-FGAT--VIRIDK-HGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVI 77 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~Lad-lGA~--VikvE~-p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~ 77 (381)
.|-+|||++.. +|.++ ++++. +|++ ||-|+= |-.+ -.|=..+-.|+..++-.+.+.+.+.. +|||
T Consensus 45 ~~~~ViDLGAA-PGgWs-Qva~~~~~~~~~ivavDi~p~~~-------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAA-PGGWS-QVAAKKLGAGGKIVAVDILPMKP-------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCC-CCcHH-HHHHHHhCCCCcEEEEECccccc-------CCCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 37899999964 67764 44444 4444 777762 2111 12234577799999999999998877 6999
Q ss_pred EeCCCc
Q psy1367 78 LEPFRK 83 (381)
Q Consensus 78 i~n~~p 83 (381)
+.++-|
T Consensus 116 ~sD~ap 121 (205)
T COG0293 116 LSDMAP 121 (205)
T ss_pred EecCCC
Confidence 988766
No 290
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=40.87 E-value=2.7e+02 Score=25.02 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=47.5
Q ss_pred CCCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCC-chhhhc-cCCc--ceEEeeCCCcchHHHH-HHHH---h
Q psy1367 2 ALKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQP-FVQDTV-GYGK--KSLCINLKKAKGLSVM-KNLA---N 72 (381)
Q Consensus 2 pL~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~~~-nrgK--~sv~ldl~~~~g~~~~-~~L~---~ 72 (381)
.|+|-+||=.+. .--|-...+.|+..|++|+-+.+..... ..-..+ ..++ ..+.+|+.+++..+.+ .++. .
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777777662 2226777888999999999876543211 111111 1232 2467899988764432 2222 3
Q ss_pred cCCEEEeCCC
Q psy1367 73 QSDVILEPFR 82 (381)
Q Consensus 73 ~aDv~i~n~~ 82 (381)
..|++|+|--
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 4699999853
No 291
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.79 E-value=96 Score=29.44 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=29.8
Q ss_pred cCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 48 nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
|+|-.....+-++++ +.+.+++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 181 ~~~atVt~chs~T~~----l~~~~~~ADIvIsAvGk~~~-----i~~~~ik---~gavVIDvG 231 (284)
T PRK14177 181 EMNATVTLCHSKTQN----LPSIVRQADIIVGAVGKPEF-----IKADWIS---EGAVLLDAG 231 (284)
T ss_pred HCCCEEEEeCCCCCC----HHHHHhhCCEEEEeCCCcCc-----cCHHHcC---CCCEEEEec
Confidence 334333333444543 778899999999764 3333 3445544 777777754
No 292
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=40.79 E-value=1.1e+02 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.1
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
+|+=++..++|-.|+..||..|-+|+-+|.-.
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57788999999999999999999999999764
No 293
>PRK07454 short chain dehydrogenase; Provisional
Probab=40.67 E-value=86 Score=28.02 Aligned_cols=75 Identities=9% Similarity=0.098 Sum_probs=44.8
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHHHH----hcCCEE
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKNLA----NQSDVI 77 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~ 77 (381)
+|+=.+ ...-|....+.|++.|++|+-+.+.... ....... +.+-..+.+|+.+++..+.+.+-+ ...|+|
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 87 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVL 87 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 344444 2334788899999999999998765321 1111111 122234778999987755433322 247899
Q ss_pred EeCC
Q psy1367 78 LEPF 81 (381)
Q Consensus 78 i~n~ 81 (381)
|+|-
T Consensus 88 v~~a 91 (241)
T PRK07454 88 INNA 91 (241)
T ss_pred EECC
Confidence 8874
No 294
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=40.66 E-value=47 Score=27.14 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.1
Q ss_pred cchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHHhhhccccc
Q psy1367 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLGLSGILSLL 137 (381)
Q Consensus 61 ~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A~sG~~~~~ 137 (381)
....+.+.+.++.+|++|....+ .++.+.|.+. |+|=+++..|-|-+ ..|.-....-|+.-.+
T Consensus 26 ~~~~~~~~~~l~~~d~ii~~~~~------~~~~~~l~~~-~~Lk~I~~~~~G~d-------~id~~~a~~~gI~V~n 88 (133)
T PF00389_consen 26 SPSEEELAERLKDADAIIVGSGT------PLTAEVLEAA-PNLKLISTAGAGVD-------NIDLEAAKERGIPVTN 88 (133)
T ss_dssp SSSHHHHHHHHTTESEEEESTTS------TBSHHHHHHH-TT-SEEEESSSSCT-------TB-HHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCeEEEEcCCC------CcCHHHHhcc-ceeEEEEEcccccC-------cccHHHHhhCeEEEEE
Confidence 55567899999999999987766 5777888777 88888888776654 4678778888877544
No 295
>PRK05884 short chain dehydrogenase; Provisional
Probab=40.46 E-value=55 Score=29.29 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHH-HhcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNL-ANQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L-~~~aDv~i~n~ 81 (381)
-|-...+.|++.|++|+-+.+.... ......+ +.+.+..|+.+++..+.+.+- ....|+||+|.
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~a 77 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL--DVDAIVCDNTDPASLEEARGLFPHHLDTIVNVP 77 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--cCcEEecCCCCHHHHHHHHHHHhhcCcEEEECC
Confidence 3777888899999999988653211 0111111 346788999998775544332 23578888774
No 296
>PRK08013 oxidoreductase; Provisional
Probab=40.43 E-value=60 Score=32.01 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=29.8
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
..|+=++.+++|..++..|+..|-+|+-||+-.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 568888999999999999999999999999754
No 297
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.23 E-value=98 Score=27.61 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC-chhh-hccCCc--ceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP-FVQD-TVGYGK--KSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~-~~nrgK--~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
+++-+|+=.+ ...-|-...+.|+..|++||-+-+..... .... ..+.+. ..+.+|+.+++..+.+.+=+ ..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4555555554 22336677778889999999987653211 1111 112222 23677998877644332222 36
Q ss_pred CCEEEeCCC
Q psy1367 74 SDVILEPFR 82 (381)
Q Consensus 74 aDv~i~n~~ 82 (381)
.|+||+|..
T Consensus 85 id~vi~~ag 93 (239)
T PRK07666 85 IDILINNAG 93 (239)
T ss_pred ccEEEEcCc
Confidence 899998753
No 298
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=40.13 E-value=80 Score=31.69 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
+++.| |+|..+..+++++..+|..||++|+-+..
T Consensus 163 ~~~~kVvvD~~nG~~~~~~~~ll~~lg~~v~~ln~ 197 (429)
T PRK14322 163 LTGEMVSLDLANGATTTTAKEVFEFLGAKVEVFND 197 (429)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHcCCEEEEECC
Confidence 34555 88999999999999999999999998853
No 299
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.95 E-value=60 Score=29.53 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=60.6
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHH-HhcCCEEEeCCCccH
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNL-ANQSDVILEPFRKGV 85 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L-~~~aDv~i~n~~pg~ 85 (381)
+++=++-.-.|-..++.|++.|-+|+-|+.-...-.-|..-..+-+.+..|-.++ +.|+++ +.+||+||-...-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~---~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDE---DVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCH---HHHHhcCCCcCCEEEEeeCCCH
Confidence 3444454456888899999999999999976421122233336667777766554 568888 899999987654433
Q ss_pred HHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 86 MEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 86 ~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.... +.--.++..+..-|++.+.
T Consensus 79 ~N~i-~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 79 VNSV-LALLALKEFGVPRVIARAR 101 (225)
T ss_pred HHHH-HHHHHHHhcCCCcEEEEec
Confidence 2221 1111223345555665554
No 300
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=39.83 E-value=34 Score=32.06 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEcc
Q psy1367 1 MALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 1 ~pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~ 36 (381)
.||+|+||--.-+.-+ ..+-...|.++||+|.-.-+
T Consensus 39 kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~s 75 (268)
T PF05221_consen 39 KPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGS 75 (268)
T ss_dssp -TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEES
T ss_pred CCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecC
Confidence 3999999998777555 46778999999999987664
No 301
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.80 E-value=54 Score=32.99 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=47.0
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCch--hhhc-cCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFV--QDTV-GYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~--~~~~-nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
||+=++-..+|-.++++|+..|++|+-.|....+... ...+ .. .+.+.+..+...+.+..++.+.|.||-+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~---gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQE---GITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHc---CCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 5666777778888999999999999999865433211 1112 22 3444444444445566778889988874
No 302
>PLN02477 glutamate dehydrogenase
Probab=39.72 E-value=59 Score=32.58 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-------C--chhhhccCCcceEEeeCCCc---chHHHHHH
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-------P--FVQDTVGYGKKSLCINLKKA---KGLSVMKN 69 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-------~--~~~~~~nrgK~sv~ldl~~~---~g~~~~~~ 69 (381)
.|+|.||+=.+-.-.|-+++++|.+.||.|+-|-...+. + ....+.+.++ ++. ++... +..+ +.
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g-~l~-~~~~a~~i~~~e-~l- 278 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGG-GLK-GFPGGDPIDPDD-IL- 278 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC-chh-ccccceEecCcc-ce-
Confidence 478999988887777999999999999999977544321 1 1112222222 221 22110 1112 22
Q ss_pred HHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHHH
Q psy1367 70 LANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYLG 129 (381)
Q Consensus 70 L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~A 129 (381)
...+||||=+-..++ |+.+...+++ |.+-.=|.++|. .+.-|-+++.
T Consensus 279 -~~~~DvliP~Al~~~-----I~~~na~~i~-----ak~I~egAN~p~--t~ea~~~L~~ 325 (410)
T PLN02477 279 -VEPCDVLIPAALGGV-----INKENAADVK-----AKFIVEAANHPT--DPEADEILRK 325 (410)
T ss_pred -eccccEEeecccccc-----CCHhHHHHcC-----CcEEEeCCCCCC--CHHHHHHHHH
Confidence 238999996644443 5556666655 555566778886 3344444433
No 303
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=39.65 E-value=1e+02 Score=29.49 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=22.7
Q ss_pred HHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... |... =+..+-++ |+-|.+++.
T Consensus 204 l~~~~~~ADIvv~Av--Gk~~--~i~~~~vk---~gavVIDvG 239 (299)
T PLN02516 204 PESIVREADIVIAAA--GQAM--MIKGDWIK---PGAAVIDVG 239 (299)
T ss_pred HHHHHhhCCEEEEcC--CCcC--ccCHHHcC---CCCEEEEee
Confidence 778899999999864 2221 13334443 677776654
No 304
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.64 E-value=1e+02 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.467 Sum_probs=23.5
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+++++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 195 l~~~~~~ADIvIsAvGkp~~-----i~~~~ik---~gavVIDvG 230 (297)
T PRK14186 195 LASITREADILVAAAGRPNL-----IGAEMVK---PGAVVVDVG 230 (297)
T ss_pred HHHHHhhCCEEEEccCCcCc-----cCHHHcC---CCCEEEEec
Confidence 678899999999864 3332 3445544 677777754
No 305
>KOG0725|consensus
Probab=39.40 E-value=1.1e+02 Score=28.72 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC--CchhhhccC---Ccc--eEEeeCCCcchHHH-HHHHH
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVGY---GKK--SLCINLKKAKGLSV-MKNLA 71 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~nr---gK~--sv~ldl~~~~g~~~-~~~L~ 71 (381)
.|+|-.+|-.+ +.+ |--.+..||.+||.|+-.-+.... ...-..... +++ .+..|.+++++++. +...+
T Consensus 5 ~l~gkvalVTG~s~GI-G~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGI-GKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 37777777766 333 667789999999999988765321 111100111 222 36679998887763 33333
Q ss_pred ----hcCCEEEeCCCc
Q psy1367 72 ----NQSDVILEPFRK 83 (381)
Q Consensus 72 ----~~aDv~i~n~~p 83 (381)
..-||||.|--.
T Consensus 84 ~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGA 99 (270)
T ss_pred HHhCCCCCEEEEcCCc
Confidence 348999988643
No 306
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=39.32 E-value=62 Score=31.30 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=28.4
Q ss_pred EEEeCCcccHHHHHHHHHhcCCcEEEEccCCC
Q psy1367 8 VLEFAGLAPAPFCGMILNEFGATVIRIDKHGA 39 (381)
Q Consensus 8 Vld~~~~~agp~~~~~LadlGA~VikvE~p~~ 39 (381)
|+=++..++|..++..|+..|.+|+-+|+...
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 56678899999999999999999999998653
No 307
>PRK14031 glutamate dehydrogenase; Provisional
Probab=39.05 E-value=45 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|+|.||+=-+-+-.|-++++.|.++||.||-|-+..
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5899999999988889999999999999999987643
No 308
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.86 E-value=1.1e+02 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=29.8
Q ss_pred cCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 48 nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
|+|-....++-++++ +.+.+++|||||... +|+. ++.+-+ .|+-|.+++.
T Consensus 179 ~~~atVt~chs~T~n----l~~~~~~ADIvIsAvGkp~~-----i~~~~v---k~GavVIDvG 229 (282)
T PRK14166 179 NAGATVSVCHIKTKD----LSLYTRQADLIIVAAGCVNL-----LRSDMV---KEGVIVVDVG 229 (282)
T ss_pred HCCCEEEEeCCCCCC----HHHHHhhCCEEEEcCCCcCc-----cCHHHc---CCCCEEEEec
Confidence 344333334444443 888999999999865 3333 334443 4777877754
No 309
>PLN02214 cinnamoyl-CoA reductase
Probab=38.74 E-value=1.1e+02 Score=29.55 Aligned_cols=78 Identities=18% Similarity=0.037 Sum_probs=49.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCC-C-chhhhccCC---cceEEeeCCCcchHHHHHHHHhcCCE
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQ-P-FVQDTVGYG---KKSLCINLKKAKGLSVMKNLANQSDV 76 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~-~-~~~~~~nrg---K~sv~ldl~~~~g~~~~~~L~~~aDv 76 (381)
+.+-+|+=.+. ..-|....+.|.+.|.+|+-+-+.... . .....+..+ -..+..|+.+++ .+.++++.+|+
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~d~ 84 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYE---ALKAAIDGCDG 84 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChH---HHHHHHhcCCE
Confidence 45677777663 455777778888899999876543211 1 111112111 124567988765 47777889999
Q ss_pred EEeCCCc
Q psy1367 77 ILEPFRK 83 (381)
Q Consensus 77 ~i~n~~p 83 (381)
||++-.+
T Consensus 85 Vih~A~~ 91 (342)
T PLN02214 85 VFHTASP 91 (342)
T ss_pred EEEecCC
Confidence 9998754
No 310
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.61 E-value=2.7e+02 Score=27.00 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=62.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEE-EccCCCC------Cchhh-------------------hccCCcceEEe
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIR-IDKHGAQ------PFVQD-------------------TVGYGKKSLCI 56 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~Vik-vE~p~~~------~~~~~-------------------~~nrgK~sv~l 56 (381)
|..-+|+=++-+--|..++..|+..|..-|. |++-.-. ..+|. ..|.+=+.-++
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 5677888888877799999999999985555 5442210 11111 11222111122
Q ss_pred --eCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEee-CCC
Q psy1367 57 --NLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSG-YGQ 113 (381)
Q Consensus 57 --dl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isg-fG~ 113 (381)
|+. .+.+.+++.++|+||.....-. .++-+. +..++.+-.+||++..| +|+
T Consensus 102 ~~~~~----~~~~~~~~~~~DlVid~~D~~~-~r~~in-~~~~~~~ip~i~~~~~g~~G~ 155 (338)
T PRK12475 102 VTDVT----VEELEELVKEVDLIIDATDNFD-TRLLIN-DLSQKYNIPWIYGGCVGSYGV 155 (338)
T ss_pred eccCC----HHHHHHHhcCCCEEEEcCCCHH-HHHHHH-HHHHHcCCCEEEEEecccEEE
Confidence 322 2457888999999999875432 232222 23445567788887765 443
No 311
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.48 E-value=74 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=24.8
Q ss_pred eCCcccHHHHHHHHHhcCCcEEEEccCCCC
Q psy1367 11 FAGLAPAPFCGMILNEFGATVIRIDKHGAQ 40 (381)
Q Consensus 11 ~~~~~agp~~~~~LadlGA~VikvE~p~~~ 40 (381)
++..++|=.++..|++.|.+|.-+|.-...
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 356788999999999999999999986543
No 312
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=38.45 E-value=80 Score=29.86 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCccH
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGV 85 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg~ 85 (381)
.+|+=.+-+.-|..-++.|...|-.|.-+.... ..++-|+...+++..+.....+...++.||+||-+-+...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~-------~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDR-------SAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecC-------cHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 356667777778888999999999996665443 2345566666777766555566788899999999998877
Q ss_pred HHHcCCCHHHHh-hhCCCcEEEEEeeC
Q psy1367 86 MEKLQLGPDVLC-KSNPRLIYARLSGY 111 (381)
Q Consensus 86 ~~~lGl~~~~l~-~~nP~lI~~~isgf 111 (381)
...+ -+++. ...|+.|.++++..
T Consensus 77 ~~~~---l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 77 TEEV---LKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred HHHH---HHHhcccCCCCCEEEecccc
Confidence 6542 12333 34567777776643
No 313
>PRK07791 short chain dehydrogenase; Provisional
Probab=38.45 E-value=1.3e+02 Score=28.04 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCC-------CCC---chhhhc-cCCc--ceEEeeCCCcchHHH
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHG-------AQP---FVQDTV-GYGK--KSLCINLKKAKGLSV 66 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~-------~~~---~~~~~~-nrgK--~sv~ldl~~~~g~~~ 66 (381)
.|+|-+||=.+ ..| |-..++.|++.|++|+-+.... ... ..-..+ ..|. ..+.+|+.+++..+.
T Consensus 3 ~l~~k~~lITGas~GI-G~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 3 LLDGRVVIVTGAGGGI-GRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred ccCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 35666666555 333 6777888999999999874321 001 111111 1222 346689999887554
Q ss_pred HH-HHH---hcCCEEEeCC
Q psy1367 67 MK-NLA---NQSDVILEPF 81 (381)
Q Consensus 67 ~~-~L~---~~aDv~i~n~ 81 (381)
+. ++. ..-|+||+|-
T Consensus 82 ~~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 33 333 4568999874
No 314
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=38.45 E-value=2.7e+02 Score=26.35 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEEeC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVILEP 80 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i~n 80 (381)
.|-+|+=++...-|-++.+++..+|+. ||-+++...-......+.. ...+|.++++ .+.+.++.. .+|++++.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga---~~~i~~~~~~-~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA---DFVINSGQDD-VQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---CEEEcCCcch-HHHHHHHhCCCCCCEEEEC
Confidence 366777777666677788888899999 8888754211011111221 2345666555 666777764 58999987
Q ss_pred CCc
Q psy1367 81 FRK 83 (381)
Q Consensus 81 ~~p 83 (381)
...
T Consensus 239 ~g~ 241 (339)
T cd08239 239 SGN 241 (339)
T ss_pred CCC
Confidence 543
No 315
>PRK07326 short chain dehydrogenase; Provisional
Probab=38.21 E-value=1.2e+02 Score=26.93 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc--CCcceEEeeCCCcchHHH-HHHHH---hcC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG--YGKKSLCINLKKAKGLSV-MKNLA---NQS 74 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n--rgK~sv~ldl~~~~g~~~-~~~L~---~~a 74 (381)
+.|-+|+=.+ ..--|-...+.|++.|++|+-+-+.... ......+. ..-..+..|+.+++..+. +.++. ...
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5566677665 2334777778888999999988653211 11111221 122346778888765432 22222 257
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||++-
T Consensus 84 d~vi~~a 90 (237)
T PRK07326 84 DVLIANA 90 (237)
T ss_pred CEEEECC
Confidence 8888774
No 316
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=38.19 E-value=2e+02 Score=27.62 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=53.1
Q ss_pred CCCCcEEEEeCCc---ccHHHHHHHHHhcCC-cEEEEccCCC-CCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCE
Q psy1367 2 ALKGITVLEFAGL---APAPFCGMILNEFGA-TVIRIDKHGA-QPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDV 76 (381)
Q Consensus 2 pL~GvrVld~~~~---~agp~~~~~LadlGA-~VikvE~p~~-~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv 76 (381)
.|+|++|.=++.. -....-...|+-+|+ +|.-+-|++- |.... + + ++.+- .-+.+.++.|||
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~---~-~--~~~~~-------~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVG---N-D--SIKKF-------TELKPSLLNSDV 220 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccc---c-c--eEEEE-------cCHHHHhCCCCE
Confidence 4789999888863 223444678899998 8888887642 11100 0 1 23320 115677899999
Q ss_pred EEeCCC-------ccH---HH-HcCCCHHHHhhhCCCcEEEE
Q psy1367 77 ILEPFR-------KGV---ME-KLQLGPDVLCKSNPRLIYAR 107 (381)
Q Consensus 77 ~i~n~~-------pg~---~~-~lGl~~~~l~~~nP~lI~~~ 107 (381)
|...-= +.. .. .+.++.+-++..+|+.|+.+
T Consensus 221 vy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mH 262 (310)
T PRK13814 221 IVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMH 262 (310)
T ss_pred EEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEEC
Confidence 986211 001 11 25556566655566655553
No 317
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=38.14 E-value=2.7e+02 Score=26.27 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=55.5
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC-c
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR-K 83 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~-p 83 (381)
|-+|+=++...-|-++.+++..+|++||-+.+..........+.. .-.+|.++++-.+.+.++ +..|+++++.. +
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~---~~~i~~~~~~~~~~~~~~-~~~d~vi~~~g~~ 239 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA---HHYIDTSKEDVAEALQEL-GGAKLILATAPNA 239 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC---cEEecCCCccHHHHHHhc-CCCCEEEECCCch
Confidence 446666666666888899999999999998765321111111221 123455544434445555 56899998652 3
Q ss_pred cHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 84 GVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 84 g~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
..++ +.++..++.=.|+.+...
T Consensus 240 ~~~~------~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 240 KAIS------ALVGGLAPRGKLLILGAA 261 (333)
T ss_pred HHHH------HHHHHcccCCEEEEEecC
Confidence 2332 234555555555555544
No 318
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=38.09 E-value=71 Score=33.24 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.++| |+|..+..+++++..+|..+|++|+-+..-
T Consensus 226 ~~lkVvvD~~~Ga~~~~~~~il~~lG~~v~~l~~~ 260 (543)
T TIGR01132 226 AGLRLGVDPLGGSGIDYWKRIAEKYNLNLTLVNPQ 260 (543)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHcCCCEEEEcCe
Confidence 4666 479999999999999999999999988654
No 319
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=37.96 E-value=1e+02 Score=29.14 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=46.9
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
+.|-+||=.+ ..--|-..++.|+..|++|+-+-+.... ......+ +..=..+.+|+.+++..+.+.+-+ ..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 4565566554 2233778889999999999988543211 1111111 112245678999987755433322 24
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 84 iD~li~nA 91 (322)
T PRK07453 84 LDALVCNA 91 (322)
T ss_pred ccEEEECC
Confidence 89999984
No 320
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.82 E-value=2e+02 Score=27.09 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=55.1
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcce-----EEe--eCCCcchHHHHHHHHhcCCEEEe
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKS-----LCI--NLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~s-----v~l--dl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
+|.=++.+.-|-..+..|++-|-+|+-+.+... ..-...+.+... ..+ ..+... -..+.++.+|++|.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE--QAAEINADRENPRYLPGIKLPDNLRATT---DLAEALADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH--HHHHHHHcCcccccCCCCcCCCCeEEeC---CHHHHHhCCCEEEE
Confidence 444455555677778888999999988876421 000000111000 000 011111 13456789999999
Q ss_pred CCCccHHHHcCCCHHHHhh-hCCCcEEEEEe-eCCC
Q psy1367 80 PFRKGVMEKLQLGPDVLCK-SNPRLIYARLS-GYGQ 113 (381)
Q Consensus 80 n~~pg~~~~lGl~~~~l~~-~nP~lI~~~is-gfG~ 113 (381)
+.++...+.. ++.+.. .+|+-++++++ |++.
T Consensus 78 ~v~~~~~~~v---~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 78 AVPSQALREV---LKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred eCCHHHHHHH---HHHHHhhcCCCCEEEEEeecccC
Confidence 9988655442 234443 46777888887 8864
No 321
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=37.81 E-value=2.9e+02 Score=24.45 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCC-C-----Cc-----------------hhhhccCCcceEEeeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGA-Q-----PF-----------------VQDTVGYGKKSLCINL 58 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~-~-----~~-----------------~~~~~nrgK~sv~ldl 58 (381)
|..-+|+=++-.--|..+.+.|+..|.. ++-|.+-.- . .. .....|.+-+.-..+-
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 5667888888777789999999999984 444443210 0 00 1112333322222222
Q ss_pred CCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeCC
Q psy1367 59 KKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 59 ~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG 112 (381)
+-.+ +.+.++++++|+||.....-.. +.-+ -+..++.+-.+|+++..||.
T Consensus 99 ~i~~--~~~~~~~~~~D~Vi~~~d~~~~-r~~l-~~~~~~~~ip~i~~~~~g~~ 148 (202)
T TIGR02356 99 RVTA--ENLELLINNVDLVLDCTDNFAT-RYLI-NDACVALGTPLISAAVVGFG 148 (202)
T ss_pred cCCH--HHHHHHHhCCCEEEECCCCHHH-HHHH-HHHHHHcCCCEEEEEeccCe
Confidence 2211 3467889999999988643222 2222 23456667678887776643
No 322
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=37.78 E-value=37 Score=32.13 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhc----CC-------cEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHH
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEF----GA-------TVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNL 70 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~Ladl----GA-------~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L 70 (381)
+|+..|||=++-+-||--++++|.+. |. +++-|++.|---.-...++.-|+-.+-+... ....-|.+.
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-~~~~~L~e~ 100 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-KEGKSLLEV 100 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-ccCCCHHHH
Confidence 68899999999999999999999998 98 7777877651000000011111111111000 011238888
Q ss_pred Hh--cCCEEEeCCC-ccHHHHcCCCHHHHhhhC---CCcEEEEEe
Q psy1367 71 AN--QSDVILEPFR-KGVMEKLQLGPDVLCKSN---PRLIYARLS 109 (381)
Q Consensus 71 ~~--~aDv~i~n~~-pg~~~~lGl~~~~l~~~n---P~lI~~~is 109 (381)
++ ++||||=.-. ||. ++.|-+++.+ ++-|.-.+|
T Consensus 101 i~~v~ptvlIG~S~~~g~-----ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 101 VKAVKPTVLIGLSGVGGA-----FTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred HHhcCCCEEEEeCCCCCC-----CCHHHHHHHHhcCCCCEEEECC
Confidence 98 8999996553 454 3446666665 888876776
No 323
>PRK08862 short chain dehydrogenase; Provisional
Probab=37.76 E-value=1.5e+02 Score=26.63 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hccCCcceEEeeCCCcchHHH-HHHHHh--
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQD---TVGYGKKSLCINLKKAKGLSV-MKNLAN-- 72 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~nrgK~sv~ldl~~~~g~~~-~~~L~~-- 72 (381)
-|+|-+||=.+ ..+ |...++.|++.|++|+-+-+-... ..... ..+..-..+.+|+.+++..+. +.++.+
T Consensus 2 ~~~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 2 DIKSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35666666554 333 777889999999999988543211 11111 112222346679988877653 344432
Q ss_pred --cCCEEEeCC
Q psy1367 73 --QSDVILEPF 81 (381)
Q Consensus 73 --~aDv~i~n~ 81 (381)
.-|+||.|-
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 568888873
No 324
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=37.71 E-value=1.2e+02 Score=28.91 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=45.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcC--CcEEEEccCCCC-CchhhhccC-CcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFG--ATVIRIDKHGAQ-PFVQDTVGY-GKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlG--A~VikvE~p~~~-~~~~~~~nr-gK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
|+|-+||=.+. ..-|....+.|+..| .+|+-+-+.... ......++. +-..+..|+.+++. +.++++..|+|
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~---l~~~~~~iD~V 78 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKER---LTRALRGVDYV 78 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHH---HHHHHhcCCEE
Confidence 46777776662 334666666666666 788877543211 011111221 23456789988654 66777889999
Q ss_pred EeCC
Q psy1367 78 LEPF 81 (381)
Q Consensus 78 i~n~ 81 (381)
|++-
T Consensus 79 ih~A 82 (324)
T TIGR03589 79 VHAA 82 (324)
T ss_pred EECc
Confidence 9974
No 325
>PRK12320 hypothetical protein; Provisional
Probab=37.70 E-value=1.8e+02 Score=31.45 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=59.3
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCccH
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGV 85 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg~ 85 (381)
|||=.+ .+.-|....+.|.+.|.+|+-+.+.... ..+.+-+.+..|+.++. +.+++..+|+||+.-....
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-----~~~~~ve~v~~Dl~d~~----l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-----ALDPRVDYVCASLRNPV----LQELAGEADAVIHLAPVDT 72 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-----cccCCceEEEccCCCHH----HHHHhcCCCEEEEcCccCc
Confidence 455555 3444666667777889999988764211 12335567888998862 6788889999999865431
Q ss_pred HH-----HcCCC--HHHHhhhCCCcEEEEEeeCCC
Q psy1367 86 ME-----KLQLG--PDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 86 ~~-----~lGl~--~~~l~~~nP~lI~~~isgfG~ 113 (381)
.. ..|.- .+.+++.+.++||+| |.+|.
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~S-S~~G~ 106 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVS-QAAGR 106 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEE-CCCCC
Confidence 10 01100 233456667888877 44554
No 326
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.67 E-value=1.6e+02 Score=26.39 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc-cCCc--ceEEeeCCCcchHHHH-HHH---H
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV-GYGK--KSLCINLKKAKGLSVM-KNL---A 71 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~-nrgK--~sv~ldl~~~~g~~~~-~~L---~ 71 (381)
.+++-+||=.+ ...-|-..++.|++.|++|+-+..+... ....... ..++ ..+..|+.+++..+.+ .++ .
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY 82 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc
Confidence 35666777665 2334777788899999999766543211 1111111 1122 2466799888764332 222 2
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 83 ~~~d~vi~~a 92 (252)
T PRK06077 83 GVADILVNNA 92 (252)
T ss_pred CCCCEEEECC
Confidence 3578888875
No 327
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=37.57 E-value=1.5e+02 Score=28.28 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=54.7
Q ss_pred CCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEccCCC-CCchhh-----h-ccCCcceEEeeCCCcchHHHHHHHHhc
Q psy1367 2 ALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDKHGA-QPFVQD-----T-VGYGKKSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~p~~-~~~~~~-----~-~nrgK~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
.|+|+||.=++..-- ...-...|+-+|++|.-+-|++- +...+. . -+.|.+....| + +. -+++
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~----d----~~-a~~~ 214 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS----D----IE-AIEG 214 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc----C----HH-HHCC
Confidence 578999987775221 23336678999999999998762 222111 1 12343322222 1 12 2689
Q ss_pred CCEEEeCCC---------ccH---HHHcCCCHHHHhhhCCCcEEEE
Q psy1367 74 SDVILEPFR---------KGV---MEKLQLGPDVLCKSNPRLIYAR 107 (381)
Q Consensus 74 aDv~i~n~~---------pg~---~~~lGl~~~~l~~~nP~lI~~~ 107 (381)
||||...-. +.. ...++++.+-++..+|+ |+.+
T Consensus 215 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH 259 (302)
T PRK14805 215 HDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMH 259 (302)
T ss_pred CCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEEC
Confidence 999998321 111 23467777777666666 4444
No 328
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=37.48 E-value=97 Score=29.04 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 14 LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 14 ~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
..-|....+.|++.|.+|+-+-+........ ...+=+.+..|+.+++ .+.++++.+|+||++-
T Consensus 10 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~D~~~~~---~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 10 GFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL--EGLDVEIVEGDLRDPA---SLRKAVAGCRALFHVA 72 (328)
T ss_pred cchhHHHHHHHHHCCCEEEEEEecCcccccc--ccCCceEEEeeCCCHH---HHHHHHhCCCEEEEec
Confidence 4457778888899999999887643221111 1123345778988864 4788888999999875
No 329
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=37.28 E-value=2.6e+02 Score=25.64 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=65.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-------Cchh-----------------hhccCCcceEEeeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-------PFVQ-----------------DTVGYGKKSLCINL 58 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-------~~~~-----------------~~~nrgK~sv~ldl 58 (381)
|.+-||+=++-.--|..+...|+..|..=|.+=.++.- ..+| ...|.+=+....+-
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 56778998988777999999999999877776443310 0111 12233333333333
Q ss_pred CCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 59 KKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 59 ~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
+-. .+-+.+++.++|+||+....-. .|+-| .+..++.+-.+|+++..||
T Consensus 102 ~i~--~~~~~~~~~~~DlVvd~~D~~~-~r~~l-n~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 102 KLD--DAELAALIAEHDIVVDCTDNVE-VRNQL-NRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred cCC--HHHHHHHhhcCCEEEEcCCCHH-HHHHH-HHHHHHcCCCEEEEEeccc
Confidence 222 2457788999999998764422 22222 3456677888888876653
No 330
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.28 E-value=49 Score=35.13 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|-+|+=++.+.+|-.++..|+.+|.+|+-+|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999999999999999999999999999999765
No 331
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.27 E-value=1e+02 Score=27.55 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=51.2
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC------CCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEE
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA------QPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVI 77 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~------~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~ 77 (381)
++-+||-|+.++-|-|.+.+|+. --+|.-+.+-.- ++.-|... ++-+.| +-|++
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~~v~Fr~~----------~~~~~G---------~~Dli 103 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPNNVKFRNL----------LKFIRG---------EVDLI 103 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCCCccHhhh----------cCCCCC---------ceeEE
Confidence 46689999999999999999988 334444443210 01111111 333334 46888
Q ss_pred EeCCCccHHHHcCCCHHHHhhhCCCcEEEE
Q psy1367 78 LEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107 (381)
Q Consensus 78 i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~ 107 (381)
|+--.-| |+.++.|++.||+...|.
T Consensus 104 vDlTGlG-----G~~Pe~L~~fnp~vfiVE 128 (254)
T COG4017 104 VDLTGLG-----GIEPEFLAKFNPKVFIVE 128 (254)
T ss_pred EeccccC-----CCCHHHHhccCCceEEEE
Confidence 8643323 788999999999988773
No 332
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=37.25 E-value=53 Score=33.16 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCc-ceEEeeCCCcchHHHHHHH--H-hcCCEEE
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGK-KSLCINLKKAKGLSVMKNL--A-NQSDVIL 78 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK-~sv~ldl~~~~g~~~~~~L--~-~~aDv~i 78 (381)
.|-+|||++.+. |-+ +..||..++.|+=||.-..- ...-.....++ ..+.+- ..+..+.+.++ . ...|+||
T Consensus 297 ~~~~VLDlgcGt-G~~-sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 297 PGDRVLDLFCGL-GNF-TLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFY--HANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCEEEEEeccC-CHH-HHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE--EeChHHhhhhhhhhcCCCCEEE
Confidence 578999999874 544 55688889999999965321 00011111111 112221 11122222221 1 3579999
Q ss_pred eCCCccHHHHcCCCHHHHhhhC-CCcEEEEEee
Q psy1367 79 EPFRKGVMEKLQLGPDVLCKSN-PRLIYARLSG 110 (381)
Q Consensus 79 ~n~~pg~~~~lGl~~~~l~~~n-P~lI~~~isg 110 (381)
-|-+-.-+... -+.|.+.. .++||+|..+
T Consensus 373 ~dPPr~g~~~~---~~~l~~~~~~~ivyvSCnp 402 (443)
T PRK13168 373 LDPPRAGAAEV---MQALAKLGPKRIVYVSCNP 402 (443)
T ss_pred ECcCCcChHHH---HHHHHhcCCCeEEEEEeCh
Confidence 87532212221 14555544 4677887754
No 333
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=37.24 E-value=1.7e+02 Score=27.83 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=48.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC---Cchhhh------ccCCcceEEeeCCCcchHHHHHHHHh
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ---PFVQDT------VGYGKKSLCINLKKAKGLSVMKNLAN 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~---~~~~~~------~nrgK~sv~ldl~~~~g~~~~~~L~~ 72 (381)
++|-+||=.+ ...-|-...+.|...|.+|+-+-..... ...... .+.+-+.+..|+.+++. +.++++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~ 80 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASS---LRRWLD 80 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHH---HHHHHH
Confidence 5677777776 3455888888898999999987543211 111000 01123457789988765 445554
Q ss_pred c--CCEEEeCCC
Q psy1367 73 Q--SDVILEPFR 82 (381)
Q Consensus 73 ~--aDv~i~n~~ 82 (381)
. .|+||++-.
T Consensus 81 ~~~~d~Vih~A~ 92 (340)
T PLN02653 81 DIKPDEVYNLAA 92 (340)
T ss_pred HcCCCEEEECCc
Confidence 3 699999854
No 334
>PRK07035 short chain dehydrogenase; Provisional
Probab=37.16 E-value=1.2e+02 Score=27.25 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCC--cceEEeeCCCcchHHHH-HHHH---h
Q psy1367 2 ALKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYG--KKSLCINLKKAKGLSVM-KNLA---N 72 (381)
Q Consensus 2 pL~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrg--K~sv~ldl~~~~g~~~~-~~L~---~ 72 (381)
.|++-+||=.+ ..--|...++.|+..|++||-+.+.... ......+ +.+ ...+.+|+.+++..+.+ .++. .
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35565555554 2223778888899999999988753211 1111111 112 23577899988775533 2322 3
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 85 ~id~li~~a 93 (252)
T PRK07035 85 RLDILVNNA 93 (252)
T ss_pred CCCEEEECC
Confidence 468888764
No 335
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=37.06 E-value=1.1e+02 Score=30.93 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=44.8
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEe
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILE 79 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~ 79 (381)
+++| |+|..+..++.+...+|..+|++|+-+.... ++.|-..+ -|...++..+.+.+++++ ||+-|-
T Consensus 162 ~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~i~~~~--d~~F~~~~-------p~p~~~~~l~~l~~~v~~~~adlgia 231 (443)
T cd03089 162 RPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFCEP--DGTFPNHH-------PDPTDPENLEDLIAAVKENGADLGIA 231 (443)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCEEEEecCCC--CCCCCCCC-------cCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4555 5788899999999999999999999775442 33332211 123334556667777755 887664
No 336
>PRK06101 short chain dehydrogenase; Provisional
Probab=37.01 E-value=57 Score=29.38 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc----CCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ----SDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~----aDv~i~n~ 81 (381)
-|...++.|++.|++|+-+.+.............+-..+..|+.+++.. .++++. -|++|.|.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~~~~~~~~d~~i~~a 79 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGT---KAALSQLPFIPELWIFNA 79 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHH---HHHHHhcccCCCEEEEcC
Confidence 3777889999999999988653210000111112345678899987654 444443 46666653
No 337
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=37.01 E-value=1e+02 Score=31.09 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=45.1
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEe
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILE 79 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~ 79 (381)
+.++| |+|..+..++.++..+|..||++|+.+-... +..|-. ..-|...++-.+.+.++++. ||+-|-
T Consensus 162 i~~lkVvvd~~~Ga~~~~~~~ll~~lg~~vv~~~~~~--d~~Fp~-------~~p~P~~~~~l~~l~~~v~~~~adlGia 232 (445)
T PRK09542 162 IRPLKVAVDAGNGMGGHTVPAVLGGLPITLLPLYFEL--DGTFPN-------HEANPLDPANLVDLQAFVRETGADIGLA 232 (445)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHhCCCEEEEEecCc--CCCCCC-------CCcCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34566 6788899999999999999999999775432 223321 11234445566667777754 787553
No 338
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=36.89 E-value=1.4e+02 Score=23.86 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHhc-CCcEEEE-ccCC-CCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcC
Q psy1367 14 LAPAPFCGMILNEF-GATVIRI-DKHG-AQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQ 90 (381)
Q Consensus 14 ~~agp~~~~~Ladl-GA~Vikv-E~p~-~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lG 90 (381)
...|-.....|.+. +.+|+.| ..+. .+... ...+.+..++..+.-+.+..+ ..++||++.+..++...+.-
T Consensus 9 g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~DvV~~~~~~~~~~~~~ 82 (122)
T smart00859 9 GYVGQELLRLLAEHPDFEVVALAASARSAGKRV-SEAGPHLKGEVVLELEPEDFE-----ELAVDIVFLALPHGVSKEIA 82 (122)
T ss_pred ChHHHHHHHHHhcCCCceEEEEEechhhcCcCH-HHHCcccccccccccccCChh-----hcCCCEEEEcCCcHHHHHHH
Confidence 34455555666664 8999998 4332 11111 112221222222212222222 25899999999988776632
Q ss_pred CCHHHHhhhCCCcEEEEEee
Q psy1367 91 LGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 91 l~~~~l~~~nP~lI~~~isg 110 (381)
. ..++...|+.+++++|+
T Consensus 83 ~--~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 83 P--LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred H--HHHhhhcCCCEEEECCc
Confidence 1 12445688899999885
No 339
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=36.86 E-value=1.1e+02 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
|.|.||+=.+...-.--.+++|.++|.+|+.|-...
T Consensus 269 l~g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~ 304 (398)
T PF00148_consen 269 LGGKRVAIYGDPDRALGLARFLEELGMEVVAVGCDD 304 (398)
T ss_dssp HTT-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred hcCceEEEEcCchhHHHHHHHHHHcCCeEEEEEEcc
Confidence 567787655554334445678889999999986553
No 340
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=36.80 E-value=41 Score=33.88 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEcc
Q psy1367 1 MALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 1 ~pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~ 36 (381)
.||+|+||.-..+..+ ...-.+.|.+.||+|.-.-+
T Consensus 44 ~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~ 80 (425)
T PRK05476 44 KPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASC 80 (425)
T ss_pred CCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeC
Confidence 4999999999998877 46667899999999987664
No 341
>PRK07677 short chain dehydrogenase; Provisional
Probab=36.61 E-value=1.3e+02 Score=27.15 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
-|-..++.|++.|+.|+-+.+.... ......+ +..-..+.+|+.+++..+.+.+-+ ...|+||+|-
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECC
Confidence 3777888899999999988654211 1111111 112235677999887665433322 3578888874
No 342
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=36.45 E-value=40 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEc
Q psy1367 1 MALKGITVLEFAGLAP-APFCGMILNEFGATVIRID 35 (381)
Q Consensus 1 ~pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE 35 (381)
.||+|+||.-..+.-+ ...-.+.|.++||+|.-.-
T Consensus 28 ~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~ 63 (406)
T TIGR00936 28 KPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTS 63 (406)
T ss_pred CCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEc
Confidence 3899999999998776 4566788999999998663
No 343
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=36.44 E-value=49 Score=27.66 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCcEEEEeC--CcccHHHHHHHHHhcCCcEEEE
Q psy1367 2 ALKGITVLEFA--GLAPAPFCGMILNEFGATVIRI 34 (381)
Q Consensus 2 pL~GvrVld~~--~~~agp~~~~~LadlGA~Vikv 34 (381)
-|+|-|||-++ ..++||..-..+...||||+--
T Consensus 3 ~l~gKkviiiGdRDGiPgpAie~c~k~~gaevvfs 37 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPAIEECVKTTGAEVVFS 37 (154)
T ss_pred cccCcEEEEEecCCCCCcHHHHHHHhccCceEEEE
Confidence 37899999998 7899999999999999999863
No 344
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=36.37 E-value=1.5e+02 Score=26.93 Aligned_cols=75 Identities=11% Similarity=-0.062 Sum_probs=43.6
Q ss_pred CCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH-hcCCEEEeC
Q psy1367 4 KGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA-NQSDVILEP 80 (381)
Q Consensus 4 ~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~-~~aDv~i~n 80 (381)
.+-+|+=++ +..-|-...+.|.+.|.+|+-+-+.... ..... .+.+-+.+..|+.++. +.+.+.+ ..+|+||.+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~-~~~~~~~~~~Dl~d~~--~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP-QDPSLQIVRADVTEGS--DKLVEAIGDDSDAVICA 92 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc-cCCceEEEEeeCCCCH--HHHHHHhhcCCCEEEEC
Confidence 455677776 3444666667777889999865432211 00111 1223456778998742 3344555 689999987
Q ss_pred C
Q psy1367 81 F 81 (381)
Q Consensus 81 ~ 81 (381)
.
T Consensus 93 ~ 93 (251)
T PLN00141 93 T 93 (251)
T ss_pred C
Confidence 4
No 345
>PRK06179 short chain dehydrogenase; Provisional
Probab=36.35 E-value=1.1e+02 Score=27.81 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCCCc
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPFRK 83 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~~p 83 (381)
|-..++.|+..|++|+-+-+..... ....+-..+.+|+.+++..+.+.+=+ ...|+||+|...
T Consensus 17 G~~~a~~l~~~g~~V~~~~r~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 17 GRATAEKLARAGYRVFGTSRNPARA----APIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhc----cccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 6677888899999999876542110 01123356888999887644332222 246999998643
No 346
>PRK05993 short chain dehydrogenase; Provisional
Probab=36.25 E-value=1.3e+02 Score=27.63 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=43.6
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH-h----cCCEEEeC
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA-N----QSDVILEP 80 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~-~----~aDv~i~n 80 (381)
+||=.+ ..--|-..++.|++.|++|+-+-+.... .-...+.+=..+.+|+.+++..+.+.+-+ + .-|+||+|
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~--~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~ 83 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEED--VAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNN 83 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEEC
Confidence 444444 2334677788899999999988653211 10111223346788999987765443333 2 46888887
Q ss_pred C
Q psy1367 81 F 81 (381)
Q Consensus 81 ~ 81 (381)
-
T Consensus 84 A 84 (277)
T PRK05993 84 G 84 (277)
T ss_pred C
Confidence 4
No 347
>PRK06475 salicylate hydroxylase; Provisional
Probab=36.21 E-value=69 Score=31.53 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=29.7
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
-+|+=++.+++|-.++..|+..|-+|+-+|+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 368889999999999999999999999999754
No 348
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=36.19 E-value=1.1e+02 Score=29.96 Aligned_cols=35 Identities=9% Similarity=0.286 Sum_probs=23.6
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 268 l~~~~r~ADIVIsAvGkp~~-----i~~d~vK---~GAvVIDVG 303 (364)
T PLN02616 268 PEEITREADIIISAVGQPNM-----VRGSWIK---PGAVVIDVG 303 (364)
T ss_pred HHHHHhhCCEEEEcCCCcCc-----CCHHHcC---CCCEEEecc
Confidence 778899999999865 3332 3445444 777777653
No 349
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=36.18 E-value=95 Score=30.37 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
....|+=++.+++|..++..|+..|-+|+-||+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 45678889999999999999999999999999753
No 350
>PRK06953 short chain dehydrogenase; Provisional
Probab=36.02 E-value=1.1e+02 Score=27.06 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i~n~ 81 (381)
-|-..++.|++.|++|+-+-+........ .+.+-+.+..|+.+++..+.+.+-+. ..|++|+|-
T Consensus 13 iG~~la~~L~~~G~~v~~~~r~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~a 78 (222)
T PRK06953 13 IGREFVRQYRADGWRVIATARDAAALAAL--QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVA 78 (222)
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHH--HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECC
Confidence 36666777888999999986542211111 12233468899999877655433332 367777663
No 351
>PRK10742 putative methyltransferase; Provisional
Probab=36.00 E-value=51 Score=30.61 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=25.5
Q ss_pred Cc--EEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 5 GI--TVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 5 Gv--rVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
|. +|||++-++ |. -+-.||.+||+|+-||.-
T Consensus 87 g~~p~VLD~TAGl-G~-Da~~las~G~~V~~vEr~ 119 (250)
T PRK10742 87 DYLPDVVDATAGL-GR-DAFVLASVGCRVRMLERN 119 (250)
T ss_pred CCCCEEEECCCCc-cH-HHHHHHHcCCEEEEEECC
Confidence 55 899999876 33 578899999999999975
No 352
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.94 E-value=38 Score=29.65 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.1
Q ss_pred HHHHHH-hCCCCHHHHHHHHhCCeeec
Q psy1367 348 TREVLR-HFGYSDANIEELIREDVIEE 373 (381)
Q Consensus 348 t~evL~-elG~s~~~I~~L~~~gvi~~ 373 (381)
-+.+|+ |||+|.++++.|.+.|-|-.
T Consensus 141 l~~Ll~seL~LSrS~lq~lie~g~Irg 167 (203)
T COG4332 141 LDRLLASELGLSRSELQRLIETGQIRG 167 (203)
T ss_pred HHHHHHHHhCcCHHHHHHHHHcCceee
Confidence 466775 59999999999999999864
No 353
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=35.57 E-value=54 Score=33.34 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=29.7
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
++++| |+|..+..++++...+|..||++|+-+..
T Consensus 186 ~~~~kVvvD~~nG~~~~~~~~ll~~LG~~v~~l~~ 220 (465)
T PRK14317 186 LQGVKIVLDLAWGAAVACAPEVFKALGAEVICLHD 220 (465)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEec
Confidence 45677 78999999999999999999999998754
No 354
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=35.52 E-value=2e+02 Score=28.67 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCCcEEEEeC-------CcccHH-HHHHHHHhcCCcEEEEccCCC-CCc-hhhh----c-cCCcceEEeeCCCcchHHHH
Q psy1367 3 LKGITVLEFA-------GLAPAP-FCGMILNEFGATVIRIDKHGA-QPF-VQDT----V-GYGKKSLCINLKKAKGLSVM 67 (381)
Q Consensus 3 L~GvrVld~~-------~~~agp-~~~~~LadlGA~VikvE~p~~-~~~-~~~~----~-nrgK~sv~ldl~~~~g~~~~ 67 (381)
|+|++|.=++ .....+ .-..+|+-+|++|.-+-|++- +.. .... . ..|. ++.+ .+ -+
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~-~i~~--~~-----d~ 256 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGG-SFRQ--VN-----SM 256 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCC-eEEE--Ec-----CH
Confidence 6777887432 111112 224567899999999998862 221 1111 1 1222 2332 11 16
Q ss_pred HHHHhcCCEEEeCCCc-------------------------------cHHHHcCCCHHHHhhhCCC-cEEEE
Q psy1367 68 KNLANQSDVILEPFRK-------------------------------GVMEKLQLGPDVLCKSNPR-LIYAR 107 (381)
Q Consensus 68 ~~L~~~aDv~i~n~~p-------------------------------g~~~~lGl~~~~l~~~nP~-lI~~~ 107 (381)
.+-+++||||...--. .....++++-+-++..+|+ .|+.+
T Consensus 257 ~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MH 328 (395)
T PRK07200 257 EEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMH 328 (395)
T ss_pred HHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEEC
Confidence 6778999999987211 1244567787777777775 77764
No 355
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=35.45 E-value=2.3e+02 Score=27.63 Aligned_cols=98 Identities=9% Similarity=0.116 Sum_probs=55.1
Q ss_pred CCCCcEEEEeCCcc---cHHHHHHHHH-hcCCcEEEEccCCC-CCchh-hh-ccCC-cceEEeeCCCcchHHHHHHHHhc
Q psy1367 2 ALKGITVLEFAGLA---PAPFCGMILN-EFGATVIRIDKHGA-QPFVQ-DT-VGYG-KKSLCINLKKAKGLSVMKNLANQ 73 (381)
Q Consensus 2 pL~GvrVld~~~~~---agp~~~~~La-dlGA~VikvE~p~~-~~~~~-~~-~nrg-K~sv~ldl~~~~g~~~~~~L~~~ 73 (381)
.|+|+||.=++... .......+|+ -+|++|.-+-|++= ++..+ .. .+.| +-.++=| +.+-++.
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d---------~~ea~~~ 226 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ---------LEGNLDK 226 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC---------HHHHHcc
Confidence 48999999888642 1222223445 34999999998762 22121 11 1222 2222222 5677899
Q ss_pred CCEEEeCC------Cc-cH----HHHcCCCHHHHh-hhCCCcEEEEE
Q psy1367 74 SDVILEPF------RK-GV----MEKLQLGPDVLC-KSNPRLIYARL 108 (381)
Q Consensus 74 aDv~i~n~------~p-g~----~~~lGl~~~~l~-~~nP~lI~~~i 108 (381)
||||+... .. .. ...+.++.+-++ ..+|+.|+.+.
T Consensus 227 aDvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc 273 (338)
T PRK08192 227 ADILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP 273 (338)
T ss_pred CCEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence 99999841 11 11 123667767774 36787777653
No 356
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.37 E-value=94 Score=30.29 Aligned_cols=31 Identities=3% Similarity=0.039 Sum_probs=28.4
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.|+=++.+++|..++..|+..|-+|+-+|+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5777889999999999999999999999975
No 357
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=35.33 E-value=84 Score=29.34 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHhcCC-cEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHH-HHhcCCEEEeCCC
Q psy1367 14 LAPAPFCGMILNEFGA-TVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKN-LANQSDVILEPFR 82 (381)
Q Consensus 14 ~~agp~~~~~LadlGA-~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~-L~~~aDv~i~n~~ 82 (381)
..-|....+.|.+.|. +|+-+.++..... + .+..+..+..|+..++..+.+.+ .+...|+||++-.
T Consensus 8 G~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~ 75 (314)
T TIGR02197 8 GFIGSNLVKALNERGITDILVVDNLRDGHK-F--LNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGA 75 (314)
T ss_pred chhhHHHHHHHHHcCCceEEEEecCCCchh-h--hhhhheeeeccCcchhHHHHHHhhccCCCCEEEECcc
Confidence 3458888999999998 7877765432221 1 11233456667776655443332 2247999998864
No 358
>PRK06181 short chain dehydrogenase; Provisional
Probab=35.31 E-value=89 Score=28.36 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhh---hccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQD---TVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPFR 82 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~---~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~~ 82 (381)
|...++.|++.|++||-+.+.... ..... ..+.+...+..|+.+++..+.+.+-+ ...|+||+|--
T Consensus 14 G~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 14 GRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 677788889999999988754211 11111 12233456788999988755444333 25799999853
No 359
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.25 E-value=1.3e+02 Score=28.51 Aligned_cols=50 Identities=6% Similarity=0.164 Sum_probs=29.8
Q ss_pred cCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 48 nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
++|-....++-++++ +.+.+++|||||... +|+. ++.+-+ .|+-|.+++.
T Consensus 180 ~~~ATVt~chs~T~d----l~~~~k~ADIvIsAvGkp~~-----i~~~~v---k~gavVIDvG 230 (282)
T PRK14180 180 NAKATVTTCHRFTTD----LKSHTTKADILIVAVGKPNF-----ITADMV---KEGAVVIDVG 230 (282)
T ss_pred HCCCEEEEEcCCCCC----HHHHhhhcCEEEEccCCcCc-----CCHHHc---CCCcEEEEec
Confidence 444444444444533 777899999999864 3332 344444 4777777753
No 360
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=35.22 E-value=1.9e+02 Score=21.54 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEE
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIR 33 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~Vik 33 (381)
.+++-+|+-++....|-.+.+.|.+.|...|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~ 51 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVV 51 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 47788999999888888888888888543333
No 361
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=34.91 E-value=84 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=27.9
Q ss_pred EEEeCCcccHHHHHHHHHhcC-CcEEEEccCC
Q psy1367 8 VLEFAGLAPAPFCGMILNEFG-ATVIRIDKHG 38 (381)
Q Consensus 8 Vld~~~~~agp~~~~~LadlG-A~VikvE~p~ 38 (381)
|+=++.+++|..++..|+..| -+|+-+|+..
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 566788899999999999999 9999999864
No 362
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=51 Score=29.78 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|-+|||+++. .-|.+.+||.+..+|+-||.-+
T Consensus 72 ~g~~VLEIGtG--sGY~aAvla~l~~~V~siEr~~ 104 (209)
T COG2518 72 PGDRVLEIGTG--SGYQAAVLARLVGRVVSIERIE 104 (209)
T ss_pred CCCeEEEECCC--chHHHHHHHHHhCeEEEEEEcH
Confidence 48899999985 4689999999999999999763
No 363
>KOG0029|consensus
Probab=34.76 E-value=45 Score=34.39 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=31.1
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
--+|+=++.++||=.|++.|-++|.+|+-.|..+
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 3478999999999999999999999999999876
No 364
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=34.69 E-value=2.6e+02 Score=27.49 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCCcEEE-----EeC--CcccHHH-HHHHHHhcCCcEEEEccCCC-CC-chhhh------ccCCcceEEeeCCCcchHHH
Q psy1367 3 LKGITVL-----EFA--GLAPAPF-CGMILNEFGATVIRIDKHGA-QP-FVQDT------VGYGKKSLCINLKKAKGLSV 66 (381)
Q Consensus 3 L~GvrVl-----d~~--~~~agp~-~~~~LadlGA~VikvE~p~~-~~-~~~~~------~nrgK~sv~ldl~~~~g~~~ 66 (381)
|+|++|. |++ .....+. -..+++-+|++|.-+-|++- +. ..... -+-++-.++=|
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d--------- 238 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNS--------- 238 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcC---------
Confidence 6788885 221 1222222 35578889999999988752 22 11111 12223223222
Q ss_pred HHHHHhcCCEEEeC
Q psy1367 67 MKNLANQSDVILEP 80 (381)
Q Consensus 67 ~~~L~~~aDv~i~n 80 (381)
+.+-+++||||...
T Consensus 239 ~~ea~~~aDvvyt~ 252 (357)
T TIGR03316 239 MDEAFKDADIVYPK 252 (357)
T ss_pred HHHHhCCCCEEEEC
Confidence 66778999999987
No 365
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=34.55 E-value=99 Score=32.43 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=47.6
Q ss_pred CCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc------------CCcceEEeeCCCcchHHHHHH
Q psy1367 4 KGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG------------YGKKSLCINLKKAKGLSVMKN 69 (381)
Q Consensus 4 ~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n------------rgK~sv~ldl~~~~g~~~~~~ 69 (381)
+|-+||=++ ...-|-...+.|+..|++|+-+-+.... ......+. .+-..+..|+.+.+. +.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es---I~~ 155 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ---IGP 155 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH---HHH
Confidence 354555555 2345778888899999999876543211 11111110 112457889988654 667
Q ss_pred HHhcCCEEEeCCC
Q psy1367 70 LANQSDVILEPFR 82 (381)
Q Consensus 70 L~~~aDv~i~n~~ 82 (381)
.+..+|+||+|..
T Consensus 156 aLggiDiVVn~AG 168 (576)
T PLN03209 156 ALGNASVVICCIG 168 (576)
T ss_pred HhcCCCEEEEccc
Confidence 8889999999864
No 366
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=34.45 E-value=2.1e+02 Score=29.13 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCc-ccHHHHHHHHH-hcCCcEEEEccCCCCC-chhhhccCCcc-eEEeeCCCcchHHHHHHHHh-cCCEE
Q psy1367 3 LKGITVLEFAGL-APAPFCGMILN-EFGATVIRIDKHGAQP-FVQDTVGYGKK-SLCINLKKAKGLSVMKNLAN-QSDVI 77 (381)
Q Consensus 3 L~GvrVld~~~~-~agp~~~~~La-dlGA~VikvE~p~~~~-~~~~~~nrgK~-sv~ldl~~~~g~~~~~~L~~-~aDv~ 77 (381)
|.|.||.=++.. .+-.+ ++.|. |||.+|+.+-...... .+-.....+.. .+.++- ....+.+..+-+ .+|++
T Consensus 325 L~GkrvaI~~~~~~~~~~-~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~i~i~d--~~~~e~~~~~~~~~pDli 401 (461)
T TIGR01860 325 LQGKKMCIWTGGPRLWHW-TKALEDDLGMQVVAMSSKFGHQEDFEKVIARGKEGTIYIDD--GNELEFFEVLDLIKPDVI 401 (461)
T ss_pred cCCCEEEEECCCchHHHH-HHHHHHhCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEEeC--CCHHHHHHHHHhcCCCEE
Confidence 789998666432 22344 46666 8999999985432211 12111222333 244432 223333333322 58888
Q ss_pred EeCCCccH-HHHcCCC
Q psy1367 78 LEPFRKGV-MEKLQLG 92 (381)
Q Consensus 78 i~n~~pg~-~~~lGl~ 92 (381)
|-|-.... ..++|+.
T Consensus 402 ig~s~~~~~A~klgiP 417 (461)
T TIGR01860 402 FTGPRVGELVKKLHIP 417 (461)
T ss_pred EeCCcchhhHhhcCCC
Confidence 88755433 4445553
No 367
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=34.38 E-value=1.6e+02 Score=26.05 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=45.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHH-H---HhcCCE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKN-L---ANQSDV 76 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~-L---~~~aDv 76 (381)
+++-+|+=.+ ...-|....+.|++.|+.|+-..+.... .........+-..+.+|+.+++..+.+.+ . ....|+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5565666655 3334777888899999988876433211 11111122233456789998876543322 2 234788
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 84 vi~~a 88 (245)
T PRK12936 84 LVNNA 88 (245)
T ss_pred EEECC
Confidence 88873
No 368
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.38 E-value=1.4e+02 Score=28.33 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCCCcEEEEeCCcc-cHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 2 ALKGITVLEFAGLA-PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 2 pL~GvrVld~~~~~-agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+|-+|+=+++.. -|--.+++|...||.|+-+- -++.+ +.+.+++|||||..
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h----------------------s~T~~----l~~~~~~ADIvv~A 214 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH----------------------VFTDD----LKKYTLDADILVVA 214 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe----------------------ccCCC----HHHHHhhCCEEEEc
Confidence 46666666666332 34333455555677776554 22322 67889999999963
Q ss_pred C-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 F-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
. +|+. ++.+ -+.|+-|.+++.
T Consensus 215 vG~p~~-----i~~~---~vk~gavVIDvG 236 (287)
T PRK14176 215 TGVKHL-----IKAD---MVKEGAVIFDVG 236 (287)
T ss_pred cCCccc-----cCHH---HcCCCcEEEEec
Confidence 2 4543 2334 345777777654
No 369
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=34.34 E-value=48 Score=29.99 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHH-HHHHhcCCEEEeCC
Q psy1367 21 GMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVM-KNLANQSDVILEPF 81 (381)
Q Consensus 21 ~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~-~~L~~~aDv~i~n~ 81 (381)
++.|+..|++|+-+.+...... ..+.+.+|+.+++..+.+ .++....|+||+|-
T Consensus 2 a~~l~~~G~~Vv~~~r~~~~~~-------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nA 56 (241)
T PRK12428 2 ARLLRFLGARVIGVDRREPGMT-------LDGFIQADLGDPASIDAAVAALPGRIDALFNIA 56 (241)
T ss_pred hHHHHhCCCEEEEEeCCcchhh-------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECC
Confidence 5788999999998865432110 124578899987765433 33334579999886
No 370
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=34.18 E-value=1.7e+02 Score=28.59 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=48.4
Q ss_pred CCCcEEEEeCC-cccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 3 LKGITVLEFAG-LAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 3 L~GvrVld~~~-~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
=++.||+=++. +.-|....+.|...|-+|+-+.+.... .+.....+.+.+..|+.+.+ .+.+++..+|+||+.-
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~--~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNE--HMSEDMFCHEFHLVDLRVME---NCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccc--ccccccccceEEECCCCCHH---HHHHHHhCCCEEEEcc
Confidence 35677887763 556888888888899999988754211 11111112345667888653 4677778899999864
No 371
>PRK08263 short chain dehydrogenase; Provisional
Probab=34.13 E-value=79 Score=29.09 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
-|-.+.+.|++.|++|+-+.+.... ..........-..+..|+.+++..+.+.+-+ ...|+||+|-
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 85 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNA 85 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3677788889999999988765321 1111111222345678999887754332222 3569998875
No 372
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=34.03 E-value=1.1e+02 Score=30.61 Aligned_cols=83 Identities=14% Similarity=-0.015 Sum_probs=42.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC----CchhhhccCCcceEEeeCCCcchHHHHHHHH--hcCC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ----PFVQDTVGYGKKSLCINLKKAKGLSVMKNLA--NQSD 75 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~----~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~--~~aD 75 (381)
|.| ||.=++ ... .-..+++|.++|++|+.+-.+... ......+..-+- ...|+ ++.+...+++ ..+|
T Consensus 279 l~g-kv~v~g~~~~-~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~~~~-~v~~~---~~~~~~~~~~~~~~pD 352 (416)
T cd01980 279 IKG-RVLVSGYEGN-ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSALGV-EVRYR---KSLEDDIAAVEEYRPD 352 (416)
T ss_pred hCc-eEEEECCCch-hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHhcCC-ccccC---CCHHHHHHHHhhcCCC
Confidence 567 553243 222 233789999999999998766311 112222221111 11222 2322222222 3688
Q ss_pred EEEeCCCcc-HHHHcCC
Q psy1367 76 VILEPFRKG-VMEKLQL 91 (381)
Q Consensus 76 v~i~n~~pg-~~~~lGl 91 (381)
++|-|.... ...|+|+
T Consensus 353 l~Ig~s~~~~~a~~~gi 369 (416)
T cd01980 353 LAIGTTPLVQYAKEKGI 369 (416)
T ss_pred EEEeCChhhHHHHHhCC
Confidence 888885532 3455666
No 373
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=34.01 E-value=37 Score=31.63 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCC-----------cEEEEccCCC-----CC--chhh----hccCCcceEEeeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGA-----------TVIRIDKHGA-----QP--FVQD----TVGYGKKSLCINLK 59 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA-----------~VikvE~p~~-----~~--~~~~----~~nrgK~sv~ldl~ 59 (381)
+|+..|||=++-+-||=-++++|.+.|. +++-|++.|- ++ .+.. +.|.++.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~------- 94 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERE------- 94 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccc-------
Confidence 6889999999999999999999999997 4667776641 11 1111 1222211
Q ss_pred CcchHHHHHHHHh--cCCEEEeCCC-ccHHHHcCCCHHHHhhhC---CCcEEEEEeeCCCCCCCC--CCCchHHHHHHhh
Q psy1367 60 KAKGLSVMKNLAN--QSDVILEPFR-KGVMEKLQLGPDVLCKSN---PRLIYARLSGYGQDGPYS--SMAGHDINYLGLS 131 (381)
Q Consensus 60 ~~~g~~~~~~L~~--~aDv~i~n~~-pg~~~~lGl~~~~l~~~n---P~lI~~~isgfG~~Gp~~--~~~~~d~~~~A~s 131 (381)
..-|.+.++ ++||||=--. ||.. ..|.+++.+ ++-|.-.+| -|-. .- -.+....+.-
T Consensus 95 ----~~~L~eav~~~kptvlIG~S~~~g~f-----t~evv~~Ma~~~~~PIIFaLS-----NPt~~aE~-tpe~a~~~t~ 159 (254)
T cd00762 95 ----SGDLEDAVEAAKPDFLIGVSRVGGAF-----TPEVIRAXAEINERPVIFALS-----NPTSKAEC-TAEEAYTATE 159 (254)
T ss_pred ----cCCHHHHHHhhCCCEEEEeCCCCCCC-----CHHHHHHHhhcCCCCEEEECC-----CcCCcccc-CHHHHHhhcC
Confidence 123888888 8999997555 5543 446666655 888887776 3433 22 2334444444
Q ss_pred h-cccccCCCCC
Q psy1367 132 G-ILSLLGWRNR 142 (381)
Q Consensus 132 G-~~~~~g~~~~ 142 (381)
| ....+|.+..
T Consensus 160 G~ai~AtGspf~ 171 (254)
T cd00762 160 GRAIFASGSPFH 171 (254)
T ss_pred CCEEEEECCCCC
Confidence 5 4555777643
No 374
>PRK07832 short chain dehydrogenase; Provisional
Probab=33.89 E-value=87 Score=28.77 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cch---hhhccCCc-ceEEeeCCCcchHHHHHHHH----hcCCEEEeCCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFV---QDTVGYGK-KSLCINLKKAKGLSVMKNLA----NQSDVILEPFR 82 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~---~~~~nrgK-~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~~ 82 (381)
|-..++.|++.|++|+-+.+.... ... ....+..+ ..+.+|+.+++..+.+.+-+ ...|+||+|-.
T Consensus 13 G~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag 87 (272)
T PRK07832 13 GRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAG 87 (272)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 566778899999999988653211 001 11112222 23578999987755433333 34799998864
No 375
>PRK12747 short chain dehydrogenase; Provisional
Probab=33.75 E-value=1.9e+02 Score=26.00 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc---cCCcceEEeeCCCcchHHHH-HHHHh---
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV---GYGKKSLCINLKKAKGLSVM-KNLAN--- 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~---nrgK~sv~ldl~~~~g~~~~-~~L~~--- 72 (381)
|+|-+||=.+ ..--|-..++.|++.|++|+-+-..... ......+ +..-..+..|+.++++.+.+ .++.+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 3454554444 2223788899999999999876322111 1111111 11123466799888765533 33322
Q ss_pred ------cCCEEEeCC
Q psy1367 73 ------QSDVILEPF 81 (381)
Q Consensus 73 ------~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 82 ~~~g~~~id~lv~~A 96 (252)
T PRK12747 82 NRTGSTKFDILINNA 96 (252)
T ss_pred hhcCCCCCCEEEECC
Confidence 578888774
No 376
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=33.66 E-value=1.1e+02 Score=31.13 Aligned_cols=69 Identities=25% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCcEE-EEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH--hcCCEEE
Q psy1367 4 KGITV-LEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA--NQSDVIL 78 (381)
Q Consensus 4 ~GvrV-ld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~--~~aDv~i 78 (381)
.++|| +|..+..++.+...+|..||++ |+-++.-..++..|... +. -|...++..+.+.+++ ..||+-+
T Consensus 185 ~~~kVvvD~~~G~~~~~~~~il~~LG~~~v~~~~~~~~~d~~F~~~-~~-----p~p~~~~~l~~l~~~v~~~~ad~Gi 257 (487)
T cd05799 185 KDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDPDFPTV-KF-----PNPEEPGALDLAIELAKKVGADLIL 257 (487)
T ss_pred CCCcEEEeCCCCccHHHHHHHHHHcCCCCcEEeeeccCCCcCCCCC-CC-----CCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 46664 5999999999999999999999 77665433344444321 00 1222345555566666 3477655
No 377
>PRK08267 short chain dehydrogenase; Provisional
Probab=33.64 E-value=77 Score=28.76 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-cCCcceEEeeCCCcchHHHH-HHHH----hcCCEEEeCCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-GYGKKSLCINLKKAKGLSVM-KNLA----NQSDVILEPFR 82 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-nrgK~sv~ldl~~~~g~~~~-~~L~----~~aDv~i~n~~ 82 (381)
|-..++.|++.|++|+-+.+.... ....... +..-..+.+|+.+++..+.+ .+.. ...|+||+|-.
T Consensus 14 G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 14 GRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAG 86 (260)
T ss_pred HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 666778888999999988653211 1111111 22334578899987765433 2232 23599998753
No 378
>PRK07578 short chain dehydrogenase; Provisional
Probab=33.53 E-value=1.1e+02 Score=26.38 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
|-...+.|++. ++|+-+.+.. ..+.+|+.+++..+.+.+-+...|+||+|-
T Consensus 13 G~~la~~l~~~-~~vi~~~r~~-------------~~~~~D~~~~~~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 13 GRAVVAELSKR-HEVITAGRSS-------------GDVQVDITDPASIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred HHHHHHHHHhc-CcEEEEecCC-------------CceEecCCChHHHHHHHHhcCCCCEEEECC
Confidence 56667777777 9999876542 147889999877555444445677777764
No 379
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=33.52 E-value=1.8e+02 Score=30.11 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCc-------hhhhccCCcceEEeeCCCcchHHHHHHHHhc--
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPF-------VQDTVGYGKKSLCINLKKAKGLSVMKNLANQ-- 73 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~-------~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~-- 73 (381)
|.|.||.=.+..--.--.+++|.++|++++.|-...+... ......-|+.....+= .+...+++++.+
T Consensus 361 l~GKrvaI~gdpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~---~Dl~~l~~~l~~~~ 437 (515)
T TIGR01286 361 LHGKRFAIYGDPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIG---KDLWHLRSLVFTEP 437 (515)
T ss_pred hcCceEEEECCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeC---CCHHHHHHHHhhcC
Confidence 6788887776432233456778899999998876543211 1111122433333321 244556666643
Q ss_pred CCEEEeCCCccHHH
Q psy1367 74 SDVILEPFRKGVME 87 (381)
Q Consensus 74 aDv~i~n~~pg~~~ 87 (381)
.|++|-|-....++
T Consensus 438 ~DlliG~s~~k~~a 451 (515)
T TIGR01286 438 VDFLIGNSYGKYIQ 451 (515)
T ss_pred CCEEEECchHHHHH
Confidence 88888776554443
No 380
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=33.51 E-value=70 Score=29.82 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.|+|.||+=-+-.-.|-+++++|.++||.||-|-..
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 588999999888778999999999999999977553
No 381
>PRK14030 glutamate dehydrogenase; Provisional
Probab=33.46 E-value=61 Score=32.83 Aligned_cols=36 Identities=28% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.|+|.||+=-+-.-.|-++++.|.++||.||-|-..
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~ 260 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGP 260 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 588999998887778999999999999999997543
No 382
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=33.38 E-value=90 Score=28.15 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHH-HHHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVM-KNLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~-~~L~---~~aDv~i~n~ 81 (381)
-|-...+.|++.|++|+-+.+.... .......+.+=..+..|+.+++..+.+ .++. ...|+||+|-
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3667778888999999988654211 111112232234578899998775433 3332 3589999874
No 383
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=33.22 E-value=51 Score=32.39 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=28.3
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.|+=++-..||..|+..||..|.+|+-||+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5777888999999999999999999999975
No 384
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=33.11 E-value=3.7e+02 Score=24.24 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=62.9
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC--C-----Cchh-----------------hhccCCcceEEeeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--Q-----PFVQ-----------------DTVGYGKKSLCINL 58 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~--~-----~~~~-----------------~~~nrgK~sv~ldl 58 (381)
|..-||+=++-.--|......|+-+|-.-|.+=.++. . ..+| ...|..-+....+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 5567888888777789999999999997776654431 0 1111 11222222222222
Q ss_pred CCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEeeC
Q psy1367 59 KKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGY 111 (381)
Q Consensus 59 ~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isgf 111 (381)
+- ..+.+.+++.++|+||.....-.. +.=+ .+..++.+-.+|++.+.|+
T Consensus 99 ~i--~~~~~~~~~~~~DvVi~~~d~~~~-r~~l-~~~~~~~~ip~i~~g~~g~ 147 (228)
T cd00757 99 RL--DAENAEELIAGYDLVLDCTDNFAT-RYLI-NDACVKLGKPLVSGAVLGF 147 (228)
T ss_pred ee--CHHHHHHHHhCCCEEEEcCCCHHH-HHHH-HHHHHHcCCCEEEEEeccC
Confidence 21 134577889999999988653322 2212 2345566778888877763
No 385
>PLN02271 serine hydroxymethyltransferase
Probab=32.83 E-value=30 Score=36.13 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=46.8
Q ss_pred chhhhccCCcceEEeeCCCcchHHHHH-----HHHhcCCEEEeCCCccH-HHHcCCCHHHHhh----hCCCcEEEEEeeC
Q psy1367 42 FVQDTVGYGKKSLCINLKKAKGLSVMK-----NLANQSDVILEPFRKGV-MEKLQLGPDVLCK----SNPRLIYARLSGY 111 (381)
Q Consensus 42 ~~~~~~nrgK~sv~ldl~~~~g~~~~~-----~L~~~aDv~i~n~~pg~-~~~lGl~~~~l~~----~nP~lI~~~isgf 111 (381)
.++..++.|-+.+++|+.+....-... +.+..+-+.++..+=+. -+.--|||++|.+ .+|+||+|.-+-|
T Consensus 230 V~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Say 309 (586)
T PLN02271 230 VYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSY 309 (586)
T ss_pred HHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhc
Confidence 456678999999999998775544332 33455566655543222 2334589998875 4899999955555
Q ss_pred C
Q psy1367 112 G 112 (381)
Q Consensus 112 G 112 (381)
-
T Consensus 310 p 310 (586)
T PLN02271 310 P 310 (586)
T ss_pred c
Confidence 4
No 386
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=32.80 E-value=97 Score=33.01 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|.+|+=++.+.||=.|+..|+.+|.+|+-+|+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 58899999999999999999999999999999754
No 387
>PLN02489 homocysteine S-methyltransferase
Probab=32.79 E-value=1.2e+02 Score=29.50 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=29.3
Q ss_pred eEEeeCCCcchHHHHHH--HHhcCCEEEeCCC---ccHHHHcCCCHHH
Q psy1367 53 SLCINLKKAKGLSVMKN--LANQSDVILEPFR---KGVMEKLQLGPDV 95 (381)
Q Consensus 53 sv~ldl~~~~g~~~~~~--L~~~aDv~i~n~~---pg~~~~lGl~~~~ 95 (381)
|-.+.+.+|+-...+++ |-+.|||+.+|-= +..+.+.|++.++
T Consensus 46 s~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~ 93 (335)
T PLN02489 46 SAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREE 93 (335)
T ss_pred chhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHH
Confidence 33456778877666666 6688999988863 4456777887544
No 388
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.48 E-value=1.6e+02 Score=27.92 Aligned_cols=34 Identities=12% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEE
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARL 108 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~i 108 (381)
+.+++++|||||... +|+. ++.+-+ .|+-|.+++
T Consensus 195 l~~~~~~ADIvIsAvGkp~~-----i~~~~i---k~gavVIDv 229 (278)
T PRK14172 195 LKEVCKKADILVVAIGRPKF-----IDEEYV---KEGAIVIDV 229 (278)
T ss_pred HHHHHhhCCEEEEcCCCcCc-----cCHHHc---CCCcEEEEe
Confidence 788999999999865 3333 444544 477887776
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=32.48 E-value=1.9e+02 Score=27.40 Aligned_cols=91 Identities=21% Similarity=0.103 Sum_probs=51.7
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC----
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF---- 81 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~---- 81 (381)
.++.=++.-.---+..+.|..+|++|.-.--+. .-| ...|-+.+.. ..+.+++|||+|.-.
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~---~~~--~~~g~~~~~~----------~~~~~~~ad~ii~~~p~~~ 67 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ---LDH--GFTGATKSSS----------LEEALSDVDVIILPVPGTN 67 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc---ccc--ccCCceeecc----------HHHHhccCCEEEECCcccc
Confidence 344444433334567889999999999822111 000 1112221111 245688999999763
Q ss_pred ------CccHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 82 ------RKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 82 ------~pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
.|-.-.+++++.+.+....|..+.+ .|++.
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~--~G~~~ 103 (296)
T PRK08306 68 DEGNVDTVFSNEKLVLTEELLELTPEHCTIF--SGIAN 103 (296)
T ss_pred CCceeeccccccCCcchHHHHHhcCCCCEEE--EecCC
Confidence 3334456777888888888775333 46654
No 390
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=32.29 E-value=49 Score=33.13 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=29.4
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.-||=++...||..|+..||..|.+|+-||+-.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 457788889999999999999999999999753
No 391
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=32.27 E-value=52 Score=32.98 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=29.4
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEcc
Q psy1367 1 MALKGITVLEFAGLAP-APFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 1 ~pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE~ 36 (381)
.||+|+||.-.-+.-+ ...-...|.++||+|.-.-+
T Consensus 32 ~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~ 68 (413)
T cd00401 32 KPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSC 68 (413)
T ss_pred CCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcC
Confidence 3999999999988765 45667889999999976653
No 392
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=32.27 E-value=71 Score=31.88 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA 39 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~ 39 (381)
.|+|.||.=-+-.-.|-++++.|.++||+||-+-...+
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 48999999988888899999999999999999986554
No 393
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=32.27 E-value=1e+02 Score=30.33 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCchh----hhccCCcceEEee-CCCc---------chHHHHHHHHhcCCEEEeCCCc
Q psy1367 18 PFCGMILNEFGATVIRIDKHGAQPFVQ----DTVGYGKKSLCIN-LKKA---------KGLSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 18 p~~~~~LadlGA~VikvE~p~~~~~~~----~~~nrgK~sv~ld-l~~~---------~g~~~~~~L~~~aDv~i~n~~p 83 (381)
+-=-.+|..+||+||.+++..+....+ ..+......+-+| ..++ -|.|+++++....|.||-..--
T Consensus 147 ~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGt 226 (368)
T PLN02556 147 LERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGS 226 (368)
T ss_pred HHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc
Confidence 444578889999999998643211111 0010111122222 2233 2445666654567988887765
Q ss_pred cHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 84 GVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 84 g~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
|-.-. |+ +.-|++.+|++-.+.+..+|.
T Consensus 227 GGt~a-Gv-~~~lk~~~p~~kVigVep~~~ 254 (368)
T PLN02556 227 GGTVS-GV-GKYLKSKNPNVKIYGVEPAES 254 (368)
T ss_pred chHHH-HH-HHHHHHhCCCCEEEEEeeCCC
Confidence 44322 33 256777788777777777765
No 394
>PRK06484 short chain dehydrogenase; Validated
Probab=32.27 E-value=1.3e+02 Score=30.65 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHH-HHHHH---hcCCE
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSV-MKNLA---NQSDV 76 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~-~~~L~---~~aDv 76 (381)
+.|-++|=.+ ..--|-..++.|++.|++|+-+-+.... ...-...+..-..+.+|+.+++..+. +.++. ..-|+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 346 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV 346 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3455555444 1222677889999999999988653211 11111111112347889999887653 33443 34799
Q ss_pred EEeCC
Q psy1367 77 ILEPF 81 (381)
Q Consensus 77 ~i~n~ 81 (381)
||+|-
T Consensus 347 li~nA 351 (520)
T PRK06484 347 LVNNA 351 (520)
T ss_pred EEECC
Confidence 99874
No 395
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.24 E-value=1.7e+02 Score=29.24 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhh-----ccCCcceEEeeCCCcchHHHHHHHHhc--CC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDT-----VGYGKKSLCINLKKAKGLSVMKNLANQ--SD 75 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~-----~nrgK~sv~ldl~~~~g~~~~~~L~~~--aD 75 (381)
|.|.||.=.+...-.--.+++|.++|.+|+.|-........... ...+.....++..+ .+.+.+++++ .|
T Consensus 297 l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d---~~el~~~i~~~~pd 373 (428)
T cd01965 297 LGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGD---LWDLESLAKEEPVD 373 (428)
T ss_pred hcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCC---HHHHHHHhhccCCC
Confidence 67888876664332334578899999999988765432211111 11222233333333 3446667766 99
Q ss_pred EEEeCCCccHH-HHcCC
Q psy1367 76 VILEPFRKGVM-EKLQL 91 (381)
Q Consensus 76 v~i~n~~pg~~-~~lGl 91 (381)
++|-|.....+ .++|+
T Consensus 374 liig~~~~~~~a~~~~i 390 (428)
T cd01965 374 LLIGNSHGRYLARDLGI 390 (428)
T ss_pred EEEECchhHHHHHhcCC
Confidence 99988655444 34444
No 396
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=32.15 E-value=1.5e+02 Score=28.86 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|+|-+|-=++.+.-|.-.++.|.+.|.+|+-..++...+ .-.....|= .. . -..+++++||||+-..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s-~~~A~~~G~---~~--~------s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS-WKKAEADGF---EV--L------TVAEAAKWADVIMILL 81 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh-HHHHHHCCC---ee--C------CHHHHHhcCCEEEEcC
Confidence 3677777666666667777888999999998765553211 111111121 11 0 1567899999999999
Q ss_pred CccHHHHcCCCHHHHh-hhCCCcEEEEEeeCCC
Q psy1367 82 RKGVMEKLQLGPDVLC-KSNPRLIYARLSGYGQ 113 (381)
Q Consensus 82 ~pg~~~~lGl~~~~l~-~~nP~lI~~~isgfG~ 113 (381)
+|.....+ -.+++. ...|+-+.+-..||+-
T Consensus 82 Pd~~~~~V--~~~~I~~~Lk~g~iL~~a~G~~i 112 (330)
T PRK05479 82 PDEVQAEV--YEEEIEPNLKEGAALAFAHGFNI 112 (330)
T ss_pred CHHHHHHH--HHHHHHhcCCCCCEEEECCCCCh
Confidence 98776432 113343 4556655565666653
No 397
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=32.09 E-value=3e+02 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p 37 (381)
|.|.||.=++ ...+-.++..+|.|+|.+|+.+-.+
T Consensus 315 l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~ 350 (443)
T TIGR01862 315 LQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYE 350 (443)
T ss_pred hcCCeEEEECCchhHHHHHHHHHHHCCCEEEEeccc
Confidence 6788886543 2223345455999999999999443
No 398
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.08 E-value=1.6e+02 Score=28.02 Aligned_cols=35 Identities=6% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||..- +|+. +..+-++ |+-|.+++.
T Consensus 194 l~~~~~~ADIvV~AvG~p~~-----i~~~~ik---~GavVIDvG 229 (287)
T PRK14181 194 LTEILKTADIIIAAIGVPLF-----IKEEMIA---EKAVIVDVG 229 (287)
T ss_pred HHHHHhhCCEEEEccCCcCc-----cCHHHcC---CCCEEEEec
Confidence 788899999999754 3332 4445544 677777754
No 399
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=32.06 E-value=47 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.2
Q ss_pred HHHHH-HhCCCCHHHHHHHHh
Q psy1367 348 TREVL-RHFGYSDANIEELIR 367 (381)
Q Consensus 348 t~evL-~elG~s~~~I~~L~~ 367 (381)
-+..| ++||+|+++|++|++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~ 65 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRE 65 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 35667 558999999999986
No 400
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=32.05 E-value=97 Score=25.53 Aligned_cols=90 Identities=12% Similarity=0.227 Sum_probs=52.1
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhh--hccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCc
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQD--TVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~--~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~p 83 (381)
+||-=++.+-.|..-++.|...|-+|.-|......+.-.. .++.. -..| +.++++.||+++-..+-
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~---~~~~---------~~~~~~~aDlv~iavpD 78 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAG---AILD---------LEEILRDADLVFIAVPD 78 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----------------TTGGGCC-SEEEE-S-C
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccc---cccc---------cccccccCCEEEEEech
Confidence 4555566666688889999999999998886532111111 11211 1222 34567899999998888
Q ss_pred cHHHHcCCCHHHHhhh---CCCcEEEEEee
Q psy1367 84 GVMEKLQLGPDVLCKS---NPRLIYARLSG 110 (381)
Q Consensus 84 g~~~~lGl~~~~l~~~---nP~lI~~~isg 110 (381)
..++.. .++|... .|+-|+++.||
T Consensus 79 daI~~v---a~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 79 DAIAEV---AEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp CHHHHH---HHHHHCC--S-TT-EEEES-S
T ss_pred HHHHHH---HHHHHHhccCCCCcEEEECCC
Confidence 887764 4556553 57888889887
No 401
>PRK06914 short chain dehydrogenase; Provisional
Probab=31.93 E-value=1.6e+02 Score=27.02 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=46.0
Q ss_pred CcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchh---hhc--cCCcceEEeeCCCcchHHHHHHHH---hcC
Q psy1367 5 GITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQ---DTV--GYGKKSLCINLKKAKGLSVMKNLA---NQS 74 (381)
Q Consensus 5 GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~---~~~--nrgK~sv~ldl~~~~g~~~~~~L~---~~a 74 (381)
+-+||=.+ +..-|....+.|++.|++|+-+-+.... .... ... +..-..+.+|+.+++..+.+.++. ...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 43444444 3334777778889999999988654211 1111 111 222345678999988766555544 346
Q ss_pred CEEEeCC
Q psy1367 75 DVILEPF 81 (381)
Q Consensus 75 Dv~i~n~ 81 (381)
|+||+|.
T Consensus 83 d~vv~~a 89 (280)
T PRK06914 83 DLLVNNA 89 (280)
T ss_pred eEEEECC
Confidence 9999884
No 402
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=31.80 E-value=3e+02 Score=24.70 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=62.1
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC--C-----Cc----------------hhhhccCCcceEEeeCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--Q-----PF----------------VQDTVGYGKKSLCINLK 59 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~--~-----~~----------------~~~~~nrgK~sv~ldl~ 59 (381)
|..-+|+=++-.--|....+.|+..|..=|.+=..+. . .. ....+|.+-+....+-+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 5667888888777789999999999998555443321 0 00 11223443333333322
Q ss_pred CcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhh-CCCcEEEE-EeeCCC
Q psy1367 60 KAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKS-NPRLIYAR-LSGYGQ 113 (381)
Q Consensus 60 ~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~-nP~lI~~~-isgfG~ 113 (381)
-.+ +-+.++++++|+||+....-. .|.-+ .+.+.+. +..+|+++ ..|||+
T Consensus 106 i~~--~~~~~~~~~~DvVI~a~D~~~-~r~~l-~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 106 IDE--DNIEELFKDCDIVVEAFDNAE-TKAML-VETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred cCH--HHHHHHHcCCCEEEECCCCHH-HHHHH-HHHHHHhCCCCEEEeehhhccCC
Confidence 111 345678899999997743222 23222 2556666 88888874 334554
No 403
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=31.78 E-value=74 Score=29.24 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
..|-+|||++.+. |- .+..++.+|+. |+-|+.-..- ...-.....+.-...+++...+. ..|+++.|
T Consensus 118 ~~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEEc
Confidence 4688999999875 64 45677889997 8888754210 00001111111111122222111 68999999
Q ss_pred CCccHHHHcCCCHHHHhhhCCC
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPR 102 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~ 102 (381)
.....+.++ -.+-.+.+.|+
T Consensus 187 i~~~~~~~l--~~~~~~~Lkpg 206 (250)
T PRK00517 187 ILANPLLEL--APDLARLLKPG 206 (250)
T ss_pred CcHHHHHHH--HHHHHHhcCCC
Confidence 876665543 12333445553
No 404
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=31.72 E-value=1.1e+02 Score=27.54 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc---CCcceEEeeCCCcchHHH-HHHHH---hcCCEEEeCCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG---YGKKSLCINLKKAKGLSV-MKNLA---NQSDVILEPFR 82 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n---rgK~sv~ldl~~~~g~~~-~~~L~---~~aDv~i~n~~ 82 (381)
|-...+.|+..|++|+-+.+.... ......++ ..=..+.+|+.+++..+. +.++. ...|+||+|..
T Consensus 13 G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag 86 (254)
T TIGR02415 13 GKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAG 86 (254)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666777889999999988764321 11111121 122457789999876443 33332 34699998753
No 405
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=31.71 E-value=35 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=21.1
Q ss_pred HhhcCHHHHHHHhhcCCCeEeeccC
Q psy1367 272 FKEKTQAEWCEIFDNTDACVTPVLS 296 (381)
Q Consensus 272 ~~~~t~~ew~~~l~~a~vp~~~V~~ 296 (381)
+.+.+-+|+.+.|.+.|++.+||-+
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITD 27 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCc
Confidence 4567888999999999999999954
No 406
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=31.58 E-value=1.2e+02 Score=30.39 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=28.6
Q ss_pred CCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 4 KGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 4 ~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
+++| |+|..+..++.++..+|..||++|+-+..
T Consensus 161 ~~~kvvvD~~nGa~~~~~~~ll~~Lg~~v~~ln~ 194 (430)
T PRK14319 161 SGIKIVVDVANGATYELNPYILEYFGAKVEVVNN 194 (430)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEECC
Confidence 3455 78999999999999999999999998864
No 407
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.58 E-value=1.4e+02 Score=28.55 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=52.5
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhcc-CCcc--eEEe--eCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVG-YGKK--SLCI--NLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~n-rgK~--sv~l--dl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
.||.=++.+.-|-..+..|++.|-+|+-+.+.......+.... .++. ...+ +.+..+ -+.+.++.+|+||.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~---~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTA---DPEEALAGADFAVVA 81 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeC---CHHHHHcCCCEEEEE
Confidence 4555566555566667788899999998887421100011100 0110 0000 011111 144567899999999
Q ss_pred CCccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 81 FRKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.++..++. .+....|..++++++
T Consensus 82 v~~~~~~~------v~~~l~~~~~vi~~~ 104 (328)
T PRK14618 82 VPSKALRE------TLAGLPRALGYVSCA 104 (328)
T ss_pred CchHHHHH------HHHhcCcCCEEEEEe
Confidence 88876533 345566777766554
No 408
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.47 E-value=95 Score=27.82 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhh----hccCCcceEEeeCCCcchHHH-HHHHHhcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQD----TVGYGKKSLCINLKKAKGLSV-MKNLANQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~----~~nrgK~sv~ldl~~~~g~~~-~~~L~~~aDv~i~n~ 81 (381)
|-...+.|++.|++||-+-+.... ..... ..+.+-..+..|+.+++..+. +.++....|+||.|-
T Consensus 14 G~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 14 ARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEECC
Confidence 666777888899999988654321 11111 111223467789999877543 333444569999874
No 409
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=31.35 E-value=82 Score=28.64 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc--CCcceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG--YGKKSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n--rgK~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
|--.++.|++.|++|+-+.+.... ......++ .+...+.+|+.+++..+.+.+-+ ..-|+||+|.
T Consensus 13 G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 13 GFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 667788899999999988643211 11111111 12346788999987755433322 3578998874
No 410
>PRK07024 short chain dehydrogenase; Provisional
Probab=31.26 E-value=88 Score=28.41 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhcc-C-CcceEEeeCCCcchHHHHH-HHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVG-Y-GKKSLCINLKKAKGLSVMK-NLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~n-r-gK~sv~ldl~~~~g~~~~~-~L~---~~aDv~i~n~ 81 (381)
-|-...+.|++.|++|+-+.+.... ......+. . +=..+.+|+.+++..+.+. ++. ...|+||+|-
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~a 86 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANA 86 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3777888899999999988754211 11111111 1 1235778999877644332 222 2369999884
No 411
>PF05874 PBAN: Pheromone biosynthesis activating neuropeptide (PBAN); InterPro: IPR008730 This family consists of several moth pheromone biosynthesis activating neuropeptide (PBAN) sequences. Female moths produce and release species specific sex pheromones to attract males for mating. Pheromone biosynthesis is hormonally regulated by the Pheromone Biosynthesis Activating Neuropeptide (PBAN) which is biosynthesised in the subesophageal ganglion (SOG) [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0042811 pheromone biosynthetic process
Probab=31.25 E-value=27 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=26.9
Q ss_pred hhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEE
Q psy1367 43 VQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVIL 78 (381)
Q Consensus 43 ~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i 78 (381)
.|.----||||+.+ ..++.|..|.+|+..||.+=
T Consensus 41 lWFGPRLGKRsl~~--s~ednrq~f~rllEaaDalk 74 (195)
T PF05874_consen 41 LWFGPRLGKRSLRL--STEDNRQAFFRLLEAADALK 74 (195)
T ss_pred eeeccccccccccc--cccccHHHHHHHHHHhhcch
Confidence 44445679998876 46778999999999999865
No 412
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=31.18 E-value=1.2e+02 Score=26.34 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=34.9
Q ss_pred EEeeCCCcchHHHHHHHHhcCCE-EEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEee
Q psy1367 54 LCINLKKAKGLSVMKNLANQSDV-ILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSG 110 (381)
Q Consensus 54 v~ldl~~~~g~~~~~~L~~~aDv-~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isg 110 (381)
|.++..+.+ +....+-..+|+ .++||.|..+++. -+.|++.+|++. +..||
T Consensus 83 I~VEv~~~e--e~~ea~~~g~d~I~lD~~~~~~~~~~---v~~l~~~~~~v~-ie~SG 134 (169)
T PF01729_consen 83 IEVEVENLE--EAEEALEAGADIIMLDNMSPEDLKEA---VEELRELNPRVK-IEASG 134 (169)
T ss_dssp EEEEESSHH--HHHHHHHTT-SEEEEES-CHHHHHHH---HHHHHHHTTTSE-EEEES
T ss_pred EEEEcCCHH--HHHHHHHhCCCEEEecCcCHHHHHHH---HHHHhhcCCcEE-EEEEC
Confidence 888887753 334445577895 7899999998884 577889999944 45543
No 413
>PRK12746 short chain dehydrogenase; Provisional
Probab=31.16 E-value=2.1e+02 Score=25.66 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEE-ccCCCC-Cchhhhc-cCC-c-ceEEeeCCCcchHHHHHHHHh----
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRI-DKHGAQ-PFVQDTV-GYG-K-KSLCINLKKAKGLSVMKNLAN---- 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~Vikv-E~p~~~-~~~~~~~-nrg-K-~sv~ldl~~~~g~~~~~~L~~---- 72 (381)
|++-+|+=.+ ...-|-...+.|++.|++|+-+ .+.... ......+ ..+ + .-+.+|+.+++..+.+.+-+.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 3455555444 3344778888899999999765 222111 1111111 112 2 246689999887655444332
Q ss_pred ------cCCEEEeCC
Q psy1367 73 ------QSDVILEPF 81 (381)
Q Consensus 73 ------~aDv~i~n~ 81 (381)
..|++|+|.
T Consensus 84 ~~~~~~~id~vi~~a 98 (254)
T PRK12746 84 IRVGTSEIDILVNNA 98 (254)
T ss_pred cccCCCCccEEEECC
Confidence 468888764
No 414
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=31.11 E-value=1e+02 Score=27.94 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc-----cCCcceEEeeCCCcchHHHHH-HHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV-----GYGKKSLCINLKKAKGLSVMK-NLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~-----nrgK~sv~ldl~~~~g~~~~~-~L~---~~aDv~i~n~ 81 (381)
-|-..++.|++.|++||-+.+.... ......+ +.....+.+|+.+++..+.+. ++. ...|++|+|-
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~~a 89 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNA 89 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3777888999999999998754211 1111111 122456778999876644322 222 3467888764
No 415
>PLN00203 glutamyl-tRNA reductase
Probab=31.09 E-value=1.5e+02 Score=30.79 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=55.9
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhh-hccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQD-TVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~-~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
|.+-+|+=++.+-.|-...+.|...|++ |+-+.+.......+. .++ +......++ +.+.+.+..+||||..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~-g~~i~~~~~------~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP-DVEIIYKPL------DEMLACAAEADVVFTS 336 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC-CCceEeecH------hhHHHHHhcCCEEEEc
Confidence 7889999999888888888999999985 555544321111121 121 221112222 2356778899999987
Q ss_pred CCccHHHHcCCCHHHHhhh-------CCCcEEEEEe
Q psy1367 81 FRKGVMEKLQLGPDVLCKS-------NPRLIYARLS 109 (381)
Q Consensus 81 ~~pg~~~~lGl~~~~l~~~-------nP~lI~~~is 109 (381)
-.-... =+..+.+++. +..+++++|+
T Consensus 337 T~s~~p---vI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 337 TSSETP---LFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred cCCCCC---eeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 421111 1344555443 1236777776
No 416
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=30.91 E-value=1.2e+02 Score=30.01 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=29.7
Q ss_pred cEEEEeCCcccHHHHHHHHHhcC-CcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFG-ATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlG-A~VikvE~p~ 38 (381)
++|+=++..++|-.++..|+..| -+|+-+|+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 57899999999999999999998 5999999753
No 417
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=30.84 E-value=1e+02 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=30.0
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
..|+=++.+++|-.++..|+..|-+|+-||+-.
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 468889999999999999999999999999764
No 418
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=30.66 E-value=1e+02 Score=30.96 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccC-CcceEEeeCCCcchHHHHHHHH---hcCCEEE
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGY-GKKSLCINLKKAKGLSVMKNLA---NQSDVIL 78 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nr-gK~sv~ldl~~~~g~~~~~~L~---~~aDv~i 78 (381)
.+-+|||+..+. |.++ ..||..+.+|+-||.-..- ...-..... |...+.+ -..+-.+.+.++. ...|++|
T Consensus 292 ~~~~vLDl~cG~-G~~s-l~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~--~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 292 GEELVVDAYCGV-GTFT-LPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEF--LAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCEEEEcCCCc-CHHH-HHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEE--EeCCHHHHHHHHHhcCCCCCEEE
Confidence 357999999874 6664 5588889999999965321 000011111 1112222 2222233444443 2479988
Q ss_pred eCCCccHHHHcCCCHHHH---hhhCC-CcEEEEEe
Q psy1367 79 EPFRKGVMEKLQLGPDVL---CKSNP-RLIYARLS 109 (381)
Q Consensus 79 ~n~~pg~~~~lGl~~~~l---~~~nP-~lI~~~is 109 (381)
-+-+ |-|++.+.+ .+..| ++||+|..
T Consensus 368 ~dPP-----r~G~~~~~l~~l~~l~~~~ivyvsc~ 397 (431)
T TIGR00479 368 LDPP-----RKGCAAEVLRTIIELKPERIVYVSCN 397 (431)
T ss_pred ECcC-----CCCCCHHHHHHHHhcCCCEEEEEcCC
Confidence 7643 235554443 34555 67788643
No 419
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=30.63 E-value=58 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCCCcCHHHHHHhCCCCHHHHHHHHhC
Q psy1367 342 PAPGVHTREVLRHFGYSDANIEELIRE 368 (381)
Q Consensus 342 P~lGeht~evL~elG~s~~~I~~L~~~ 368 (381)
-.+|.|=.++.++||++.++|+..+.+
T Consensus 12 ~~LG~dW~~LA~eLg~s~~dI~~i~~e 38 (84)
T cd08803 12 DHLGLSWTELARELNFSVDEINQIRVE 38 (84)
T ss_pred HHhhccHHHHHHHcCCCHHHHHHHHHh
Confidence 457888888999999999999998763
No 420
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.44 E-value=1.5e+02 Score=28.10 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=46.0
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
||+=++ ++.-|....+.|.+.|-+|+-+-+...... +. ...|-+.+..|+.+++. +.+.++.+|+||+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~-~l-~~~~v~~v~~Dl~d~~~---l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS-FL-KEWGAELVYGDLSLPET---LPPSFKGVTAIIDAS 72 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh-hH-hhcCCEEEECCCCCHHH---HHHHHCCCCEEEECC
Confidence 444444 455577777888889999987765421111 11 12355677889988754 677888999999864
No 421
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=30.39 E-value=2.7e+02 Score=29.63 Aligned_cols=73 Identities=11% Similarity=-0.127 Sum_probs=45.0
Q ss_pred CcEEEEeC-CcccHHHHHHHHHhc-CCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 5 GITVLEFA-GLAPAPFCGMILNEF-GATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 5 GvrVld~~-~~~agp~~~~~Ladl-GA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+.+|+=.+ .+.-|....+.|... |-+|+-+-+.......+ ..+.+-+.+..|+.+++. .+.++++.+|+||+.
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~gDl~d~~~--~l~~~l~~~D~ViHl 389 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF-LGHPRFHFVEGDISIHSE--WIEYHIKKCDVVLPL 389 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh-cCCCceEEEeccccCcHH--HHHHHhcCCCEEEEC
Confidence 45666666 455576667666654 79999887643211111 112234556779987653 356677899999984
No 422
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=30.27 E-value=56 Score=32.99 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.9
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.-||=++..++|-.|+..+++.|++|+-||.-
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45788899999999999999999999999974
No 423
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.27 E-value=1.9e+02 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCCcEEEEeCCcc-cHHHHHHHHHh-cCCcEEEEccCCC
Q psy1367 3 LKGITVLEFAGLA-PAPFCGMILNE-FGATVIRIDKHGA 39 (381)
Q Consensus 3 L~GvrVld~~~~~-agp~~~~~Lad-lGA~VikvE~p~~ 39 (381)
|.|.||.=++... +-+ .+++|.+ +|.+|+.+-.+..
T Consensus 288 l~Gkrvai~g~~~~~~~-la~~L~eelGm~~v~v~t~~~ 325 (427)
T PRK02842 288 LRGKRVFFLPDSQLEIP-LARFLSRECGMELVEVGTPYL 325 (427)
T ss_pred cCCcEEEEECCchhHHH-HHHHHHHhCCCEEEEeCCCCC
Confidence 7888987666432 333 4666776 9999999987653
No 424
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=30.22 E-value=1e+02 Score=30.31 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.4
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
..|+=.+.+++|-+++..|+..|-+|.-||+-
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 46888899999999999999999999999985
No 425
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.14 E-value=2.1e+02 Score=25.20 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC-chhhh-ccCCc--ceEEeeCCCcchHHHHHHHH----hc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP-FVQDT-VGYGK--KSLCINLKKAKGLSVMKNLA----NQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~-~~~~~-~nrgK--~sv~ldl~~~~g~~~~~~L~----~~ 73 (381)
+.+.+||=.+ ...-|-...+.|+..|++|+-+-+..... ..... ...+. ..+..|+.+++..+.+.+=+ ..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4555666554 23346667778889999998887653211 11111 11232 34558998887644332222 23
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||++.
T Consensus 83 id~vi~~a 90 (246)
T PRK05653 83 LDILVNNA 90 (246)
T ss_pred CCEEEECC
Confidence 58888875
No 426
>PRK06180 short chain dehydrogenase; Provisional
Probab=30.10 E-value=1.1e+02 Score=28.18 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCCCchhhhcc-CCcceEEeeCCCcchHHHH-HHHH---hcCCEEEeCCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQPFVQDTVG-YGKKSLCINLKKAKGLSVM-KNLA---NQSDVILEPFR 82 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~~~~~~~~n-rgK~sv~ldl~~~~g~~~~-~~L~---~~aDv~i~n~~ 82 (381)
-|-...+.|++.|++|+-+-+......-....+ .+=..+.+|+.+++..+.+ .++. ...|+||+|-.
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag 87 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAG 87 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 377778888999999999876432111111111 1223567899998764332 2222 24799998854
No 427
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=29.76 E-value=2.6e+02 Score=24.96 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=45.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.|+|-+||=++.+-.|---.+.|.+.||+|+-|.+.-. +........|+ |.+--+..+ ...+.++|+||..-
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~-~~l~~l~~~~~--i~~~~~~~~-----~~dl~~~~lVi~at 77 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE-SELTLLAEQGG--ITWLARCFD-----ADILEGAFLVIAAT 77 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHHcCC--EEEEeCCCC-----HHHhCCcEEEEECC
Confidence 37899999999887777888899999999999875432 11111122222 333112211 23467899888763
No 428
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=29.74 E-value=1.1e+02 Score=30.62 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC--CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
.|.|-+|+=++.+=+|-.+...|++.|+.-|.|=+.... ..+...++.+ ..+. -+.+.+++.+|||||.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~-~~~~--------~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA-SAHY--------LSELPQLIKKADIIIA 248 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC-eEec--------HHHHHHHhccCCEEEE
Confidence 478999999999989999999999999876666554311 1111112211 1111 2346888999999998
Q ss_pred CCC
Q psy1367 80 PFR 82 (381)
Q Consensus 80 n~~ 82 (381)
+-.
T Consensus 249 aT~ 251 (414)
T PRK13940 249 AVN 251 (414)
T ss_pred CcC
Confidence 753
No 429
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.71 E-value=1.6e+02 Score=27.60 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCcceEEeeCCCcchHHHHHH-H---Hhc
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGKKSLCINLKKAKGLSVMKN-L---ANQ 73 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK~sv~ldl~~~~g~~~~~~-L---~~~ 73 (381)
++|-+||=.+ ..--|-..++.|+..|++|+-+-+.... ......+ +..-..+.+|+.+++..+.+.+ + ...
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5565666554 2223677778888999999988654211 1111111 1112356789988776443333 1 225
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 78988874
No 430
>PRK06197 short chain dehydrogenase; Provisional
Probab=29.67 E-value=1.6e+02 Score=27.68 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc---cCCc--ceEEeeCCCcchHHHHHH-HH---
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV---GYGK--KSLCINLKKAKGLSVMKN-LA--- 71 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~---nrgK--~sv~ldl~~~~g~~~~~~-L~--- 71 (381)
|+|-+||=.+ ..--|-..++.|+..|++||-+-+.... ......+ +.+. ..+.+|+.+++..+.+.+ +.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 5666666554 2233777888899999999887543211 1111111 1122 356789999877554433 32
Q ss_pred hcCCEEEeCC
Q psy1367 72 NQSDVILEPF 81 (381)
Q Consensus 72 ~~aDv~i~n~ 81 (381)
...|+||+|-
T Consensus 94 ~~iD~li~nA 103 (306)
T PRK06197 94 PRIDLLINNA 103 (306)
T ss_pred CCCCEEEECC
Confidence 2479999885
No 431
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=29.62 E-value=76 Score=31.21 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEE
Q psy1367 1 MALKGITVLEFAGLAPAPFCGMILNEFGATVIRI 34 (381)
Q Consensus 1 ~pL~GvrVld~~~~~agp~~~~~LadlGA~Vikv 34 (381)
+||.|.||+=....-+..+ ...|.++|++|+-+
T Consensus 7 ~pL~g~rIlvtr~~~a~~l-a~~L~~~G~~~~~~ 39 (381)
T PRK07239 7 APLAGFTVGVTAARRAEEL-AALLERRGARVVHA 39 (381)
T ss_pred CCCCCcEEEEeccCCHHHH-HHHHHHcCCeEEEe
Confidence 5999999988876545555 48899999999875
No 432
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=29.62 E-value=2.1e+02 Score=25.35 Aligned_cols=65 Identities=14% Similarity=0.010 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHhc--CCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 13 GLAPAPFCGMILNEF--GATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 13 ~~~agp~~~~~Ladl--GA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
.++ |-..++.|++. +..|+..-+..... + .+.+-..+..|+.+++..+.+.+.+...|+||.|-.
T Consensus 10 ~gI-G~~ia~~l~~~~~~~~v~~~~~~~~~~--~--~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG 76 (235)
T PRK09009 10 GGI-GKAMVKQLLERYPDATVHATYRHHKPD--F--QHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVG 76 (235)
T ss_pred ChH-HHHHHHHHHHhCCCCEEEEEccCCccc--c--ccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCc
Confidence 444 55556666666 46666543322111 1 112224588999999887777777778899998753
No 433
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.61 E-value=1.2e+02 Score=30.28 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=44.1
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCcEEEEccCC--------CCCch-------hhhccCCc--ceEEeeCCCcchHHHHHH
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGATVIRIDKHG--------AQPFV-------QDTVGYGK--KSLCINLKKAKGLSVMKN 69 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~VikvE~p~--------~~~~~-------~~~~nrgK--~sv~ldl~~~~g~~~~~~ 69 (381)
||--++.++-|-..|.+||++|=||+-|+--. +-++. +..-|.++ -+.+.| ..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd---------~~~ 72 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTD---------YEE 72 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcC---------HHH
Confidence 55567777889999999999999999998532 11121 23334444 667777 445
Q ss_pred HHhcCCEEEeC
Q psy1367 70 LANQSDVILEP 80 (381)
Q Consensus 70 L~~~aDv~i~n 80 (381)
-++.+||++-.
T Consensus 73 a~~~adv~fIa 83 (414)
T COG1004 73 AVKDADVVFIA 83 (414)
T ss_pred HHhcCCEEEEE
Confidence 57899986644
No 434
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=29.59 E-value=42 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=15.3
Q ss_pred HHHHcCCCHHHHhhhCCCc
Q psy1367 85 VMEKLQLGPDVLCKSNPRL 103 (381)
Q Consensus 85 ~~~~lGl~~~~l~~~nP~l 103 (381)
...+.|+..++|.+.||++
T Consensus 12 IA~~~~~~~~~l~~~N~~~ 30 (44)
T PF01476_consen 12 IAKRYGISVDELMELNPNI 30 (44)
T ss_dssp HHHHTTS-HHHHHHHCCTT
T ss_pred HHhhhhhhHhHHHHhcCCC
Confidence 4667899999999999876
No 435
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.50 E-value=34 Score=21.60 Aligned_cols=31 Identities=6% Similarity=0.047 Sum_probs=23.2
Q ss_pred HhhcCHHHHHHHhhcCCCeEeecc-Chhhhhc
Q psy1367 272 FKEKTQAEWCEIFDNTDACVTPVL-SLSQATS 302 (381)
Q Consensus 272 ~~~~t~~ew~~~l~~a~vp~~~V~-~~~e~~~ 302 (381)
|-+++..++.+-|..+||+..+-. +.+|++.
T Consensus 1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~ 32 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLK 32 (38)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 346777888888888999887766 7777654
No 436
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=29.41 E-value=1.4e+02 Score=30.17 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHH--hcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLA--NQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~--~~aDv~i~n 80 (381)
|.|.||.=.+..-..-..+++|.++|.+|+.+-...... ++.....+ ..+. ++.+.+.+++ ..+|++|-|
T Consensus 309 l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~-~~~~~~~~-~~~~------~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 309 LGGKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSP-LLQKLPVE-TVVI------GDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred hCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCH-HHHhCCcC-cEEe------CCHHHHHHHHhhcCCCEEEEC
Confidence 678888655543233345777999999999998665422 33222111 2222 2345667777 558899988
Q ss_pred CCccHHH-HcCC
Q psy1367 81 FRKGVME-KLQL 91 (381)
Q Consensus 81 ~~pg~~~-~lGl 91 (381)
.....+. ++|+
T Consensus 381 s~~k~~A~~l~i 392 (432)
T TIGR01285 381 SHGRALAQRLAL 392 (432)
T ss_pred cchHHHHHHcCC
Confidence 7775543 3444
No 437
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=29.36 E-value=1.5e+02 Score=26.72 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=40.4
Q ss_pred CcceEEeeCCCcchHHHHHHHHhcC----CEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEE
Q psy1367 50 GKKSLCINLKKAKGLSVMKNLANQS----DVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108 (381)
Q Consensus 50 gK~sv~ldl~~~~g~~~~~~L~~~a----Dv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~i 108 (381)
+|..+-+|+|+++-.+.+.+++++. .|+|.+|.+..+.+ +++++|.+-..-+
T Consensus 91 ~~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~-------~~~~~p~~~~~~l 146 (226)
T cd08568 91 NDAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRE-------LRKLDPDAKVGLL 146 (226)
T ss_pred CCcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-------HHHhCCCCcEEEE
Confidence 4456999999987767788888764 58999999988865 6889998754433
No 438
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=29.35 E-value=63 Score=32.71 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=29.1
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
..|+=++-+.||..|+..||..|.+|+-+|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 45888899999999999999999999999974
No 439
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=29.30 E-value=55 Score=32.21 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=30.1
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
..|+=++.+++|..++..|+..|.+|+-+|+-.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 568888999999999999999999999999754
No 440
>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function.
Probab=29.26 E-value=65 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCCCcCHHHHHHhCCCCHHHHHHHHhCCeeec
Q psy1367 340 HNPAPGVHTREVLRHFGYSDANIEELIREDVIEE 373 (381)
Q Consensus 340 ~aP~lGeht~evL~elG~s~~~I~~L~~~gvi~~ 373 (381)
..|+-|| +|++.++|+...+.|-|.+
T Consensus 26 RIPRRGE--------IGltseeI~~~E~~GYVMS 51 (104)
T PF06047_consen 26 RIPRRGE--------IGLTSEEIASFEDVGYVMS 51 (104)
T ss_pred CCCCCcc--------cCCCHHHHHHHHhcCeeee
Confidence 3677787 8999999999999999874
No 441
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=29.26 E-value=87 Score=23.60 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=45.2
Q ss_pred cHHHHHHHHHhcC---CcEEEE-ccCCCCCchhhhccCCcceEEe-eCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcC
Q psy1367 16 PAPFCGMILNEFG---ATVIRI-DKHGAQPFVQDTVGYGKKSLCI-NLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQ 90 (381)
Q Consensus 16 agp~~~~~LadlG---A~Vikv-E~p~~~~~~~~~~nrgK~sv~l-dl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lG 90 (381)
-|-.-++-|...| .+|+-+ .+.. ...-....+.+-.+.- | ..++++.|||||-+.+|..+..+
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~advvilav~p~~~~~v- 77 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEYGVQATADD---------NEEAAQEADVVILAVKPQQLPEV- 77 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHCTTEEESEE---------HHHHHHHTSEEEE-S-GGGHHHH-
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhhccccccCC---------hHHhhccCCEEEEEECHHHHHHH-
Confidence 3445567778888 888876 4321 1111111111111222 2 56778899999999999988764
Q ss_pred CCHHHHhhhCCCcEEEEEe
Q psy1367 91 LGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 91 l~~~~l~~~nP~lI~~~is 109 (381)
.+++...+++=+++|++
T Consensus 78 --~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 78 --LSEIPHLLKGKLVISIA 94 (96)
T ss_dssp --HHHHHHHHTTSEEEEES
T ss_pred --HHHHhhccCCCEEEEeC
Confidence 23334556677777775
No 442
>PRK06184 hypothetical protein; Provisional
Probab=29.21 E-value=1.1e+02 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=30.1
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
..|+=++..++|-.++..|+..|-+|+-||+-.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 568889999999999999999999999999754
No 443
>PLN02612 phytoene desaturase
Probab=29.17 E-value=65 Score=33.69 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=33.6
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
|..+.+|+-++.+++|-.|+..|++.|.+|+-+|.-.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4567899999999999999999999999999999743
No 444
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=29.11 E-value=3.8e+02 Score=23.12 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhc--CCcEEEEccC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEF--GATVIRIDKH 37 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~Ladl--GA~VikvE~p 37 (381)
-.|-+|||++.+ .|-++..+.... .++|+-||.-
T Consensus 31 ~~g~~VLDiG~G-tG~~~~~l~~~~~~~~~v~~vDis 66 (188)
T TIGR00438 31 KPGDTVLDLGAA-PGGWSQVAVEQVGGKGRVIAVDLQ 66 (188)
T ss_pred CCCCEEEEecCC-CCHHHHHHHHHhCCCceEEEEecc
Confidence 467899999976 455655555444 2468888864
No 445
>KOG1370|consensus
Probab=29.07 E-value=2.4e+02 Score=27.28 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=61.9
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
++|-.++-.+-.=-|--|++-|-.+||.||--|-. |-...+...-|=+.+++ .+.++.+||||+.-.
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiD--PI~ALQAaMeG~~V~tm-----------~ea~~e~difVTtTG 278 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEID--PICALQAAMEGYEVTTL-----------EEAIREVDIFVTTTG 278 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccC--chHHHHHHhhccEeeeH-----------HHhhhcCCEEEEccC
Confidence 34444555554445788999999999999987732 23344455667666665 466788999998532
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeCC
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgfG 112 (381)
= -+- +.-+.+.+..-+-|.|.+.=|-
T Consensus 279 c--~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 279 C--KDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred C--cch--hhHHHHHhCcCCcEEecccccc
Confidence 2 111 3346777777788888886664
No 446
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.99 E-value=1.6e+02 Score=29.99 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+.|-+|+=++-...|--|.+.|...||+|+-.+....+ ......-....+|...+.+ -.. .....+|+||-|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~----~~~-~~~~~~d~vV~S 76 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGS----HDD-EDLAEFDLVVKS 76 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhccCceeecCc----cch-hccccCCEEEEC
Confidence 34788999999999999999999999999999844322 1111111122333332222 112 456789999986
No 447
>PRK07045 putative monooxygenase; Reviewed
Probab=28.93 E-value=66 Score=31.45 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=30.4
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
++|+=++.+++|..++..|+..|-+|+-+|.-.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 578899999999999999999999999999764
No 448
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=28.81 E-value=2.7e+02 Score=24.79 Aligned_cols=78 Identities=9% Similarity=-0.100 Sum_probs=42.1
Q ss_pred CCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCCC--chhhh-ccCCcc--eEEeeCCCcchHHHHH-HHH---hc
Q psy1367 4 KGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQP--FVQDT-VGYGKK--SLCINLKKAKGLSVMK-NLA---NQ 73 (381)
Q Consensus 4 ~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~~--~~~~~-~nrgK~--sv~ldl~~~~g~~~~~-~L~---~~ 73 (381)
+|-+||=.+ ..--|-..++.|++.|++|+-+-...... ..... ...|.+ .+..|+.+++..+.+. ++. ..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 444444443 22347788899999999998754322110 01111 112323 3457988877654332 222 34
Q ss_pred CCEEEeCC
Q psy1367 74 SDVILEPF 81 (381)
Q Consensus 74 aDv~i~n~ 81 (381)
.|+||+|-
T Consensus 82 id~li~~a 89 (246)
T PRK12938 82 IDVLVNNA 89 (246)
T ss_pred CCEEEECC
Confidence 78888874
No 449
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=28.69 E-value=60 Score=33.03 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=29.7
Q ss_pred CCCcE-EEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 3 LKGIT-VLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 3 L~Gvr-Vld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
+.++| |+|..+..++.+.-.+|.+||++|+.+-.
T Consensus 176 ~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~ 210 (464)
T COG1109 176 LRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINC 210 (464)
T ss_pred cCCcEEEEECCCCchhHHHHHHHHHcCCEEEEecC
Confidence 45555 67999999999999999999999999974
No 450
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=28.59 E-value=82 Score=31.78 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
|-.+.+|+=++...||-.|+..|+..|.+|+-+|+..
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4568899999999999999999999999999999743
No 451
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.52 E-value=2.7e+02 Score=27.98 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhh----cc-CCcceEEeeCCCcchHHHHHHHHhc--CC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDT----VG-YGKKSLCINLKKAKGLSVMKNLANQ--SD 75 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~----~n-rgK~sv~ldl~~~~g~~~~~~L~~~--aD 75 (381)
|.|.||.=.+..--.---+++|.++|.+|+.|-........... .. .+...+.+|-.+ ...+.+++++ +|
T Consensus 298 l~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d---~~e~~~~l~~~~~d 374 (429)
T cd03466 298 NFGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGAD---FFDIESYAKELKID 374 (429)
T ss_pred cCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCC---HHHHHHHHHhcCCC
Confidence 57888876564322333478889999999777654332221111 12 234455554433 3446666543 89
Q ss_pred EEEeCCCccH-HHHcCC
Q psy1367 76 VILEPFRKGV-MEKLQL 91 (381)
Q Consensus 76 v~i~n~~pg~-~~~lGl 91 (381)
++|-|..... ..|+|+
T Consensus 375 liiG~s~~~~~a~~~~i 391 (429)
T cd03466 375 VLIGNSYGRRIAEKLGI 391 (429)
T ss_pred EEEECchhHHHHHHcCC
Confidence 9998866533 333554
No 452
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=28.51 E-value=2.1e+02 Score=26.46 Aligned_cols=66 Identities=11% Similarity=-0.085 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhcC--CcEEEEccCCC--CCchhhh--ccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEeCCCc
Q psy1367 15 APAPFCGMILNEFG--ATVIRIDKHGA--QPFVQDT--VGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILEPFRK 83 (381)
Q Consensus 15 ~agp~~~~~LadlG--A~VikvE~p~~--~~~~~~~--~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~n~~p 83 (381)
.-|....+.|...| .+|+-+..... ....... .+.+-+.+..|+.+++. +.++++. +|+||++-..
T Consensus 10 ~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 10 FIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDREL---VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred hHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHH---HHHHHhhcCCCEEEEcccc
Confidence 34666666666666 78987764321 1111111 12244567789998765 5666666 8999998754
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=28.49 E-value=4.7e+02 Score=24.85 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=56.7
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCC-cEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEEeCC
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGA-TVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVILEPF 81 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA-~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i~n~ 81 (381)
|-+|+=.+...-|-++.+++..+|+ .|+-+.....-......+ |- ...+|.++++-.+.++++.. ..|++|++.
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~--ga-~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL--GA-TIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--CC-CEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 5566666655557788888899999 677775432111111111 22 24567666665666777764 399999986
Q ss_pred Cc-cHHHHcCCCHHHHhhhCCCcEEEEEeeCC
Q psy1367 82 RK-GVMEKLQLGPDVLCKSNPRLIYARLSGYG 112 (381)
Q Consensus 82 ~p-g~~~~lGl~~~~l~~~nP~lI~~~isgfG 112 (381)
.. ..++ +.++.+.+.=.++.+..++
T Consensus 250 g~~~~~~------~~~~~l~~~G~~v~~g~~~ 275 (351)
T cd08233 250 GVQATLD------TAIDALRPRGTAVNVAIWE 275 (351)
T ss_pred CCHHHHH------HHHHhccCCCEEEEEccCC
Confidence 42 2222 2344444554555555444
No 454
>PRK10015 oxidoreductase; Provisional
Probab=28.47 E-value=63 Score=32.42 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=29.5
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
..||=++...||..|+..||..|.+|+-||+..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 468888999999999999999999999999743
No 455
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.45 E-value=67 Score=32.83 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHHHHhcCCcEEEEc
Q psy1367 1 MALKGITVLEFAGLAP-APFCGMILNEFGATVIRID 35 (381)
Q Consensus 1 ~pL~GvrVld~~~~~a-gp~~~~~LadlGA~VikvE 35 (381)
.||+|+||.-.-+.-+ ...-...|.++||+|.-.-
T Consensus 41 ~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~ 76 (476)
T PTZ00075 41 KPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCS 76 (476)
T ss_pred CCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEc
Confidence 3999999998887654 4556778999999998655
No 456
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=28.43 E-value=2.3e+02 Score=27.01 Aligned_cols=73 Identities=3% Similarity=-0.120 Sum_probs=42.9
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC-Cchh--hh--ccCCcceEEeeCCCcchHHHHHHHHhc--CCEEE
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQ--DT--VGYGKKSLCINLKKAKGLSVMKNLANQ--SDVIL 78 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~--~~--~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i 78 (381)
|||=.+ +..-|....+.|...|.+|+-+-..... .... .. .+...+.+.+|+++++. +.++++. .|+||
T Consensus 3 ~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~~D~Vi 79 (355)
T PRK10217 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAE---LARVFTEHQPDCVM 79 (355)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHH---HHHHHhhcCCCEEE
Confidence 344443 3445888888888899987654221110 1111 11 12234467889998764 6666664 89999
Q ss_pred eCCC
Q psy1367 79 EPFR 82 (381)
Q Consensus 79 ~n~~ 82 (381)
++--
T Consensus 80 h~A~ 83 (355)
T PRK10217 80 HLAA 83 (355)
T ss_pred ECCc
Confidence 9863
No 457
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=65 Score=32.96 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=29.6
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.||+=++.++||=.|++.|||.|-||+-.|.-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEecc
Confidence 38899999999999999999999999999964
No 458
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=28.18 E-value=1.8e+02 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=23.4
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+++++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 251 l~~~~~~ADIvIsAvGkp~~-----v~~d~vk---~GavVIDVG 286 (345)
T PLN02897 251 PEQITRKADIVIAAAGIPNL-----VRGSWLK---PGAVVIDVG 286 (345)
T ss_pred HHHHHhhCCEEEEccCCcCc-----cCHHHcC---CCCEEEEcc
Confidence 577899999999864 3332 3444444 677777654
No 459
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=28.06 E-value=4.8e+02 Score=24.97 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHh--cCCEEEeCC
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLAN--QSDVILEPF 81 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i~n~ 81 (381)
|-+|+=.+...-|-++.+++..+|++ ||-+++...-...-..+.. ...+|.++++-.+.+.++.. .+|++|+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga---~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA---THTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---ceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 55677666554566777788888996 8887654311011111111 24566666666666777764 489999876
Q ss_pred C
Q psy1367 82 R 82 (381)
Q Consensus 82 ~ 82 (381)
.
T Consensus 254 g 254 (358)
T TIGR03451 254 G 254 (358)
T ss_pred C
Confidence 4
No 460
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=28.06 E-value=2e+02 Score=27.06 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=54.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhcc-CCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVG-YGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~n-rgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
+.+-+|+=++.+-+|..+...|+.+|+.-|.|=+.... ...-..++ +.......... .+.+.++.+|+||.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~------~~~~~~~~aDiVIn 198 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS------DLAAALAAADGLVH 198 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc------chHhhhCCCCEEEE
Confidence 46678999999999999999999999954444333211 11111111 11111112221 13456688999998
Q ss_pred CCCccHHH--HcCCCHHHHhhhCCCcEEEEEe
Q psy1367 80 PFRKGVME--KLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 80 n~~pg~~~--~lGl~~~~l~~~nP~lI~~~is 109 (381)
.-+-|.-. ..-++.+ .+.|..+.+++.
T Consensus 199 aTp~Gm~~~~~~~~~~~---~l~~~~~v~Div 227 (284)
T PRK12549 199 ATPTGMAKHPGLPLPAE---LLRPGLWVADIV 227 (284)
T ss_pred CCcCCCCCCCCCCCCHH---HcCCCcEEEEee
Confidence 86555321 1123333 234555666665
No 461
>PRK07588 hypothetical protein; Provisional
Probab=28.00 E-value=70 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=29.3
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
.+|+=++.+++|-.++..|+..|.+|+-+|+-
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCC
Confidence 36888899999999999999999999999975
No 462
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.91 E-value=3.1e+02 Score=23.64 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=56.3
Q ss_pred EEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCC-----C-C----------------chhhhccCCcceEEeeCCCcch
Q psy1367 7 TVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGA-----Q-P----------------FVQDTVGYGKKSLCINLKKAKG 63 (381)
Q Consensus 7 rVld~~~~~agp~~~~~LadlGA~-VikvE~p~~-----~-~----------------~~~~~~nrgK~sv~ldl~~~~g 63 (381)
||+=++-.--|......|+..|-. ++-++.-.- . . .....+|..-+..+.+-+-.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~- 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE- 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence 355566565688899999999996 554443210 0 0 012234444443333332222
Q ss_pred HHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhh-CCCcEEEEEee-CCC
Q psy1367 64 LSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKS-NPRLIYARLSG-YGQ 113 (381)
Q Consensus 64 ~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~-nP~lI~~~isg-fG~ 113 (381)
+.+.++++++|+||+....-. .|.=+ .+.+.+. +-.+|+.+..+ ||+
T Consensus 80 -~~~~~~l~~~DlVi~~~d~~~-~r~~i-~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAFDNAE-TKAML-AESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred -hhHHHHhcCCCEEEECCCCHH-HHHHH-HHHHHHHCCCCEEEEehhhccCC
Confidence 347788999999999854322 22222 2334444 76777764443 444
No 463
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=27.86 E-value=1.4e+02 Score=28.32 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=46.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCC--C---CchhhhccCCc-ceEEeeCCCcchHHHHHHHHhcCCE
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA--Q---PFVQDTVGYGK-KSLCINLKKAKGLSVMKNLANQSDV 76 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~--~---~~~~~~~nrgK-~sv~ldl~~~~g~~~~~~L~~~aDv 76 (381)
++|-+|+=++.+-++......|+.+|+.-|.|=+... . ...-..++... ..+.+ .+.+..+.+.+.+.++|+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDLADQQAFAEALASADI 199 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--echhhhhhhhhhcccCCE
Confidence 5677899999888888778889999986565543321 1 11111122111 11222 122222335556678999
Q ss_pred EEeCCCccH
Q psy1367 77 ILEPFRKGV 85 (381)
Q Consensus 77 ~i~n~~pg~ 85 (381)
||..-+.|.
T Consensus 200 vINaTp~Gm 208 (288)
T PRK12749 200 LTNGTKVGM 208 (288)
T ss_pred EEECCCCCC
Confidence 998766654
No 464
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=27.73 E-value=3.2e+02 Score=26.06 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=39.9
Q ss_pred EEEEeC-CcccHHHHHHHHHh-cCCcEEEEccCCCCCchhhhcc-CCcceEEeeCCCcchHHHHHHHHhcCCEEEeC
Q psy1367 7 TVLEFA-GLAPAPFCGMILNE-FGATVIRIDKHGAQPFVQDTVG-YGKKSLCINLKKAKGLSVMKNLANQSDVILEP 80 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~Lad-lGA~VikvE~p~~~~~~~~~~n-rgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n 80 (381)
+|+=++ .+.-|....+.|.+ -|-+|+-+.+.... .-.... .+=+.+..|+..+ .+.+.++++.+|+||+.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~--~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR--LGDLVNHPRMHFFEGDITIN--KEWIEYHVKKCDVILPL 75 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH--HHHhccCCCeEEEeCCCCCC--HHHHHHHHcCCCEEEEC
Confidence 455444 24446555555554 47899988643211 001111 1233566788632 24577888899999984
No 465
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=27.68 E-value=3.5e+02 Score=26.29 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCC-cEEEEccCCCC------Cchhh-------------------hccCCcceEEe
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGA-TVIRIDKHGAQ------PFVQD-------------------TVGYGKKSLCI 56 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA-~VikvE~p~~~------~~~~~-------------------~~nrgK~sv~l 56 (381)
|..-||+=++-+--|......|+..|- +++-|+.-.-. ..+|. .+|..-+..+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 556788888877778889999999999 66666653210 11111 12222211122
Q ss_pred --eCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEEee-CCC
Q psy1367 57 --NLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSG-YGQ 113 (381)
Q Consensus 57 --dl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~isg-fG~ 113 (381)
++. .+-+.++++++|+||....-- -.++-| -+...+.+-.+||+++.| ||+
T Consensus 102 ~~~~~----~~~~~~~~~~~DlVid~~Dn~-~~r~~l-n~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 102 VQDVT----AEELEELVTGVDLIIDATDNF-ETRFIV-NDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred eccCC----HHHHHHHHcCCCEEEEcCCCH-HHHHHH-HHHHHHhCCCEEEEeeeeeeeE
Confidence 222 234678899999999875422 222212 233455677899988766 454
No 466
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.54 E-value=73 Score=30.76 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=49.2
Q ss_pred EeCCcccHHHHHHHHHhcCCcEEEEccCCCC-C-------chhhhccCCcceEE---eeCCCcchHHHHHHHHhcCCEEE
Q psy1367 10 EFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-P-------FVQDTVGYGKKSLC---INLKKAKGLSVMKNLANQSDVIL 78 (381)
Q Consensus 10 d~~~~~agp~~~~~LadlGA~VikvE~p~~~-~-------~~~~~~nrgK~sv~---ldl~~~~g~~~~~~L~~~aDv~i 78 (381)
=++.++-|.--+.+|+..|-+|+-.++.... . ..+..+-+.+.+.. -.++- ..-+.+.++.||+|+
T Consensus 12 VIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av~~aDlVi 88 (321)
T PRK07066 12 AIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACVADADFIQ 88 (321)
T ss_pred EECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHhcCCCEEE
Confidence 3444445655677788999999999864321 0 01111100000000 00000 012557889999999
Q ss_pred eCCCccHHHHcCCCHHHHh-hhCCCcEEEEEe
Q psy1367 79 EPFRKGVMEKLQLGPDVLC-KSNPRLIYARLS 109 (381)
Q Consensus 79 ~n~~pg~~~~lGl~~~~l~-~~nP~lI~~~is 109 (381)
|+.....--|--| ++++. ...|+-|.+|-|
T Consensus 89 EavpE~l~vK~~l-f~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 89 ESAPEREALKLEL-HERISRAAKPDAIIASST 119 (321)
T ss_pred ECCcCCHHHHHHH-HHHHHHhCCCCeEEEECC
Confidence 9965444223222 24443 445677776655
No 467
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=27.48 E-value=1.4e+02 Score=27.78 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=52.9
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccC-CcceEEeeCCCcchHHHHHHHHhcCCEEEeCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGY-GKKSLCINLKKAKGLSVMKNLANQSDVILEPF 81 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nr-gK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~ 81 (381)
.+-+|+=++..-+|......|++.|++|+-+.+.... ...-..++. ++ .....+.. ..+.++||||.+-
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~-~~~~~~~~--------~~~~~~DivInat 186 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGE-IQAFSMDE--------LPLHRVDLIINAT 186 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCc-eEEechhh--------hcccCccEEEECC
Confidence 4667888888778888888899999987776543211 111111111 22 12222211 1135799999887
Q ss_pred CccHHH---HcCCCHHHHhhhCCCcEEEEEe
Q psy1367 82 RKGVME---KLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 82 ~pg~~~---~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.|... ...++.+ ..+|+.+.++++
T Consensus 187 p~gm~~~~~~~~~~~~---~l~~~~~v~D~~ 214 (270)
T TIGR00507 187 SAGMSGNIDEPPVPAE---KLKEGMVVYDMV 214 (270)
T ss_pred CCCCCCCCCCCCCCHH---HcCCCCEEEEec
Confidence 665322 1233333 346777778886
No 468
>PRK08005 epimerase; Validated
Probab=27.45 E-value=2.8e+02 Score=24.97 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHhcCCcEEEE--ccCCCCCch--hhhccCCcceEEeeCCCcchHHHHHHHHhcCCEE-Ee---------CCCccHHH
Q psy1367 22 MILNEFGATVIRI--DKHGAQPFV--QDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVI-LE---------PFRKGVME 87 (381)
Q Consensus 22 ~~LadlGA~Vikv--E~p~~~~~~--~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~-i~---------n~~pg~~~ 87 (381)
..+++.||+-|-| |....+... +.--+--|-.++||..+| .+.+..++...|.| |- .|.|..++
T Consensus 75 ~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~ 152 (210)
T PRK08005 75 PWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCE 152 (210)
T ss_pred HHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEEEEecCCCccceecHHHHH
Confidence 5678899998775 543221111 111234467799999987 46788999999954 43 34555566
Q ss_pred HcCCCHHHHhhhCCC
Q psy1367 88 KLQLGPDVLCKSNPR 102 (381)
Q Consensus 88 ~lGl~~~~l~~~nP~ 102 (381)
|+ .++++..++
T Consensus 153 KI----~~l~~~~~~ 163 (210)
T PRK08005 153 KV----SQSREHFPA 163 (210)
T ss_pred HH----HHHHHhccc
Confidence 64 466666655
No 469
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=27.35 E-value=2e+02 Score=27.46 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHhcCCcEEEEccCCCC---C---chhhhc----cCCcceEEeeCCCcchHHHHHHHHhc--CCEEEeCC
Q psy1367 14 LAPAPFCGMILNEFGATVIRIDKHGAQ---P---FVQDTV----GYGKKSLCINLKKAKGLSVMKNLANQ--SDVILEPF 81 (381)
Q Consensus 14 ~~agp~~~~~LadlGA~VikvE~p~~~---~---~~~~~~----nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~n~ 81 (381)
..-|....+.|...|.+|+-+.+.... . ..+... +.+-+.+..|+++++. +.++++. .|+||++-
T Consensus 10 GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---l~~~~~~~~~d~ViH~A 86 (343)
T TIGR01472 10 GQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSN---LRRIIDEIKPTEIYNLA 86 (343)
T ss_pred CcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHH---HHHHHHhCCCCEEEECC
Confidence 344777788888889999988654211 0 111111 1233567789988654 7777775 59999986
Q ss_pred C
Q psy1367 82 R 82 (381)
Q Consensus 82 ~ 82 (381)
.
T Consensus 87 a 87 (343)
T TIGR01472 87 A 87 (343)
T ss_pred c
Confidence 4
No 470
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=27.29 E-value=89 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=26.1
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEcc
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK 36 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~ 36 (381)
+..|.+|||++.. +|.+ +..|...|+.|+-|+.
T Consensus 209 ~~~g~~vlDLGAs-PGGW-T~~L~~rG~~V~AVD~ 241 (357)
T PRK11760 209 LAPGMRAVDLGAA-PGGW-TYQLVRRGMFVTAVDN 241 (357)
T ss_pred cCCCCEEEEeCCC-CcHH-HHHHHHcCCEEEEEec
Confidence 3578999999965 5777 5777788999999883
No 471
>PRK07121 hypothetical protein; Validated
Probab=27.24 E-value=67 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=29.0
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.-||=++..+||-.|+..+++.|++||-||...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 347778899999999999999999999999753
No 472
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=27.10 E-value=4.6e+02 Score=24.67 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcCCc-EEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhc--CCEEEeC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFGAT-VIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQ--SDVILEP 80 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlGA~-VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~--aDv~i~n 80 (381)
.|-+|+-.+....|-++.+++..+|++ |+-+.+..........+ |- .-.++.+++. .+.+.++... +|+++++
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~--g~-~~~~~~~~~~-~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL--GA-DDTINPKEED-VEKVRELTEGRGADLVIEA 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc--CC-CEEecCcccc-HHHHHHHhCCCCCCEEEEC
Confidence 355677766555577888889999998 88886542111111222 22 2455666666 6677777754 8999987
Q ss_pred CCc
Q psy1367 81 FRK 83 (381)
Q Consensus 81 ~~p 83 (381)
...
T Consensus 235 ~g~ 237 (343)
T cd08236 235 AGS 237 (343)
T ss_pred CCC
Confidence 543
No 473
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=27.07 E-value=1.6e+02 Score=26.93 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhcc--CC-c-ceEEeeCCCcchHH-HHHHHH-------hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTVG--YG-K-KSLCINLKKAKGLS-VMKNLA-------NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~n--rg-K-~sv~ldl~~~~g~~-~~~~L~-------~~aDv~i~n~ 81 (381)
-|...++.|++.|++|+-+-+.... ...-.-++ ++ + ..+.+|+.+++..+ .+.+++ ...|+||+|-
T Consensus 13 IG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~lv~nA 92 (267)
T TIGR02685 13 IGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRAFGRCDVLVNNA 92 (267)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHccCCceEEEECC
Confidence 3788899999999999987433211 11111121 12 2 24678999987532 233333 3579999884
No 474
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=27.07 E-value=1e+02 Score=30.18 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=43.3
Q ss_pred eCCcccHHHHHHHHHhcCC--cEEEEccCCCC-Cchhhh-ccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCcc
Q psy1367 11 FAGLAPAPFCGMILNEFGA--TVIRIDKHGAQ-PFVQDT-VGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKG 84 (381)
Q Consensus 11 ~~~~~agp~~~~~LadlGA--~VikvE~p~~~-~~~~~~-~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg 84 (381)
++.+.-|..+.+.|++.+- +|+-..+-... ...-.. ..-+=+.+.+|..+++. +.++++++||||+...|-
T Consensus 4 lG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 4 LGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPES---LAELLRGCDVVINCAGPF 78 (386)
T ss_dssp E--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHH---HHHHHTTSSEEEE-SSGG
T ss_pred EcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHH---HHHHHhcCCEEEECCccc
Confidence 4445568888899999885 56666543211 111111 23344567888877654 999999999999998775
No 475
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.03 E-value=1.2e+02 Score=26.20 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|+|-+|.=++-.--|..-++.|.|-|.+|+--.+++.. ..-.....|=+-. -+.+.++.||||+--.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~-s~~~A~~~Gf~v~-----------~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSA-SWEKAKADGFEVM-----------SVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCH-HHHHHHHTT-ECC-----------EHHHHHHC-SEEEE-S-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCc-CHHHHHHCCCeec-----------cHHHHHhhCCEEEEeCC
Confidence 56677777776666889999999999999999888642 1111122222211 16778999999987654
Q ss_pred ccHHH
Q psy1367 83 KGVME 87 (381)
Q Consensus 83 pg~~~ 87 (381)
.....
T Consensus 70 D~~q~ 74 (165)
T PF07991_consen 70 DEVQP 74 (165)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44433
No 476
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=26.98 E-value=37 Score=30.82 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHH---hhhCCCcEEEEEe
Q psy1367 58 LKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVL---CKSNPRLIYARLS 109 (381)
Q Consensus 58 l~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l---~~~nP~lI~~~is 109 (381)
+..++.|+.+++|-+.+|+++..-.--..|.-.|....- ..+||-.|.++-+
T Consensus 28 it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD~~ 82 (218)
T COG1985 28 ITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILDSR 82 (218)
T ss_pred EeCHHHHHHHHHHHHHcCEEEECccEEEeeCCccccccCCCCccCCCEEEEECCC
Confidence 467899999999999999998765444444444444333 3367766666544
No 477
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.97 E-value=61 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.5
Q ss_pred CCCCcCHHHHHHhCCCCHHHHHHHHhC
Q psy1367 342 PAPGVHTREVLRHFGYSDANIEELIRE 368 (381)
Q Consensus 342 P~lGeht~evL~elG~s~~~I~~L~~~ 368 (381)
-.+|.+=..+.++||+|+++|+..+..
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~ 36 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKEN 36 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHh
Confidence 347877788888999999999988864
No 478
>PRK06123 short chain dehydrogenase; Provisional
Probab=26.94 E-value=1.7e+02 Score=26.06 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc-cCCc--ceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ--PFVQDTV-GYGK--KSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~--~~~~~~~-nrgK--~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
-|..+++.|++.|+.|+-+-..... ......+ ..++ ..+..|+.+++..+.+.+-+ ...|+||+|-
T Consensus 14 iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (248)
T PRK06123 14 IGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRLDALVNNA 88 (248)
T ss_pred HHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3777888899999999876422110 1111111 1233 35778999876644332222 2468888875
No 479
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.87 E-value=1.2e+02 Score=28.42 Aligned_cols=30 Identities=13% Similarity=-0.103 Sum_probs=22.3
Q ss_pred EEEeCCcccHHHHHHHHHhcCCcEEEEccC
Q psy1367 8 VLEFAGLAPAPFCGMILNEFGATVIRIDKH 37 (381)
Q Consensus 8 Vld~~~~~agp~~~~~LadlGA~VikvE~p 37 (381)
|.=++.+.-|.-.+..|+..|-+|+-++..
T Consensus 6 IaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 6 VTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 333455556777788899999999999864
No 480
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.87 E-value=2.4e+02 Score=26.87 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHHhcCCEEEeCC-CccHHHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 67 MKNLANQSDVILEPF-RKGVMEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 67 ~~~L~~~aDv~i~n~-~pg~~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
+.+.+++|||||... +|+. ++.+-++ |+-|.+++.
T Consensus 196 L~~~~~~ADIvV~AvGkp~~-----i~~~~vk---~GavVIDvG 231 (288)
T PRK14171 196 LSSITSKADIVVAAIGSPLK-----LTAEYFN---PESIVIDVG 231 (288)
T ss_pred HHHHHhhCCEEEEccCCCCc-----cCHHHcC---CCCEEEEee
Confidence 788999999999854 3332 3334444 677776654
No 481
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=26.84 E-value=1.2e+02 Score=27.27 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCcEEEE--ccCCCC--CchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEe
Q psy1367 17 APFCGMILNEFGATVIRI--DKHGAQ--PFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILE 79 (381)
Q Consensus 17 gp~~~~~LadlGA~Vikv--E~p~~~--~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~ 79 (381)
|=.|+|.|...|++|.-+ .++... .....+++.-+....++.++.++ ...++||+|+
T Consensus 65 G~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~------~~~~~dvIVD 125 (203)
T COG0062 65 GLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELED------EPESADVIVD 125 (203)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeeccccc------ccccCCEEEE
Confidence 357899999999766554 433321 12222222222224444444333 5667899987
No 482
>PRK06482 short chain dehydrogenase; Provisional
Probab=26.82 E-value=1.2e+02 Score=27.77 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCcceEEeeCCCcchHHHH-HHHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGKKSLCINLKKAKGLSVM-KNLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK~sv~ldl~~~~g~~~~-~~L~---~~aDv~i~n~ 81 (381)
-|...++.|+..|++|+-+.+.... .......+.+-..+.+|+.+++..+.+ .+.. ...|+||+|-
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 84 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNA 84 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3677788889999999988764311 111111122334578899998764432 2222 3479999874
No 483
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=26.82 E-value=1.4e+02 Score=27.63 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=39.8
Q ss_pred hhhccCCcceEEeeCCCcchH--HHHHHHHhcC-----CEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEEE
Q psy1367 44 QDTVGYGKKSLCINLKKAKGL--SVMKNLANQS-----DVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108 (381)
Q Consensus 44 ~~~~nrgK~sv~ldl~~~~g~--~~~~~L~~~a-----Dv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~i 108 (381)
+..+..+|..+.+|+|.+... +.+.+++++. .|+|.+|.+..+.+ +++.+|++...-+
T Consensus 95 l~~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~-------~~~~~p~~~~g~l 159 (258)
T cd08573 95 VKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYK-------VRKADPKILTGLT 159 (258)
T ss_pred HHHHHhcCCEEEEEeCCCcHHHHHHHHHHHHHCCCccCCEEEEECCHHHHHH-------HHHhCCCceEEEe
Confidence 344444567899999987531 3455555443 58999999999865 6889999765433
No 484
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=26.76 E-value=31 Score=29.84 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=22.6
Q ss_pred CCcEEEEeCCcccHHHHHHHHHhcC---CcEEEEccCC
Q psy1367 4 KGITVLEFAGLAPAPFCGMILNEFG---ATVIRIDKHG 38 (381)
Q Consensus 4 ~GvrVld~~~~~agp~~~~~LadlG---A~VikvE~p~ 38 (381)
.+.+|||++.. +|.| ++.+...+ +.|+-|....
T Consensus 23 ~~~~vlDlG~a-PGGw-s~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 23 KGFTVLDLGAA-PGGW-SQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp TTEEEEEET-T-TSHH-HHHHHTSTTTEEEEEEEESSS
T ss_pred cccEEEEcCCc-ccce-eeeeeecccccceEEEEeccc
Confidence 45899999965 6777 55566666 7777777543
No 485
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=26.44 E-value=2.2e+02 Score=25.32 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCCcEEEEeC-CcccHHHHHHHHHhcCCcEEEEccCCCC--Cchhhh-ccCCcc--eEEeeCCCcchHHHHHH-HH---h
Q psy1367 3 LKGITVLEFA-GLAPAPFCGMILNEFGATVIRIDKHGAQ--PFVQDT-VGYGKK--SLCINLKKAKGLSVMKN-LA---N 72 (381)
Q Consensus 3 L~GvrVld~~-~~~agp~~~~~LadlGA~VikvE~p~~~--~~~~~~-~nrgK~--sv~ldl~~~~g~~~~~~-L~---~ 72 (381)
++|-+|+=.+ ...-|...++.|+..|++|+-+-..... ...... .+.+.+ .+.+|+.+++..+.+.+ .. .
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4555555555 2223677778888899999865322111 111111 123322 36789988875432222 11 2
Q ss_pred cCCEEEeCC
Q psy1367 73 QSDVILEPF 81 (381)
Q Consensus 73 ~aDv~i~n~ 81 (381)
..|+||+|-
T Consensus 84 ~id~vi~~a 92 (247)
T PRK12935 84 KVDILVNNA 92 (247)
T ss_pred CCCEEEECC
Confidence 368888773
No 486
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.41 E-value=2.4e+02 Score=26.55 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=57.4
Q ss_pred cCCcceEEeeCCCcchH--HHHHHHHhc--C----------CEEEeCCCccH----HHHcCCCHHHHhhhCCCcEEEEEe
Q psy1367 48 GYGKKSLCINLKKAKGL--SVMKNLANQ--S----------DVILEPFRKGV----MEKLQLGPDVLCKSNPRLIYARLS 109 (381)
Q Consensus 48 nrgK~sv~ldl~~~~g~--~~~~~L~~~--a----------Dv~i~n~~pg~----~~~lGl~~~~l~~~nP~lI~~~is 109 (381)
.-||+.+.+|++..-.+ +.++.|++. - |++-..+.++. .+. +.-.+|.+..-.-+.+.+.
T Consensus 102 alg~e~v~v~~~~gv~gl~e~lk~lv~~~~id~IvgvD~GGDaLa~GcEe~l~SPLaDa--i~lasL~k~~e~g~~L~V~ 179 (328)
T COG4034 102 ALGKEAVAVDLVDGVRGLAEGLKALVEKEGIDLIVGVDVGGDALAVGCEEGLRSPLADA--ISLASLAKVEEDGVELAVM 179 (328)
T ss_pred HhCceeEEEeccCCcccHHHHHHHHHHhhCccEEEEeccCccceeccccccccchHHHH--HHHHHHHhhcccceEEEEE
Confidence 45788999999885432 356666652 3 44444554443 333 3346788888887889999
Q ss_pred eCCCCCCCCCCCch--HHHHHHhhhcccccCCCC
Q psy1367 110 GYGQDGPYSSMAGH--DINYLGLSGILSLLGWRN 141 (381)
Q Consensus 110 gfG~~Gp~~~~~~~--d~~~~A~sG~~~~~g~~~ 141 (381)
|||++|..+.---. =.-+...+|++...|-..
T Consensus 180 g~GsDGEL~~eyllrriseia~egGlLg~~gl~r 213 (328)
T COG4034 180 GPGSDGELSREYLLRRISEIAREGGLLGTVGLDR 213 (328)
T ss_pred ecCCCCceeHHHHHHHHHHHHhhCCeeeeeccch
Confidence 99999975421000 012457788888777543
No 487
>KOG0069|consensus
Probab=26.36 E-value=2.8e+02 Score=27.06 Aligned_cols=117 Identities=17% Similarity=0.098 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCC
Q psy1367 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFR 82 (381)
Q Consensus 3 L~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~ 82 (381)
|.|-||.=++-.--|-.-++.|--|| .+|---.-.. ...-....++++ -+-+.++++++|++|-|.+
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~-~~~~~~~~~~~~-----------~~d~~~~~~~sD~ivv~~p 226 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ-LPPEEAYEYYAE-----------FVDIEELLANSDVIVVNCP 226 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC-CchhhHHHhccc-----------ccCHHHHHhhCCEEEEecC
Confidence 56777777775445666666666699 7776544321 111122234444 1228899999999999987
Q ss_pred ccHHHHcCCCHHHHhhhCCCcEEEEEeeCCCCCCCCCCCchHHHHH-HhhhcccccCC
Q psy1367 83 KGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSMAGHDINYL-GLSGILSLLGW 139 (381)
Q Consensus 83 pg~~~~lGl~~~~l~~~nP~lI~~~isgfG~~Gp~~~~~~~d~~~~-A~sG~~~~~g~ 139 (381)
-..--+==+.-+.+.+.+++.|.+++. -|+.-+ .+-+++ ..+|-+...|.
T Consensus 227 Lt~~T~~liNk~~~~~mk~g~vlVN~a----RG~iid---e~~l~eaL~sG~i~~aGl 277 (336)
T KOG0069|consen 227 LTKETRHLINKKFIEKMKDGAVLVNTA----RGAIID---EEALVEALKSGKIAGAGL 277 (336)
T ss_pred CCHHHHHHhhHHHHHhcCCCeEEEecc----cccccc---HHHHHHHHhcCCcccccc
Confidence 655444446678899999999999986 455433 344444 35676655553
No 488
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=26.33 E-value=1.2e+02 Score=29.62 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=52.6
Q ss_pred CcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCCCC-Cchhhhc--c-C-CcceEEeeCCCcchHHHHHHHH--------
Q psy1367 5 GITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ-PFVQDTV--G-Y-GKKSLCINLKKAKGLSVMKNLA-------- 71 (381)
Q Consensus 5 GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~~~-~~~~~~~--n-r-gK~sv~ldl~~~~g~~~~~~L~-------- 71 (381)
+-+|||+..+. |-++ ..||+...+|+=||.-... ...-... | - |-+.+.-|. .+.+.+..
T Consensus 198 ~~~vlDl~~G~-G~~s-l~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~-----~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 198 KGDLLELYCGN-GNFS-LALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA-----EEFTQAMNGVREFRRL 270 (353)
T ss_pred CCcEEEEeccc-cHHH-HHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH-----HHHHHHHhhccccccc
Confidence 34799999874 6554 4888888899999965321 0001111 1 1 111222232 22233221
Q ss_pred h-------cCCEEEeCCCccHHHHcCCCHHHHhhh--CCCcEEEEEee
Q psy1367 72 N-------QSDVILEPFRKGVMEKLQLGPDVLCKS--NPRLIYARLSG 110 (381)
Q Consensus 72 ~-------~aDv~i~n~~pg~~~~lGl~~~~l~~~--nP~lI~~~isg 110 (381)
. ..|+++-+- | |-|++.+.+..+ ..++||+|..+
T Consensus 271 ~~~~~~~~~~d~v~lDP-P----R~G~~~~~l~~l~~~~~ivYvsC~p 313 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDP-P----RAGLDPDTCKLVQAYERILYISCNP 313 (353)
T ss_pred cccccccCCCCEEEECC-C----CCCCcHHHHHHHHcCCcEEEEEcCH
Confidence 1 159888763 3 357777765544 67999998764
No 489
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=26.31 E-value=1.1e+02 Score=31.18 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 2 pL~GvrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
.|+|.||+=-+..-.|-++++.|.++||.||-|-...
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4889999998887789999999999999999876554
No 490
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.19 E-value=1.9e+02 Score=27.29 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCcccHHHHHHHHHhcCCcEEEEccCCCC---------CchhhhccCCcce------------EEeeCCCcchHHHHHHH
Q psy1367 12 AGLAPAPFCGMILNEFGATVIRIDKHGAQ---------PFVQDTVGYGKKS------------LCINLKKAKGLSVMKNL 70 (381)
Q Consensus 12 ~~~~agp~~~~~LadlGA~VikvE~p~~~---------~~~~~~~nrgK~s------------v~ldl~~~~g~~~~~~L 70 (381)
+...-|.-.+..|+..|-+|+-++..... ..+-....+|+.+ ++-| + +.
T Consensus 12 GaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~---------~-~~ 81 (286)
T PRK07819 12 GAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD---------L-GD 81 (286)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC---------H-HH
Confidence 43344555567788889999999865321 0111123444431 2222 2 33
Q ss_pred HhcCCEEEeCCCccHHHHcCCCHHHHhhh--CCCcEEEEEe
Q psy1367 71 ANQSDVILEPFRKGVMEKLQLGPDVLCKS--NPRLIYARLS 109 (381)
Q Consensus 71 ~~~aDv~i~n~~pg~~~~lGl~~~~l~~~--nP~lI~~~is 109 (381)
+++||+|||+.....--|-- =+..|.+. .|+-|.++-|
T Consensus 82 ~~~~d~ViEav~E~~~~K~~-l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTE-IFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred hCCCCEEEEecccCHHHHHH-HHHHHHHhhCCCCcEEEECC
Confidence 68999999996554432311 23466776 6889988766
No 491
>PRK06753 hypothetical protein; Provisional
Probab=26.17 E-value=82 Score=30.45 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=30.0
Q ss_pred cEEEEeCCcccHHHHHHHHHhcCCcEEEEccCC
Q psy1367 6 ITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG 38 (381)
Q Consensus 6 vrVld~~~~~agp~~~~~LadlGA~VikvE~p~ 38 (381)
++|+=++..++|-.++..|+..|-+|+-+|+-.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 378889999999999999999999999999754
No 492
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=26.14 E-value=1.1e+02 Score=22.94 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCCCcCHHHHHHhCCCCHHHHHHHHhC
Q psy1367 342 PAPGVHTREVLRHFGYSDANIEELIRE 368 (381)
Q Consensus 342 P~lGeht~evL~elG~s~~~I~~L~~~ 368 (381)
+.+|.|=..+-++|||++.+|+.....
T Consensus 12 ~nlG~dW~~LA~~LG~~~~~I~~i~~~ 38 (77)
T cd08311 12 GRPGRDWRSLAGELGYEDEAIDTFGRE 38 (77)
T ss_pred CCCccCHHHHHHHcCCCHHHHHHHHcC
Confidence 457887666667899999999988643
No 493
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=26.14 E-value=1.1e+02 Score=27.95 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCcEEEEccCCCCCchhhhccCCcceEEeeCCCcchHHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHhhhCCCcEEEE
Q psy1367 28 GATVIRIDKHGAQPFVQDTVGYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107 (381)
Q Consensus 28 GA~VikvE~p~~~~~~~~~~nrgK~sv~ldl~~~~g~~~~~~L~~~aDv~i~n~~pg~~~~lGl~~~~l~~~nP~lI~~~ 107 (381)
.++++.+..-.........+...+..+++|+......+.+.+++..+|+++.|-+... ..+.--.+.+.+.+++.|.+.
T Consensus 113 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~g~~~viit 191 (260)
T PRK09813 113 QYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQED-EFLRLKMKAIVARGAGVVIVT 191 (260)
T ss_pred hCCEEEEeccchHHHHHHHHHHcCCeEEEEcCCCccHHHHHHhCCceeEEEecCCcch-HHHHHHHHHHHHcCCCEEEEE
Confidence 5777777532211223333444445689999766545668899999999987644321 211111234556677777766
Q ss_pred Ee
Q psy1367 108 LS 109 (381)
Q Consensus 108 is 109 (381)
..
T Consensus 192 ~G 193 (260)
T PRK09813 192 LG 193 (260)
T ss_pred EC
Confidence 54
No 494
>PRK07074 short chain dehydrogenase; Provisional
Probab=26.10 E-value=1.5e+02 Score=26.67 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC-CchhhhccCCc-ceEEeeCCCcchHH-HHHHHH---hcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ-PFVQDTVGYGK-KSLCINLKKAKGLS-VMKNLA---NQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~-~~~~~~~nrgK-~sv~ldl~~~~g~~-~~~~L~---~~aDv~i~n~ 81 (381)
|-...+.|++.|++|+-+-+.... ......++..| ..+.+|+.+++... .+.++. ...|+||+|-
T Consensus 15 G~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 85 (257)
T PRK07074 15 GQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVANA 85 (257)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 667778888999999998653221 11112222122 34678999987653 232222 2378888874
No 495
>PLN03013 cysteine synthase
Probab=26.10 E-value=1.5e+02 Score=29.84 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCchh----hhccCCcceEEee-CCCc----ch-----HHHHHHHHhcCCEEEeCCCc
Q psy1367 18 PFCGMILNEFGATVIRIDKHGAQPFVQ----DTVGYGKKSLCIN-LKKA----KG-----LSVMKNLANQSDVILEPFRK 83 (381)
Q Consensus 18 p~~~~~LadlGA~VikvE~p~~~~~~~----~~~nrgK~sv~ld-l~~~----~g-----~~~~~~L~~~aDv~i~n~~p 83 (381)
+.--.++..+||+||.+++..+....+ ......+..+-+| ..++ .| .|+++++-...|+||-..--
T Consensus 211 ~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGt 290 (429)
T PLN03013 211 MERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGT 290 (429)
T ss_pred HHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 444567788999999997543211000 0011111122222 2232 13 45666554468999987765
Q ss_pred cHHHHcCCCHHHHhhhCCCcEEEEEeeCCC
Q psy1367 84 GVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113 (381)
Q Consensus 84 g~~~~lGl~~~~l~~~nP~lI~~~isgfG~ 113 (381)
|-+-. |+ +.-|++.+|++-.+.+-..|.
T Consensus 291 GGtis-Gi-ar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 291 GGTIT-GV-GRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred cHHHH-HH-HHHHHhhCCCCEEEEEEeCCC
Confidence 54321 22 456788899977777777775
No 496
>PRK07069 short chain dehydrogenase; Validated
Probab=26.07 E-value=1.4e+02 Score=26.76 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCC--Cchhhhc--cCCc---ceEEeeCCCcchHHHHHHHH----hcCCEEEeCC
Q psy1367 17 APFCGMILNEFGATVIRIDKHGAQ--PFVQDTV--GYGK---KSLCINLKKAKGLSVMKNLA----NQSDVILEPF 81 (381)
Q Consensus 17 gp~~~~~LadlGA~VikvE~p~~~--~~~~~~~--nrgK---~sv~ldl~~~~g~~~~~~L~----~~aDv~i~n~ 81 (381)
|...++.|+..|++|+-+.+.... ......+ +.++ ..+..|+.+++..+.+.+-+ ...|+||+|-
T Consensus 12 G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (251)
T PRK07069 12 GRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLVNNA 87 (251)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 677788889999999988754211 1111111 1122 24678999988755433322 3579999874
No 497
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=26.03 E-value=56 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCCcCHHHHHHhCCCCHHHHHHHHhCC
Q psy1367 342 PAPGVHTREVLRHFGYSDANIEELIRED 369 (381)
Q Consensus 342 P~lGeht~evL~elG~s~~~I~~L~~~g 369 (381)
-.+|.+-.++-++||+|+.+|+....+-
T Consensus 10 ~~LG~~Wk~lar~LGlse~~Id~Ie~~~ 37 (86)
T cd08779 10 GRLGLDWQAIGLHLGLSYRELQRIKYNN 37 (86)
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 3578888888899999999999888653
No 498
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=26.01 E-value=1.9e+02 Score=25.86 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhcCCcEEEEccCC--CCCchhhh---ccCCcceEEeeCCCcchHHHH-HHHH---hcCCEEEeCC
Q psy1367 16 PAPFCGMILNEFGATVIRIDKHG--AQPFVQDT---VGYGKKSLCINLKKAKGLSVM-KNLA---NQSDVILEPF 81 (381)
Q Consensus 16 agp~~~~~LadlGA~VikvE~p~--~~~~~~~~---~nrgK~sv~ldl~~~~g~~~~-~~L~---~~aDv~i~n~ 81 (381)
-|-.+.+.|+..|++|+-+-... ........ .+.+-..+.+|+.+++..+.+ .++. ...|+||+|-
T Consensus 14 iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (248)
T PRK06947 14 IGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNA 88 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 37788999999999998653221 11111111 122344678899988765433 3332 3578888764
No 499
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=25.88 E-value=77 Score=31.68 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred EEEeCCcccHHHHHHHHHhcC-CcEEEEccC
Q psy1367 8 VLEFAGLAPAPFCGMILNEFG-ATVIRIDKH 37 (381)
Q Consensus 8 Vld~~~~~agp~~~~~LadlG-A~VikvE~p 37 (381)
||=++..+||-.|+..+++.| ++||-||.-
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~ 32 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKM 32 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecC
Confidence 566788899999999999999 999999964
No 500
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=25.87 E-value=2.8e+02 Score=26.39 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=42.2
Q ss_pred EEEEeC-CcccHHHHHHHHHhcCCc-EEEEccCCCC-C-chhhhc--cCCcceEEeeCCCcchHHHHHHHHh--cCCEEE
Q psy1367 7 TVLEFA-GLAPAPFCGMILNEFGAT-VIRIDKHGAQ-P-FVQDTV--GYGKKSLCINLKKAKGLSVMKNLAN--QSDVIL 78 (381)
Q Consensus 7 rVld~~-~~~agp~~~~~LadlGA~-VikvE~p~~~-~-~~~~~~--nrgK~sv~ldl~~~~g~~~~~~L~~--~aDv~i 78 (381)
|||=.+ +..-|....+.|.+.|.+ |+.+...... . .....+ +..-+.+..|+.+++. +.+++. ..|+||
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~~d~vi 78 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAE---LDRIFAQHQPDAVM 78 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHH---HHHHHHhcCCCEEE
Confidence 344443 345588888888889987 4444432110 1 001111 1122457889998754 566665 479999
Q ss_pred eCCCc
Q psy1367 79 EPFRK 83 (381)
Q Consensus 79 ~n~~p 83 (381)
++-..
T Consensus 79 h~A~~ 83 (352)
T PRK10084 79 HLAAE 83 (352)
T ss_pred ECCcc
Confidence 98643
Done!