RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1367
(381 letters)
>gnl|CDD|224717 COG1804, CaiB, Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion].
Length = 396
Score = 323 bits (831), Expect = e-109
Identities = 126/395 (31%), Positives = 183/395 (46%), Gaps = 32/395 (8%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRID--KHG----AQPFVQDTVGY------G 50
L+G+ V++ A + PF G +L + GA VI+++ G V D Y G
Sbjct: 8 LEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVERPGGGDDTRVFAPVADGSAYFLALNRG 67
Query: 51 KKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSG 110
K+S+ ++LK +G ++ L +DV++E FR GV+E+L LG + L NPRLIY +SG
Sbjct: 68 KRSVALDLKTEEGREILLRLVAGADVLIENFRPGVLERLGLGYEALRAINPRLIYCSISG 127
Query: 111 YGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALF 170
+GQ GPY+ G+D+ +G++S+ G + P P AD GGL A+GI+ AL
Sbjct: 128 FGQTGPYADRPGYDLIAQAEAGLMSITGRPDGPPVPAGVAIADL-AGGLYAAIGILAALL 186
Query: 171 ERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGR 230
R ++GRGQ ID M++ + L + T P YD Y T DG+
Sbjct: 187 HRERTGRGQHIDVAMLDAAVSLLANQLMTYLATG-KLPLRPGGAHPAIAPYDVYRTADGK 245
Query: 231 FMAVGALESQFYAQLLAGLGMTEEELP-----------QHEVETGRAKLTEKFKEKTQAE 279
+A+GA +F+ L LG EL + A L F T AE
Sbjct: 246 LVALGAGNDKFWQALCELLGR--PELADDPRFATNHARVANRDELDAILAAAFATNTAAE 303
Query: 280 WCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI--PNRAG-VVAPAPAPRLSRTPGTSK 336
W + PVL++++A + P RG + G V PAP PR S P
Sbjct: 304 WAARLEAAGVPAAPVLTVAEALADPQLQARGLVVEVEGPGGTVPQPAPPPRFSGAPA--G 361
Query: 337 ITEHNPAPGVHTREVLRHFGYSDANIEELIREDVI 371
+ PA G HT +L GYS+ I L I
Sbjct: 362 VMRPPPALGEHTEAILAELGYSEREIAALKATGAI 396
>gnl|CDD|217078 pfam02515, CoA_transf_3, CoA-transferase family III.
CoA-transferases are found in organisms from all lines
of descent. Most of these enzymes belong to two
well-known enzyme families, but recent work on unusual
biochemical pathways of anaerobic bacteria has revealed
the existence of a third family of CoA-transferases. The
members of this enzyme family differ in sequence and
reaction mechanism from CoA-transferases of the other
families. Currently known enzymes of the new family are
a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA:
(R)-benzylsuccinate CoA-transferase, an
(E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase,
and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase.
In addition, a large number of proteins of unknown or
differently annotated function from Bacteria, Archaea
and Eukarya apparently belong to this enzyme family.
Properties and reaction mechanisms of the
CoA-transferases of family III are described and
compared to those of the previously known
CoA-transferases.
Length = 179
Score = 180 bits (459), Expect = 1e-55
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 3/180 (1%)
Query: 54 LCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQ 113
+ ++LK +G ++++ L +DV++E FR GV+E+L LG + L NPRLIY +SG+GQ
Sbjct: 1 VALDLKSPEGRALLRRLVADADVLIENFRPGVLERLGLGYEALRAINPRLIYVSISGFGQ 60
Query: 114 DGPYSSMAGHDINYLGLSGILSLLGWRNRN-PTPPCNLAADFGGGGLMCALGIVMALFER 172
DGPY+ G+D+ LSG++SL G + P P AD GL A+ I+ AL R
Sbjct: 61 DGPYADRPGYDLVVQALSGLMSLTGEPDGGPPVRPGTPIADI-AAGLYAAIAILAALLAR 119
Query: 173 SKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFM 232
++GRGQ ID +++E + L + L PR N GA Y Y T DG
Sbjct: 120 ERTGRGQRIDVSLLEAALALLAPLLLLYLATGAVPPRAGNRHPAGA-PYGLYRTADGWVA 178
>gnl|CDD|183132 PRK11430, PRK11430, putative CoA-transferase; Provisional.
Length = 381
Score = 122 bits (307), Expect = 2e-31
Identities = 98/373 (26%), Positives = 156/373 (41%), Gaps = 40/373 (10%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK--HGAQ-----PFVQDT------VGY 49
+G+ V++ + PF +L GA VI+++ HG P+V + +
Sbjct: 10 FEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINH 69
Query: 50 GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLS 109
GK+S+ ++LK S+ N+ Q+DV+ E FR G MEKL + L + NPRLIYA S
Sbjct: 70 GKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSS 129
Query: 110 GYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMAL 169
G+G GP +D +SGI+ G+ + P AD GG + + GIV AL
Sbjct: 130 GFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFS-GIVSAL 188
Query: 170 FERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFY----DTYE 225
+ R KS RG +D M + + S+L ++ + L G H Y D ++
Sbjct: 189 YGREKSQRGAHVDIAMFDATL---SFLEHGLMAYIATGKSPQRL--GNRHPYMAPFDVFD 243
Query: 226 TKDGRFMAVGALESQFYAQLLAGLGMTE---------EELPQHEVETGRAKLTEKFKEKT 276
T+D + F A L L +TE L + + K +
Sbjct: 244 TQDKPITICCGNDKLFSA-LCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQA 302
Query: 277 QAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLS------R 330
W V P+LS+++A + P R I G++ P ++S
Sbjct: 303 AEVWLARIHEVGVPVAPLLSVAEAINLPQTQARNMLI-EAGGIMMPGNPIKISGCADPHV 361
Query: 331 TPGTSKITEHNPA 343
PG + + +H
Sbjct: 362 MPGAATLDQHGEQ 374
>gnl|CDD|211800 TIGR03253, oxalate_frc, formyl-CoA transferase. This enzyme,
formyl-CoA transferase, transfers coenzyme A from
formyl-CoA to oxalate. It forms a pathway, together with
oxalyl-CoA decarboxylase, for oxalate degradation;
decarboxylation by the latter gene regenerates
formyl-CoA. The two enzymes typically are encoded by a
two-gene operon [Cellular processes, Detoxification].
Length = 415
Score = 120 bits (303), Expect = 1e-30
Identities = 102/420 (24%), Positives = 168/420 (40%), Gaps = 57/420 (13%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG----AQPFVQD----------TV 47
L GI VL+F + P C +L GA VI+I++ G + ++D +
Sbjct: 3 PLDGIKVLDFTHVQSGPSCTQMLAWLGADVIKIERPGVGDITRGQLRDIPDVDSLYFTML 62
Query: 48 GYGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYAR 107
K+S+ +N K +G V++ L ++DV++E F G ++++ + + + NPRLI A
Sbjct: 63 NCNKRSITLNTKTPEGKEVLEELIKKADVMVENFGPGALDRMGFTWEYIQEINPRLILAS 122
Query: 108 LSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCALGI 165
+ G+G+ PY ++ ++ G S G+ + PP A G G+ +GI
Sbjct: 123 IKGFGEGSPYENVKAYENVAQAAGGAASTTGFWD---GPPLVSGAALGDSNTGMHLMIGI 179
Query: 166 VMALFERSKSGRGQVI-----------------DCNMVEGSAYLGSWLTRTQDTFLWDKP 208
+ AL++R +GRGQ + D ++ L + F P
Sbjct: 180 LAALYQREHTGRGQRVTVAMQDAVLNLCRVKLRDQQRLDRLGPLAEYPQYPNGAFGDAVP 239
Query: 209 RGENLLDGG----AHFYDTYETKDGRFMAVGALESQFYAQLLAGLGMTE-EELPQHEVET 263
RG N GG +ET ++ +++ + Q+ +G E P +
Sbjct: 240 RGGNAGGGGQPGWILKCKGWETDPNAYVYF-TIQANNWEQICDMIGKPEWITDPAYATPE 298
Query: 264 GR--------AKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI-- 313
R A + K + E E + PVLS+ + P G+ +
Sbjct: 299 ARQPKLNDIFAFIETYTATKDKFEVTEWLNQYGIPCGPVLSMKEIAEDPSLRAVGTVVEV 358
Query: 314 --PNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELIREDVI 371
P R + +LS P I P G HT EVL+ GY D I EL VI
Sbjct: 359 DQPIRGKYLTVGAPFKLSDFP--PDIKR-APLLGEHTDEVLKELGYDDDEIAELKASGVI 415
>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
Length = 416
Score = 113 bits (285), Expect = 4e-28
Identities = 106/426 (24%), Positives = 174/426 (40%), Gaps = 69/426 (16%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGA------QPFVQDTVG----Y-- 49
L+GI VL+F + P C +L FGA VI++++ G Q ++D Y
Sbjct: 4 PLEGIKVLDFTHVQSGPSCTQLLAWFGADVIKVERPGVGDVTRNQ--LRDIPDVDSLYFT 61
Query: 50 ----GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIY 105
K+S+ ++ K +G V++ L ++DV++E F G ++++ + + + NPRLI
Sbjct: 62 MLNSNKRSITLDTKTPEGKEVLEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLIV 121
Query: 106 ARLSGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFG--GGGLMCAL 163
A + G+G PY + ++ G S G+ + PP A G G+ A+
Sbjct: 122 ASIKGFGPGSPYEDVKAYENVAQCAGGAASTTGFWD---GPPTVSGAALGDSNTGMHLAI 178
Query: 164 GIVMALFERSKSGRGQVIDCNM-----------------VEGSAYLGSWLTRTQDTFLWD 206
GI+ AL +R K+GRGQ + +M ++ YL + TF
Sbjct: 179 GILAALLQREKTGRGQRVTVSMQDAVLNLCRVKLRDQQRLDHLGYLEEYPQYPNGTFGDA 238
Query: 207 KPRGENLLDGG----AHFYDTYETKDGRFMAVGALESQFYAQLLAGLGMTEEELPQH-EV 261
PR N GG +ET ++ ++ Q + + +G + E
Sbjct: 239 VPRAGNASGGGQPGWILKCKGWETDPNAYIYF-IIQPQGWEPICKAIG--KPEWITDPAY 295
Query: 262 ETGRAKLTEKF----------KEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGS 311
T A+ F KT+ E +I + D PVLS+ + P G+
Sbjct: 296 ATPEARQPHLFDIFAEIEKWTMTKTKFEAVDILNAFDIPCGPVLSMKEIAEDPSLRASGT 355
Query: 312 FI----PNRAGVVAPAPAPRLSRTPGTSKITEHNPAP--GVHTREVLRHFGYSDANIEEL 365
+ P R + +LS +P + +P G HT EVL GYSD I L
Sbjct: 356 IVEVDHPLRGKYLTVGSPIKLSDSP-----PDVKRSPLLGEHTDEVLAELGYSDDQIAAL 410
Query: 366 IREDVI 371
+ I
Sbjct: 411 KQNGAI 416
>gnl|CDD|179589 PRK03525, PRK03525, crotonobetainyl-CoA:carnitine CoA-transferase;
Provisional.
Length = 405
Score = 98.7 bits (246), Expect = 8e-23
Identities = 97/399 (24%), Positives = 168/399 (42%), Gaps = 49/399 (12%)
Query: 3 LKGITVLEFAGLAPA-PFCGMILNEFGATVIRIDKHGAQPFVQDTVGYGK------KSLC 55
L G+ V+ F+G+ A PF G + E+GA VI I+ ++ Y + +L
Sbjct: 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 70
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 71 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYG 130
Query: 116 --PYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERS 173
Y+++ ++ SG L G ++ P P AD+ GL + AL +
Sbjct: 131 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQ-PMPAFPYTADY-FSGLTATTAALAALHKAR 188
Query: 174 KSGRGQVIDCNMVE-----GSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKD 228
++G+G+ ID M E G ++ + + K + G Y+ D
Sbjct: 189 ETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCG-----LYKCAD 243
Query: 229 GRFMA---VGALESQFYAQLLAGLGMTE----EELPQ-----HEVETGRAKLTE-KFKE- 274
G ++ VG + + + +G+ E+P+ H +E L E K
Sbjct: 244 G-YIVMELVGITQIK---ECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAW 299
Query: 275 ---KTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI--PNRAG--VVAPAPAPR 327
T AE F + VL++ + S+P V R S G P P+
Sbjct: 300 LAAHTIAEVEARFAELNIACAKVLTIPELESNPQYVARESITQWQTMDGRTCKGPNIMPK 359
Query: 328 LSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELI 366
PG +I P+ G+ T +L++ GYS+ +I+EL+
Sbjct: 360 FKNNPG--QIWRGMPSHGMDTAAILKNIGYSEEDIQELV 396
>gnl|CDD|211976 TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase. Members of
this protein family belong by homology to the family of
CoA transferases. However, the characterized member from
Chloroflexus aurantiacus appears to perform an
intramolecular transfer, making it an isomerase. The
enzyme converts mesaconyl-C1-CoA to mesaconyl-C4-CoA as
part of the bicyclic 3-hydroxyproprionate pathway for
carbon fixation.
Length = 403
Score = 50.7 bits (121), Expect = 6e-07
Identities = 108/420 (25%), Positives = 159/420 (37%), Gaps = 73/420 (17%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHGAQ------PFVQD--------TVG 48
L G+ V+E + AP GM L + GA VIR D G P D +
Sbjct: 3 LHGLRVVEGSAFVAAPLGGMTLAQLGADVIRFDPIGGGLDYKRWPLTLDGKHSLFWAGLN 62
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
GK+S+ I+++ +G ++ L F K L D L LI L
Sbjct: 63 KGKRSIAIDIRHPRGQELLTQLICAPGDHAGLFITNFPAKGWLAYDALKAHRADLIMVNL 122
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCN----LAADFGGGGLMCALG 164
+G +DG G +++Y L+ L L +P A DF G M ALG
Sbjct: 123 TGR-RDG------GSEVDYT-LNPQLGLPFMTGPTSSPDVVNHVFPAWDFISGQ-MIALG 173
Query: 165 IVMALFERSKSGRGQVIDCNMVE-GSAYLGSW----LTRTQDTFLWDKPRGENLLDGGAH 219
++ A R +G GQ++ + + A +G + D D+PR N L G
Sbjct: 174 LLAAERHRRLTGEGQLVKIALKDVALAMIGHFGMIAEAMINDA---DRPRQGNYLYGA-- 228
Query: 220 FYDTYETKDG-RFMAVGALESQF------------YAQLLAGLGMT-EEELPQHEVETGR 265
F +ET DG R M VG + Q+ + L A LG+ ++E +
Sbjct: 229 FGRDFETLDGKRLMVVGLTDLQWKALGKATGLRDAFNALAARLGLDFDDEGDRFRARHEI 288
Query: 266 AKLTEK-FKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI------PNRAG 318
A L E F +T AE IFD P S+ +A + + + + P
Sbjct: 289 AALFEPWFHARTLAEAALIFDAHGVTWAPYRSVREAIAADPDCSTDNPMFALTEQPGIGR 348
Query: 319 VVAP------APAPRLSRTPGTSKITEHNPAPGVHTREVLRH-FGYSDANIEELIREDVI 371
+ P A PRL P P G HT E+L G S+A + L ++
Sbjct: 349 YLMPGSPLDFAAVPRLPAMPA--------PRLGEHTDEILLDILGLSEAEVGRLHDAGIV 400
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 32.1 bits (73), Expect = 0.46
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 296 SLSQATSH--PHNVHRG-SFIPNRAGVVAP--------APAPRLSRTPGTSKITEHNPAP 344
S+S+ S P + RG SF+ NR AP PA RL+R P + + H+ A
Sbjct: 23 SVSKRWSAQLPSGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEAT 82
Query: 345 GVHT 348
V
Sbjct: 83 IVRQ 86
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 31.1 bits (71), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 332 PGTSKITEHNPAPGV-HTREVLRHFGYS 358
G + +TE PAP HT +LR FGY
Sbjct: 483 EGETSVTE--PAPTRDHTERMLRGFGYP 508
>gnl|CDD|218603 pfam05482, Serendipity_A, Serendipity locus alpha protein (SRY-A).
The Drosophila serendipity alpha (sry alpha) gene is
specifically transcribed at the blastoderm stage, from
nuclear cycle 11 to the onset of gastrulation, in all
somatic nuclei. SRY-A is required for the
cellularisation of the embryo and is involved in the
localisation of the actin filaments just prior to and
during plasma membrane invagination.
Length = 549
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 269 TEKFKEKTQAEWC-EIFDNTDACVTPVLSLSQATSHPHN 306
++ K KT C ++ DAC+ P L L ++ H+
Sbjct: 309 SQDVKTKTIVRSCLASLESLDACIVPALQLQTSSLASHH 347
>gnl|CDD|221701 pfam12672, DUF3793, Protein of unknown function (DUF3793). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 211 amino
acids in length. There are two conserved sequence
motifs: PHE and LGYP.
Length = 176
Score = 28.3 bits (64), Expect = 5.6
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 348 TREVLRHFGYSDANIEELIRE 368
RE L+ GY ++E+++
Sbjct: 75 VREFLKKLGYEPFSLEDILEH 95
>gnl|CDD|191602 pfam06752, E_Pc_C, Enhancer of Polycomb C-terminus. This family
represents the C-terminus of eukaryotic enhancer of
polycomb proteins, which have roles in heterochromatin
formation. This family contains several conserved
motifs.
Length = 230
Score = 28.0 bits (62), Expect = 6.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 311 SFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRH 354
+F+P+ G A +P+ L R+PG + PA G + +VL
Sbjct: 103 TFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPG 146
>gnl|CDD|177555 PHA03193, PHA03193, tegument protein VP11/12; Provisional.
Length = 594
Score = 28.5 bits (63), Expect = 6.8
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 316 RAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTR 349
+ PA + P + +I A G
Sbjct: 502 KGDAECPAAQDAAAILPASFQIENGGAADGSGLA 535
>gnl|CDD|222897 PHA02593, 62, clamp loader small subunit; Provisional.
Length = 191
Score = 27.8 bits (62), Expect = 7.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 249 LGMTEEELPQHEVE------TGRAKLTEKFKEKTQAEWCEIFDN 286
L +E+L +HE+ +L + FKEK + E I D+
Sbjct: 5 LFDDDEQLNEHEIAWRSKDWDAVQELADSFKEKAENELFAIIDD 48
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 27.3 bits (61), Expect = 7.9
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 151 AADFGGGGLMCALGIVMALFERSKSGRGQVIDCNMVEGSAYLGS----WLTRTQDTFL 204
A D GGGL AL + SG G ID + V L + Q L
Sbjct: 59 AHDITGGGLAGALAEMAP-----ASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGL 111
>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
Length = 387
Score = 28.2 bits (63), Expect = 8.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 2 ALKGITVLEFAGLAPAP 18
ALKG+ VLEF G+ P P
Sbjct: 53 ALKGMDVLEFGGIEPNP 69
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 28.4 bits (64), Expect = 8.9
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 300 ATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVH---TREVLRHFG 356
AT + H + I + V + L+RT P VH T E+L+ F
Sbjct: 734 ATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFNEQ------TLPEVHFRTTDEMLQEFS 787
Query: 357 YSDANIEELIREDVIEETIEMNSKL 381
+ EE E V+E T ++ +
Sbjct: 788 FLG---EEKAYEIVVENTNKIADMI 809
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.413
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,642,987
Number of extensions: 1904887
Number of successful extensions: 1708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 26
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)