RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1367
(381 letters)
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 359
Score = 259 bits (662), Expect = 1e-84
Identities = 156/359 (43%), Positives = 213/359 (59%), Gaps = 9/359 (2%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK-HGAQPFVQDTVGYGKKSLCINLKK 60
L G+ V+E AG+ P P MIL + GA V+RID+ +D + ++ + +LK
Sbjct: 3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKS 62
Query: 61 AKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDGPYSSM 120
+GL + L ++DV++E +R GV E+L LGP+ K N RLIYAR++G+GQ GP S
Sbjct: 63 DQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQ 122
Query: 121 AGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKSGRGQV 180
AGHDINY+ L+GIL +G + P PP NL DFGGG + +GI+ AL+ER SG+GQV
Sbjct: 123 AGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQV 182
Query: 181 IDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVGALESQ 240
+D MV+GS+ L + + T +W RG N+LDGGA +YDTYE DGR++AVGA+E Q
Sbjct: 183 VDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQ 242
Query: 241 FYAQLLAGLGMTEEELPQH----EVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLS 296
FYA +LAGLG+ ELP RA LTE F + W +F N+DACVTPVL+
Sbjct: 243 FYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLA 302
Query: 297 LSQATSHPHNVHRGSFIPNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHF 355
+ + PH + R +F G P PAPR SRT + PA + VL +
Sbjct: 303 FGEVHNEPHIIERNTFYEAN-GGWQPMPAPRFSRTASSQP---RPPAATIDIEAVLTDW 357
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 208 bits (529), Expect = 4e-64
Identities = 98/418 (23%), Positives = 163/418 (38%), Gaps = 53/418 (12%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRIDK--------HGAQPFVQDTVGY----- 49
L+GI VL+F G+ P C +L FGA VI+I++ H + Y
Sbjct: 5 LQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLN 64
Query: 50 -GKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +N K A+G VM+ L ++D+++E F G ++ + + + + NPRLI+ +
Sbjct: 65 SNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSI 124
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMA 168
G+ + PY ++ ++ G S G+ + P A G+ +G++ A
Sbjct: 125 KGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAA-ALGDSNTGMHLLIGLLAA 183
Query: 169 LFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQD-----------------TFLWDKPRGE 211
L R K+GRGQ + +M + L R Q TF PRG
Sbjct: 184 LLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVPRGG 243
Query: 212 NLLDGGAHFY----DTYETKDGRFMAVGALESQFYAQLLAGLG---------MTEEELPQ 258
N GG + +ET ++ ++ Q + +G + Q
Sbjct: 244 NAGGGGQPGWILKCKGWETDPNAYI-YFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQ 302
Query: 259 HEVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNVHRGSFI----P 314
+ A++ + + E D PVLS+ + + P GS + P
Sbjct: 303 PHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQP 362
Query: 315 NRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIEELIREDVIE 372
R + + S K P G HT VL+ GYSD I + + IE
Sbjct: 363 LRGKYLTVGCPMKFSAFTPDIK---AAPLLGEHTAAVLQELGYSDDEIAAMKQNHAIE 417
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 196 bits (499), Expect = 2e-59
Identities = 87/428 (20%), Positives = 151/428 (35%), Gaps = 63/428 (14%)
Query: 3 LKGITVLEFAGLAPAPFCGMILNEFGATVIRI--------------DKHGAQPFVQDTVG 48
L GI VL+F + P C ++ GA VI+I DK
Sbjct: 4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFN 63
Query: 49 YGKKSLCINLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARL 108
K+S+ +++K +G +++ + ++DV++E F G ++++ + + + NPR+I A +
Sbjct: 64 CNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASV 123
Query: 109 SGYGQDGPYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMA 168
GY + + ++ G + G+ + PT A G+ +GI+ A
Sbjct: 124 KGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGA-ALGDSNSGMHLMIGILAA 182
Query: 169 LFERSKSGRGQVIDCNMVEGSAYLGSWLTRTQDTF------------------------- 203
L R K+GRGQ + M + L R Q
Sbjct: 183 LEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDGNPL 242
Query: 204 ----LWDKPRGENLLDGGAH---FYDTYETKDGRFMAVGALESQFYAQLLAGLGMTE--- 253
+ PRG N GG D + + + Q+ + E
Sbjct: 243 SFDNITSVPRGGNAGGGGQPGWMLKCKGWETDADSYVYFTIAANMWPQICDMIDKPEWKD 302
Query: 254 ------EELPQHEVETGRAKLTEKFKEKTQAEWCEIFDNTDACVTPVLSLSQATSHPHNV 307
E ++ + + KF +K + E E PV+S+ + P
Sbjct: 303 DPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHDPSLQ 362
Query: 308 HRGSFI----PNRAGVVAPAPAPRLSRTPGTSKITEHNPAPGVHTREVLRHFGYSDANIE 363
G+ + R + + S P G HT EVL+ G DA I+
Sbjct: 363 KVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEIT---RAPLLGEHTDEVLKELGLDDAKIK 419
Query: 364 ELIREDVI 371
EL + V+
Sbjct: 420 ELHAKQVV 427
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 171 bits (434), Expect = 3e-50
Identities = 85/393 (21%), Positives = 141/393 (35%), Gaps = 25/393 (6%)
Query: 2 ALKGITVLEFAGLAPAPFCGMILNEFGATVIRIDKHG------AQPFVQDTVGYGKKSLC 55
L G+ V+ PF G + E+GA VI I+ QP +L
Sbjct: 8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALS 67
Query: 56 INLKKAKGLSVMKNLANQSDVILEPFRKGVMEKLQLGPDVLCKSNPRLIYARLSGYGQDG 115
+N+ K +G L +D+ +E + + + +VL + NP+L+ A LSG+GQ G
Sbjct: 68 LNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYG 127
Query: 116 PYSSMAGHDINYLGLSGILSLLGWRNRNPTPPCNLAADFGGGGLMCALGIVMALFERSKS 175
N + + L+ + + P GL + AL + ++
Sbjct: 128 TEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRET 187
Query: 176 GRGQVIDCNMVEGSAYLGSWLTRTQDTFLWDKPRGENLLDGGAHFYDTYETKDGRFMAVG 235
G+G+ ID M E +G + PR D Y+ DG +
Sbjct: 188 GKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMEL 247
Query: 236 ALESQFYAQLLAGLGMTEEELPQHEVETGRA-------------KLTEKFKEKTQAEWCE 282
+Q P+ T KL T AE E
Sbjct: 248 VGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKE 307
Query: 283 IFDNTDACVTPVLSLSQATSHPHNVHRGSFI----PNRAGVVAPAPAPRLSRTPGTSKIT 338
F + VL++ + S+P V R S + P P+ PG +I
Sbjct: 308 RFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPG--QIW 365
Query: 339 EHNPAPGVHTREVLRHFGYSDANIEELIREDVI 371
P+ G+ T +L++ GYS+ +I+EL+ + +
Sbjct: 366 RGMPSHGMDTAAILKNIGYSENDIQELVSKGLA 398
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.1 bits (58), Expect = 4.0
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 340 HNPAPGVHTREVLRHFGYSDANIEELIREDVIEETIEMNS 379
H PG+ L +G SD ++ ++ + +E IE S
Sbjct: 327 HGIKPGLTRYFKLSTYGLSDEEVDYVL--NAFKEIIEKYS 364
>d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF
{Pseudomonas fluorescens [TaxId: 294]}
Length = 150
Score = 25.1 bits (54), Expect = 9.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 243 AQLLAGLGMTEEELPQHEVETGRAKL 268
A+LL LG+++ P G +
Sbjct: 3 AELLKALGISDSTFPIEIYHNGPRHV 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.413
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,415,613
Number of extensions: 65890
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 7
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)