BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13670
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 14/217 (6%)
Query: 169 ARRTVQAQDRCVENRFHANIDPSKN-KEAESELNRVIKKSMFEKMKIVGQFNLGFIIV-- 225
++R +AQ+ ++N+ D ++ ++ E L + K+ F+KM++VGQFNLGFIIV
Sbjct: 1 SKRKSEAQENIIKNK-----DELEDFEQGEKYLTLTVSKNDFKKMEVVGQFNLGFIIVTR 55
Query: 226 KYDS--DLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFY 283
K D+ DLFI+DQHA+DEKYNFETLQ T+ KSQKL++PQ + L+ I++ ++ DNLPVF
Sbjct: 56 KVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVLDNLPVFE 115
Query: 284 KNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST--EHCRPSRIR 339
KNGF+ D ++ V L SLP SK T D EL+ +++ ++ R S+IR
Sbjct: 116 KNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIR 175
Query: 340 AMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
+MFA RACR S+MIG+ L+ MT +V N+ +D+PW
Sbjct: 176 SMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPW 212
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 14/217 (6%)
Query: 169 ARRTVQAQDRCVENRFHANIDPSKN-KEAESELNRVIKKSMFEKMKIVGQFNLGFIIV-- 225
++R +AQ+ ++N+ D ++ ++ E L + K+ F+KM++VGQFNLGFIIV
Sbjct: 2 SKRKSEAQENIIKNK-----DELEDFEQGEKYLTLTVSKNDFKKMEVVGQFNLGFIIVTR 56
Query: 226 KYDS--DLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFY 283
K D+ DLFI+DQHA+DEKYNFETLQ T+ KSQKL++PQ + L+ I++ ++ DNLPVF
Sbjct: 57 KVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVLDNLPVFE 116
Query: 284 KNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST--EHCRPSRIR 339
KNGF+ D ++ V L SLP SK T D EL+ +++ ++ R S+IR
Sbjct: 117 KNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIR 176
Query: 340 AMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
+MFA RACR S+MIG+ L+ MT +V N+ +D+PW
Sbjct: 177 SMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPW 213
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 1 MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
+LVNEVYH +N HQYPF++LNI + + VD+NVTPDKRQI + EKLLLA +K +
Sbjct: 303 CRLVNEVYHXYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGX 362
Query: 61 Y 61
+
Sbjct: 363 F 363
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
+LVNEVYH +N HQYPF++LNI + + VD+NVTPDKRQI + EKLLLA +K + +
Sbjct: 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMF 363
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
+LVNEVYH +N HQYPF++LNI + + VD+NVTPDKRQI + EKLLLA +K + +
Sbjct: 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMF 363
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 1 MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
+K NEVY FNN Q+P + LN+E+ +DVNVTPDKR I + +E+ ++ K ++D
Sbjct: 298 LKCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDY 357
Query: 61 Y 61
Y
Sbjct: 358 Y 358
>pdb|3NCV|A Chain A, Ngol
pdb|3NCV|B Chain B, Ngol
Length = 220
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 222 FIIVKYDSDLFIIDQHATDEKYNFETL----QKTTLIKSQKLVVPQNLHLTKINQCILKD 277
+I+ + + L +ID HA E+ N+E + Q+ ++SQ L++P + L D
Sbjct: 40 YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALAD 99
Query: 278 NLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEEL----LFMLQHTNSTEHC 333
+ G E S GN L + LG+ D+ L L L S++
Sbjct: 100 HAETLAGFGLEL---SDMGGNTLAVR---AAPVMLGKSDVVSLARDVLGELAQVGSSQTI 153
Query: 334 RPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNM 369
R + A+ +C S+ GR L++ EM L+R+M
Sbjct: 154 ASHENR-ILATMSCHGSIRAGRRLTLPEMNALLRDM 188
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 2 KLVNEVYHQF---NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHI 57
K + VY + N H PF+ L++E+S +VDVNV P K ++ HE+ +L V+ HI
Sbjct: 275 KAIETVYAAYLPKNTH--PFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHI 331
>pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
Length = 197
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 212 MKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETL-QKTTLIKS--QKLVVPQNLHLT 268
M +GQ + +I+ + ++ L+IIDQHA E+ +E +K ++ Q+++VP H +
Sbjct: 9 MYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYS 68
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 95 EEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGS 146
E++ T+ V + S ++ P+ P +PD + ++++ RLQGS
Sbjct: 173 EDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGS 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,525,079
Number of Sequences: 62578
Number of extensions: 413743
Number of successful extensions: 1059
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 12
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)