Query psy13670
Match_columns 380
No_of_seqs 252 out of 1503
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:26:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdg_A DNA mismatch repair pro 100.0 6.7E-45 2.3E-49 329.9 17.9 170 207-380 4-176 (197)
2 3ncv_A DNA mismatch repair pro 100.0 2.4E-44 8E-49 330.8 18.8 168 207-380 25-199 (220)
3 1x9z_A DNA mismatch repair pro 100.0 1.9E-36 6.6E-41 272.5 15.8 156 208-380 5-163 (188)
4 3na3_A DNA mismatch repair pro 99.6 1.1E-15 3.6E-20 148.9 4.1 62 2-63 275-337 (348)
5 3h4l_A DNA mismatch repair pro 99.5 2.4E-15 8.2E-20 147.6 5.7 62 2-63 299-360 (367)
6 1h7s_A PMS1 protein homolog 2; 99.5 6E-15 2.1E-19 145.0 6.3 61 2-62 304-364 (365)
7 1b63_A MUTL; DNA mismatch repa 99.5 1.2E-14 4.1E-19 141.4 6.1 61 2-62 272-333 (333)
8 3rbn_A DNA mismatch repair pro 94.1 0.45 1.5E-05 44.4 11.5 113 208-325 57-194 (284)
9 3h0d_A CTSR; protein DNA compl 47.6 43 0.0015 28.1 6.4 45 261-306 30-74 (155)
10 2j9u_A VPS28, vacuolar protein 36.9 98 0.0034 23.7 6.4 33 336-371 54-86 (96)
11 2j9w_A VPS28, VPS28-PROV prote 31.9 1.4E+02 0.0047 23.1 6.6 32 337-371 60-91 (102)
No 1
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=6.7e-45 Score=329.91 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=145.5
Q ss_pred cccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh---cCCCccccccceeeecCHHHHHHHHHhHHHHH
Q psy13670 207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT---TLIKSQKLVVPQNLHLTKINQCILKDNLPVFY 283 (380)
Q Consensus 207 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~---~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~ 283 (380)
..++.+++|||++++|||++.+++|||||||||||||+||+|+++ ....+|+||+|+.++|++.|..++.++.+.|+
T Consensus 4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~ls~~e~~~l~~~~~~l~ 83 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE 83 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHH
T ss_pred ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEecCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999986 45789999999999999999999999999999
Q ss_pred hCCeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHH
Q psy13670 284 KNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMT 363 (380)
Q Consensus 284 ~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~ 363 (380)
+|||+++ .+|++++.|++||.++........+.++++.+.+.. . .......+++++++|||+|||+|+.||.+||+
T Consensus 84 ~~Gf~~e--~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~-~-~~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~ 159 (197)
T 3kdg_A 84 SVGVFLE--SFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSK-N-IDIKKLREEAAIMMSCKGSIKANRHLRNDEIK 159 (197)
T ss_dssp HTTCCCE--ECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHS-S-CCHHHHHHHHHHHHHHCC----CCCCCHHHHH
T ss_pred hCCCEEE--ECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHhhHhhccCCCCCCHHHHH
Confidence 9999998 468899999999999875544556677777776544 1 11223445689999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCC
Q psy13670 364 GLVRNMGRIDQPWVSMG 380 (380)
Q Consensus 364 ~Ll~~L~~c~~P~~CPH 380 (380)
+||++|++|++||+|||
T Consensus 160 ~Ll~~L~~~~~p~~CpH 176 (197)
T 3kdg_A 160 ALLDDLRSTSDPFTCPH 176 (197)
T ss_dssp HHHHHHHHSSCTTBCTT
T ss_pred HHHHHHHcCCCCCcCCC
Confidence 99999999999999999
No 2
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.4e-44 Score=330.78 Aligned_cols=168 Identities=20% Similarity=0.310 Sum_probs=144.4
Q ss_pred cccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh----cCCCccccccceeeecCHHHHHHHHHhHHHH
Q psy13670 207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT----TLIKSQKLVVPQNLHLTKINQCILKDNLPVF 282 (380)
Q Consensus 207 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~----~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L 282 (380)
..++.+++|||++++|||++.+++|||||||||||||+||+|+++ ....+|+||+|+.++|++.|..++.++.+.|
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~Ls~~e~~~l~~~~~~L 104 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 104 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEEcCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999984 3578999999999999999999999999999
Q ss_pred HhCCeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCC---CCCCChHHHHHHHHHHHhhhhhhcCCCCCH
Q psy13670 283 YKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNS---TEHCRPSRIRAMFASRACRKSVMIGRALSV 359 (380)
Q Consensus 283 ~~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~---~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~ 359 (380)
++|||+++ .+|++++.|++||.++. ..++.+++.++++... .....+..++++++++|||+|||+|+.||.
T Consensus 105 ~~lGf~ie--~fg~~~v~V~~vP~~l~----~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr~AIk~g~~Ls~ 178 (220)
T 3ncv_A 105 AGFGLELS--DMGGNTLAVRAAPVMLG----KSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTL 178 (220)
T ss_dssp HHTTCEEE--CCSTTEEEEEEEETTSC----CSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTCSSSCSSCCCCH
T ss_pred HhCCCEEE--ECCCCEEEEEEcCcccC----CCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 99999998 56889999999999876 3455555544443211 111234567789999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCC
Q psy13670 360 GEMTGLVRNMGRIDQPWVSMG 380 (380)
Q Consensus 360 ~E~~~Ll~~L~~c~~P~~CPH 380 (380)
+||++||++|++|++||+|||
T Consensus 179 ~Em~~Ll~~L~~~~~P~~CPH 199 (220)
T 3ncv_A 179 PEMNALLRDMENTPRSNQCNH 199 (220)
T ss_dssp HHHHHHHHHHHTSTTTTBCTT
T ss_pred HHHHHHHHHHHhCCCCCcCCC
Confidence 999999999999999999999
No 3
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=100.00 E-value=1.9e-36 Score=272.48 Aligned_cols=156 Identities=11% Similarity=0.149 Sum_probs=132.5
Q ss_pred ccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh--cCCCccccccceeeecCHHHHHHHHHhHHHHHhC
Q psy13670 208 MFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT--TLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKN 285 (380)
Q Consensus 208 ~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~--~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~l 285 (380)
..+.++++||++++|||++.+++||||||||| |||+||++++. ....+|+||+|+.++|++.|...+.++.+.|+++
T Consensus 5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~ 83 (188)
T 1x9z_A 5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAEL 83 (188)
T ss_dssp -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred cCCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhC
Confidence 34678999999999999999999999999999 99999999976 3577999999999999999999999999999999
Q ss_pred CeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcC-CCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHHH
Q psy13670 286 GFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTN-STEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTG 364 (380)
Q Consensus 286 Gf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~-~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~~ 364 (380)
||+++. +|++ +.|++||.++. ..++.+++.++++.. .+... ..+++++++|||+ ||+|+.||.+||++
T Consensus 84 Gf~~e~--~g~~-~~v~~vP~~l~----~~~~~~li~~ll~~l~~~~~~---~~~~~~~~~AC~~-ik~g~~Ls~~em~~ 152 (188)
T 1x9z_A 84 GIDFQS--DAQH-VTIRAVPLPLR----QQNLQILIPELIGYLAKQSVF---EPGNIAQWIARNL-MSEHAQWSMAQAIT 152 (188)
T ss_dssp TCEEEE--CSSE-EEEEEEEGGGT----TSCHHHHHHHHHHHHTTCSSC---CHHHHHHHHHHTT-SCCCCSCCHHHHHH
T ss_pred CcEEEE--cCCc-EEEEecCchhc----ccCHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHhh-CccCCCCCHHHHHH
Confidence 999994 5777 99999999976 344555554443321 11111 1267999999999 99999999999999
Q ss_pred HHHHHhccCCCCCCCC
Q psy13670 365 LVRNMGRIDQPWVSMG 380 (380)
Q Consensus 365 Ll~~L~~c~~P~~CPH 380 (380)
||++|++| |||
T Consensus 153 Ll~~L~~~-----CpH 163 (188)
T 1x9z_A 153 LLADVERL-----CPQ 163 (188)
T ss_dssp HHHHHHHH-----CHH
T ss_pred HHHHHHhH-----CCC
Confidence 99999999 998
No 4
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=148.88 Aligned_cols=62 Identities=34% Similarity=0.568 Sum_probs=38.0
Q ss_pred cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhcc
Q psy13670 2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAI 63 (380)
Q Consensus 2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~ 63 (380)
|+|++||+.+++ ++||++||+|+|||+.|||||||+|+||+|.+|+.|+++|+.+|+++|..
T Consensus 275 ~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~~l~~ 337 (348)
T 3na3_A 275 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 337 (348)
T ss_dssp HHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHHHHHHHHHhc
Confidence 789999999998 99999999999999999999999999999999999999999999999986
No 5
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.4e-15 Score=147.59 Aligned_cols=62 Identities=44% Similarity=0.746 Sum_probs=60.6
Q ss_pred cHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhcc
Q psy13670 2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAI 63 (380)
Q Consensus 2 ~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~ 63 (380)
|+|+++|+.+++++||++||+|+|||+.|||||||+|+||+|++|+.|+++|+.+|+++|..
T Consensus 299 ~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~ 360 (367)
T 3h4l_A 299 KCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNR 360 (367)
T ss_dssp HHHHHHHHTTCSSCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEEEcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999986
No 6
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.52 E-value=6e-15 Score=144.98 Aligned_cols=61 Identities=56% Similarity=0.996 Sum_probs=53.6
Q ss_pred cHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670 2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA 62 (380)
Q Consensus 2 ~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~ 62 (380)
|+|+++|+.+++++||+++|+|++||+.|||||||+|+||+|++++.|+++|+.+|+++|+
T Consensus 304 ~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp HHHHHHHHTTCTTCBCCEEEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCccCCcEEEEEEEeChHHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999999986
No 7
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.50 E-value=1.2e-14 Score=141.37 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=58.8
Q ss_pred cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670 2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA 62 (380)
Q Consensus 2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~ 62 (380)
|+|+++|+.+++ ++||+|||+|+|||+.|||||||+|+||+|++++.|+++|+++|+++|.
T Consensus 272 ~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~~~l~ 333 (333)
T 1b63_A 272 HAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 333 (333)
T ss_dssp HHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHHHHHhC
Confidence 689999999988 9999999999999999999999999999999999999999999999873
No 8
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=94.10 E-value=0.45 Score=44.35 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=73.4
Q ss_pred ccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcC-CCccccccceee-e-------------------
Q psy13670 208 MFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTL-IKSQKLVVPQNL-H------------------- 266 (380)
Q Consensus 208 ~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~-~~sQ~LL~P~~l-~------------------- 266 (380)
.+.+..+||.++.++.+++.+..|||||-.+.-+-.-|...+.+.+ ...-.|-.|+.+ +
T Consensus 57 i~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~P~~L~dLl~~al~~~~~~~~e~d~~ 136 (284)
T 3rbn_A 57 MLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGP 136 (284)
T ss_dssp HHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEHHHHHHHHHTSGGGTCCTTSCC
T ss_pred HHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEeeCCCCCHHHHHHHHhhcccccCCccccc
Confidence 4567899999999999999999999999999988888888877632 222223233321 0
Q ss_pred ---cCHHHHHHHHHhHHHHHhCCeEEEEecCCCCeEEEEecCCCCCccCC-hhhHHHHHHHHh
Q psy13670 267 ---LTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLG-REDIEELLFMLQ 325 (380)
Q Consensus 267 ---l~~~e~~~l~~~~~~L~~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~-~~~l~~ll~~l~ 325 (380)
+...-...|.++.+.|..+ |.+++.+.| .+.++|.++..... -..+-.++-.|.
T Consensus 137 ~~~~~e~i~~~L~~~~eML~EY-Fsi~Id~~g----~L~slPlLl~~Y~P~l~~LP~FllrL~ 194 (284)
T 3rbn_A 137 KEGLAEYIVEFLKKKAEMLADY-FSLEIDEEG----NLIGLPLLIDNYVPPLEGLPIFILRLA 194 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HCCEECTTS----EEEEEEECSTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-eeEEEeCCC----cEEEechhhcCCCCChHHHHHHHHHHh
Confidence 0111223566666766655 444443332 48899999864332 345666766665
No 9
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=47.56 E-value=43 Score=28.07 Aligned_cols=45 Identities=4% Similarity=0.107 Sum_probs=30.2
Q ss_pred cceeeecCHHHHHHHHHhHHHHHhCCeEEEEecCCCCeEEEEecCC
Q psy13670 261 VPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPM 306 (380)
Q Consensus 261 ~P~~l~l~~~e~~~l~~~~~~L~~lGf~~~~~~~g~~~~~I~~vP~ 306 (380)
..-.|+.-|++..-+..-.=. ..-||-+|...-|++.+.|..|+.
T Consensus 30 LA~~F~CvPSQINYVl~TRFT-~e~GY~VESkRGGGGyIRI~kv~~ 74 (155)
T 3h0d_A 30 IANKFRCVPSQINYVINTRFT-LERGYIVESKRGGGGYIRIMKVKT 74 (155)
T ss_dssp HHHHTTSCTHHHHHHHHHHSS-GGGTEEEEEECSTTCEEEEEEEEE
T ss_pred HHHhcCCChhhceEEEeeeec-CCCceEEEeecCCCceEEEEEecc
Confidence 344566667776544433211 257999997666778999999995
No 10
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=36.89 E-value=98 Score=23.71 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHhc
Q psy13670 336 SRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGR 371 (380)
Q Consensus 336 ~~~~~~la~~ACr~Aik~g~~Ls~~E~~~Ll~~L~~ 371 (380)
.++..++.++ ...++.+.|+.+|+++|+-+|..
T Consensus 54 ~kv~~Wl~~L---n~M~AsdeL~e~q~RqllfDle~ 86 (96)
T 2j9u_A 54 SKLIDWIVRI---NKLSIGDTLTETQIRELLFDLEL 86 (96)
T ss_dssp HHHHHHHHHH---HTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCcccccCCHHHHHHHHHHHHH
Confidence 4555666666 45667899999999999999865
No 11
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=31.89 E-value=1.4e+02 Score=23.12 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHhc
Q psy13670 337 RIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGR 371 (380)
Q Consensus 337 ~~~~~la~~ACr~Aik~g~~Ls~~E~~~Ll~~L~~ 371 (380)
++..++.++ ...++.+.|+.+|+++|+-+|..
T Consensus 60 kv~~Wl~~L---n~M~AsdeL~e~q~RqllfDle~ 91 (102)
T 2j9w_A 60 KVSQWLQKL---SSMSASDELDDSQVRQMLFDLES 91 (102)
T ss_dssp HHHHHHHHH---HTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcccccCCHHHHHHHHHHHHH
Confidence 344555555 55667999999999999999865
Done!