RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13670
         (380 letters)



>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 182

 Score =  108 bits (270), Expect = 1e-28
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 213 KIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETL-QKTTLIKSQKLVVPQNLHLTKIN 271
           +++   +    +++ D ++ ++     +       L      + +Q L++P  L ++   
Sbjct: 5   RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 64

Query: 272 QCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTE 331
           +  L+       + G +F  D     +V + ++P+       +  I EL+  L       
Sbjct: 65  KSALEKAQSALAELGIDFQSD---AQHVTIRAVPLPLRQQNLQILIPELIGYLAK----- 116

Query: 332 HCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRI 372
             +        A    R  +      S+ +   L+ ++ R+
Sbjct: 117 --QSVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERL 155


>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 1   MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
            +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   
Sbjct: 72  CRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGM 131

Query: 61  Y 61
           +
Sbjct: 132 F 132


>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 1   MKLVNEVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITD 59
              + +         Q P  +L +E+    VDVNV P K ++     +L+   +   +  
Sbjct: 53  NHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLS 112

Query: 60  S 60
            
Sbjct: 113 V 113


>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
          catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 254

 Score = 28.3 bits (62), Expect = 1.3
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 1  MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLL 49
          +  V+++Y         F    I++ +    +  +P + +    H  + 
Sbjct: 36 IDRVDDIYRNTAWDNAGFKGYGIQIEQI--RILKSPQEVKPGEKHYNMA 82


>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
           thermophilus [TaxId: 274]}
          Length = 60

 Score = 24.5 bits (54), Expect = 4.9
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 8/38 (21%)

Query: 250 KTTLIKS-------QKLVVPQNLHLTKINQCILKDNLP 280
           K  L+KS       QK  + + L L ++ Q  + ++ P
Sbjct: 5   KVKLVKSPIGYPKDQKAAL-KALGLRRLQQERVLEDTP 41


>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
           faecalis (Streptococcus faecalis) [TaxId: 1351]}
          Length = 353

 Score = 26.5 bits (58), Expect = 6.6
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 313 GREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVR 367
           G  D+ EL+  L         RP   RA++  +A     +  RA+ +  + GL  
Sbjct: 294 GSLDMAELMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYE 348


>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30
           {Escherichia coli [TaxId: 562]}
          Length = 56

 Score = 23.7 bits (52), Expect = 9.2
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 8/38 (21%)

Query: 250 KTTLIKS-------QKLVVPQNLHLTKINQCILKDNLP 280
           K T  +S        K  +   L L +I   + +++ P
Sbjct: 3   KITQTRSAIGRLPKHKATL-LGLGLRRIGHTVEREDTP 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,336,860
Number of extensions: 60743
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 8
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)