BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13674
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131
FQD+D+LQ + INVADIKKLKSVG+CTIKG+QMTTRR + +KG SEAKVDKIKEA K
Sbjct: 23 LFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82
Query: 132 ICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191
+ + FLTA + EKRK VF ITTGS E DK+LGGGIESMAITEAFGEFRTGKTQLSHTL
Sbjct: 83 LIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTL 142
Query: 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220
+TAQLP GY GGK+I++D+ENT P
Sbjct: 143 CVTAQLPG-AGGYPGGKIIFIDTENTFRP 170
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA FAIT GGI DAK
Sbjct: 283 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAK 342
Query: 315 D 315
+
Sbjct: 343 E 343
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131
FQD+D+LQ + INVADIKKLKSVG+CTIKG+QMTTRR + +KG SEAKVDKIKEA K
Sbjct: 23 LFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82
Query: 132 ICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191
+ + FLTA + EKRK VF ITTGS E DK+LGGGIESMAITEAFGEFRTGKTQLSHTL
Sbjct: 83 LIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTL 142
Query: 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220
+TAQLP GY GGK+I++D+ENT P
Sbjct: 143 CVTAQLPG-AGGYPGGKIIFIDTENTFRP 170
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA FAIT GGI DAK
Sbjct: 283 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAK 342
Query: 315 D 315
+
Sbjct: 343 E 343
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 73 FQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132
F ++ LQ I +AD+KKL+ GL T + V R+ + +IKG SEAK DK+ ++
Sbjct: 80 FVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARL 139
Query: 133 CDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLS 192
F+TAA +R ++ +TTGS LD +LGGG+E+ +ITE FGEFRTGK+QL HTL+
Sbjct: 140 VPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199
Query: 193 ITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228
+T Q+P + G GK +Y+D+E T P + +++IA
Sbjct: 200 VTCQIPLDIGGGE-GKCLYIDTEGTFRP-VRLVSIA 233
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
N DPKKP+GGNIMA++STTR+ +KG+G R+ K+ DSP +PEAE +FAI G+ D +
Sbjct: 337 FNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396
Query: 315 D 315
+
Sbjct: 397 E 397
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
++ LQ I +AD+KKL+ GL T + V R+ + +IKG SEAK DK+ ++
Sbjct: 4 IEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPM 63
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
F+TAA +R ++ +TTGS LD +LGGG+E+ +ITE FGEFRTGK+QL HTL++T
Sbjct: 64 GFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 123
Query: 196 QLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228
Q+P + G GK +Y+D+E T P + +++IA
Sbjct: 124 QIPLDIGGGE-GKCLYIDTEGTFRP-VRLVSIA 154
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
N DPKKP GGNIMAH+STTR+ +KG+G R+ K+ DSP +PEAE +FAI G+ D +
Sbjct: 258 FNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 317
Query: 315 D 315
+
Sbjct: 318 E 318
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQ 142
+ A +KL+ G T++ + + + ++ ++ G SE KI +A K + +F A +
Sbjct: 43 VGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFXRADE 102
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
++KR + +I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++ QLP E
Sbjct: 103 YLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQLPPEEG 162
Query: 203 GYTGGKVIYVDSENTLYP 220
G G VI++D+ENT P
Sbjct: 163 GLN-GSVIWIDTENTFRP 179
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 13/95 (13%)
Query: 218 LYPLLNIIAIASLVTLVGSRLPMSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTRIS 277
L+ L N+ IA VT P +F DP +P+GG+I+AH++T R+
Sbjct: 268 LHRLANLYDIAVFVTNQVQARPDAFF-------------GDPTRPIGGHILAHSATLRVY 314
Query: 278 LRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
LRKG+G RIA++ D+P +PE EA+F+IT GI D
Sbjct: 315 LRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEA FAI G+ DAKD
Sbjct: 185 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAXFAINADGVGDAKD 243
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+ HTL++T QLP + RG GK
Sbjct: 2 EIIQITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPID-RGGGEGK 60
Query: 209 VIYVDSENTLYPLLNIIAIASLVTLVGS 236
Y+D+E T P ++A+A L GS
Sbjct: 61 AXYIDTEGTFRP-ERLLAVAERYGLSGS 87
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 89 IKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRK 148
I KL G +++ + + + + +S G + KI + D F TA +V ++R
Sbjct: 25 INKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERM 84
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
V KI+TGS LD +L GGIE+ +TE FGEF +GKTQL H LS+ QLP E +G GK
Sbjct: 85 NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGK 143
Query: 209 VIYVDSENTL 218
+Y+D+E T
Sbjct: 144 AVYIDTEGTF 153
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DP VGG+ + H RI L+K RG RIA++ D+P +PE E +FA+T GI DA++
Sbjct: 266 GDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAEE 324
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 89 IKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRK 148
I KL G +++ + + + + +S G + KI + D F TA +V ++R
Sbjct: 25 INKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERX 84
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
V KI+TGS LD +L GGIE+ TE FGEF +GKTQL H LS+ QLP E +G GK
Sbjct: 85 NVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGK 143
Query: 209 VIYVDSENTL 218
+Y+D+E T
Sbjct: 144 AVYIDTEGTF 153
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DP VGG+ + H RI L+K RG RIA++ D+P +PE E +FA+T GI DA++
Sbjct: 266 GDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAEE 324
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
+I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++ QLP E G G VI+
Sbjct: 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVIW 64
Query: 212 VDSENTLYP 220
+D+ENT P
Sbjct: 65 IDTENTFRP 73
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 264 GGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
GG+I+AH++T R+ LRKG+G RIA++ D+P +PE EA+F+IT GI D
Sbjct: 183 GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 231
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
+I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++ QLP E G G V++
Sbjct: 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVMW 64
Query: 212 VDSENTLYP 220
+D+ENT P
Sbjct: 65 IDTENTFRP 73
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 264 GGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
GG+I+AH++T R+ LRKG+G RIA++ D+P +PE EA+F+IT GI D
Sbjct: 183 GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 231
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL G + T +++ I+G SE K+ +CD F + ++++R
Sbjct: 17 EKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRST 76
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPD----ETRGYT 205
V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q P+ + +
Sbjct: 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS 136
Query: 206 GGKV-----IYVDSENTLYP 220
G+V +Y+D+E T P
Sbjct: 137 KGEVAQPKAVYIDTEGTFRP 156
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 270 EQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 322
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL G + T +++ I+G SE K+ +CD F + ++++R
Sbjct: 14 EKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRST 73
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPD----ETRGYT 205
V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q P+ + +
Sbjct: 74 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS 133
Query: 206 GGKV-----IYVDSENTLYP 220
G+V +Y+D+E T P
Sbjct: 134 KGEVAQPKAVYIDTEGTFRP 153
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+Y SP +P+AEA+F IT GI D
Sbjct: 267 EQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYKSPHLPDAEAIFRITEKGIQD 319
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL G + T +++ I+G SE K+ +CD F + ++++R
Sbjct: 17 EKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRST 76
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPD----ETRGYT 205
V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q P+ + +
Sbjct: 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS 136
Query: 206 GGKV-----IYVDSENTLYP 220
G+V +Y+D++ T P
Sbjct: 137 KGEVAQPKAVYIDTDGTFRP 156
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 270 EQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 322
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 91 KLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQV 150
KL G + T +++ I+G SE K+ A +CD F + +++++R+ V
Sbjct: 18 KLIEGGYLDFMKIATATIGELTDIEGISEKAAAKMIMAARDLCDLGFKSGVELLKQRQSV 77
Query: 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE---------T 201
++++TGSTELD +L GGIES ++TE G F +GKTQ+ H + Q+ ++
Sbjct: 78 WRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVVE 137
Query: 202 RGYTGGKVIYVDSENTLYP 220
K +Y+D+E T P
Sbjct: 138 EELEAPKAVYIDTEGTFRP 156
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 41/53 (77%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+++ HA+T R LRK +G+ R+AK+YDSP +P++EA+F IT GI D
Sbjct: 270 EQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPDSEAVFRITEKGIQD 322
>pdb|1B22|A Chain A, Rad51 (N-Terminal Domain)
Length = 114
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKIC 133
Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI K+
Sbjct: 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82
Query: 134 DNSFLTAAQVVEKRKQVFKITTGSTELDKIL 164
F TA + ++R ++ +ITTGS ELDK+L
Sbjct: 83 PMGFTTATEFHQRRSEIIQITTGSKELDKLL 113
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 212 EQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 264
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 9/93 (9%)
Query: 137 FLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196
F + ++++R V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q
Sbjct: 6 FKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 65
Query: 197 LPD----ETRGYTGGKV-----IYVDSENTLYP 220
P+ + + G+V +Y+D+E T P
Sbjct: 66 NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 98
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 260 KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 214 EQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 266
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 134 DNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
D F + ++++R V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H +
Sbjct: 5 DLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 64
Query: 194 TAQLPD----ETRGYTGGKV-----IYVDSENTLYP 220
Q P+ + + G+V +Y+D+E T P
Sbjct: 65 NLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 100
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYV 212
++TG+ LD +LGGG +T+ +G + +GKT TL++ L +G KV YV
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKT----TLALQTGL------LSGKKVAYV 51
Query: 213 DSENTLYP 220
D+E P
Sbjct: 52 DTEGGFSP 59
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
E + V ++TGS LD LG GGI ITE +G GKT L+ L+I AQ
Sbjct: 47 ESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLA--LAIVAQAQK---- 100
Query: 204 YTGGKVIYVDSENTLYPL 221
GG ++D+E+ L P+
Sbjct: 101 -AGGTCAFIDAEHALDPV 117
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L TL + A E G +
Sbjct: 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE-----GKTCAF 96
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 97 IDAEHALDPI 106
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 67
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 68 IDAEHALDPI 77
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 416
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 417 IDAEHALDPI 426
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 765
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 766 IDAEHALDPI 775
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1062 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1114
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1115 IDAEHALDPI 1124
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1460
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1461 IDAEHALDPI 1470
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1756 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1808
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1809 IDAEHALDPI 1818
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 67
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 68 IDAEHALDPI 77
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 416
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 417 IDAEHALDPI 426
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 765
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 766 IDAEHALDPI 775
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1063 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1115
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1116 IDAEHALDPI 1125
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1412 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1464
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1465 IDAEHALDPI 1474
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 67
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 68 IDAEHALDPI 77
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 416
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 417 IDAEHALDPI 426
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 765
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 766 IDAEHALDPI 775
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T +
Sbjct: 1063 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAF 1115
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 1116 IDAEHALDPI 1125
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L TL + A E G +
Sbjct: 40 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE-----GKTCAF 92
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 93 IDAEHALDPI 102
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
I+TGS LD LG GG+ I E +G +GKT L TL + A E G +
Sbjct: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE-----GKTCAF 93
Query: 212 VDSENTLYPL 221
+D+E+ L P+
Sbjct: 94 IDAEHALDPI 103
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 153 ITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLS-HTLSITAQLPDETRGYTGGKVI 210
I TGS +D G GG I E FG+ +GKT L+ H ++ ++ GG
Sbjct: 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM--------GGVAA 93
Query: 211 YVDSENTLYPL 221
++D+E+ L P+
Sbjct: 94 FIDAEHALDPV 104
>pdb|2JZH|A Chain A, Structure Of Iib Domain Of The Mannose Transporter Of E.
Coli
Length = 173
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
++V + T T++++++ GG++ ++ FR GKTQ+++ +S+
Sbjct: 88 ERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSV 133
>pdb|1VSQ|C Chain C, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|2JZN|C Chain C, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|2JZO|D Chain D, Solution Nmr Structure Of The Non-Productive Complex
Between Iiamannose And Iibmannose Of The Mannose
Transporter Of The E. Coli Phosphotransferase System
Length = 165
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
++V + T T++++++ GG++ ++ FR GKTQ+++ +S+
Sbjct: 80 ERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSV 125
>pdb|3LJ4|A Chain A, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|B Chain B, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|C Chain C, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|D Chain D, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|E Chain E, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|F Chain F, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|G Chain G, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|H Chain H, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|I Chain I, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|J Chain J, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|K Chain K, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|L Chain L, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|1VT0|M Chain M, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|N Chain N, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|O Chain O, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|P Chain P, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|Q Chain Q, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|R Chain R, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|S Chain S, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|T Chain T, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|U Chain U, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|V Chain V, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|W Chain W, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|X Chain X, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
Length = 602
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 125 IKEACMKICDNSFLTAAQVVEKRKQVFK--ITTGSTELDKILGGGIESMAITEAFGEF 180
IK+ + D+ F+ A+ KR++V+K IT + DK L G E + I FGE+
Sbjct: 251 IKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAG-EHIPIVPVFGEW 307
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 125 IKEACMKICDNSFLTAAQVVEKRKQVFK--ITTGSTELDKILGGGIESMAITEAFGEF 180
IK+ + D+ F+ A+ KR++V+K IT + DK L G E + I FGE+
Sbjct: 251 IKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAG-EHIPIVPVFGEW 307
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 245 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 297
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
N F A + +R ++++G LD++ GGG +I A G TGKT L
Sbjct: 232 NIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLL 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,485,321
Number of Sequences: 62578
Number of extensions: 266197
Number of successful extensions: 730
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 79
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)