BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13674
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61880|DMC1_MOUSE Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus
GN=Dmc1 PE=1 SV=1
Length = 340
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 132/162 (81%), Gaps = 3/162 (1%)
Query: 61 VEEED--EEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFS 118
V+EE ++D E FQD+D+LQ + IN+ADIKKLKSVG+CTIKG+QMTTRR + +KG S
Sbjct: 7 VQEESGFQDDEESLFQDIDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKGLS 66
Query: 119 EAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFG 178
EAKV+KIKEA K+ + FLTA Q E+RK VF ITTGS E DK+LGGGIESMAITEAFG
Sbjct: 67 EAKVEKIKEAANKLIEPGFLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAITEAFG 126
Query: 179 EFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
EFRTGKTQLSHTL +TAQLP T GY+GGK+I++D+ENT P
Sbjct: 127 EFRTGKTQLSHTLCVTAQLPG-TGGYSGGKIIFIDTENTFRP 167
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA FAIT GGI DAK
Sbjct: 280 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAK 339
Query: 315 D 315
+
Sbjct: 340 E 340
>sp|Q14565|DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens
GN=DMC1 PE=1 SV=2
Length = 340
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 127/157 (80%), Gaps = 3/157 (1%)
Query: 64 EDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVD 123
+DEE E FQD+D+LQ + INVADIKKLKSVG+CTIKG+QMTTRR + +KG SEAKVD
Sbjct: 14 QDEE--ESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVD 71
Query: 124 KIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTG 183
KIKEA K+ + FLTA + EKRK VF ITTGS E DK+LGGGIESMAITEAFGEFRTG
Sbjct: 72 KIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTG 131
Query: 184 KTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
KTQLSHTL +TAQLP GY GGK+I++D+ENT P
Sbjct: 132 KTQLSHTLCVTAQLPG-AGGYPGGKIIFIDTENTFRP 167
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA FAIT GGI DAK
Sbjct: 280 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAK 339
Query: 315 D 315
+
Sbjct: 340 E 340
>sp|O42634|DMC1_SCHPO Meiotic recombination protein dmc1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dmc1 PE=1 SV=2
Length = 332
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 181/328 (55%), Gaps = 82/328 (25%)
Query: 64 EDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVD 123
E +D + F D++ L + I + DI KLK G+CT++GV M+T+R + +IKGFSEAKVD
Sbjct: 6 EGNDDEQMIFSDIEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVD 65
Query: 124 KIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTG 183
K+KEA K+C +F TA ++ + RK+V+ I+TGS L+ ILGGGI+SM+ITE FGEFR G
Sbjct: 66 KLKEAASKMCPANFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCG 125
Query: 184 KTQLSHTLSITAQL---------------------PDE---------------------T 201
KTQ+SHTL +TAQL PD +
Sbjct: 126 KTQMSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVS 185
Query: 202 RGYTG-------GKVIYVDSENTLYPLLNIIAIASL-----------------VTLVGSR 237
R Y K+ + +E+ Y LL + +I +L + ++ +R
Sbjct: 186 RAYNSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIMLAR 245
Query: 238 LPMSFHITREDLIVFFPLN---ADP----------KKPVGGNIMAHASTTRISLRKGRGE 284
L HI+ E + F N ADP +KPVGG++MAHAS TR+ LRKGRGE
Sbjct: 246 LN---HISEEFNVAVFVTNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGE 302
Query: 285 TRIAKIYDSPDMPEAEAMFAITNGGIAD 312
R+AK+ DSPDMPEAE + IT GGIAD
Sbjct: 303 ERVAKLNDSPDMPEAECSYVITPGGIAD 330
>sp|P50265|DLH1_CANAX Meiotic recombination protein DLH1 OS=Candida albicans GN=DLH1 PE=3
SV=1
Length = 324
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
+D LQ+ IN DI KLKS G+C+I V TTRR +++IKG SE KV+KIKEA KI
Sbjct: 10 IDSLQDQGINAGDINKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAAGKIKKY 69
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
FL A V E R +VF ITTGS + D+ILGGGI+SM+ITE FGEFR GKTQL HTL + A
Sbjct: 70 GFLPATIVAESRTKVFHITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAA 129
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP 220
QLP + G G+V Y+D+E T P
Sbjct: 130 QLPTDMGGGE-GRVAYIDTEGTFRP 153
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
AD +KPVGG+++AHAS TRI LRKGRGE R+AK+ DSP+MPE E ++ I GGI D
Sbjct: 267 ADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGEGGIKD 322
>sp|P25453|DMC1_YEAST Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMC1 PE=1 SV=1
Length = 334
Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
VD LQNY IN +D++KLKS G+ T+ V TTRR + +IKG SE KV+KIKEA KI
Sbjct: 19 VDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQV 78
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
F+ A ++ R++V+ ++TGS +LD ILGGGI +M+ITE FGEFR GKTQ+SHTL +T
Sbjct: 79 GFIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTT 138
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP 220
QLP E G GKV Y+D+E T P
Sbjct: 139 QLPREMGGGE-GKVAYIDTEGTFRP 162
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 256 NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
+AD +KP+GG+++AHAS TRI LRKGRG+ R+AK+ DSPDMPE E ++ I GI D+ D
Sbjct: 275 SADGRKPIGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITDSSD 334
>sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1
Length = 345
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131
F+ +D L IN D+KKL+ G+ T G+ M T++ ++ IKG SEAKVDKI EA K
Sbjct: 28 LFEAIDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEK 87
Query: 132 ICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191
+ + ++T + + KRK V +ITTGS LD++LGGG+E+ AITEAFGEFR+GKTQL+HTL
Sbjct: 88 LVNFGYITGSDALLKRKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTL 147
Query: 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220
++ QLP RG GKV Y+D+E T P
Sbjct: 148 CVSTQLPTNMRG-GNGKVAYIDTEGTFRP 175
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 258 DPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DPKKP GG+++AHA+T R+ RKG+GE RI K++D+P++PEAEA+F IT GGIADAKD
Sbjct: 288 DPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPEAEAVFQITAGGIADAKD 345
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 60 AVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSE 119
AV+++D+E+ + V+ LQ I D+KKL+ GLCT++GV T R+ + QIKG S+
Sbjct: 12 AVQQQDDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGISD 71
Query: 120 AKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGE 179
AKVDKI EA K+ F +A+Q+ +R+++ +IT+GS ELDK+L GGIE+ +ITE +GE
Sbjct: 72 AKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGIETGSITELYGE 131
Query: 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP--LLNI 224
FR+GKTQL HTL +T QLP + +G GK +Y+D+E T P LL I
Sbjct: 132 FRSGKTQLCHTLCVTCQLPMD-QGGGEGKAMYIDAEGTFRPQRLLQI 177
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 255 LNADPK-KPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADA 313
L A P+ KP+GGNIMAHA+TTR++LRKGR E RI K+ SP +PEAEA F I+ G+ D
Sbjct: 281 LFAGPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDC 340
Query: 314 KD 315
KD
Sbjct: 341 KD 342
>sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum
GN=LIM15 PE=2 SV=1
Length = 349
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 73 FQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132
F+ +D L + IN D+KKL+ G+ T G+ M T++ ++ IKG SEAKVDKI EA K+
Sbjct: 33 FESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKL 92
Query: 133 CDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLS 192
+ ++T + V+ KRK V +ITTGS LD++LGGGIE++ ITEAFGEFR+GKTQ++HTL
Sbjct: 93 VNVGYITGSDVLLKRKSVIRITTGSQALDELLGGGIETLQITEAFGEFRSGKTQIAHTLC 152
Query: 193 ITAQLPDETRGYTGGKVIYVDSENTLYP 220
++ QLP G GKV Y+D+E T P
Sbjct: 153 VSTQLPVSMHG-GNGKVAYIDTEGTFRP 179
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
+DPKKP GG+++AHA+T R+ LRKG+GE R+ KI+D+P++PE+EA+F IT GG+ADAKD
Sbjct: 291 SDPKKPAGGHVLAHAATVRLMLRKGKGEQRVCKIFDAPNLPESEAVFQITPGGVADAKD 349
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana
GN=LIM15 PE=1 SV=2
Length = 344
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
+D L IN D+KKL+ G+ T G+ M T++ ++ IKG SEAKVDKI EA KI +
Sbjct: 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNF 90
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
++T + + KRK V KITTG LD +LGGGIE+ AITEAFGEFR+GKTQL+HTL +T
Sbjct: 91 GYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTT 150
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP 220
QLP +G GKV Y+D+E T P
Sbjct: 151 QLPTNMKG-GNGKVAYIDTEGTFRP 174
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 50/59 (84%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
+DPKKP GG+++AHA+T R+ RKG+G+TR+ K+YD+P++ EAEA F IT GGIADAKD
Sbjct: 286 SDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 61 VEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEA 120
+EEE E G ++ LQ I D+KKLK GLCT++ V + R+ + QIKG SEA
Sbjct: 14 IEEEATEHGPF---PIEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEA 70
Query: 121 KVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEF 180
KVDKI EA K+ F +A+Q+ +R ++ ++TTGS ELD+IL GGIE+ +ITE +GEF
Sbjct: 71 KVDKIIEAASKLVPLGFTSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITEMYGEF 130
Query: 181 RTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
R+GKTQL HTL +T QLP + +G GK +Y+D+E T P I+ IA L G+
Sbjct: 131 RSGKTQLCHTLCVTCQLPLD-QGGGEGKALYIDAEGTFRP-QRILQIADRFGLNGA 184
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 257 ADPK-KPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
A P+ KP+GGNIMAHASTTR+ LRKGRGE RI K+ SP + EAEA F I++ G+ D KD
Sbjct: 281 AGPQIKPIGGNIMAHASTTRLFLRKGRGEERICKVISSPCLAEAEARFQISSEGVTDVKD 340
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
V+ LQ I D+KKLK GLCT++ V R+++ QIKG SEAKVDKI EA K+
Sbjct: 28 VEQLQASGIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISEAKVDKIIEAASKLVPL 87
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
F +A+Q+ +R ++ +IT+GS ELDKIL GGIE+ +ITE +GEFR GKTQL HTL +T
Sbjct: 88 GFTSASQLHAQRLEIIQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTC 147
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP--LLNI 224
QLP + +G GK +Y+D+E T P LL I
Sbjct: 148 QLPLD-QGGGEGKAMYIDAEGTFRPQRLLQI 177
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 257 ADPK-KPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
A P+ KP+GGNIMAHASTTR++LRKGR E RI K+ SP + EAEA F I+ G+ D KD
Sbjct: 283 AGPQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTDVKD 342
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILA 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q2KJ94|RAD51_BOVIN DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1
Length = 339
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILT 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51
PE=2 SV=1
Length = 339
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELISIKGISEAKADKILT 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
Query: 64 EDEEDGEEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAK 121
E E EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK
Sbjct: 8 EAEATEEEHFGPQAISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAK 67
Query: 122 VDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFR 181
+KI K+ F TA + ++R ++ +I+TGS ELDK+L GG+E+ +ITE FGEFR
Sbjct: 68 AEKILAEAAKLVPMGFTTATEFHQRRSEIIQISTGSKELDKLLQGGVETGSITEMFGEFR 127
Query: 182 TGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
TGKTQL HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 128 TGKTQLCHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 180
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 278 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 336
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1
SV=1
Length = 339
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILT 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
++ LQ I D+KKLK GL T++ V T R+ + QIKG SEAK DKI EA KI
Sbjct: 26 IEQLQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASKIVPL 85
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
F +A+Q+ +R ++ ++TTGS ELDKIL GGIE+ +ITE +GEFR+GKTQL HT +T
Sbjct: 86 GFTSASQLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTC 145
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP--LLNI 224
QLP + +G GK +Y+D+E T P LL I
Sbjct: 146 QLPLD-QGGGEGKALYIDAEGTFRPQRLLQI 175
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 257 ADPK-KPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
A P+ KP+GGNIMAHASTTR++LRKGRGE RI K+ SP + EAEA F + + GIAD KD
Sbjct: 281 AGPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQLASEGIADVKD 340
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F + + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPEPISRLEQCGINANDVKKLEEAGYHTVESVAHAPKKELLNIKGISEAKADKILA 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQL
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQL 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAK+
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKE 339
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus
GN=RAD51 PE=2 SV=1
Length = 339
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q V L+ IN D+KKL+ G T + V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPVSRLEQCGINANDVKKLEEAGFHTEEAVAYAPKKELINIKGISEAKADKILT 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 281 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51
PE=2 SV=1
Length = 339
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ I+ D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 17 EESFGPQPISRLEQCGISANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILA 76
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+
Sbjct: 77 EAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 137 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 183
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI K+YDSP +PEAEAMFAI G+ DAK
Sbjct: 279 FTADPKKPIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEAEAMFAINADGVGDAK 338
Query: 315 D 315
D
Sbjct: 339 D 339
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-b
PE=2 SV=1
Length = 336
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Query: 70 EEFF--QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
EE F Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK +KI
Sbjct: 14 EENFGPQAITRLEQCGINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAKAEKILA 73
Query: 128 ACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
K+ F TA + ++R ++ +I TGS ELDK+L GGIE+ +ITE FGEFRTGKTQL
Sbjct: 74 EAAKLVPMGFTTATEFHQRRSEIIQIGTGSKELDKLLQGGIETGSITEMFGEFRTGKTQL 133
Query: 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
HTL++T QLP + RG GK +Y+D+E T P ++A+A L GS
Sbjct: 134 CHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGS 180
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DAKD
Sbjct: 278 ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 336
>sp|P25454|RAD51_YEAST DNA repair protein RAD51 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD51 PE=1 SV=1
Length = 400
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 73 FQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132
F ++ LQ I +AD+KKL+ GL T + V R+ + +IKG SEAK DK+ ++
Sbjct: 80 FVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARL 139
Query: 133 CDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLS 192
F+TAA +R ++ +TTGS LD +LGGG+E+ +ITE FGEFRTGK+QL HTL+
Sbjct: 140 VPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199
Query: 193 ITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228
+T Q+P + G GK +Y+D+E T P + +++IA
Sbjct: 200 VTCQIPLDIGGGE-GKCLYIDTEGTFRP-VRLVSIA 233
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
N DPKKP+GGNIMAH+STTR+ +KG+G R+ K+ DSP +PEAE +FAI G+ D +
Sbjct: 337 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396
Query: 315 D 315
+
Sbjct: 397 E 397
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 4/172 (2%)
Query: 66 EEDGEEFFQDVDI--LQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVD 123
E+D E F + + L+ + I+ +D KKL G T++ + T ++++ +KG SEAK D
Sbjct: 13 EDDMGEAFGPLPVSKLEEFGISSSDCKKLAESGYNTVESIAFTPKKQLLLVKGVSEAKAD 72
Query: 124 KIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTG 183
KI ++ F TA + +R ++ ITTGS LD ILGGG+E+ +ITE +GEFRTG
Sbjct: 73 KILAEAARLVPMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTG 132
Query: 184 KTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVG 235
K+QL HTL++T QLP + G GK +Y+D+ENT P ++A+A L G
Sbjct: 133 KSQLCHTLAVTCQLPVDMGGGE-GKCLYIDTENTFRP-TRLLAVAERFGLNG 182
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 47/61 (77%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
AD KKP+GGNI+AHASTTR+SLRKGRG RI +I DSP +PEA+A+FAI GI D
Sbjct: 279 FTADAKKPIGGNIVAHASTTRLSLRKGRGNQRICRIADSPCLPEADAVFAIGPEGIIDPV 338
Query: 315 D 315
D
Sbjct: 339 D 339
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp51 PE=1 SV=1
Length = 365
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Query: 61 VEEEDEED-GEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSE 119
V +DEED + +L+ I +DIKK+ G T++ + T +R++ IKG SE
Sbjct: 31 VNVQDEEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISE 90
Query: 120 AKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGE 179
AK DK+ K+ F TA + +R ++ ITTGS +LD +L GG+E+ +ITE FGE
Sbjct: 91 AKADKLLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGE 150
Query: 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRL 238
FRTGK+Q+ HTL++T QLP + G GK +Y+D+E T P + ++A+A L G +
Sbjct: 151 FRTGKSQICHTLAVTCQLPIDMGGGE-GKCLYIDTEGTFRP-VRLLAVADRYGLNGEEV 207
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
N DPKKP+GGNI+AH+STTR+SLRKGRGE RI KIYDSP +PE+EA+FAI + G+ D K
Sbjct: 300 FNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGDPK 359
Query: 315 D 315
+
Sbjct: 360 E 360
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 83 NINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQ 142
+I DIK L+ L T++ V T++++ I G KV++I K+ FL+A
Sbjct: 29 SITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSART 88
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
+ R V +++TGS ELDK+LGGGIE+ +ITE FGEFR GKTQL HTL++T QLP +
Sbjct: 89 FYQMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQK 148
Query: 203 GYTGGKVIYVDSENTLYP 220
G GK +Y+D+ENT P
Sbjct: 149 GGE-GKCMYIDTENTFRP 165
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 254 PLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADA 313
P D KKP+GG+IMAH+STTR+ LRKG+GETRI KIYDSP +PE+EAMFAI GI DA
Sbjct: 274 PGMFDAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESEAMFAILPDGIGDA 333
Query: 314 KD 315
++
Sbjct: 334 RE 335
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Query: 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
D+D+ + I KLK G T++ V + +++++I G SE + +I EA K+
Sbjct: 23 DIDVEELEGIGRVTGAKLKEKGYYTVRDVAYASVKELAEIVG-SEERAQQIVEAARKMLG 81
Query: 135 -NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
+SF++A +V E+RK++ +I+TG LD++LGGGIE+ A+TE GEF +GKTQL H L++
Sbjct: 82 LHSFISALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAV 141
Query: 194 TAQLPDETRGYTGGKVIYVDSENTLYP 220
QLP E RG G K IY+D+ENT P
Sbjct: 142 MVQLP-EDRGGLGAKAIYIDTENTFRP 167
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF +P +P GGNI+AH +T R+ LRK + RIAKI+DSP PE E F IT G+
Sbjct: 274 VFF---GNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 330
Query: 311 AD 312
D
Sbjct: 331 VD 332
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 3/147 (2%)
Query: 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
DVD+ + I KLK G T++ + + +++++I G +E + +I EA K+
Sbjct: 24 DVDVEELEGIGRVTGAKLKERGYYTVRDIAFASVKELAEIIG-NEDRAQQIIEAARKMLG 82
Query: 135 -NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
+SF++A +V E+RK++ +I+TG LD++LGGGIE+ A+TE GEF +GKTQL H L++
Sbjct: 83 LHSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAV 142
Query: 194 TAQLPDETRGYTGGKVIYVDSENTLYP 220
QLP+E RG G K IY+D+ENT P
Sbjct: 143 MVQLPEE-RGGLGAKAIYIDTENTFRP 168
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF +P +P GGNI+AH +T R+ LRK + RIAKI+DSP PE E F IT G+
Sbjct: 275 VFF---GNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 331
Query: 311 AD 312
D
Sbjct: 332 VD 333
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
D+D+ + + KLK G T+K V + +++++I G E + I+ A +
Sbjct: 24 DLDVEELEGVGKVTGAKLKEKGFYTVKDVAFASVKELAEIIGNEERALQIIESARKMLGL 83
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194
+SF++A +V E+RK++ +I+TG LD++LGGGIE+ A+TE GEF +GKTQL H L++
Sbjct: 84 HSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVM 143
Query: 195 AQLPDETRGYTGGKVIYVDSENTLYP 220
QLP+E RG G K IY+D+ENT P
Sbjct: 144 VQLPEE-RGGLGAKAIYIDTENTFRP 168
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF +P +P GGNI+AH +T R+ LRK + RI KI+DSP PE E F IT G+
Sbjct: 275 VFF---GNPLRPAGGNILAHGATYRLWLRKSKENIRIVKIFDSPYHPEGEVSFRITEEGL 331
Query: 311 AD 312
D
Sbjct: 332 ID 333
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
Query: 71 EFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130
E D+D+ + + KLK G T++ V + +++++I G +E + +I EA
Sbjct: 17 EITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-NEERAQQIVEAAR 75
Query: 131 KICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSH 189
K+ +SF++A +V E+RK++ +I+TG LD++LGGGIE+ A+TE GEF +GKTQL H
Sbjct: 76 KMLGLHSFVSALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCH 135
Query: 190 TLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
L++ QLP+E RG G K IY+D+ENT P
Sbjct: 136 QLAVMVQLPEE-RGGLGAKAIYIDTENTFRP 165
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF +P +P GGNI+AH +T R+ LRK + RIAKI+DSP PE E F IT G+
Sbjct: 272 VFF---GNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
Query: 311 AD 312
D
Sbjct: 329 VD 330
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQ 142
+ A +KL+ G T++ + + + ++ ++ G SE KI +A K + +F+ A +
Sbjct: 47 VGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADE 106
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
++KR+ + +I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++ QLP E
Sbjct: 107 YLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 166
Query: 203 GYTGGKVIYVDSENTLYP 220
G G VI++D+ENT P
Sbjct: 167 GLN-GSVIWIDTENTFRP 183
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 218 LYPLLNIIAIASLVTLVGSRLPMSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTRIS 277
L+ L N+ IA VT P +F DP +P+GG+I+AH++T R+
Sbjct: 272 LHRLANLYEIAVFVTNQVQARPDAFF-------------GDPTRPIGGHILAHSATLRVY 318
Query: 278 LRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
LRKG+G R+A++ D+P +PE EA+F IT GI D
Sbjct: 319 LRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 353
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Query: 83 NINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAA 141
+ A +KL+ G T++ + + + ++ ++ G SE KI +A K + +F+ A
Sbjct: 42 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRAD 101
Query: 142 QVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDET 201
+ ++KR + +I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++ QLP E
Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161
Query: 202 RGYTGGKVIYVDSENTLYP 220
G G VI++D+ENT P
Sbjct: 162 GGLN-GSVIWIDTENTFRP 179
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 13/95 (13%)
Query: 218 LYPLLNIIAIASLVTLVGSRLPMSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTRIS 277
L+ L N+ IA VT P +F DP +P+GG+I+AH++T R+
Sbjct: 268 LHRLANLYDIAVFVTNQVQARPDAFF-------------GDPTRPIGGHILAHSATLRVY 314
Query: 278 LRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
LRKG+G RIA++ D+P +PE EA+F+IT GI D
Sbjct: 315 LRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Query: 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
D+D+ + + KLK G T++ V + ++++++ G +E + +I EA K+
Sbjct: 21 DLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEVVG-NEERALQIVEAARKMLG 79
Query: 135 -NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193
+SF++A +V E+RK + +I+TG LD++LGGGIE+ A+TE GEF +GKTQL H L++
Sbjct: 80 LHSFVSALEVYERRKTIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAV 139
Query: 194 TAQLPDETRGYTGGKVIYVDSENTLYP 220
QLP+E RG G K IY+D+ENT P
Sbjct: 140 MVQLPEE-RGGLGAKAIYIDTENTFRP 165
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF +P +P GGNI+AH +T R+ LRK + RIAKI+DSP PE E F IT G+
Sbjct: 272 VFF---GNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
Query: 311 AD 312
D
Sbjct: 329 VD 330
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQVVEKRK 148
+KL+ G TI+ V + + +++ + G +E KI +A K+ + F + +V+E+R+
Sbjct: 26 RKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANIGGFESGDKVLERRR 85
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
V KITTGS +LD++LGGG+E+ AITE FGEF +GKTQ+ H L++ QLP++ G G
Sbjct: 86 SVKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLE-GS 144
Query: 209 VIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITR 246
VI +D+ENT P II +A L G+ + + ++ +
Sbjct: 145 VIIIDTENTFRP-ERIIQMAEAKGLDGNEVLKNIYVAQ 181
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
L DP KPVGG+I+AH +T RI L+KG+ + RIA++ DSP +PE EA+F +T GI DA+
Sbjct: 269 LFGDPTKPVGGHIVAHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAIFRVTERGIEDAE 328
Query: 315 D 315
+
Sbjct: 329 E 329
>sp|O27436|RADA_METTH DNA repair and recombination protein RadA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=radA PE=3 SV=1
Length = 311
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Query: 83 NINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQ 142
N+ +KL+ G + + T +++S E +K+ EA + F TA
Sbjct: 9 NVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKIDFETAFD 68
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
V+E+RK V +ITTGS LD+++GGGIE+ AITE FGEF +GK+QLSH L++T QLP+E R
Sbjct: 69 VMERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEE-R 127
Query: 203 GYTGGKVIYVDSENTLYP 220
G + +++D+ENT P
Sbjct: 128 GGLDAEAVFIDTENTFRP 145
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 259 PKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
P K +GG+++ HA+T RI L+KG RIA++ DSP +PE E +F IT GI D
Sbjct: 258 PTKAIGGHVLGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECVFKITTAGIVD 311
>sp|Q12UG7|RADA_METBU DNA repair and recombination protein RadA OS=Methanococcoides
burtonii (strain DSM 6242) GN=radA PE=3 SV=1
Length = 325
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Query: 70 EEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEAC 129
E +D+D ++ A +KLK G TI+ + + + +++ E+ KI A
Sbjct: 3 EVLLEDLD-----HVGPATAQKLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAA 57
Query: 130 MKICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLS 188
+ D F T V+E+RK V K++TG TE D+++GGGIE+ +ITE +GEF +GKTQ++
Sbjct: 58 RQSADIGGFETGDLVLERRKLVGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIA 117
Query: 189 HTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
H L++ QLP E +G GG VI +D+ENT P
Sbjct: 118 HQLAVNVQLPPE-QGGLGGSVIMIDTENTFRP 148
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 252 FFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311
FF DP KP+GG+I+ H +T R+ +RK +GE RI K+ DSP++P+ EA+ ++T GI
Sbjct: 267 FF---GDPTKPIGGHILGHTATFRLYIRKSKGEKRIVKLVDSPNLPDGEALISVTTDGIG 323
Query: 312 DA 313
DA
Sbjct: 324 DA 325
>sp|Q8PZN5|RADA_METMA DNA repair and recombination protein RadA OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=radA PE=3 SV=2
Length = 325
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQ 142
+ A +KLK G TI+ V + + +++ E+ KI A + D F T
Sbjct: 12 VGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDL 71
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
V+E+RK V K+TTG TE D+++GGGIE+ AITE +GEF +GKTQ++H L++ Q+ D
Sbjct: 72 VLERRKLVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQM-DREH 130
Query: 203 GYTGGKVIYVDSENTLYP 220
G GG VI +D+ENT P
Sbjct: 131 GGLGGSVIIIDTENTFRP 148
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 252 FFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311
FF DP +P+GG+I+ H +T R+ LRK +GE RI ++ DSP +PE EA+ A+T G+
Sbjct: 267 FF---GDPTRPIGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 323
Query: 312 D 312
D
Sbjct: 324 D 324
>sp|Q6L126|RADA_PICTO DNA repair and recombination protein RadA OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=radA PE=3 SV=1
Length = 323
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 61 VEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEA 120
+E+ D+E E +D+ + A +KL+ G I + + + + +++I G +E
Sbjct: 1 MEKNDKEKRELTIEDLP-----GVGDATAEKLRESGYDDIMTIAVASPKDLAEISGIAEG 55
Query: 121 KVDKIKEACMKICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGE 179
KI A K D +F T +++ KRK++ K+TTGS+ LD +LGGG+E+ +ITE FGE
Sbjct: 56 AAIKIINAARKYADVGNFETGEEILNKRKEIKKLTTGSSNLDNLLGGGLETQSITEFFGE 115
Query: 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
F +GKTQ+ H L++ A +P E G+ V+ +D+ENT P
Sbjct: 116 FGSGKTQIMHQLAVNATMPVEKNGFD-SDVLIIDTENTFRP 155
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF DP P+GGNI+ H +T RI LRK + RIA++ DSP +PE E + IT GI
Sbjct: 262 VFF---GDPMNPIGGNIVGHTATFRIYLRKAKAGKRIARLIDSPYLPEGETVITITESGI 318
Query: 311 ADAK 314
D +
Sbjct: 319 TDGE 322
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL+ G + + T +++S E K+ EA K F TA +V+E+R+
Sbjct: 16 QKLRDAGFADMMRLATATPKELSVKVEIGEGVAAKVIEAARKAEKIDFETAFEVMERRED 75
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKV 209
V +ITTGS LD+++GGGIE+ +ITE +GEF +GK+Q+SH LS+T QLP E G G+V
Sbjct: 76 VGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLD-GEV 134
Query: 210 IYVDSENTLYP 220
+++D+ENT P
Sbjct: 135 VFIDTENTFRP 145
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 216 NTLYPLLNIIAIASLVTLVGSRLPMSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTR 275
+TL + N +A L+T P SF T P K VGG+++ HAST R
Sbjct: 228 HTLQTIANTYNVAVLITNQVQSKPDSFFGT-------------PTKAVGGHVLGHASTYR 274
Query: 276 ISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
I L+KG RIA++ DSP +PE E++F +T G+ D
Sbjct: 275 ILLKKGLSGKRIARLVDSPHLPEGESVFKVTTEGLVD 311
>sp|Q46A31|RADA_METBF DNA repair and recombination protein RadA OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=radA PE=3 SV=1
Length = 325
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQ 142
+ A +KLK G TI+ V + + +++ E+ KI A + D F T
Sbjct: 12 VGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDI 71
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
V+E+RK V K+TTG E D+++GGGIE+ AITE +GEF +GKTQL+H ++ Q+ D
Sbjct: 72 VLERRKMVGKLTTGCMEFDEMMGGGIETQAITELYGEFGSGKTQLAHQFAVNVQM-DREH 130
Query: 203 GYTGGKVIYVDSENTLYP 220
G G VI +D+ENT P
Sbjct: 131 GGLNGSVIIIDTENTFRP 148
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 252 FFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311
FF DP +PVGG+++ H +T R+ LRK +G+ RI ++ DSP++PE EA+ A+T G+
Sbjct: 267 FF---GDPTRPVGGHVVGHTATFRLYLRKSKGDKRIIRLVDSPNLPEGEAVIAVTTAGLT 323
Query: 312 D 312
D
Sbjct: 324 D 324
>sp|Q4JAT5|RADA_SULAC DNA repair and recombination protein RadA OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=radA PE=3 SV=1
Length = 321
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 89 IKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRK 148
+ KL G +++ V + T + +S G + +I + + D F TA +V ++R
Sbjct: 22 LNKLVEAGYSSLEAVAVATPQDLSVAAGIPQTTAQRIIKEAREALDIRFKTALEVKKERM 81
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
KITTGS LD +LGGGIE+ +TE FGEF +GKTQL H +SI+ QLP E +G GK
Sbjct: 82 NTKKITTGSQALDGLLGGGIETRTMTEFFGEFGSGKTQLCHQISISVQLPQE-KGGLNGK 140
Query: 209 VIYVDSENTL 218
+Y+D+E T
Sbjct: 141 AVYIDTEGTF 150
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DP VGG+ + H R+ L+K RG RIA+I D+P +PE E +FAIT G+ DA++
Sbjct: 263 GDPTTAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGVRDAEE 321
>sp|A2SR54|RADA_METLZ DNA repair and recombination protein RadA OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=radA
PE=3 SV=1
Length = 329
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD- 134
+DI + + A +L+ G T++ + T +++ E+ KI +A ++ D
Sbjct: 4 LDIEEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAAREMADI 63
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194
F T ++ +R+ V K+ T E+D++ GGG+E+ AITE +GEF +GK+Q++H L++
Sbjct: 64 GGFKTGTDILARRQDVLKLKTLVPEIDELFGGGLETQAITELYGEFGSGKSQIAHQLAVN 123
Query: 195 AQLPDETRGYTGGKVIYVDSENTLYP 220
QLP E G GG +Y+D+ENT P
Sbjct: 124 CQLPQELGGL-GGSCLYIDTENTFRP 148
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
L DP KP+GGNI+ H +T R+ LRK + RIA++ DSP++PE EA F + GI
Sbjct: 271 LFGDPTKPIGGNIVGHTATYRVYLRKSKAGKRIARLVDSPNLPEGEATFMVETAGI 326
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL G T++ + T +++SQ G KI +A + + F TA + +
Sbjct: 23 QKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNIDFKTAYDLKIESMN 82
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKV 209
+ KITTGS LD++LGGGIE+ ITE FGEF +GKTQ+ H LS+ QLP E +G GK
Sbjct: 83 IKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLP-EDKGGLEGKA 141
Query: 210 IYVDSENTL 218
+YVD+E T
Sbjct: 142 VYVDTEGTF 150
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VF+ DP + VGG+++ HA R+ L+K RG RIA++ D+P +PE E +FAIT GI
Sbjct: 259 VFY---GDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPHLPEGETVFAITEWGI 315
Query: 311 AD 312
D
Sbjct: 316 RD 317
>sp|Q9HJ68|RADA_THEAC DNA repair and recombination protein RadA OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=radA PE=3 SV=1
Length = 323
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 87 ADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQVVE 145
A +KL+ G I + + + + +S + G E KI A K D +F T +++E
Sbjct: 23 ATAEKLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKIIAAARKFADIGNFETGEEILE 82
Query: 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT 205
+RK + K+TTGS LD +LGGG+E+ AITE FGEF +GKTQ+ H L++ LP E G+
Sbjct: 83 RRKSIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFD 142
Query: 206 GGKVIYVDSENTLYP 220
V+ +D+ENT P
Sbjct: 143 -SDVMMIDTENTFRP 156
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF DP P+GGNI+ H +T RI LRK +G RIA++ DSP +PE E + I+ G+
Sbjct: 263 VFF---GDPMAPIGGNIVGHTATFRIYLRKSKGGKRIARLIDSPYLPEGETVIQISEEGV 319
Query: 311 ADA 313
+D
Sbjct: 320 SDG 322
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 89 IKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRK 148
+ KL G +++ V + + + +S G +I + + D F TA +V ++R
Sbjct: 25 LNKLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRIIKEAREALDIRFKTALEVKKERI 84
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
KITTGS LD +LGGGIE+ +TE FGEF +GKTQL H LS+ QLP E +G GGK
Sbjct: 85 NTKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLE-KGGLGGK 143
Query: 209 VIYVDSENTL 218
+Y+D+E T
Sbjct: 144 AVYIDTEGTF 153
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 257 ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DP VGG+ + H R+ L+K RG RIA+I D+P +PE E +FAIT G+ DA++
Sbjct: 266 GDPTVAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGVRDAEE 324
>sp|A5UMW0|RADA_METS3 DNA repair and recombination protein RadA OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3
SV=1
Length = 311
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL+ G + + T +++S E +K+ EA K F TA V+E+R+
Sbjct: 16 EKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARKSEKIDFETAYDVLERRRD 75
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKV 209
V I+ GS + ++GGGIE+ +ITE FGEF +GK+Q+SH L++T QLP E +G G+
Sbjct: 76 VGHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQLPPE-KGGLDGEC 134
Query: 210 IYVDSENTLYP 220
+++D+ENT P
Sbjct: 135 VFIDTENTFRP 145
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 259 PKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
P K +GG+++ HAST RI L+KG RIA++ DSP +PE E +F I GI D
Sbjct: 258 PTKAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIKTEGIVD 311
>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1
Length = 324
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 87 ADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEK 146
A + KL G T++ + + + + +S G +I + D F TA ++ ++
Sbjct: 23 AVLNKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIKEARDALDIRFKTALEIEQE 82
Query: 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTG 206
R V KITTGS LD +LGGGIE+ +TE FGEF +GKTQ+ H +S+ QLP E RG
Sbjct: 83 RASVKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPE-RGGLS 141
Query: 207 GKVIYVDSENTL 218
GK +Y+D+E T
Sbjct: 142 GKALYIDTEGTF 153
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 192 SITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITREDLIV 251
SIT+ E G V L+ L+ + I L +V +++ + R D+
Sbjct: 211 SITSHFRAEYSGRENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQV-----MARPDM-- 263
Query: 252 FFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311
F+ DP VGG+ + H R+ ++K RG RIA++ D+P +PE E +F+ITN GI
Sbjct: 264 FY---GDPTVAVGGHTLYHVPGIRVQIKKSRGNRRIARMVDAPHLPEGEVVFSITNTGIR 320
Query: 312 DAKD 315
DA++
Sbjct: 321 DAEE 324
>sp|Q8TK71|RADA_METAC DNA repair and recombination protein RadA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=radA PE=3 SV=1
Length = 325
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD-NSFLTAAQ 142
+ A +KLK G T++ V + + +++ E+ KI + + D F T
Sbjct: 12 VGPATAEKLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIINSARQAADIGGFETGDL 71
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETR 202
V+E+RK V K+TTG E D+++GGGIE+ +ITE +GEF +GKTQ++H L++ Q+ D+
Sbjct: 72 VLERRKLVGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLAVNVQM-DKEH 130
Query: 203 GYTGGKVIYVDSENTLYP 220
G G VI +D+ENT P
Sbjct: 131 GGLDGSVIIIDTENTFRP 148
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 252 FFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311
FF DP +PVGG+I+ H +T R+ LRK +GE RI ++ DSP +PE EA+ A+T G+
Sbjct: 267 FF---GDPTRPVGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 323
Query: 312 D 312
D
Sbjct: 324 D 324
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 90 KKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149
+KL G T++ + T +++SQ G KI +A + + F TA + +
Sbjct: 23 QKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNIDFKTAYDLKIESMN 82
Query: 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKV 209
+ KITTGS LD++LGGGIE+ ITE FGEF +GKTQ+ H LS+ QLP E +G GK
Sbjct: 83 IKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLP-EDKGGLEGKA 141
Query: 210 IYVDSENTL 218
+Y+D+E T
Sbjct: 142 VYIDTEGTF 150
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VF+ DP + VGG+++ HA R+ L+K RG RIA++ D+P +PE E +FAIT GI
Sbjct: 259 VFY---GDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPHLPEGETVFAITEWGI 315
Query: 311 AD 312
D
Sbjct: 316 RD 317
>sp|Q97BJ9|RADA_THEVO DNA repair and recombination protein RadA OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=radA PE=3 SV=1
Length = 323
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 67 EDGEEFFQDVDILQNY-NINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKI 125
ED EE + L++ + A +KL+ G I + + + + +S + G E KI
Sbjct: 2 EDNEENKEKKTTLEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKI 61
Query: 126 KEACMKICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGK 184
A K D +F T +++E+RK + K+TTGS LD +LGGG+E+ AITE FGEF +GK
Sbjct: 62 IAAARKFADIGNFETGEEILERRKTIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGK 121
Query: 185 TQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
TQ+ H L++ +P E G+ V+ +D+ENT P
Sbjct: 122 TQIMHQLAVNCTMPKEKGGFD-SDVMMIDTENTFRP 156
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VFF DP P+GGNI+ H +T R+ LRK +G RIA++ DSP +PE E + I+ G+
Sbjct: 263 VFF---GDPMAPIGGNIVGHTATFRVYLRKSKGGKRIARLIDSPYLPEGETVIQISEEGV 319
Query: 311 ADA 313
D
Sbjct: 320 NDG 322
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 85 NVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVV 144
++AD KL++ G + + + ++++ G V KI E K+ +F TA +V
Sbjct: 27 SIAD--KLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIENARKMLGITFKTAREVK 84
Query: 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY 204
++R + KITTGS LD++LGGG+E+ ITE FGE+ +GKTQ+ H LS+ QL E +G
Sbjct: 85 QERSNIGKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPE-KGG 143
Query: 205 TGGKVIYVDSENTL 218
G+ +Y+D+E T
Sbjct: 144 LNGRAVYIDTEGTF 157
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310
VF+ DP VGG+++AH RI LRK +G RIA++ D+P +PE E +F IT GI
Sbjct: 266 VFY---GDPTTAVGGHVLAHTPGVRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
Query: 311 ADAKD 315
D+++
Sbjct: 323 RDSEE 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,124,375
Number of Sequences: 539616
Number of extensions: 4067071
Number of successful extensions: 16313
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 401
Number of HSP's that attempted gapping in prelim test: 15777
Number of HSP's gapped (non-prelim): 740
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)