Query psy13674
Match_columns 315
No_of_seqs 211 out of 2164
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:30:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03187 meiotic recombination 100.0 1.1E-59 2.4E-64 455.5 26.9 254 60-315 15-344 (344)
2 KOG1434|consensus 100.0 4.1E-59 8.8E-64 430.5 12.7 251 62-314 6-334 (335)
3 TIGR02238 recomb_DMC1 meiotic 100.0 3E-56 6.5E-61 426.9 25.9 236 76-313 1-313 (313)
4 PTZ00035 Rad51 protein; Provis 100.0 1.1E-55 2.4E-60 426.7 27.4 252 62-315 9-337 (337)
5 PLN03186 DNA repair protein RA 100.0 8.1E-55 1.7E-59 421.4 26.4 254 60-315 12-342 (342)
6 TIGR02239 recomb_RAD51 DNA rep 100.0 2.6E-50 5.6E-55 386.3 25.8 238 76-315 1-316 (316)
7 PF08423 Rad51: Rad51; InterP 100.0 5.5E-47 1.2E-51 353.4 17.4 178 135-314 2-256 (256)
8 TIGR02236 recomb_radA DNA repa 100.0 8.8E-45 1.9E-49 344.7 26.3 229 82-312 5-310 (310)
9 PRK04301 radA DNA repair and r 100.0 1.5E-44 3.2E-49 345.1 25.9 236 74-313 6-317 (317)
10 KOG1564|consensus 100.0 1E-34 2.2E-39 271.6 17.2 210 100-313 32-351 (351)
11 KOG1433|consensus 100.0 1.6E-36 3.4E-41 291.2 4.5 232 67-314 15-323 (326)
12 COG0468 RecA RecA/RadA recombi 100.0 3E-33 6.6E-38 264.1 19.8 192 115-314 3-268 (279)
13 cd01123 Rad51_DMC1_radA Rad51_ 100.0 4.2E-32 9.2E-37 245.9 18.2 157 153-311 1-235 (235)
14 cd01393 recA_like RecA is a b 100.0 1.3E-28 2.8E-33 221.8 16.3 149 153-303 1-226 (226)
15 PRK09361 radB DNA repair and r 100.0 2.4E-27 5.1E-32 214.6 18.3 154 151-313 3-224 (225)
16 cd01394 radB RadB. The archaea 99.9 1.7E-26 3.7E-31 207.9 17.5 150 153-311 1-218 (218)
17 TIGR02237 recomb_radB DNA repa 99.9 6.4E-25 1.4E-29 196.1 16.8 142 160-311 1-209 (209)
18 PRK09519 recA DNA recombinatio 99.9 8.9E-25 1.9E-29 229.6 15.8 154 147-308 35-265 (790)
19 cd00983 recA RecA is a bacter 99.9 2.4E-24 5.3E-29 207.5 14.4 159 147-313 30-267 (325)
20 PRK09354 recA recombinase A; P 99.9 4.1E-24 8.9E-29 207.6 14.4 157 149-313 37-272 (349)
21 TIGR02012 tigrfam_recA protein 99.9 1.9E-23 4.1E-28 201.1 11.7 158 148-313 31-267 (321)
22 PRK11823 DNA repair protein Ra 99.8 2.4E-20 5.2E-25 186.8 16.5 156 149-314 58-267 (446)
23 cd01121 Sms Sms (bacterial rad 99.8 4E-20 8.6E-25 181.4 16.9 156 149-314 60-269 (372)
24 TIGR03878 thermo_KaiC_2 KaiC d 99.8 3.9E-20 8.5E-25 172.7 14.6 155 151-313 2-254 (259)
25 TIGR00416 sms DNA repair prote 99.8 2.3E-19 5E-24 180.1 16.8 155 149-313 72-280 (454)
26 PF00154 RecA: recA bacterial 99.8 2.7E-19 5.8E-24 172.4 12.6 156 148-311 29-263 (322)
27 PRK04328 hypothetical protein; 99.8 1.2E-18 2.5E-23 161.8 16.2 151 151-311 3-232 (249)
28 PF06745 KaiC: KaiC; InterPro 99.8 9.1E-19 2E-23 158.7 12.8 149 153-311 1-221 (226)
29 TIGR03877 thermo_KaiC_1 KaiC d 99.8 2.9E-18 6.2E-23 157.6 16.3 150 152-311 2-230 (237)
30 COG1066 Sms Predicted ATP-depe 99.8 6.8E-18 1.5E-22 165.7 14.9 155 148-314 70-279 (456)
31 TIGR03881 KaiC_arch_4 KaiC dom 99.7 1.6E-16 3.5E-21 144.0 16.1 153 152-311 1-226 (229)
32 PRK06067 flagellar accessory p 99.7 1.2E-16 2.6E-21 145.9 15.1 62 150-218 4-65 (234)
33 TIGR02655 circ_KaiC circadian 99.7 1.1E-16 2.4E-21 161.7 15.8 153 149-311 241-460 (484)
34 PRK09302 circadian clock prote 99.7 1.6E-16 3.5E-21 160.9 16.3 154 148-311 250-470 (509)
35 TIGR03880 KaiC_arch_3 KaiC dom 99.7 1.4E-15 3.1E-20 137.8 16.2 146 156-311 1-216 (224)
36 TIGR02655 circ_KaiC circadian 99.7 1.5E-15 3.2E-20 153.5 15.5 151 152-311 2-227 (484)
37 PRK09302 circadian clock prote 99.6 5.2E-15 1.1E-19 150.0 16.0 154 149-311 9-237 (509)
38 PRK08533 flagellar accessory p 99.5 1.7E-13 3.7E-18 126.1 15.2 152 150-311 3-223 (230)
39 COG0467 RAD55 RecA-superfamily 99.5 1.9E-13 4.1E-18 127.0 15.4 153 150-312 2-232 (260)
40 cd01122 GP4d_helicase GP4d_hel 99.4 5.6E-12 1.2E-16 116.9 13.7 143 151-300 11-255 (271)
41 PF03796 DnaB_C: DnaB-like hel 99.4 1.9E-11 4.1E-16 113.3 16.2 147 152-307 1-249 (259)
42 TIGR03600 phage_DnaB phage rep 99.4 4.7E-11 1E-15 118.4 19.6 146 150-303 174-419 (421)
43 cd00984 DnaB_C DnaB helicase C 99.3 2E-11 4.3E-16 111.1 13.3 139 159-304 2-239 (242)
44 TIGR00665 DnaB replicative DNA 99.3 2E-10 4.2E-15 114.3 21.3 149 150-306 175-423 (434)
45 PRK08760 replicative DNA helic 99.3 1.3E-10 2.7E-15 117.9 19.2 155 149-305 208-457 (476)
46 PRK07004 replicative DNA helic 99.3 2.7E-10 5.8E-15 115.0 18.4 154 150-305 193-441 (460)
47 PHA02542 41 41 helicase; Provi 99.3 2.2E-10 4.8E-15 116.0 17.7 143 149-299 168-409 (473)
48 PRK05748 replicative DNA helic 99.2 2.2E-10 4.7E-15 114.8 17.0 149 150-306 183-433 (448)
49 PRK06321 replicative DNA helic 99.2 3.1E-10 6.8E-15 114.9 17.6 155 150-306 206-456 (472)
50 PRK05595 replicative DNA helic 99.2 1.5E-10 3.2E-15 116.0 14.9 149 150-306 181-429 (444)
51 PRK08506 replicative DNA helic 99.2 4.2E-10 9.1E-15 113.9 17.6 147 150-305 172-441 (472)
52 PRK09165 replicative DNA helic 99.2 2.8E-10 6.2E-15 115.8 15.0 154 150-305 197-477 (497)
53 PRK05636 replicative DNA helic 99.2 3.2E-10 6.9E-15 115.7 15.0 155 150-306 245-493 (505)
54 PRK08006 replicative DNA helic 99.2 3.7E-10 8E-15 114.4 14.6 154 150-305 204-453 (471)
55 PRK08840 replicative DNA helic 99.2 1.5E-09 3.3E-14 109.7 18.2 155 150-306 197-447 (464)
56 PRK06904 replicative DNA helic 99.2 2.6E-09 5.7E-14 108.2 19.9 155 150-306 201-453 (472)
57 COG2874 FlaH Predicted ATPases 99.1 6.3E-10 1.4E-14 102.0 11.2 60 152-218 9-68 (235)
58 PRK06749 replicative DNA helic 99.1 2.3E-09 5E-14 107.4 15.9 148 150-306 166-418 (428)
59 PRK05973 replicative DNA helic 99.1 2.5E-09 5.5E-14 99.5 13.1 90 108-217 14-103 (237)
60 COG0305 DnaB Replicative DNA h 99.0 4E-09 8.8E-14 105.6 14.1 158 150-309 176-427 (435)
61 PF13481 AAA_25: AAA domain; P 99.0 3.7E-10 8E-15 99.1 5.5 80 150-229 11-94 (193)
62 PRK07773 replicative DNA helic 98.9 1.2E-08 2.5E-13 110.5 12.9 47 150-197 197-243 (886)
63 cd01124 KaiC KaiC is a circadi 98.8 5.9E-08 1.3E-12 84.4 12.8 38 173-217 1-38 (187)
64 KOG2859|consensus 98.8 4.5E-08 9.7E-13 90.3 10.0 59 169-229 36-94 (293)
65 cd01125 repA Hexameric Replica 98.7 1.6E-07 3.4E-12 86.3 12.4 140 171-310 1-236 (239)
66 cd01120 RecA-like_NTPases RecA 98.4 4.7E-06 1E-10 69.4 11.4 40 173-219 1-40 (165)
67 PF14520 HHH_5: Helix-hairpin- 98.1 9.3E-06 2E-10 59.7 5.6 54 77-130 5-59 (60)
68 COG3598 RepA RecA-family ATPas 98.0 3.6E-06 7.9E-11 81.7 4.2 123 168-291 86-282 (402)
69 TIGR01954 nusA_Cterm_rpt trans 97.8 5.7E-05 1.2E-09 53.0 6.1 49 84-132 1-49 (50)
70 PF03118 RNA_pol_A_CTD: Bacter 97.7 6E-05 1.3E-09 57.0 4.2 60 68-130 6-65 (66)
71 PRK10867 signal recognition pa 97.4 0.0041 8.9E-08 62.9 14.8 130 87-232 11-156 (433)
72 smart00382 AAA ATPases associa 97.4 0.00026 5.7E-09 56.0 4.7 44 171-221 2-45 (148)
73 PRK00771 signal recognition pa 97.3 0.0041 8.9E-08 63.0 13.2 127 89-231 9-149 (437)
74 cd00544 CobU Adenosylcobinamid 97.2 0.00066 1.4E-08 60.0 5.4 39 173-221 1-39 (169)
75 PRK10416 signal recognition pa 97.1 0.011 2.3E-07 57.5 14.0 96 112-220 56-155 (318)
76 TIGR03499 FlhF flagellar biosy 97.0 0.017 3.7E-07 54.9 14.0 95 112-220 143-237 (282)
77 PRK12724 flagellar biosynthesi 96.9 0.013 2.7E-07 59.4 12.3 100 111-221 163-266 (432)
78 PRK05703 flhF flagellar biosyn 96.9 0.025 5.4E-07 57.1 14.4 92 110-215 168-260 (424)
79 COG1126 GlnQ ABC-type polar am 96.9 0.0042 9.1E-08 57.7 8.1 41 167-215 24-64 (240)
80 PRK12726 flagellar biosynthesi 96.8 0.0093 2E-07 59.7 10.5 133 109-254 148-293 (407)
81 COG1120 FepC ABC-type cobalami 96.7 0.0036 7.8E-08 59.3 6.5 28 167-194 24-51 (258)
82 PF00931 NB-ARC: NB-ARC domain 96.7 0.0063 1.4E-07 56.3 7.9 82 169-255 17-110 (287)
83 COG4604 CeuD ABC-type enteroch 96.7 0.01 2.2E-07 54.8 8.9 41 167-215 23-63 (252)
84 PRK05439 pantothenate kinase; 96.7 0.032 6.9E-07 54.2 12.7 98 106-221 29-131 (311)
85 PF13401 AAA_22: AAA domain; P 96.6 0.0046 1E-07 50.3 5.8 77 170-248 3-86 (131)
86 PRK07758 hypothetical protein; 96.6 0.006 1.3E-07 49.4 6.2 49 83-131 41-89 (95)
87 PRK05800 cobU adenosylcobinami 96.6 0.0038 8.3E-08 55.2 5.5 41 171-221 1-41 (170)
88 PRK14974 cell division protein 96.6 0.043 9.4E-07 53.8 13.0 109 112-232 74-195 (336)
89 TIGR00064 ftsY signal recognit 96.5 0.018 4E-07 54.6 10.0 44 170-221 71-114 (272)
90 PRK14722 flhF flagellar biosyn 96.5 0.018 4E-07 57.2 10.1 96 112-219 83-179 (374)
91 TIGR00959 ffh signal recogniti 96.5 0.052 1.1E-06 54.9 13.4 119 88-221 11-142 (428)
92 cd01133 F1-ATPase_beta F1 ATP 96.5 0.015 3.2E-07 55.6 8.9 49 146-196 46-94 (274)
93 KOG0733|consensus 96.4 0.009 1.9E-07 62.7 7.8 95 167-264 219-346 (802)
94 TIGR01425 SRP54_euk signal rec 96.4 0.019 4.1E-07 58.1 10.0 123 87-226 11-146 (429)
95 cd00009 AAA The AAA+ (ATPases 96.4 0.0068 1.5E-07 48.5 5.5 43 170-219 18-60 (151)
96 PRK04296 thymidine kinase; Pro 96.4 0.0033 7.1E-08 56.2 3.9 38 170-214 1-38 (190)
97 PRK12766 50S ribosomal protein 96.4 0.0069 1.5E-07 56.4 5.9 49 82-130 9-57 (232)
98 TIGR00554 panK_bact pantothena 96.4 0.034 7.4E-07 53.5 10.9 96 106-220 5-106 (290)
99 PRK11889 flhF flagellar biosyn 96.3 0.11 2.5E-06 52.4 14.7 75 171-254 241-328 (436)
100 PF13207 AAA_17: AAA domain; P 96.3 0.003 6.6E-08 51.0 2.9 23 173-195 1-23 (121)
101 cd03115 SRP The signal recogni 96.3 0.0055 1.2E-07 53.1 4.3 40 173-220 2-41 (173)
102 PRK00889 adenylylsulfate kinas 96.2 0.0058 1.3E-07 53.1 4.4 40 169-215 2-41 (175)
103 COG1124 DppF ABC-type dipeptid 96.2 0.018 3.9E-07 54.2 7.8 27 167-193 29-55 (252)
104 PF00004 AAA: ATPase family as 96.2 0.0085 1.9E-07 48.4 5.0 31 175-215 2-32 (132)
105 KOG0744|consensus 96.2 0.013 2.7E-07 57.7 6.7 78 169-252 175-253 (423)
106 COG4107 PhnK ABC-type phosphon 96.2 0.032 6.9E-07 50.9 8.8 44 167-217 28-71 (258)
107 COG4608 AppF ABC-type oligopep 96.1 0.014 3.1E-07 55.5 6.6 41 167-215 35-75 (268)
108 PF13173 AAA_14: AAA domain 96.1 0.0078 1.7E-07 49.9 4.3 38 171-216 2-39 (128)
109 PRK09099 type III secretion sy 96.1 0.021 4.5E-07 58.0 8.0 50 145-196 139-188 (441)
110 PF13671 AAA_33: AAA domain; P 96.1 0.0047 1E-07 51.1 2.9 22 173-194 1-22 (143)
111 PRK12723 flagellar biosynthesi 96.1 0.02 4.3E-07 57.2 7.8 132 110-254 116-262 (388)
112 KOG0734|consensus 96.1 0.0071 1.5E-07 62.6 4.6 34 163-198 331-364 (752)
113 PF13479 AAA_24: AAA domain 96.1 0.0052 1.1E-07 55.8 3.4 31 172-217 4-34 (213)
114 cd01132 F1_ATPase_alpha F1 ATP 96.1 0.033 7.2E-07 53.2 8.9 48 145-194 45-92 (274)
115 PRK09280 F0F1 ATP synthase sub 96.0 0.03 6.6E-07 57.1 8.8 50 145-196 120-169 (463)
116 PF07088 GvpD: GvpD gas vesicl 96.0 0.076 1.6E-06 53.5 11.2 47 169-226 8-54 (484)
117 TIGR03305 alt_F1F0_F1_bet alte 96.0 0.034 7.3E-07 56.6 9.0 50 145-196 114-163 (449)
118 PRK08903 DnaA regulatory inact 96.0 0.0094 2E-07 54.0 4.5 41 168-215 39-79 (227)
119 PF00448 SRP54: SRP54-type pro 95.9 0.031 6.8E-07 50.5 7.9 74 172-254 2-91 (196)
120 PRK08927 fliI flagellum-specif 95.9 0.019 4E-07 58.4 7.0 49 145-195 134-182 (442)
121 PRK05688 fliI flagellum-specif 95.9 0.024 5.3E-07 57.7 7.8 44 148-193 147-190 (451)
122 PRK06936 type III secretion sy 95.9 0.024 5.2E-07 57.5 7.7 49 145-195 138-186 (439)
123 PRK05541 adenylylsulfate kinas 95.9 0.011 2.3E-07 51.5 4.3 40 169-215 5-44 (176)
124 PRK09183 transposase/IS protei 95.8 0.0087 1.9E-07 56.2 3.9 41 168-215 99-139 (259)
125 PRK12727 flagellar biosynthesi 95.8 0.11 2.3E-06 54.3 12.0 43 168-215 347-389 (559)
126 PF05496 RuvB_N: Holliday junc 95.8 0.012 2.6E-07 54.9 4.7 24 174-197 53-76 (233)
127 PRK08972 fliI flagellum-specif 95.8 0.024 5.1E-07 57.6 7.2 48 145-194 138-185 (444)
128 TIGR01039 atpD ATP synthase, F 95.8 0.041 8.8E-07 56.2 8.8 50 145-196 119-168 (461)
129 PRK07960 fliI flagellum-specif 95.8 0.034 7.4E-07 56.7 8.2 47 146-194 152-198 (455)
130 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.01 2.2E-07 53.1 4.1 40 170-216 37-76 (226)
131 PRK08233 hypothetical protein; 95.8 0.013 2.8E-07 50.5 4.5 95 171-279 3-105 (182)
132 COG1127 Ttg2A ABC-type transpo 95.8 0.033 7.3E-07 52.6 7.4 57 167-232 30-88 (263)
133 PRK06893 DNA replication initi 95.8 0.0064 1.4E-07 55.8 2.6 37 172-215 40-76 (229)
134 PF13245 AAA_19: Part of AAA d 95.7 0.017 3.8E-07 44.5 4.4 42 171-215 10-51 (76)
135 PHA00729 NTP-binding motif con 95.6 0.023 5E-07 52.9 5.9 53 160-215 9-67 (226)
136 COG1484 DnaC DNA replication p 95.6 0.011 2.3E-07 55.6 3.4 73 170-256 104-177 (254)
137 PTZ00202 tuzin; Provisional 95.5 0.072 1.6E-06 54.6 9.3 77 158-247 272-358 (550)
138 PF01583 APS_kinase: Adenylyls 95.5 0.039 8.4E-07 48.6 6.6 38 171-215 2-39 (156)
139 PF13086 AAA_11: AAA domain; P 95.5 0.016 3.6E-07 50.9 4.2 23 173-195 19-41 (236)
140 PRK05642 DNA replication initi 95.5 0.0094 2E-07 55.0 2.7 38 172-216 46-83 (234)
141 COG1117 PstB ABC-type phosphat 95.5 0.056 1.2E-06 50.5 7.7 28 166-193 28-55 (253)
142 TIGR01041 ATP_syn_B_arch ATP s 95.5 0.058 1.2E-06 55.1 8.4 51 145-197 117-167 (458)
143 TIGR03015 pepcterm_ATPase puta 95.4 0.07 1.5E-06 49.0 8.3 25 171-195 43-67 (269)
144 PRK12597 F0F1 ATP synthase sub 95.4 0.059 1.3E-06 55.0 8.4 51 144-196 118-168 (461)
145 COG3638 ABC-type phosphate/pho 95.4 0.059 1.3E-06 50.8 7.6 38 155-193 15-52 (258)
146 PRK05182 DNA-directed RNA poly 95.4 0.032 6.9E-07 54.2 6.0 57 72-131 247-303 (310)
147 PRK08472 fliI flagellum-specif 95.3 0.091 2E-06 53.3 9.4 49 145-195 133-181 (434)
148 COG3842 PotA ABC-type spermidi 95.3 0.019 4.1E-07 56.7 4.3 42 166-215 26-67 (352)
149 PF07728 AAA_5: AAA domain (dy 95.3 0.032 7E-07 46.3 5.1 38 174-221 2-39 (139)
150 PRK08084 DNA replication initi 95.3 0.022 4.8E-07 52.5 4.5 38 172-216 46-83 (235)
151 PF00308 Bac_DnaA: Bacterial d 95.3 0.0096 2.1E-07 54.5 2.0 38 173-215 36-73 (219)
152 PRK05480 uridine/cytidine kina 95.3 0.033 7.2E-07 49.8 5.5 40 170-218 5-44 (209)
153 COG3839 MalK ABC-type sugar tr 95.3 0.023 5E-07 55.8 4.6 46 168-221 26-73 (338)
154 PF00005 ABC_tran: ABC transpo 95.2 0.012 2.6E-07 48.5 2.2 27 168-194 8-34 (137)
155 PRK05922 type III secretion sy 95.2 0.073 1.6E-06 54.0 8.1 45 148-194 136-180 (434)
156 TIGR03496 FliI_clade1 flagella 95.1 0.067 1.5E-06 53.9 7.7 48 145-194 113-160 (411)
157 PRK06762 hypothetical protein; 95.1 0.027 5.9E-07 48.3 4.3 23 172-194 3-25 (166)
158 PF14229 DUF4332: Domain of un 95.1 0.062 1.3E-06 45.2 6.3 50 82-131 1-55 (122)
159 TIGR00962 atpA proton transloc 95.1 0.076 1.7E-06 54.8 8.1 49 144-194 136-184 (501)
160 cd01134 V_A-ATPase_A V/A-type 95.1 0.042 9.1E-07 54.5 5.9 57 148-215 136-192 (369)
161 TIGR02027 rpoA DNA-directed RN 95.1 0.045 9.7E-07 52.8 5.9 55 74-131 235-289 (297)
162 PF12846 AAA_10: AAA-like doma 95.1 0.02 4.4E-07 52.5 3.5 23 174-196 4-26 (304)
163 TIGR00455 apsK adenylylsulfate 95.0 0.14 2.9E-06 44.9 8.5 40 169-215 16-55 (184)
164 PF01695 IstB_IS21: IstB-like 95.0 0.023 4.9E-07 50.5 3.6 38 171-215 47-84 (178)
165 PRK08118 topology modulation p 95.0 0.021 4.6E-07 50.0 3.3 25 174-198 4-28 (167)
166 TIGR00235 udk uridine kinase. 95.0 0.019 4.2E-07 51.5 3.1 26 169-194 4-29 (207)
167 PRK06820 type III secretion sy 95.0 0.076 1.6E-06 54.0 7.5 46 147-194 141-186 (440)
168 cd03292 ABC_FtsE_transporter F 95.0 0.029 6.3E-07 50.0 4.1 28 167-194 23-50 (214)
169 PF00006 ATP-synt_ab: ATP synt 95.0 0.04 8.7E-07 50.7 5.1 40 155-196 1-40 (215)
170 PRK06995 flhF flagellar biosyn 94.9 0.07 1.5E-06 54.8 7.3 95 112-220 205-299 (484)
171 PRK14973 DNA topoisomerase I; 94.9 0.064 1.4E-06 59.2 7.4 60 78-137 804-864 (936)
172 cd02028 UMPK_like Uridine mono 94.9 0.025 5.4E-07 50.1 3.5 40 173-219 1-40 (179)
173 PF05625 PAXNEB: PAXNEB protei 94.9 0.025 5.4E-07 55.9 3.9 62 234-295 225-303 (363)
174 cd02020 CMPK Cytidine monophos 94.9 0.023 4.9E-07 47.1 3.1 25 173-197 1-25 (147)
175 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.9 0.029 6.4E-07 50.2 4.0 28 167-194 26-53 (218)
176 PRK07721 fliI flagellum-specif 94.9 0.099 2.2E-06 53.1 8.2 43 150-194 139-181 (438)
177 cd03258 ABC_MetN_methionine_tr 94.9 0.03 6.4E-07 50.8 4.0 28 167-194 27-54 (233)
178 PRK00411 cdc6 cell division co 94.9 0.22 4.7E-06 48.6 10.3 52 174-230 58-109 (394)
179 TIGR03689 pup_AAA proteasome A 94.9 0.081 1.8E-06 54.7 7.5 47 167-215 212-258 (512)
180 PF05729 NACHT: NACHT domain 94.9 0.041 8.8E-07 46.0 4.5 25 173-197 2-26 (166)
181 cd01136 ATPase_flagellum-secre 94.8 0.09 1.9E-06 51.4 7.5 45 148-194 48-92 (326)
182 PRK14973 DNA topoisomerase I; 94.8 0.061 1.3E-06 59.4 6.9 53 79-131 879-932 (936)
183 TIGR01166 cbiO cobalt transpor 94.8 0.032 7E-07 49.0 4.0 27 167-193 14-40 (190)
184 PRK07165 F0F1 ATP synthase sub 94.8 0.047 1E-06 56.3 5.6 49 144-194 118-166 (507)
185 KOG0733|consensus 94.8 0.084 1.8E-06 55.7 7.4 94 158-254 534-653 (802)
186 CHL00059 atpA ATP synthase CF1 94.8 0.035 7.5E-07 57.0 4.6 48 145-194 117-164 (485)
187 PRK12402 replication factor C 94.8 0.047 1E-06 51.8 5.2 38 174-216 39-76 (337)
188 PRK08149 ATP synthase SpaL; Va 94.8 0.076 1.7E-06 53.8 7.0 45 148-194 130-174 (428)
189 PF00910 RNA_helicase: RNA hel 94.8 0.02 4.4E-07 46.3 2.4 22 175-196 2-23 (107)
190 PRK08181 transposase; Validate 94.8 0.024 5.2E-07 53.9 3.2 39 170-215 105-143 (269)
191 PF05621 TniB: Bacterial TniB 94.8 0.16 3.6E-06 49.2 8.9 92 160-253 49-185 (302)
192 TIGR03498 FliI_clade3 flagella 94.8 0.1 2.2E-06 52.7 7.8 47 146-194 117-163 (418)
193 cd00227 CPT Chloramphenicol (C 94.7 0.029 6.2E-07 49.0 3.4 26 170-195 1-26 (175)
194 KOG0736|consensus 94.7 0.038 8.3E-07 59.4 4.8 89 162-253 696-816 (953)
195 TIGR02546 III_secr_ATP type II 94.7 0.064 1.4E-06 54.2 6.3 49 145-195 121-169 (422)
196 KOG2373|consensus 94.7 0.03 6.4E-07 55.6 3.7 39 157-196 260-298 (514)
197 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.025 5.4E-07 49.1 3.0 34 173-218 1-34 (183)
198 PRK14088 dnaA chromosomal repl 94.7 0.021 4.5E-07 57.8 2.8 38 174-216 133-170 (440)
199 TIGR02322 phosphon_PhnN phosph 94.7 0.026 5.6E-07 49.1 3.0 25 171-195 1-25 (179)
200 cd03256 ABC_PhnC_transporter A 94.7 0.035 7.5E-07 50.5 4.0 27 167-193 23-49 (241)
201 PRK13343 F0F1 ATP synthase sub 94.7 0.039 8.5E-07 56.9 4.8 49 144-194 137-185 (502)
202 PRK14087 dnaA chromosomal repl 94.7 0.076 1.6E-06 53.9 6.8 38 174-216 144-181 (450)
203 PRK04196 V-type ATP synthase s 94.7 0.11 2.4E-06 53.0 8.0 50 145-196 119-168 (460)
204 cd02025 PanK Pantothenate kina 94.7 0.043 9.4E-07 50.3 4.6 44 173-221 1-44 (220)
205 PF13555 AAA_29: P-loop contai 94.7 0.036 7.8E-07 41.6 3.3 19 171-189 23-41 (62)
206 COG2255 RuvB Holliday junction 94.7 0.038 8.3E-07 53.4 4.3 46 175-220 56-117 (332)
207 cd02023 UMPK Uridine monophosp 94.7 0.042 9.1E-07 48.6 4.4 35 173-216 1-35 (198)
208 cd01135 V_A-ATPase_B V/A-type 94.7 0.042 9.2E-07 52.6 4.6 51 144-196 44-94 (276)
209 PRK00300 gmk guanylate kinase; 94.7 0.028 6.1E-07 49.8 3.2 27 169-195 3-29 (205)
210 TIGR03608 L_ocin_972_ABC putat 94.7 0.038 8.2E-07 49.0 4.0 28 167-194 20-47 (206)
211 COG1102 Cmk Cytidylate kinase 94.7 0.099 2.1E-06 46.8 6.5 26 173-198 2-27 (179)
212 cd03214 ABC_Iron-Siderophores_ 94.6 0.039 8.4E-07 48.4 4.0 28 167-194 21-48 (180)
213 PF00485 PRK: Phosphoribulokin 94.6 0.026 5.5E-07 50.2 2.9 24 173-196 1-24 (194)
214 cd03224 ABC_TM1139_LivF_branch 94.6 0.035 7.6E-07 49.8 3.8 27 167-193 22-48 (222)
215 TIGR02640 gas_vesic_GvpN gas v 94.6 0.053 1.1E-06 50.8 5.1 42 170-221 20-61 (262)
216 PF13238 AAA_18: AAA domain; P 94.6 0.03 6.4E-07 45.0 3.0 20 175-194 2-21 (129)
217 COG1122 CbiO ABC-type cobalt t 94.6 0.064 1.4E-06 50.0 5.6 28 166-193 25-52 (235)
218 TIGR03864 PQQ_ABC_ATP ABC tran 94.6 0.04 8.6E-07 50.2 4.1 28 167-194 23-50 (236)
219 CHL00195 ycf46 Ycf46; Provisio 94.6 0.12 2.6E-06 53.2 8.0 32 167-198 255-286 (489)
220 TIGR01042 V-ATPase_V1_A V-type 94.6 0.066 1.4E-06 56.1 6.1 61 144-215 201-261 (591)
221 cd03225 ABC_cobalt_CbiO_domain 94.6 0.04 8.6E-07 49.1 4.0 28 167-194 23-50 (211)
222 PRK14527 adenylate kinase; Pro 94.6 0.04 8.6E-07 48.7 3.9 28 169-196 4-31 (191)
223 cd03246 ABCC_Protease_Secretio 94.6 0.047 1E-06 47.5 4.3 28 167-194 24-51 (173)
224 PRK13540 cytochrome c biogenes 94.6 0.048 1E-06 48.5 4.4 27 167-193 23-49 (200)
225 PRK06696 uridine kinase; Valid 94.5 0.08 1.7E-06 48.2 6.0 44 171-221 22-65 (223)
226 TIGR02315 ABC_phnC phosphonate 94.5 0.041 8.9E-07 50.1 4.0 27 167-193 24-50 (243)
227 TIGR01360 aden_kin_iso1 adenyl 94.5 0.029 6.2E-07 48.6 2.9 25 171-195 3-27 (188)
228 PRK13648 cbiO cobalt transport 94.5 0.041 8.9E-07 51.4 4.1 28 167-194 31-58 (269)
229 cd03247 ABCC_cytochrome_bd The 94.5 0.044 9.6E-07 47.8 4.1 28 167-194 24-51 (178)
230 cd03296 ABC_CysA_sulfate_impor 94.5 0.042 9.1E-07 50.2 4.1 28 167-194 24-51 (239)
231 COG0572 Udk Uridine kinase [Nu 94.5 0.087 1.9E-06 48.9 6.1 26 170-195 7-32 (218)
232 cd03263 ABC_subfamily_A The AB 94.5 0.042 9.1E-07 49.3 4.0 28 167-194 24-51 (220)
233 PF09848 DUF2075: Uncharacteri 94.5 0.096 2.1E-06 51.0 6.8 44 172-220 2-45 (352)
234 PRK08727 hypothetical protein; 94.5 0.033 7.2E-07 51.3 3.4 38 172-216 42-79 (233)
235 cd03226 ABC_cobalt_CbiO_domain 94.5 0.043 9.3E-07 48.9 4.0 28 167-194 22-49 (205)
236 PRK09493 glnQ glutamine ABC tr 94.5 0.044 9.5E-07 50.0 4.1 28 167-194 23-50 (240)
237 cd03301 ABC_MalK_N The N-termi 94.5 0.045 9.7E-07 48.9 4.1 28 167-194 22-49 (213)
238 COG4619 ABC-type uncharacteriz 94.5 0.076 1.6E-06 48.2 5.4 47 167-221 25-73 (223)
239 PRK07261 topology modulation p 94.5 0.034 7.4E-07 48.8 3.2 25 174-198 3-27 (171)
240 cd00820 PEPCK_HprK Phosphoenol 94.5 0.031 6.8E-07 46.2 2.8 25 168-192 12-36 (107)
241 cd03257 ABC_NikE_OppD_transpor 94.5 0.042 9E-07 49.4 3.9 28 167-194 27-54 (228)
242 PRK12377 putative replication 94.5 0.037 8E-07 52.0 3.6 36 173-215 103-138 (248)
243 cd03235 ABC_Metallic_Cations A 94.5 0.04 8.6E-07 49.3 3.7 28 167-194 21-48 (213)
244 TIGR02211 LolD_lipo_ex lipopro 94.4 0.044 9.6E-07 49.2 4.0 28 167-194 27-54 (221)
245 cd03219 ABC_Mj1267_LivG_branch 94.4 0.041 9E-07 49.9 3.8 28 167-194 22-49 (236)
246 TIGR03263 guanyl_kin guanylate 94.4 0.034 7.3E-07 48.2 3.0 24 171-194 1-24 (180)
247 PTZ00301 uridine kinase; Provi 94.4 0.058 1.3E-06 49.4 4.7 24 172-195 4-27 (210)
248 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.044 9.5E-07 49.3 3.9 27 167-193 26-52 (220)
249 PRK10584 putative ABC transpor 94.4 0.048 1E-06 49.3 4.1 28 167-194 32-59 (228)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.048 1E-06 46.4 3.9 28 167-194 22-49 (144)
251 cd03250 ABCC_MRP_domain1 Domai 94.4 0.048 1E-06 48.5 4.1 28 167-194 27-54 (204)
252 cd03298 ABC_ThiQ_thiamine_tran 94.4 0.047 1E-06 48.8 4.0 28 167-194 20-47 (211)
253 cd03259 ABC_Carb_Solutes_like 94.4 0.049 1.1E-06 48.7 4.1 27 167-193 22-48 (213)
254 PRK03846 adenylylsulfate kinas 94.4 0.055 1.2E-06 48.2 4.4 40 169-215 22-61 (198)
255 COG2256 MGS1 ATPase related to 94.4 0.065 1.4E-06 53.9 5.2 37 158-196 37-73 (436)
256 TIGR01040 V-ATPase_V1_B V-type 94.4 0.19 4E-06 51.5 8.6 50 145-196 117-166 (466)
257 PTZ00454 26S protease regulato 94.3 0.044 9.4E-07 54.9 4.0 30 167-196 175-204 (398)
258 smart00763 AAA_PrkA PrkA AAA d 94.3 0.058 1.3E-06 53.5 4.8 28 169-196 76-103 (361)
259 TIGR01277 thiQ thiamine ABC tr 94.3 0.046 1E-06 49.0 3.8 29 167-195 20-48 (213)
260 cd03228 ABCC_MRP_Like The MRP 94.3 0.053 1.2E-06 47.1 4.1 28 167-194 24-51 (171)
261 cd03216 ABC_Carb_Monos_I This 94.3 0.051 1.1E-06 47.1 4.0 28 167-194 22-49 (163)
262 PRK03839 putative kinase; Prov 94.3 0.041 8.9E-07 48.0 3.4 25 173-197 2-26 (180)
263 PRK13768 GTPase; Provisional 94.3 0.052 1.1E-06 50.7 4.3 38 172-216 3-40 (253)
264 PRK14723 flhF flagellar biosyn 94.3 0.28 6.1E-06 53.1 10.2 95 112-220 134-228 (767)
265 cd03223 ABCD_peroxisomal_ALDP 94.3 0.052 1.1E-06 47.1 4.0 83 167-253 23-116 (166)
266 PRK06835 DNA replication prote 94.3 0.036 7.7E-07 54.2 3.2 38 172-216 184-221 (329)
267 cd03218 ABC_YhbG The ABC trans 94.3 0.05 1.1E-06 49.2 4.0 28 167-194 22-49 (232)
268 PF00406 ADK: Adenylate kinase 94.3 0.031 6.7E-07 47.4 2.5 20 176-195 1-20 (151)
269 PRK04192 V-type ATP synthase s 94.3 0.083 1.8E-06 55.4 6.0 60 145-215 203-262 (586)
270 PRK13541 cytochrome c biogenes 94.3 0.054 1.2E-06 48.0 4.1 28 167-194 22-49 (195)
271 cd02027 APSK Adenosine 5'-phos 94.3 0.043 9.4E-07 47.0 3.3 36 173-215 1-36 (149)
272 PRK09281 F0F1 ATP synthase sub 94.3 0.047 1E-06 56.3 4.2 49 144-194 137-185 (502)
273 PRK00131 aroK shikimate kinase 94.2 0.054 1.2E-06 46.0 3.9 27 169-195 2-28 (175)
274 cd03254 ABCC_Glucan_exporter_l 94.2 0.053 1.1E-06 49.0 4.0 28 167-194 25-52 (229)
275 TIGR03574 selen_PSTK L-seryl-t 94.2 0.037 8E-07 51.1 3.1 36 173-215 1-36 (249)
276 PRK06731 flhF flagellar biosyn 94.2 0.31 6.7E-06 46.4 9.4 76 170-254 74-162 (270)
277 cd03251 ABCC_MsbA MsbA is an e 94.2 0.053 1.2E-06 49.1 4.1 28 167-194 24-51 (234)
278 PRK13538 cytochrome c biogenes 94.2 0.052 1.1E-06 48.4 4.0 28 167-194 23-50 (204)
279 TIGR00960 3a0501s02 Type II (G 94.2 0.036 7.9E-07 49.6 3.0 28 167-194 25-52 (216)
280 PRK06526 transposase; Provisio 94.2 0.026 5.7E-07 53.1 2.1 38 170-214 97-134 (254)
281 PRK10895 lipopolysaccharide AB 94.2 0.05 1.1E-06 49.6 3.9 28 167-194 25-52 (241)
282 PRK06921 hypothetical protein; 94.2 0.054 1.2E-06 51.2 4.2 39 171-215 117-155 (266)
283 cd02019 NK Nucleoside/nucleoti 94.2 0.042 9E-07 41.1 2.8 21 174-194 2-22 (69)
284 TIGR03238 dnd_assoc_3 dnd syst 94.2 0.093 2E-06 54.0 6.1 53 160-221 18-73 (504)
285 cd03230 ABC_DR_subfamily_A Thi 94.2 0.056 1.2E-06 47.0 4.0 28 167-194 22-49 (173)
286 TIGR01026 fliI_yscN ATPase Fli 94.2 0.18 3.8E-06 51.3 8.1 44 149-194 143-186 (440)
287 PRK11629 lolD lipoprotein tran 94.2 0.055 1.2E-06 49.2 4.1 28 167-194 31-58 (233)
288 TIGR00362 DnaA chromosomal rep 94.2 0.032 7E-07 55.2 2.8 39 172-215 137-175 (405)
289 cd03253 ABCC_ATM1_transporter 94.2 0.055 1.2E-06 49.1 4.1 28 167-194 23-50 (236)
290 COG1136 SalX ABC-type antimicr 94.2 0.056 1.2E-06 50.3 4.1 26 167-192 27-52 (226)
291 cd03294 ABC_Pro_Gly_Bertaine T 94.2 0.055 1.2E-06 50.6 4.1 28 167-194 46-73 (269)
292 PRK07667 uridine kinase; Provi 94.2 0.073 1.6E-06 47.5 4.8 38 172-216 18-55 (193)
293 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.058 1.3E-06 40.6 3.6 23 174-196 2-24 (99)
294 PRK02118 V-type ATP synthase s 94.2 0.22 4.8E-06 50.6 8.6 77 146-225 117-213 (436)
295 cd03260 ABC_PstB_phosphate_tra 94.1 0.07 1.5E-06 48.2 4.6 29 167-195 22-50 (227)
296 TIGR02323 CP_lyasePhnK phospho 94.1 0.057 1.2E-06 49.7 4.1 28 167-194 25-52 (253)
297 PRK07952 DNA replication prote 94.1 0.056 1.2E-06 50.7 4.1 36 173-215 101-136 (244)
298 PRK10771 thiQ thiamine transpo 94.1 0.054 1.2E-06 49.2 3.9 28 167-194 21-48 (232)
299 cd01128 rho_factor Transcripti 94.1 0.1 2.2E-06 49.1 5.8 36 159-196 6-41 (249)
300 TIGR03410 urea_trans_UrtE urea 94.1 0.054 1.2E-06 49.0 3.9 28 167-194 22-49 (230)
301 TIGR02673 FtsE cell division A 94.1 0.041 8.8E-07 49.2 3.0 27 167-193 24-50 (214)
302 cd03229 ABC_Class3 This class 94.1 0.061 1.3E-06 47.0 4.1 27 167-193 22-48 (178)
303 cd03262 ABC_HisP_GlnQ_permease 94.1 0.042 9.1E-07 49.0 3.1 28 167-194 22-49 (213)
304 TIGR02324 CP_lyasePhnL phospho 94.1 0.061 1.3E-06 48.5 4.1 28 167-194 30-57 (224)
305 PF03029 ATP_bind_1: Conserved 94.1 0.051 1.1E-06 50.6 3.7 21 176-196 1-21 (238)
306 cd03290 ABCC_SUR1_N The SUR do 94.1 0.064 1.4E-06 48.2 4.2 28 167-194 23-50 (218)
307 PRK11264 putative amino-acid A 94.0 0.063 1.4E-06 49.2 4.2 28 167-194 25-52 (250)
308 TIGR02982 heterocyst_DevA ABC 94.0 0.063 1.4E-06 48.4 4.1 26 168-193 28-53 (220)
309 cd02021 GntK Gluconate kinase 94.0 0.04 8.6E-07 46.4 2.6 22 173-194 1-22 (150)
310 PRK14250 phosphate ABC transpo 94.0 0.06 1.3E-06 49.4 4.0 28 167-194 25-52 (241)
311 PRK10247 putative ABC transpor 94.0 0.064 1.4E-06 48.7 4.1 28 167-194 29-56 (225)
312 PRK11248 tauB taurine transpor 94.0 0.059 1.3E-06 50.1 4.0 28 167-194 23-50 (255)
313 cd03252 ABCC_Hemolysin The ABC 94.0 0.061 1.3E-06 48.9 4.0 28 167-194 24-51 (237)
314 PRK06315 type III secretion sy 94.0 0.059 1.3E-06 54.8 4.2 49 145-195 140-188 (442)
315 PRK13650 cbiO cobalt transport 94.0 0.058 1.3E-06 50.8 4.0 28 167-194 29-56 (279)
316 cd03215 ABC_Carb_Monos_II This 94.0 0.06 1.3E-06 47.2 3.8 28 167-194 22-49 (182)
317 PRK11701 phnK phosphonate C-P 94.0 0.062 1.3E-06 49.7 4.1 28 167-194 28-55 (258)
318 PRK00149 dnaA chromosomal repl 94.0 0.039 8.4E-07 55.6 2.9 39 173-216 150-188 (450)
319 TIGR01184 ntrCD nitrate transp 94.0 0.061 1.3E-06 49.0 3.9 27 168-194 8-34 (230)
320 PRK13646 cbiO cobalt transport 93.9 0.06 1.3E-06 50.9 3.9 29 166-194 28-56 (286)
321 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.9 0.066 1.4E-06 48.7 4.1 28 167-194 25-52 (238)
322 cd03248 ABCC_TAP TAP, the Tran 93.9 0.076 1.7E-06 47.9 4.5 28 167-194 36-63 (226)
323 cd03266 ABC_NatA_sodium_export 93.9 0.065 1.4E-06 48.0 4.0 27 167-193 27-53 (218)
324 cd03269 ABC_putative_ATPase Th 93.9 0.048 1E-06 48.7 3.0 28 167-194 22-49 (210)
325 TIGR01043 ATP_syn_A_arch ATP s 93.9 0.11 2.3E-06 54.5 6.0 61 144-215 197-257 (578)
326 PRK01172 ski2-like helicase; P 93.9 0.13 2.8E-06 54.4 6.8 55 79-133 614-669 (674)
327 COG1072 CoaA Panthothenate kin 93.9 0.69 1.5E-05 44.4 10.9 99 105-221 24-127 (283)
328 TIGR03771 anch_rpt_ABC anchore 93.9 0.075 1.6E-06 48.2 4.4 27 168-194 3-29 (223)
329 PRK13638 cbiO cobalt transport 93.9 0.059 1.3E-06 50.3 3.8 27 167-193 23-49 (271)
330 COG1474 CDC6 Cdc6-related prot 93.9 0.31 6.7E-06 48.4 8.9 65 160-231 33-97 (366)
331 cd03222 ABC_RNaseL_inhibitor T 93.9 0.065 1.4E-06 47.7 3.8 28 167-194 21-48 (177)
332 PF01637 Arch_ATPase: Archaeal 93.9 0.026 5.5E-07 49.7 1.2 43 170-219 19-61 (234)
333 PRK13632 cbiO cobalt transport 93.9 0.067 1.4E-06 50.1 4.1 28 167-194 31-58 (271)
334 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.9 0.067 1.4E-06 48.6 4.0 28 167-194 44-71 (224)
335 TIGR02928 orc1/cdc6 family rep 93.9 0.14 3E-06 49.3 6.4 58 173-231 42-99 (365)
336 cd03261 ABC_Org_Solvent_Resist 93.9 0.048 1E-06 49.6 3.0 28 167-194 22-49 (235)
337 cd03300 ABC_PotA_N PotA is an 93.9 0.073 1.6E-06 48.4 4.2 29 167-195 22-50 (232)
338 PRK10908 cell division protein 93.9 0.072 1.6E-06 48.0 4.1 27 167-193 24-50 (222)
339 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.074 1.6E-06 47.4 4.2 28 167-194 30-57 (207)
340 PRK06793 fliI flagellum-specif 93.8 0.071 1.5E-06 54.1 4.4 43 151-195 138-180 (432)
341 COG3854 SpoIIIAA ncharacterize 93.8 0.08 1.7E-06 50.1 4.4 47 168-216 133-180 (308)
342 COG0563 Adk Adenylate kinase a 93.8 0.053 1.2E-06 48.4 3.2 25 174-198 3-27 (178)
343 cd03265 ABC_DrrA DrrA is the A 93.8 0.051 1.1E-06 48.9 3.1 27 167-193 22-48 (220)
344 PRK12422 chromosomal replicati 93.8 0.038 8.2E-07 56.1 2.5 35 174-215 144-178 (445)
345 COG1123 ATPase components of v 93.8 0.14 3E-06 53.3 6.5 27 167-193 313-339 (539)
346 TIGR03324 alt_F1F0_F1_al alter 93.8 0.058 1.3E-06 55.5 3.8 48 145-194 138-185 (497)
347 PRK13635 cbiO cobalt transport 93.8 0.068 1.5E-06 50.4 4.0 28 167-194 29-56 (279)
348 TIGR01189 ccmA heme ABC export 93.8 0.073 1.6E-06 47.2 4.0 28 167-194 22-49 (198)
349 TIGR03411 urea_trans_UrtD urea 93.8 0.069 1.5E-06 48.7 3.9 28 167-194 24-51 (242)
350 TIGR02769 nickel_nikE nickel i 93.8 0.068 1.5E-06 49.8 3.9 28 167-194 33-60 (265)
351 PRK13649 cbiO cobalt transport 93.8 0.067 1.5E-06 50.1 3.9 28 167-194 29-56 (280)
352 cd03244 ABCC_MRP_domain2 Domai 93.8 0.053 1.1E-06 48.7 3.1 28 167-194 26-53 (221)
353 PRK13647 cbiO cobalt transport 93.8 0.07 1.5E-06 50.1 4.0 28 167-194 27-54 (274)
354 cd03268 ABC_BcrA_bacitracin_re 93.7 0.053 1.1E-06 48.3 3.0 28 167-194 22-49 (208)
355 TIGR01242 26Sp45 26S proteasom 93.7 0.069 1.5E-06 52.2 4.1 29 167-195 152-180 (364)
356 PRK13539 cytochrome c biogenes 93.7 0.075 1.6E-06 47.6 4.0 28 167-194 24-51 (207)
357 PRK14247 phosphate ABC transpo 93.7 0.052 1.1E-06 49.8 3.0 29 167-195 25-53 (250)
358 PRK03992 proteasome-activating 93.7 0.063 1.4E-06 53.3 3.8 29 167-195 161-189 (389)
359 TIGR03005 ectoine_ehuA ectoine 93.7 0.074 1.6E-06 49.0 4.0 28 167-194 22-49 (252)
360 TIGR00150 HI0065_YjeE ATPase, 93.7 0.082 1.8E-06 45.3 4.0 34 164-197 15-48 (133)
361 PRK11300 livG leucine/isoleuci 93.7 0.07 1.5E-06 49.0 3.8 28 167-194 27-54 (255)
362 cd03299 ABC_ModC_like Archeal 93.7 0.076 1.7E-06 48.5 4.0 27 168-194 22-48 (235)
363 PRK08154 anaerobic benzoate ca 93.7 0.28 6E-06 47.2 8.1 29 167-195 129-157 (309)
364 TIGR01978 sufC FeS assembly AT 93.7 0.054 1.2E-06 49.2 3.0 28 167-194 22-49 (243)
365 PRK15177 Vi polysaccharide exp 93.6 0.056 1.2E-06 48.9 3.0 28 167-194 9-36 (213)
366 TIGR02868 CydC thiol reductant 93.6 0.068 1.5E-06 54.5 4.0 28 167-194 357-384 (529)
367 PRK15112 antimicrobial peptide 93.6 0.076 1.6E-06 49.6 4.0 28 167-194 35-62 (267)
368 CHL00013 rpoA RNA polymerase a 93.6 0.11 2.4E-06 50.8 5.2 57 72-131 261-317 (327)
369 PRK13633 cobalt transporter AT 93.6 0.077 1.7E-06 49.9 4.0 28 167-194 32-59 (280)
370 PRK10575 iron-hydroxamate tran 93.6 0.07 1.5E-06 49.7 3.7 28 167-194 33-60 (265)
371 COG3840 ThiQ ABC-type thiamine 93.6 0.43 9.3E-06 43.9 8.5 41 167-215 21-61 (231)
372 PRK10078 ribose 1,5-bisphospho 93.6 0.058 1.3E-06 47.6 3.0 23 171-193 2-24 (186)
373 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.085 1.8E-06 44.9 3.9 28 167-194 21-48 (157)
374 PRK14531 adenylate kinase; Pro 93.6 0.066 1.4E-06 47.2 3.3 23 173-195 4-26 (183)
375 cd03245 ABCC_bacteriocin_expor 93.6 0.059 1.3E-06 48.4 3.0 28 167-194 26-53 (220)
376 PRK14530 adenylate kinase; Pro 93.6 0.068 1.5E-06 48.2 3.5 25 171-195 3-27 (215)
377 PRK15056 manganese/iron transp 93.6 0.08 1.7E-06 49.6 4.0 28 167-194 29-56 (272)
378 TIGR03740 galliderm_ABC gallid 93.5 0.088 1.9E-06 47.5 4.1 28 167-194 22-49 (223)
379 PRK08116 hypothetical protein; 93.5 0.078 1.7E-06 50.1 3.9 36 173-215 116-151 (268)
380 PF13191 AAA_16: AAA ATPase do 93.5 0.07 1.5E-06 45.6 3.4 27 170-196 23-49 (185)
381 PRK14267 phosphate ABC transpo 93.5 0.06 1.3E-06 49.5 3.0 28 167-194 26-53 (253)
382 PRK14274 phosphate ABC transpo 93.5 0.06 1.3E-06 49.8 3.0 29 167-195 34-62 (259)
383 PRK13645 cbiO cobalt transport 93.5 0.076 1.7E-06 50.1 3.8 28 167-194 33-60 (289)
384 PLN03210 Resistant to P. syrin 93.5 0.14 2.9E-06 57.7 6.3 40 157-196 193-232 (1153)
385 PRK13644 cbiO cobalt transport 93.5 0.08 1.7E-06 49.7 3.9 28 167-194 24-51 (274)
386 PF02562 PhoH: PhoH-like prote 93.5 0.1 2.2E-06 47.8 4.5 44 160-213 13-56 (205)
387 PRK13634 cbiO cobalt transport 93.5 0.082 1.8E-06 50.1 3.9 29 166-194 28-56 (290)
388 TIGR00968 3a0106s01 sulfate AB 93.5 0.091 2E-06 48.0 4.1 28 167-194 22-49 (237)
389 PRK10744 pstB phosphate transp 93.5 0.061 1.3E-06 49.9 3.0 29 167-195 35-63 (260)
390 cd03267 ABC_NatA_like Similar 93.5 0.087 1.9E-06 48.2 4.0 28 167-194 43-70 (236)
391 PLN00020 ribulose bisphosphate 93.5 0.078 1.7E-06 53.1 3.9 32 166-197 143-174 (413)
392 COG1157 FliI Flagellar biosynt 93.4 0.3 6.5E-06 49.4 8.0 49 148-198 142-190 (441)
393 TIGR02770 nickel_nikD nickel i 93.4 0.061 1.3E-06 48.9 3.0 28 168-195 9-36 (230)
394 PF07724 AAA_2: AAA domain (Cd 93.4 0.14 3.1E-06 45.2 5.2 39 171-215 3-41 (171)
395 cd03238 ABC_UvrA The excision 93.4 0.063 1.4E-06 47.7 2.9 25 167-191 17-41 (176)
396 PF08433 KTI12: Chromatin asso 93.4 0.059 1.3E-06 51.2 2.9 36 173-215 3-38 (270)
397 PRK14256 phosphate ABC transpo 93.4 0.063 1.4E-06 49.4 3.0 29 167-195 26-54 (252)
398 PRK14242 phosphate transporter 93.4 0.062 1.3E-06 49.4 3.0 28 167-194 28-55 (253)
399 cd03295 ABC_OpuCA_Osmoprotecti 93.4 0.064 1.4E-06 49.0 3.1 27 167-193 23-49 (242)
400 PRK10419 nikE nickel transport 93.4 0.086 1.9E-06 49.3 3.9 28 167-194 34-61 (268)
401 PRK13642 cbiO cobalt transport 93.4 0.087 1.9E-06 49.5 4.0 29 167-195 29-57 (277)
402 TIGR00750 lao LAO/AO transport 93.4 0.11 2.4E-06 49.6 4.8 40 169-215 32-71 (300)
403 PRK14255 phosphate ABC transpo 93.4 0.064 1.4E-06 49.3 3.0 27 167-193 27-53 (252)
404 PRK07196 fliI flagellum-specif 93.4 0.045 9.8E-07 55.5 2.2 46 147-194 133-178 (434)
405 cd03270 ABC_UvrA_I The excisio 93.4 0.07 1.5E-06 48.8 3.2 22 167-188 17-38 (226)
406 PRK14240 phosphate transporter 93.4 0.065 1.4E-06 49.2 3.0 28 167-194 25-52 (250)
407 PRK14235 phosphate transporter 93.4 0.066 1.4E-06 50.0 3.1 29 167-195 41-69 (267)
408 TIGR02881 spore_V_K stage V sp 93.4 0.057 1.2E-06 50.3 2.6 22 173-194 44-65 (261)
409 PRK14249 phosphate ABC transpo 93.4 0.066 1.4E-06 49.2 3.0 28 167-194 26-53 (251)
410 TIGR00972 3a0107s01c2 phosphat 93.3 0.067 1.5E-06 49.1 3.1 27 167-193 23-49 (247)
411 PRK09984 phosphonate/organopho 93.3 0.066 1.4E-06 49.6 3.0 28 167-194 26-53 (262)
412 PRK07594 type III secretion sy 93.3 0.11 2.4E-06 52.7 4.7 42 150-193 136-177 (433)
413 PLN03025 replication factor C 93.3 0.23 5.1E-06 47.6 6.8 23 174-196 37-59 (319)
414 TIGR00635 ruvB Holliday juncti 93.3 0.065 1.4E-06 50.5 2.9 23 174-196 33-55 (305)
415 cd03233 ABC_PDR_domain1 The pl 93.3 0.061 1.3E-06 48.1 2.6 28 167-194 29-56 (202)
416 PF14229 DUF4332: Domain of un 93.3 0.22 4.7E-06 41.9 5.8 40 76-115 52-92 (122)
417 PRK11831 putative ABC transpor 93.2 0.092 2E-06 49.1 3.9 28 167-194 29-56 (269)
418 PRK14241 phosphate transporter 93.2 0.068 1.5E-06 49.4 3.0 29 167-195 26-54 (258)
419 cd03232 ABC_PDR_domain2 The pl 93.2 0.067 1.5E-06 47.4 2.8 27 167-193 29-55 (192)
420 PRK14956 DNA polymerase III su 93.2 0.45 9.8E-06 49.0 9.0 26 171-196 40-65 (484)
421 PF02456 Adeno_IVa2: Adenoviru 93.2 0.17 3.7E-06 49.5 5.6 44 173-221 89-133 (369)
422 cd03231 ABC_CcmA_heme_exporter 93.2 0.1 2.2E-06 46.5 3.9 27 167-193 22-48 (201)
423 PRK13637 cbiO cobalt transport 93.2 0.095 2.1E-06 49.6 3.9 27 167-193 29-55 (287)
424 PRK13543 cytochrome c biogenes 93.2 0.073 1.6E-06 47.9 3.0 28 167-194 33-60 (214)
425 PRK14261 phosphate ABC transpo 93.1 0.072 1.6E-06 49.0 3.0 27 167-193 28-54 (253)
426 cd03234 ABCG_White The White s 93.1 0.072 1.6E-06 48.2 2.9 28 167-194 29-56 (226)
427 PF00437 T2SE: Type II/IV secr 93.1 0.13 2.8E-06 47.9 4.6 38 158-195 114-151 (270)
428 COG0541 Ffh Signal recognition 93.1 1.8 4E-05 44.1 13.0 126 87-230 11-153 (451)
429 PRK13643 cbiO cobalt transport 93.1 0.097 2.1E-06 49.6 3.8 28 167-194 28-55 (288)
430 PRK10253 iron-enterobactin tra 93.1 0.095 2.1E-06 48.8 3.7 28 167-194 29-56 (265)
431 PRK14238 phosphate transporter 93.1 0.076 1.6E-06 49.8 3.1 29 167-195 46-74 (271)
432 cd01428 ADK Adenylate kinase ( 93.1 0.078 1.7E-06 46.2 3.0 21 174-194 2-22 (194)
433 TIGR00763 lon ATP-dependent pr 93.1 0.23 4.9E-06 53.8 7.0 27 169-195 345-371 (775)
434 cd01130 VirB11-like_ATPase Typ 93.1 0.13 2.8E-06 45.5 4.4 28 167-194 21-48 (186)
435 PRK13639 cbiO cobalt transport 93.1 0.1 2.2E-06 49.0 3.8 27 167-193 24-50 (275)
436 PRK14963 DNA polymerase III su 93.1 0.23 4.9E-06 51.3 6.7 26 171-196 36-61 (504)
437 PRK11614 livF leucine/isoleuci 93.0 0.071 1.5E-06 48.5 2.7 27 167-193 27-53 (237)
438 PRK15093 antimicrobial peptide 93.0 0.13 2.7E-06 49.9 4.6 28 167-194 29-56 (330)
439 PRK13631 cbiO cobalt transport 93.0 0.1 2.2E-06 50.5 4.0 27 167-193 48-74 (320)
440 PTZ00361 26 proteosome regulat 93.0 0.09 1.9E-06 53.4 3.7 29 167-195 213-241 (438)
441 PRK14244 phosphate ABC transpo 93.0 0.079 1.7E-06 48.7 3.0 29 167-195 27-55 (251)
442 PRK10619 histidine/lysine/argi 93.0 0.11 2.5E-06 47.9 4.1 28 167-194 27-54 (257)
443 PRK06002 fliI flagellum-specif 93.0 0.052 1.1E-06 55.3 2.0 44 149-194 145-188 (450)
444 PRK15453 phosphoribulokinase; 93.0 0.15 3.2E-06 49.2 5.0 41 171-218 5-45 (290)
445 PRK10418 nikD nickel transport 93.0 0.079 1.7E-06 49.0 3.0 28 167-194 25-52 (254)
446 PRK14251 phosphate ABC transpo 93.0 0.081 1.8E-06 48.6 3.1 29 167-195 26-54 (251)
447 CHL00131 ycf16 sulfate ABC tra 93.0 0.072 1.6E-06 48.9 2.7 27 167-193 29-55 (252)
448 PRK07003 DNA polymerase III su 93.0 0.82 1.8E-05 49.7 10.9 27 170-196 37-63 (830)
449 PRK11247 ssuB aliphatic sulfon 93.0 0.079 1.7E-06 49.5 3.0 28 167-194 34-61 (257)
450 PRK14239 phosphate transporter 93.0 0.08 1.7E-06 48.6 3.0 27 167-193 27-53 (252)
451 PRK00080 ruvB Holliday junctio 93.0 0.11 2.3E-06 50.1 4.0 23 173-195 53-75 (328)
452 PRK14270 phosphate ABC transpo 93.0 0.082 1.8E-06 48.6 3.1 28 167-194 26-53 (251)
453 PRK11124 artP arginine transpo 93.0 0.082 1.8E-06 48.3 3.1 28 167-194 24-51 (242)
454 cd02024 NRK1 Nicotinamide ribo 93.0 0.069 1.5E-06 48.1 2.5 22 173-194 1-22 (187)
455 PF01656 CbiA: CobQ/CobB/MinD/ 93.0 0.12 2.5E-06 44.7 3.9 38 173-217 1-38 (195)
456 PRK14262 phosphate ABC transpo 93.0 0.083 1.8E-06 48.5 3.1 27 167-193 25-51 (250)
457 cd02037 MRP-like MRP (Multiple 93.0 0.13 2.7E-06 44.5 4.0 38 173-217 2-39 (169)
458 TIGR02880 cbbX_cfxQ probable R 92.9 0.14 2.9E-06 48.8 4.6 25 171-195 58-82 (284)
459 TIGR01188 drrA daunorubicin re 92.9 0.11 2.5E-06 49.4 4.0 27 167-193 15-41 (302)
460 PRK14273 phosphate ABC transpo 92.9 0.084 1.8E-06 48.6 3.1 28 167-194 29-56 (254)
461 TIGR03029 EpsG chain length de 92.9 0.33 7.2E-06 45.2 7.1 39 170-215 103-141 (274)
462 PRK11022 dppD dipeptide transp 92.9 0.078 1.7E-06 51.4 2.9 28 167-194 29-56 (326)
463 COG1222 RPT1 ATP-dependent 26S 92.9 0.13 2.7E-06 51.3 4.3 42 151-194 167-208 (406)
464 cd03114 ArgK-like The function 92.9 0.12 2.6E-06 44.5 3.8 35 174-215 2-36 (148)
465 KOG0743|consensus 92.9 0.081 1.8E-06 53.7 3.1 37 158-194 215-258 (457)
466 PRK11144 modC molybdate transp 92.9 0.11 2.5E-06 50.7 4.1 28 167-194 20-47 (352)
467 PHA02624 large T antigen; Prov 92.9 0.14 3E-06 54.1 4.8 29 166-194 426-454 (647)
468 KOG1532|consensus 92.9 0.65 1.4E-05 45.1 8.9 84 165-253 13-122 (366)
469 PRK13705 plasmid-partitioning 92.9 0.33 7.2E-06 48.3 7.4 102 75-214 41-143 (388)
470 TIGR01287 nifH nitrogenase iro 92.8 0.15 3.3E-06 47.4 4.8 38 173-217 2-39 (275)
471 PRK13652 cbiO cobalt transport 92.8 0.12 2.6E-06 48.5 4.1 28 167-194 26-53 (277)
472 PRK14265 phosphate ABC transpo 92.8 0.086 1.9E-06 49.5 3.1 27 167-193 42-68 (274)
473 PRK09825 idnK D-gluconate kina 92.8 0.094 2E-06 46.4 3.1 25 170-194 2-26 (176)
474 PRK13641 cbiO cobalt transport 92.8 0.12 2.5E-06 49.0 3.9 27 167-193 29-55 (287)
475 TIGR03873 F420-0_ABC_ATP propo 92.8 0.11 2.4E-06 47.9 3.7 28 167-194 23-50 (256)
476 cd03237 ABC_RNaseL_inhibitor_d 92.8 0.1 2.2E-06 48.4 3.5 29 166-194 20-48 (246)
477 cd00046 DEXDc DEAD-like helica 92.8 0.15 3.2E-06 40.2 3.9 37 174-215 3-39 (144)
478 PRK12608 transcription termina 92.8 0.13 2.9E-06 51.3 4.5 42 153-196 117-158 (380)
479 PRK14532 adenylate kinase; Pro 92.8 0.097 2.1E-06 45.9 3.2 33 174-218 3-35 (188)
480 PRK06547 hypothetical protein; 92.8 0.099 2.1E-06 46.3 3.2 24 171-194 15-38 (172)
481 KOG0989|consensus 92.8 0.1 2.2E-06 50.9 3.5 27 169-195 55-81 (346)
482 COG3265 GntK Gluconate kinase 92.8 0.36 7.7E-06 42.6 6.5 63 178-253 2-73 (161)
483 TIGR01313 therm_gnt_kin carboh 92.8 0.072 1.6E-06 45.5 2.2 20 175-194 2-21 (163)
484 TIGR03754 conj_TOL_TraD conjug 92.8 0.16 3.5E-06 53.9 5.2 55 170-232 180-234 (643)
485 PRK14253 phosphate ABC transpo 92.8 0.093 2E-06 48.1 3.1 28 167-194 25-52 (249)
486 TIGR01186 proV glycine betaine 92.7 0.12 2.5E-06 51.3 3.9 29 167-195 15-43 (363)
487 PHA02530 pseT polynucleotide k 92.7 0.096 2.1E-06 49.2 3.2 24 172-195 3-26 (300)
488 PRK09544 znuC high-affinity zi 92.7 0.091 2E-06 48.8 3.0 28 167-194 26-53 (251)
489 TIGR01288 nodI ATP-binding ABC 92.7 0.13 2.8E-06 49.1 4.1 28 167-194 26-53 (303)
490 PRK14259 phosphate ABC transpo 92.7 0.091 2E-06 49.2 3.0 28 167-194 35-62 (269)
491 cd03283 ABC_MutS-like MutS-lik 92.7 0.1 2.2E-06 47.0 3.2 26 170-195 24-49 (199)
492 PRK15079 oligopeptide ABC tran 92.7 0.12 2.5E-06 50.4 3.8 28 167-194 43-70 (331)
493 cd03271 ABC_UvrA_II The excisi 92.7 0.1 2.2E-06 49.4 3.3 26 167-192 17-42 (261)
494 TIGR02142 modC_ABC molybdenum 92.7 0.13 2.8E-06 50.4 4.1 28 167-194 19-46 (354)
495 PRK14236 phosphate transporter 92.7 0.093 2E-06 49.1 3.1 28 167-194 47-74 (272)
496 PRK14237 phosphate transporter 92.7 0.094 2E-06 49.0 3.1 29 167-195 42-70 (267)
497 PRK06217 hypothetical protein; 92.7 0.12 2.5E-06 45.5 3.5 26 173-198 3-28 (183)
498 PRK13636 cbiO cobalt transport 92.7 0.13 2.7E-06 48.6 4.0 28 167-194 28-55 (283)
499 PRK10536 hypothetical protein; 92.7 0.14 3.1E-06 48.7 4.2 37 171-213 74-110 (262)
500 PRK14721 flhF flagellar biosyn 92.7 0.28 6E-06 49.7 6.6 28 169-196 189-216 (420)
No 1
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=1.1e-59 Score=455.48 Aligned_cols=254 Identities=50% Similarity=0.809 Sum_probs=234.8
Q ss_pred ccccccccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccch
Q psy13674 60 AVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLT 139 (315)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~t 139 (315)
+.++++.+++|++|++|+.|+.+||++.+++||+++||+|++||+.+++++|++++|+|+.+|++|++.+++.++++|.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~t 94 (344)
T PLN03187 15 LVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFIT 94 (344)
T ss_pred hhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCc
Confidence 44555666677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 140 AAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 140 A~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
|.+++++++...+|+||+++||++|+|||++|+||||+|+|||||||||+|+|+++++|.+ .||.+++|+|||||++|+
T Consensus 95 a~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~-~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 95 GSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTE-MGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred HHHHHhhhccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchh-hCCCCceEEEEEcCCCCC
Confidence 9999998888999999999999999999999999999999999999999999999999977 778889999999999999
Q ss_pred hhhHHHHHHHHHHH----------------------------------------------------------------HH
Q psy13674 220 PLLNIIAIASLVTL----------------------------------------------------------------VG 235 (315)
Q Consensus 220 ~~~Rl~~iaer~~l----------------------------------------------------------------L~ 235 (315)
|+ ||.++++++++ |.
T Consensus 174 pe-Rl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~ 252 (344)
T PLN03187 174 PD-RIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLA 252 (344)
T ss_pred HH-HHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHH
Confidence 99 99999987532 45
Q ss_pred HHHHHHHHHhhcc-cEEEEE-----------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEE
Q psy13674 236 SRLPMSFHITRED-LIVFFP-----------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMF 303 (315)
Q Consensus 236 ~~~~~L~~LA~e~-iaVV~~-----------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F 303 (315)
++++.|+++|++| ++||.+ |.+++.+|+||++|+|++++|++|+|.+|+.|+++|+|||++|++++.|
T Consensus 253 ~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~~~~Rl~l~k~~~~~R~~~v~ksp~lp~~~~~f 332 (344)
T PLN03187 253 QMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVFDAPNLPEAEAEF 332 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhheeeeEEEEEEcCCCCeEEEEEEECCCCCCceEEE
Confidence 6778899999999 999853 2245678999999999999999999988999999999999999999999
Q ss_pred EEeCCCcccCCC
Q psy13674 304 AITNGGIADAKD 315 (315)
Q Consensus 304 ~It~~GI~~~~~ 315 (315)
.|+++||+|++|
T Consensus 333 ~It~~GI~d~~~ 344 (344)
T PLN03187 333 QITSGGIMDAKD 344 (344)
T ss_pred EEeCCCccCCCC
Confidence 999999999875
No 2
>KOG1434|consensus
Probab=100.00 E-value=4.1e-59 Score=430.47 Aligned_cols=251 Identities=52% Similarity=0.761 Sum_probs=237.4
Q ss_pred ccccccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHH
Q psy13674 62 EEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAA 141 (315)
Q Consensus 62 ~~~~~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ 141 (315)
|..+++.+.+-+.+|+.|+.+|++..++.||+..|++|++.++..+.+.|..++||++.+++++.+++.+.++.+|.||.
T Consensus 6 e~~~~~~~~~l~~ai~~l~~~gi~~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~ 85 (335)
T KOG1434|consen 6 EMGRDDVSFPLSPAIEELQVHGINVTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTAL 85 (335)
T ss_pred cccccccccccchhHHHHHhcccchhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHH
Confidence 34455566777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 142 QVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 142 ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
|++++++....|+|||..||.+|||||+..+|||++|+||+||||||++||+++|+|.+ +||.+|+++|||||++|+|+
T Consensus 86 e~le~r~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~-~Gg~~Gk~ifIDTEgtFrpd 164 (335)
T KOG1434|consen 86 ELLEQRKTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPRE-MGGVGGKAIFIDTEGTFRPD 164 (335)
T ss_pred HHHhhhhccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchh-hCCCCceEEEEecCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHH-----------------------------------------------------------------HHH
Q psy13674 222 LNIIAIASLVTL-----------------------------------------------------------------VGS 236 (315)
Q Consensus 222 ~Rl~~iaer~~l-----------------------------------------------------------------L~~ 236 (315)
|+.+||++|++ |++
T Consensus 165 -Ri~~IAe~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ 243 (335)
T KOG1434|consen 165 -RIKDIAERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQ 243 (335)
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHH
Confidence 99999998632 889
Q ss_pred HHHHHHHHhhcc-cEEEE------------EccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEE
Q psy13674 237 RLPMSFHITRED-LIVFF------------PLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMF 303 (315)
Q Consensus 237 ~~~~L~~LA~e~-iaVV~------------~~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F 303 (315)
++..|.+||++| +||++ +|...+.+|+||++|+|++++|++|+|++|++|++++.|||.+|+.+|.|
T Consensus 244 ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgrg~eR~Akl~dSP~mpe~e~~y 323 (335)
T KOG1434|consen 244 MLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGRGDERVAKLYDSPSMPEAEASY 323 (335)
T ss_pred HHHHHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCCcceeeeecccCCCCCcceEEE
Confidence 999999999999 99995 24456689999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCC
Q psy13674 304 AITNGGIADAK 314 (315)
Q Consensus 304 ~It~~GI~~~~ 314 (315)
.|+.+||+|+.
T Consensus 324 ~It~~Gi~dss 334 (335)
T KOG1434|consen 324 VITPGGIRDSS 334 (335)
T ss_pred EEcCCccccCC
Confidence 99999999975
No 3
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=3e-56 Score=426.88 Aligned_cols=236 Identities=64% Similarity=0.915 Sum_probs=220.5
Q ss_pred chHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceec
Q psy13674 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITT 155 (315)
Q Consensus 76 i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isT 155 (315)
|+.|+..||++.+++||+++||+|++||+.+++++|++++|+|+.+|+++++++++.++.+|.||.+++++++...+|+|
T Consensus 1 ~~~~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isT 80 (313)
T TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITT 80 (313)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH--
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL-- 233 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l-- 233 (315)
|+++||++|+||+++|+||||+|+||+||||||+|+|+++++|.+ .|+.+++|+|||||++|+++ |+.++++++++
T Consensus 81 G~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~-~gg~~~~vvYIdtE~~f~~e-Ri~~~a~~~g~d~ 158 (313)
T TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPRE-MGGGNGKVAYIDTEGTFRPD-RIRAIAERFGVDP 158 (313)
T ss_pred CCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchh-hcCCCCeEEEEEcCCCCCHH-HHHHHHHHcCCCh
Confidence 999999999999999999999999999999999999999999987 77888999999999999999 99999987531
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhhcc-cE
Q psy13674 234 --------------------------------------------------------------VGSRLPMSFHITRED-LI 250 (315)
Q Consensus 234 --------------------------------------------------------------L~~~~~~L~~LA~e~-ia 250 (315)
|.+++..|+++|++| ++
T Consensus 159 ~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~va 238 (313)
T TIGR02238 159 DAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVA 238 (313)
T ss_pred HHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 446778899999999 99
Q ss_pred EEEE------------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCcccC
Q psy13674 251 VFFP------------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADA 313 (315)
Q Consensus 251 VV~~------------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~~~ 313 (315)
||.+ |.+++.+|+||++|+|++++||+|+|.+++.|+++|+|||++|+++|.|.|+++||+|+
T Consensus 239 vvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~~~~sp~~p~~~~~f~i~~~Gi~~~ 313 (313)
T TIGR02238 239 VFVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313 (313)
T ss_pred EEEECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCCCeEEEEEeeCCCCCCeEEEEEEeCCcccCC
Confidence 8852 22456899999999999999999999888999999999999999999999999999985
No 4
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=426.74 Aligned_cols=252 Identities=56% Similarity=0.874 Sum_probs=232.6
Q ss_pred ccccccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHH
Q psy13674 62 EEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAA 141 (315)
Q Consensus 62 ~~~~~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ 141 (315)
.++++++++..|++|+.|+.+||++.+++||+++||+|++||+.+++++|++++|||+.+|++|+++++++++.+|.||.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~ 88 (337)
T PTZ00035 9 QEEEEEEEAEGFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISAT 88 (337)
T ss_pred cccchhhcccCCccHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHH
Confidence 34556666777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 142 QVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 142 ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++++++.+..+|+||+++||++|+||+++|+||||+|+||+||||||+++|+++++|.+ .|+.+++|+|||||++|+++
T Consensus 89 ~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~-~gg~~g~vvyIdtE~~f~~e 167 (337)
T PTZ00035 89 EYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIE-QGGGEGKVLYIDTEGTFRPE 167 (337)
T ss_pred HHHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccc-cCCCCceEEEEEccCCCCHH
Confidence 99999989999999999999999999999999999999999999999999999999977 77888999999999999999
Q ss_pred hHHHHHHHHHHH----------------------------------------------------------------HHHH
Q psy13674 222 LNIIAIASLVTL----------------------------------------------------------------VGSR 237 (315)
Q Consensus 222 ~Rl~~iaer~~l----------------------------------------------------------------L~~~ 237 (315)
|+.++++++++ |.++
T Consensus 168 -ri~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~ 246 (337)
T PTZ00035 168 -RIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKF 246 (337)
T ss_pred -HHHHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHH
Confidence 99999877421 4567
Q ss_pred HHHHHHHhhcc-cEEEEE------------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEE
Q psy13674 238 LPMSFHITRED-LIVFFP------------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFA 304 (315)
Q Consensus 238 ~~~L~~LA~e~-iaVV~~------------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~ 304 (315)
++.|+++|++| ++||.+ |.+++.+|+||++|+|++++||+|+|.+++.|+++|+|||++|++++.|.
T Consensus 247 ~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p~~~~~f~ 326 (337)
T PTZ00035 247 LRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAVFA 326 (337)
T ss_pred HHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCCCeeEEEEEECCCCCCeeEEEE
Confidence 88899999999 998853 22456799999999999999999999989999999999999999999999
Q ss_pred EeCCCcccCCC
Q psy13674 305 ITNGGIADAKD 315 (315)
Q Consensus 305 It~~GI~~~~~ 315 (315)
|+++||.+++|
T Consensus 327 It~~Gi~~~~~ 337 (337)
T PTZ00035 327 ISEGGIIDAKD 337 (337)
T ss_pred EeCCccccCCC
Confidence 99999999875
No 5
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=8.1e-55 Score=421.42 Aligned_cols=254 Identities=49% Similarity=0.721 Sum_probs=232.2
Q ss_pred ccccccccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccch
Q psy13674 60 AVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLT 139 (315)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~t 139 (315)
++.+++++++-..+++|+.|+.+||++.+++||+++||+|++||+.+++++|++++|||+.++++++..+.+.+..+|.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~~~~~~~t 91 (342)
T PLN03186 12 AMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFTT 91 (342)
T ss_pred hccchhhcccccCCccHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhcccccch
Confidence 44455666666677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 140 AAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 140 A~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
+.++++.+....+++||+++||++|+||+++|.||||+|+||+|||+||+++|+++++|.. .|+.+++|+|||||++|+
T Consensus 92 a~~~~~~~~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~-~gg~~g~vlyIdtE~~f~ 170 (342)
T PLN03186 92 ASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLD-QGGGEGKAMYIDTEGTFR 170 (342)
T ss_pred HHHHhhcccCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchh-hCCCCceEEEEECCCCcc
Confidence 9999999888999999999999999999999999999999999999999999999999876 677788999999999999
Q ss_pred hhhHHHHHHHHHHH----------------------------------------------------------------HH
Q psy13674 220 PLLNIIAIASLVTL----------------------------------------------------------------VG 235 (315)
Q Consensus 220 ~~~Rl~~iaer~~l----------------------------------------------------------------L~ 235 (315)
++ |+.+|++++++ |.
T Consensus 171 ~e-Rl~qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~ 249 (342)
T PLN03186 171 PQ-RLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLG 249 (342)
T ss_pred HH-HHHHHHHHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHH
Confidence 99 99999987531 45
Q ss_pred HHHHHHHHHhhcc-cEEEEEc-----------cCCC-CcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEE
Q psy13674 236 SRLPMSFHITRED-LIVFFPL-----------NADP-KKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAM 302 (315)
Q Consensus 236 ~~~~~L~~LA~e~-iaVV~~~-----------~~~~-~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~ 302 (315)
++++.|+++|++| ++||.+. .+++ .+|+||++|+|++++||+|+|.+|+.|.++|.|||++|++++.
T Consensus 250 ~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~~~~R~~~v~ksp~~p~~e~~ 329 (342)
T PLN03186 250 KFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEAEAR 329 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecCCCeEEEEEEECCCCCCeEEE
Confidence 7788899999999 9999532 1233 4999999999999999999998899999999999999999999
Q ss_pred EEEeCCCcccCCC
Q psy13674 303 FAITNGGIADAKD 315 (315)
Q Consensus 303 F~It~~GI~~~~~ 315 (315)
|.|+++||++++|
T Consensus 330 F~I~~~Gi~~~~~ 342 (342)
T PLN03186 330 FSISSEGVTDVKD 342 (342)
T ss_pred EEEECCceecCCC
Confidence 9999999999875
No 6
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=2.6e-50 Score=386.25 Aligned_cols=238 Identities=52% Similarity=0.796 Sum_probs=219.6
Q ss_pred chHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceec
Q psy13674 76 VDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITT 155 (315)
Q Consensus 76 i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isT 155 (315)
|++|+.+||++.+++||+++||+|++||+.+++.+|+++++||+.++++++..+.+.+...+.++.++++.+....+++|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~~~~~t 80 (316)
T TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTT 80 (316)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcccccceeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH--
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL-- 233 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l-- 233 (315)
|+++||++|+||+++|.||||+|+||+|||+||+++|+++++|.. .|+.+++|+|||+|++|+++ |+.++++++++
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~-~Gg~~~~vvyIdtE~~f~~~-Rl~~ia~~~~~~~ 158 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPID-QGGGEGKALYIDTEGTFRPE-RLLAIAERYGLNP 158 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhh-cCCCCceEEEEECCCCCCHH-HHHHHHHHcCCCh
Confidence 999999999999999999999999999999999999999998876 66777899999999999999 99998876421
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhhcc-cE
Q psy13674 234 --------------------------------------------------------------VGSRLPMSFHITRED-LI 250 (315)
Q Consensus 234 --------------------------------------------------------------L~~~~~~L~~LA~e~-ia 250 (315)
|.++++.|+++|++| ++
T Consensus 159 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~va 238 (316)
T TIGR02239 159 EDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVA 238 (316)
T ss_pred HHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 346677899999999 99
Q ss_pred EEEE-------------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCcccCCC
Q psy13674 251 VFFP-------------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315 (315)
Q Consensus 251 VV~~-------------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~~~~~ 315 (315)
||.+ |.+++.+|+||++|+|++++||+|+|.+++.|+++|.|||++|++++.|.|+++||++++|
T Consensus 239 vv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~~~R~~~v~ksp~~p~~~~~f~i~~~Gi~~~~~ 316 (316)
T TIGR02239 239 VVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316 (316)
T ss_pred EEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCCCeEEEEEEECCCCCCeEEEEEEeCCceecCCC
Confidence 8852 2245679999999999999999999988899999999999999999999999999999975
No 7
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=5.5e-47 Score=353.38 Aligned_cols=178 Identities=43% Similarity=0.638 Sum_probs=159.2
Q ss_pred cccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 135 ~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
.+|.||.++++++++...|+||++.||++|+|||++|.||||+|+||+||||||+|+|+++++|.+ .||.+++|+||||
T Consensus 2 ~~f~ta~~~~~~~~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~-~~g~~~~vvyidT 80 (256)
T PF08423_consen 2 MGFQTAAELLEQRKRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEE-IGGLGGKVVYIDT 80 (256)
T ss_dssp TSSEEHHHHHHHHHTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGC-TTSSSSEEEEEES
T ss_pred CCcccHHHHHHHhhcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccc-cccCCCceEEEeC
Confidence 579999999999999999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred CCCCChhhHHHHHHHHHHH-------------------------------------------------------------
Q psy13674 215 ENTLYPLLNIIAIASLVTL------------------------------------------------------------- 233 (315)
Q Consensus 215 E~~F~~~~Rl~~iaer~~l------------------------------------------------------------- 233 (315)
|++|+++ |+.+|++++++
T Consensus 81 e~~f~~~-Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R 159 (256)
T PF08423_consen 81 EGTFSPE-RLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAER 159 (256)
T ss_dssp SSSS-HH-HHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHH
T ss_pred CCCCCHH-HHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHH
Confidence 9999999 99999987531
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEc------------cCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCC
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPL------------NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMP 297 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~------------~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p 297 (315)
|.++++.|++||++| +|||++. .++..+|+||++|+|++++||+|+|.+|+.|.++|.|||++|
T Consensus 160 ~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p 239 (256)
T PF08423_consen 160 QRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRGSERVATIVKSPSLP 239 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECSTTEEEEEEEECSSSS
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCCCeEEEEEeECCCCC
Confidence 788899999999999 9999632 234578999999999999999999999999999999999999
Q ss_pred CeeEEEEEeCCCcccCC
Q psy13674 298 EAEAMFAITNGGIADAK 314 (315)
Q Consensus 298 ~~~~~F~It~~GI~~~~ 314 (315)
+.++.|.|+++||+|++
T Consensus 240 ~~~~~f~It~~Gi~d~~ 256 (256)
T PF08423_consen 240 EGSASFQITEDGIRDVK 256 (256)
T ss_dssp SEEEEEEEETTEEEE--
T ss_pred CceEEEEEeCCCccCCC
Confidence 99999999999999974
No 8
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=8.8e-45 Score=344.69 Aligned_cols=229 Identities=44% Similarity=0.717 Sum_probs=206.9
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhcc-ccchHHHHHHhhcCccceecCChhH
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN-SFLTAAQVVEKRKQVFKITTGSTEL 160 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~-~~~tA~ell~~~~~~~~isTG~~~L 160 (315)
+||++..+++|.++||.|++||+..++.+|.+++|++.+.++++++.+.+.+.. ++.|+.++++.++....++||++.|
T Consensus 5 ~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg~~~l 84 (310)
T TIGR02236 5 PGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTGSKEL 84 (310)
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCCCHHH
Confidence 699999999999999999999999999999999999999999999998877654 5789999988888899999999999
Q ss_pred HHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH-------
Q psy13674 161 DKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL------- 233 (315)
Q Consensus 161 D~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l------- 233 (315)
|++|+||++.|+||||+|+||+||||||+|+|+++++|.+ .|+.+++|+|||||++|+++ |+.++++++++
T Consensus 85 D~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~-~g~~~~~~~yi~te~~f~~~-rl~~~~~~~gl~~~~~~~ 162 (310)
T TIGR02236 85 DELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEE-KGGLGGKAVYIDTENTFRPE-RIMQMAEARGLDPDEVLK 162 (310)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcc-cCCCcceEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhh
Confidence 9999999999999999999999999999999999999876 66777899999999999999 99988765321
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHhhcc-cEEEE
Q psy13674 234 -----------------------------------------------------------VGSRLPMSFHITRED-LIVFF 253 (315)
Q Consensus 234 -----------------------------------------------------------L~~~~~~L~~LA~e~-iaVV~ 253 (315)
|++++..|+++|++| ++||.
T Consensus 163 ~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~ 242 (310)
T TIGR02236 163 NIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVV 242 (310)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEE
Confidence 334557799999999 99986
Q ss_pred Ec---------cCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCccc
Q psy13674 254 PL---------NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312 (315)
Q Consensus 254 ~~---------~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~~ 312 (315)
+. .+++.+|+||++|+|++++||+|+|.+++.|.++|.|||++|++++.|.|+++||++
T Consensus 243 tnqv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~~~~R~~~~~k~~~~~~~~~~f~i~~~Gi~~ 310 (310)
T TIGR02236 243 TNQVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310 (310)
T ss_pred eceeeecCccccCccccCCcchhhhhheeEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCccC
Confidence 32 245679999999999999999999988889999999999999999999999999975
No 9
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=1.5e-44 Score=345.14 Aligned_cols=236 Identities=42% Similarity=0.675 Sum_probs=212.5
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhcc-ccchHHHHHHhhcCccc
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN-SFLTAAQVVEKRKQVFK 152 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~-~~~tA~ell~~~~~~~~ 152 (315)
-||..+. ||++...++|.++||.|++||+.+++.+|.+++|+++..++++++.+...++. ++.|+.+++.+++....
T Consensus 6 ~~l~~l~--gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~~ 83 (317)
T PRK04301 6 KDLEDLP--GVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVGK 83 (317)
T ss_pred ccHhhcC--CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCCc
Confidence 3555554 89999999999999999999999999999999999999999999999887766 78999999888888899
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHH
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT 232 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~ 232 (315)
++||++.||++|+||++.|.+|||+|+||+|||+||+|+|+++++|.+ .|+.+++|+|||||++|+++ |+.+++++++
T Consensus 84 ~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~-~gg~~~~~~yi~te~~f~~~-rl~~~~~~~g 161 (317)
T PRK04301 84 ITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEE-KGGLEGKAVYIDTEGTFRPE-RIEQMAEALG 161 (317)
T ss_pred cCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccc-cCCCCceEEEEeCCCCcCHH-HHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999876 67788999999999999999 9999887642
Q ss_pred H-----------------------------------------------------------------HHHHHHHHHHHhhc
Q psy13674 233 L-----------------------------------------------------------------VGSRLPMSFHITRE 247 (315)
Q Consensus 233 l-----------------------------------------------------------------L~~~~~~L~~LA~e 247 (315)
+ |.+++..|+++|++
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~ 241 (317)
T PRK04301 162 LDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADL 241 (317)
T ss_pred CChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23466789999999
Q ss_pred c-cEEEEEc---------cCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCcccC
Q psy13674 248 D-LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADA 313 (315)
Q Consensus 248 ~-iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~~~ 313 (315)
+ ++||.+. .+++.+|++|.+|+|++++||+|+|.+|+.|.++|.|||++|++++.|.|+++||+++
T Consensus 242 ~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~~~~R~~~v~k~~~~~~~~~~f~I~~~Gi~~~ 317 (317)
T PRK04301 242 YNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRDA 317 (317)
T ss_pred hCCEEEEeceEEeccccccCccccCCcchHhHhheeEEEEEEecCCCceEEEEEeCCCCCCceEEEEEeCCcccCC
Confidence 9 9988632 2445789999999999999999999888999999999999999999999999999874
No 10
>KOG1564|consensus
Probab=100.00 E-value=1e-34 Score=271.64 Aligned_cols=210 Identities=24% Similarity=0.264 Sum_probs=164.9
Q ss_pred hHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhH-hccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEec
Q psy13674 100 IKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI-CDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFG 178 (315)
Q Consensus 100 v~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~-~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G 178 (315)
.-|++.+++.+|.++...+..+.-.++..+... ...-+..... ....+...++|||..||++|+|||+++.||||+|
T Consensus 32 ~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~~~~~~e~~~~--~s~~~~~~lttgc~~LD~~L~GGi~~~giTEi~G 109 (351)
T KOG1564|consen 32 KVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQNLKLKPENLCS--RSKTNRSKLTTGCVALDECLRGGIPTDGITEICG 109 (351)
T ss_pred cccceecChhHHHHHHHhccHHHHHHHHHHHHHHHHhcchhhhc--cccCCchhcccccHHHHHHhcCCcccccHHHHhh
Confidence 346666777777777777776665544433221 1111111100 0011235699999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHH---------H----------------
Q psy13674 179 EFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT---------L---------------- 233 (315)
Q Consensus 179 ~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~---------l---------------- 233 (315)
++|+||||||||+|..+|+|.. .||.+++++||.||++|+.. ||.++...+. +
T Consensus 110 eSg~GKtQL~lQL~L~VQLp~~-~GGL~~~~vYI~TE~~fP~r-RL~qL~~~~~~rp~~~~~~~~~~Npgd~IFv~~~~d 187 (351)
T KOG1564|consen 110 ESGCGKTQLLLQLSLCVQLPRS-HGGLGGGAVYICTESPFPTR-RLHQLSHTLPQRPNPEKELNYNDNPGDHIFVENVHD 187 (351)
T ss_pred ccCCcHHHHHHHHHHHhhCchh-hCCCCCceEEEEcCCCCcHH-HHHHHHHhcccCCCcchhhhhccCCCceEEEEeccc
Confidence 9999999999999999999998 99999999999999999999 9998875420 0
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhcc-cEEEEEcc------
Q psy13674 234 --------------------------------------------------VGSRLPMSFHITRED-LIVFFPLN------ 256 (315)
Q Consensus 234 --------------------------------------------------L~~~~~~L~~LA~e~-iaVV~~~~------ 256 (315)
|.+++..|+.||.+| .|||...+
T Consensus 188 ~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~ 267 (351)
T KOG1564|consen 188 VDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDRVE 267 (351)
T ss_pred hhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeeccccccc
Confidence 778888999999999 88884211
Q ss_pred ------------------CCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCeeEEEEEeCCC
Q psy13674 257 ------------------ADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAEAMFAITNGG 309 (315)
Q Consensus 257 ------------------~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~~~F~It~~G 309 (315)
.+...|++|.+|+|.+.||+++.|.. ...|.++|+.||++|++.|.|.||..|
T Consensus 268 ~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~k~~~sa~~~~~~R~l~VvySp~~p~~~~~~~It~eG 347 (351)
T KOG1564|consen 268 TSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRSTKNCDSAVSRSAKRTLRVVYSPYLPPSSCEFMITAEG 347 (351)
T ss_pred cccccCCccccchhhccccccccccccceeccccceeeeeeeccccccchhhcccceEEEEEecCCCCCcceEEEEecce
Confidence 12268999999999999999999831 247999999999999999999999999
Q ss_pred cccC
Q psy13674 310 IADA 313 (315)
Q Consensus 310 I~~~ 313 (315)
|..+
T Consensus 348 I~~~ 351 (351)
T KOG1564|consen 348 ICAV 351 (351)
T ss_pred EecC
Confidence 9864
No 11
>KOG1433|consensus
Probab=100.00 E-value=1.6e-36 Score=291.18 Aligned_cols=232 Identities=41% Similarity=0.566 Sum_probs=209.0
Q ss_pred cccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHh
Q psy13674 67 EDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEK 146 (315)
Q Consensus 67 ~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~ 146 (315)
++.+.+|.|+..+...++++.++.+|+.++|.|+.++...+.+++..++++++....++...+....+. ++.
T Consensus 15 ~~~~~~~~~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~--------~~~ 86 (326)
T KOG1433|consen 15 EEIGLSPAPVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPM--------LQL 86 (326)
T ss_pred HhcccCccchhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHH--------HHh
Confidence 444455559999999999999999999999999999999999999999999999999998888765533 366
Q ss_pred hcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH
Q psy13674 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA 226 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ 226 (315)
+.....|+||+.+||++|+||++.|.+|||+|+|||||||||+.+++.+ |+.+++++|||++++|++. |+.+
T Consensus 87 ~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~-------~gge~~~l~IDs~s~~~~~-~~~~ 158 (326)
T KOG1433|consen 87 RSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC-------GGGEGKVLYIDTESTFRLE-RLTE 158 (326)
T ss_pred hccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc-------cCCcceEEEEecchhcccc-hhhh
Confidence 7788999999999999999999999999999999999999999999876 4789999999999999999 9999
Q ss_pred HHHHHHH----------------------------------------------------------------HHHHHHHHH
Q psy13674 227 IASLVTL----------------------------------------------------------------VGSRLPMSF 242 (315)
Q Consensus 227 iaer~~l----------------------------------------------------------------L~~~~~~L~ 242 (315)
|++++++ +.++++.|+
T Consensus 159 ia~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~l~ 238 (326)
T KOG1433|consen 159 IAGRSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRSLK 238 (326)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccccccccccchHHHHHHHHHHHHHHH
Confidence 9887432 677889999
Q ss_pred HHhhcc-cEEEE------------EccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCC
Q psy13674 243 HITRED-LIVFF------------PLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGG 309 (315)
Q Consensus 243 ~LA~e~-iaVV~------------~~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~G 309 (315)
+++++| ++||+ +|..+.++|++|++|+|.+++|+++++.+|+.|.+++.++|++|+.++.|.|+.+|
T Consensus 239 ~la~~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~g~~~~~k~~~s~~l~e~~~~~~i~~~g 318 (326)
T KOG1433|consen 239 KLADEFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGKGERRICKIADSPCLPEAEAVFAITEDG 318 (326)
T ss_pred HHHHhcCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhccccchhhhhhcCCCCCcchhHHHHHhhh
Confidence 999999 98884 34556789999999999999999999989999999999999999999999999999
Q ss_pred cccCC
Q psy13674 310 IADAK 314 (315)
Q Consensus 310 I~~~~ 314 (315)
|++..
T Consensus 319 ~~~~~ 323 (326)
T KOG1433|consen 319 ISDQR 323 (326)
T ss_pred hhhhh
Confidence 98864
No 12
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-33 Score=264.10 Aligned_cols=192 Identities=31% Similarity=0.424 Sum_probs=167.1
Q ss_pred hCCCHHHHHHHHHHHHhHhc-cccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 115 KGFSEAKVDKIKEACMKICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 115 ~gis~~~v~ki~~~~~~~~~-~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
.+.+..++.++..++.+... .++..+......+.....|+||+..||++|+||+|+|.|||||||+||||||||||+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~ 82 (279)
T COG0468 3 QGIDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVA 82 (279)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHH
Confidence 35567778888877777664 34777776666666799999999999999999999999999999999999999999999
Q ss_pred HccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHH-HH-------------H--------------------------
Q psy13674 194 TAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASL-VT-------------L-------------------------- 233 (315)
Q Consensus 194 ~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer-~~-------------l-------------------------- 233 (315)
++|+ .+++|+|||||++|+|+ |+.+++.. .+ +
T Consensus 83 ~aq~-------~g~~a~fIDtE~~l~p~-r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~ 154 (279)
T COG0468 83 NAQK-------PGGKAAFIDTEHALDPE-RAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALV 154 (279)
T ss_pred Hhhc-------CCCeEEEEeCCCCCCHH-HHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccc
Confidence 9997 35599999999999999 99999876 21 0
Q ss_pred ----------------HHHHHHHHHHHhhcc-cEEEE---------EccCCCCcccccccccccccEEEEEEec------
Q psy13674 234 ----------------VGSRLPMSFHITRED-LIVFF---------PLNADPKKPVGGNIMAHASTTRISLRKG------ 281 (315)
Q Consensus 234 ----------------L~~~~~~L~~LA~e~-iaVV~---------~~~~~~~~PalG~~wah~~~tRl~L~k~------ 281 (315)
|++.++.|.++|++| ++|+. .+++++.+|.+|++..|+.++|+.++|.
T Consensus 155 r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~~~ 234 (279)
T COG0468 155 RAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLKED 234 (279)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccccccc
Confidence 788899999999999 88874 2445789999999999999999999998
Q ss_pred CCCeEEEEEEECCCCCCe-eEEEEEeCCCcccCC
Q psy13674 282 RGETRIAKIYDSPDMPEA-EAMFAITNGGIADAK 314 (315)
Q Consensus 282 ~g~~R~~~I~KSp~~p~~-~~~F~It~~GI~~~~ 314 (315)
.|..|.++++|+|++|++ ++.|.|+.+|+.+.+
T Consensus 235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~ 268 (279)
T COG0468 235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDRE 268 (279)
T ss_pred cCCeEEEEEEeCCCCCCCceeEEEeecCcccccc
Confidence 799999999999999999 699999999998764
No 13
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=4.2e-32 Score=245.89 Aligned_cols=157 Identities=55% Similarity=0.816 Sum_probs=137.6
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHH
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT 232 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~ 232 (315)
++||++.||++|+||++.|.++||+|+||+|||+||+++|+++++|.. +++.+++|+|||+|++|+++ |+.++++.++
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~-~~g~~~~viyi~~e~~~~~~-rl~~~~~~~~ 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIE-LGGLEGKAVYIDTEGTFRPE-RLVQIAERFG 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccc-cCCCCccEEEEeCCCCcCHH-HHHHHHHHhc
Confidence 589999999999999999999999999999999999999999888765 56678999999999999998 9988876532
Q ss_pred H-----------------------------------------------------------------HHHHHHHHHHHhhc
Q psy13674 233 L-----------------------------------------------------------------VGSRLPMSFHITRE 247 (315)
Q Consensus 233 l-----------------------------------------------------------------L~~~~~~L~~LA~e 247 (315)
. +.++++.|+++|++
T Consensus 79 ~~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~ 158 (235)
T cd01123 79 LDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE 158 (235)
T ss_pred cChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 34567889999999
Q ss_pred c-cEEEEEcc------------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCcc
Q psy13674 248 D-LIVFFPLN------------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311 (315)
Q Consensus 248 ~-iaVV~~~~------------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~ 311 (315)
+ ++||.+.. ++..+|++|.+|+|++++|+++++.++..|.++|+|+|..|...++|+|+++||+
T Consensus 159 ~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~~r~~~i~k~~~~~~~~~~f~It~~Gi~ 235 (235)
T cd01123 159 FNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGEERIAKIVDSPHLPEGEAVFAITEEGIR 235 (235)
T ss_pred hCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCCceEEEEeeCCCCCCceEEEEEeCCccC
Confidence 9 99886321 2345899999999999999999988778899999999999987899999999985
No 14
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.96 E-value=1.3e-28 Score=221.83 Aligned_cols=149 Identities=50% Similarity=0.790 Sum_probs=127.3
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHH
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT 232 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~ 232 (315)
|+||+++||++|+||++.|.+|||+|+||+|||+||+++|.+++.+.+ .++...+|+|||+|++|+++ |+.++++.++
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~-~~g~~~~v~yi~~e~~~~~~-rl~~~~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGE-LGGLEGKVVYIDTEGAFRPE-RLVQLAVRFG 78 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccc-cCCCcceEEEEecCCCCCHH-HHHHHHHHhc
Confidence 689999999999999999999999999999999999999999887655 55677999999999999999 9888765421
Q ss_pred H----------------------------------------------------------------HHHHHHHHHHHhhcc
Q psy13674 233 L----------------------------------------------------------------VGSRLPMSFHITRED 248 (315)
Q Consensus 233 l----------------------------------------------------------------L~~~~~~L~~LA~e~ 248 (315)
. +.++++.|+++|+++
T Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~ 158 (226)
T cd01393 79 LDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKF 158 (226)
T ss_pred cchhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 344667799999999
Q ss_pred -cEEEEEcc---------CCCCcccccccccccccEEEEEEecCC---CeEEEEEEECCCCCCeeEEE
Q psy13674 249 -LIVFFPLN---------ADPKKPVGGNIMAHASTTRISLRKGRG---ETRIAKIYDSPDMPEAEAMF 303 (315)
Q Consensus 249 -iaVV~~~~---------~~~~~PalG~~wah~~~tRl~L~k~~g---~~R~~~I~KSp~~p~~~~~F 303 (315)
++||.+.. ++..+|+||..|+|++++|++|+|.++ ..|.++++|||.+|++++.|
T Consensus 159 ~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~~~~~~ 226 (226)
T cd01393 159 NVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGIIGERRIAKVVKSPALPEAEAEF 226 (226)
T ss_pred CcEEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCCccCcEEEEEEEeCCCCCCccccC
Confidence 88885321 234689999999999999999998765 68999999999999988765
No 15
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.95 E-value=2.4e-27 Score=214.64 Aligned_cols=154 Identities=36% Similarity=0.540 Sum_probs=129.8
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHH
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASL 230 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer 230 (315)
.+|+||+++||++|+||++.|++|+|+|+||+|||+||+++|.+++. .+.+|+|||+| .|+++ |+.++++.
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~-------~~~~v~yi~~e-~~~~~-r~~~~~~~ 73 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK-------NGKKVIYIDTE-GLSPE-RFKQIAGE 73 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEECC-CCCHH-HHHHHHhh
Confidence 46999999999999999999999999999999999999999998863 46899999999 89988 88766542
Q ss_pred ----H----------------------------H--H--------------------------HHHHHHHHHHHhhcc-c
Q psy13674 231 ----V----------------------------T--L--------------------------VGSRLPMSFHITRED-L 249 (315)
Q Consensus 231 ----~----------------------------~--l--------------------------L~~~~~~L~~LA~e~-i 249 (315)
+ . + +.+++..|+++|+++ +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v 153 (225)
T PRK09361 74 DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDL 153 (225)
T ss_pred ChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 0 0 233345688999999 9
Q ss_pred EEEEEcc------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCee-EEEEEeCCCcccC
Q psy13674 250 IVFFPLN------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAE-AMFAITNGGIADA 313 (315)
Q Consensus 250 aVV~~~~------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~ 313 (315)
+||.+.. ....+|++|+.|+|++++++.|++.+++.|.+.+.|+|..|++. ++|+|+++||..+
T Consensus 154 ~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ii~l~~~~~~~r~~~i~k~~~~~~~~~~~f~It~~Gi~~~ 224 (225)
T PRK09361 154 AVVITNQVYSDIDSDGLRPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGESAEFRITDRGIEII 224 (225)
T ss_pred EEEEEccceecCCCCcccCCCcchhhhhccEEEEEEEccCCeEEEEEEECCCCCCCCeEEEEEeCCcEecC
Confidence 8886432 12457899999999999999999877889999999999998865 9999999999875
No 16
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.95 E-value=1.7e-26 Score=207.85 Aligned_cols=150 Identities=30% Similarity=0.452 Sum_probs=124.7
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH-
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV- 231 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~- 231 (315)
|+||+++||++|+||++.|.+++|+|+||+|||+||+++|.+++. .+++|+|||+|..|. + |+.++++..
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-------~g~~v~yi~~e~~~~-~-~~~~~~~~~~ 71 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-------QGKKVAYIDTEGLSS-E-RFRQIAGDRP 71 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEECCCCCH-H-HHHHHHhHCh
Confidence 689999999999999999999999999999999999999998752 578999999998886 5 776654320
Q ss_pred -------------------H----H------------------------------------HHHHHHHHHHHhhcc-cEE
Q psy13674 232 -------------------T----L------------------------------------VGSRLPMSFHITRED-LIV 251 (315)
Q Consensus 232 -------------------~----l------------------------------------L~~~~~~L~~LA~e~-iaV 251 (315)
. + +.+++..|+++|+++ ++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~v 151 (218)
T cd01394 72 ERAASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAV 151 (218)
T ss_pred HhhhcCEEEEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 0 0 344556688999999 988
Q ss_pred EEEcc------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCee-EEEEEeCCCcc
Q psy13674 252 FFPLN------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAE-AMFAITNGGIA 311 (315)
Q Consensus 252 V~~~~------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~-~~F~It~~GI~ 311 (315)
|.+.. ....+|.+|..|+|++++|+.|++.++..|.+.+.|+|..|+++ +.|+|+++||+
T Consensus 152 i~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~~~~r~~~~~~~~~~~~~~~~~f~It~~Gi~ 218 (218)
T cd01394 152 VITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLRVGTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred EEecCCEEcCCCCcccccCCcchhcceeEEEEEEEcCCCeEEEEEeeCCCCCCCceEEEEEeCCccC
Confidence 86432 24567999999999999999999987777777788888888776 99999999985
No 17
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.93 E-value=6.4e-25 Score=196.15 Aligned_cols=142 Identities=32% Similarity=0.560 Sum_probs=119.0
Q ss_pred HHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH--------
Q psy13674 160 LDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV-------- 231 (315)
Q Consensus 160 LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~-------- 231 (315)
||++|+||++.|.++||+|+||+|||+||++++.+.+. .+.+|+|||+|+ |+++ |+.++++.+
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-------~g~~v~yi~~e~-~~~~-rl~~~~~~~~~~~~~~i 71 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAAR-------QGKKVVYIDTEG-LSPE-RFKQIAEDRPERALSNF 71 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECCC-CCHH-HHHHHHHhChHHHhcCE
Confidence 79999999999999999999999999999999998752 468999999998 9999 988876531
Q ss_pred ---------H----H--------------------------------------HHHHHHHHHHHhhcc-cEEEEEcc---
Q psy13674 232 ---------T----L--------------------------------------VGSRLPMSFHITRED-LIVFFPLN--- 256 (315)
Q Consensus 232 ---------~----l--------------------------------------L~~~~~~L~~LA~e~-iaVV~~~~--- 256 (315)
. + +.+++..|+++|+++ ++||.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~ 151 (209)
T TIGR02237 72 IVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYT 151 (209)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEE
Confidence 0 0 233456688999999 88886422
Q ss_pred ---CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCee-EEEEEeCCCcc
Q psy13674 257 ---ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAE-AMFAITNGGIA 311 (315)
Q Consensus 257 ---~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~-~~F~It~~GI~ 311 (315)
.+...|++|+.|+|++++++.|++.+ ..|.+.|.|+|..|.+. +.|+||++||+
T Consensus 152 ~~~~~~~~~~gg~~~~~~~d~vi~l~~~~-~~r~~~i~k~~~~~~~~~~~f~It~~Gi~ 209 (209)
T TIGR02237 152 DVNNGTLRPLGGHLLEHWSKVILRLEKFR-GRRLATLEKHRSRPEGESVYFRITDDGIE 209 (209)
T ss_pred ecCCCCCcCCCcchhheeeeEEEEEEecC-CEEEEEEEECCCCCCCCeEEEEEeCCccC
Confidence 23468999999999999999999875 57888999999999765 99999999985
No 18
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.92 E-value=8.9e-25 Score=229.60 Aligned_cols=154 Identities=24% Similarity=0.403 Sum_probs=129.4
Q ss_pred hcCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH
Q psy13674 147 RKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII 225 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~ 225 (315)
+.+...|+||++.||.+|+ ||++.|+||||+|++|+|||+||++++++++. .+++|+|||+|++|+++ |..
T Consensus 35 ~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-------~G~~v~yId~E~t~~~~-~A~ 106 (790)
T PRK09519 35 RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-------AGGVAAFIDAEHALDPD-YAK 106 (790)
T ss_pred ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEECCccchhHH-HHH
Confidence 4577899999999999999 99999999999999999999999999998873 57899999999999976 544
Q ss_pred HHH---------------------HHH------H---------H---------------------HHHHHHHHHHHhhcc
Q psy13674 226 AIA---------------------SLV------T---------L---------------------VGSRLPMSFHITRED 248 (315)
Q Consensus 226 ~ia---------------------er~------~---------l---------------------L~~~~~~L~~LA~e~ 248 (315)
.+- +.+ . + +.++++.|.++++++
T Consensus 107 ~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~ 186 (790)
T PRK09519 107 KLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNS 186 (790)
T ss_pred HcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 320 000 0 0 245677788999999
Q ss_pred -cEEEEE---------ccCCCCcccccccccccccEEEEEEec---------CCCeEEEEEEECCCCCCeeEEEEEeCC
Q psy13674 249 -LIVFFP---------LNADPKKPVGGNIMAHASTTRISLRKG---------RGETRIAKIYDSPDMPEAEAMFAITNG 308 (315)
Q Consensus 249 -iaVV~~---------~~~~~~~PalG~~wah~~~tRl~L~k~---------~g~~R~~~I~KSp~~p~~~~~F~It~~ 308 (315)
++||.+ +++++.+|.+|+.|+|++++||+|+|. .|..|.++|+||+++|..++.|.|+.+
T Consensus 187 nvtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~~~~~kv~ks~cLpe~e~v~~i~tG 265 (790)
T PRK09519 187 GTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLAEGTRIFDPVTG 265 (790)
T ss_pred CCEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeeccccccCccccceEEEEEEEECCCCCCceEEEEecCC
Confidence 888853 335778999999999999999999974 478999999999999999999999854
No 19
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.91 E-value=2.4e-24 Score=207.52 Aligned_cols=159 Identities=30% Similarity=0.407 Sum_probs=129.8
Q ss_pred hcCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH
Q psy13674 147 RKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII 225 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~ 225 (315)
+....+++||++.||.+|+ ||+|.|.||||+||||+|||+||+++|++++. .++.|+|||+|++|++. ++.
T Consensus 30 ~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-------~g~~~vyId~E~~~~~~-~a~ 101 (325)
T cd00983 30 VQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-------LGGTVAFIDAEHALDPV-YAK 101 (325)
T ss_pred ccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEECccccHHHH-HHH
Confidence 3567899999999999999 99999999999999999999999999999873 57899999999998886 544
Q ss_pred HH---------------------HHHH------H------------------------------HHHHHHHHHHHHhhcc
Q psy13674 226 AI---------------------ASLV------T------------------------------LVGSRLPMSFHITRED 248 (315)
Q Consensus 226 ~i---------------------aer~------~------------------------------lL~~~~~~L~~LA~e~ 248 (315)
.+ ++.+ . +|.++++.|..++.++
T Consensus 102 ~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~ 181 (325)
T cd00983 102 KLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKS 181 (325)
T ss_pred HcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 32 1110 0 0335667788888999
Q ss_pred -cEEEEEc---------cCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEEe-C
Q psy13674 249 -LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAIT-N 307 (315)
Q Consensus 249 -iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~It-~ 307 (315)
++||.+. .+++..|.+|+.|.|++.+|+.++|.. |..+.++|+|++..|+.. ++|.|. +
T Consensus 182 ~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~p~~~~~~~i~~~ 261 (325)
T cd00983 182 NTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAPPFKTAEFDILFG 261 (325)
T ss_pred CCEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccccCCcccccEEEEEEEecccCCCCCceEEEEEcC
Confidence 8888532 246788999999999999999999853 456789999999999987 999998 6
Q ss_pred CCcccC
Q psy13674 308 GGIADA 313 (315)
Q Consensus 308 ~GI~~~ 313 (315)
.||.-.
T Consensus 262 ~Gi~~~ 267 (325)
T cd00983 262 EGISRE 267 (325)
T ss_pred cccchh
Confidence 687643
No 20
>PRK09354 recA recombinase A; Provisional
Probab=99.91 E-value=4.1e-24 Score=207.57 Aligned_cols=157 Identities=29% Similarity=0.427 Sum_probs=128.7
Q ss_pred CccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH
Q psy13674 149 QVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI 227 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i 227 (315)
...+|+||++.||.+|+ ||+|.|+||||+|++|+|||+||+|++++++. .++.|+|||+|++|++. ++..+
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-------~G~~~~yId~E~s~~~~-~a~~l 108 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-------AGGTAAFIDAEHALDPV-YAKKL 108 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEECCccchHHH-HHHHc
Confidence 57899999999999999 99999999999999999999999999999873 57999999999999886 54432
Q ss_pred ---------------------HHHH------H------------------------------HHHHHHHHHHHHhhcc-c
Q psy13674 228 ---------------------ASLV------T------------------------------LVGSRLPMSFHITRED-L 249 (315)
Q Consensus 228 ---------------------aer~------~------------------------------lL~~~~~~L~~LA~e~-i 249 (315)
++.+ . ++.++++.|..+++++ +
T Consensus 109 Gvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~i 188 (349)
T PRK09354 109 GVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 188 (349)
T ss_pred CCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 1000 0 0224466788888999 8
Q ss_pred EEEEE---------ccCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEEe-CCC
Q psy13674 250 IVFFP---------LNADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAIT-NGG 309 (315)
Q Consensus 250 aVV~~---------~~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~It-~~G 309 (315)
+||.+ +.+++..|.+|+.|.|++.+|+.|+|.. |..+.++|+|+...|+.. +.|.|. +.|
T Consensus 189 tvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~~r~~vvKnk~~~p~~~a~~~i~~~~G 268 (349)
T PRK09354 189 TVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEG 268 (349)
T ss_pred EEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccccCCceecceEEEEEEecccCCCCCceEEEEEcCCc
Confidence 88853 2346678999999999999999999752 456789999999999986 999999 889
Q ss_pred cccC
Q psy13674 310 IADA 313 (315)
Q Consensus 310 I~~~ 313 (315)
|.-.
T Consensus 269 i~~~ 272 (349)
T PRK09354 269 ISRE 272 (349)
T ss_pred cchh
Confidence 8643
No 21
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.90 E-value=1.9e-23 Score=201.09 Aligned_cols=158 Identities=27% Similarity=0.397 Sum_probs=128.8
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA 226 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ 226 (315)
.+..+++||++.||.+|+ ||+|.|.||||+|+||+|||+||++++.+++. .++.|+|||+|+++++. +...
T Consensus 31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~-------~g~~v~yId~E~~~~~~-~a~~ 102 (321)
T TIGR02012 31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK-------AGGTAAFIDAEHALDPV-YARK 102 (321)
T ss_pred ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEcccchhHHH-HHHH
Confidence 467899999999999999 99999999999999999999999999999874 57899999999988765 4332
Q ss_pred H---------------------HHHH------H------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 227 I---------------------ASLV------T------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 227 i---------------------aer~------~------------------------------lL~~~~~~L~~LA~e~- 248 (315)
+ ++.+ . ++.++++.|..+++++
T Consensus 103 lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~ 182 (321)
T TIGR02012 103 LGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSN 182 (321)
T ss_pred cCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 2 1100 0 0235677788899999
Q ss_pred cEEEEEc---------cCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEEe-CC
Q psy13674 249 LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAIT-NG 308 (315)
Q Consensus 249 iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~It-~~ 308 (315)
++||.+. .+++..|.+|+.|.|++.+|+.++|.. |..+.++|+|++..|+.. ++|.|. +.
T Consensus 183 ~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~~~p~~~~~~~i~~~~ 262 (321)
T TIGR02012 183 TTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKVAPPFKEAEFDILYGE 262 (321)
T ss_pred CEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCCCCCCCceEEEEEcCC
Confidence 8888532 245678999999999999999998742 457889999999999987 999999 88
Q ss_pred CcccC
Q psy13674 309 GIADA 313 (315)
Q Consensus 309 GI~~~ 313 (315)
||.-.
T Consensus 263 Gi~~~ 267 (321)
T TIGR02012 263 GISKL 267 (321)
T ss_pred ccchh
Confidence 98643
No 22
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.84 E-value=2.4e-20 Score=186.75 Aligned_cols=156 Identities=22% Similarity=0.341 Sum_probs=121.8
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
...+++||+++||++|+||++.|+++.|+|+||+|||+|++|++.+... .+++|+||++|.++.. +...+
T Consensus 58 ~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-------~g~~vlYvs~Ees~~q---i~~ra 127 (446)
T PRK11823 58 EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-------AGGKVLYVSGEESASQ---IKLRA 127 (446)
T ss_pred cCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEccccHHH---HHHHH
Confidence 4578999999999999999999999999999999999999999988652 4679999999975432 22112
Q ss_pred HHHH------------------------------------H--------------HHHHHHHHHHHhhcc-cEEEEEcc-
Q psy13674 229 SLVT------------------------------------L--------------VGSRLPMSFHITRED-LIVFFPLN- 256 (315)
Q Consensus 229 er~~------------------------------------l--------------L~~~~~~L~~LA~e~-iaVV~~~~- 256 (315)
++++ + +++++..|.++|+++ ++|+.+..
T Consensus 128 ~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hv 207 (446)
T PRK11823 128 ERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHV 207 (446)
T ss_pred HHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 2211 0 345667899999999 88886422
Q ss_pred CCCCcccccccccccccEEEEEEec-CCCeEEEEEEECCCCCCee-EEEEEeCCCcccCC
Q psy13674 257 ADPKKPVGGNIMAHASTTRISLRKG-RGETRIAKIYDSPDMPEAE-AMFAITNGGIADAK 314 (315)
Q Consensus 257 ~~~~~PalG~~wah~~~tRl~L~k~-~g~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~~ 314 (315)
......+++..|+|+++++++|++. .+..|.++++|++..|..+ ..|+|+++||..+.
T Consensus 208 tk~~~~ag~~~lehlvD~Vi~le~~~~~~~R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~ 267 (446)
T PRK11823 208 TKEGAIAGPRVLEHMVDTVLYFEGDRHSRYRILRAVKNRFGATNEIGVFEMTEQGLREVS 267 (446)
T ss_pred cCCCCcCCcchhhhhCeEEEEEEcCCCCceEEEEEccCCCCCCCceEEEEEcCCCceECC
Confidence 1112345667899999999999853 4468999999999998776 88999999998553
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.84 E-value=4e-20 Score=181.43 Aligned_cols=156 Identities=23% Similarity=0.336 Sum_probs=122.6
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
...+++||+++||++|+||+++|+++.|+|+||+|||+|++|+|.+... .+++++||+.|.+. + .+...+
T Consensus 60 ~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~-------~g~~VlYvs~EEs~--~-qi~~Ra 129 (372)
T cd01121 60 EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-------RGGKVLYVSGEESP--E-QIKLRA 129 (372)
T ss_pred ccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-------cCCeEEEEECCcCH--H-HHHHHH
Confidence 4568999999999999999999999999999999999999999987642 35799999998643 2 222222
Q ss_pred HHHHH--------------------------------------------------HHHHHHHHHHHhhcc-cEEEEEcc-
Q psy13674 229 SLVTL--------------------------------------------------VGSRLPMSFHITRED-LIVFFPLN- 256 (315)
Q Consensus 229 er~~l--------------------------------------------------L~~~~~~L~~LA~e~-iaVV~~~~- 256 (315)
+++++ +++++..|.++|+++ ++|+..-.
T Consensus 130 ~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 130 DRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 22110 345677899999999 88886422
Q ss_pred CCCCcccccccccccccEEEEEEecCC-CeEEEEEEECCCCCCee-EEEEEeCCCcccCC
Q psy13674 257 ADPKKPVGGNIMAHASTTRISLRKGRG-ETRIAKIYDSPDMPEAE-AMFAITNGGIADAK 314 (315)
Q Consensus 257 ~~~~~PalG~~wah~~~tRl~L~k~~g-~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~~ 314 (315)
......+++..+.|++++.++|++.++ ..|.++++|++..+..+ ..|+|+++||..+.
T Consensus 210 tk~g~~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~ 269 (372)
T cd01121 210 TKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVS 269 (372)
T ss_pred cCCCcccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCCCCCCEEEEEECCCCeEEcc
Confidence 111235667899999999999987664 68999999999998777 99999999998643
No 24
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.84 E-value=3.9e-20 Score=172.73 Aligned_cols=155 Identities=20% Similarity=0.305 Sum_probs=113.0
Q ss_pred cceecCChhHHHhh--------------cCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 151 FKITTGSTELDKIL--------------GGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 151 ~~isTG~~~LD~lL--------------~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..++||+++||++| +||++.|++|+|+|+||+|||+||+|++.+.+. .+.+|+||++|.
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-------~Ge~vlyis~Ee 74 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQAS-------RGNPVLFVTVES 74 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh-------CCCcEEEEEecC
Confidence 46899999999999 599999999999999999999999999988652 478999999995
Q ss_pred CC--ChhhHHHHHHHHHHH----------------------------------------------------------HHH
Q psy13674 217 TL--YPLLNIIAIASLVTL----------------------------------------------------------VGS 236 (315)
Q Consensus 217 ~F--~~~~Rl~~iaer~~l----------------------------------------------------------L~~ 236 (315)
+. ..+ |+...++++++ ..+
T Consensus 75 ~~~~~~~-~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~~~~r~ 153 (259)
T TIGR03878 75 PANFVYT-SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKEMMARE 153 (259)
T ss_pred CchHHHH-HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccchHHHHH
Confidence 32 222 33222222110 234
Q ss_pred HHHHHHHHhhcc-cEEEEEccC-C-----CCcccccccccccccEEEEEEec--------------CC-CeEEEEEEECC
Q psy13674 237 RLPMSFHITRED-LIVFFPLNA-D-----PKKPVGGNIMAHASTTRISLRKG--------------RG-ETRIAKIYDSP 294 (315)
Q Consensus 237 ~~~~L~~LA~e~-iaVV~~~~~-~-----~~~PalG~~wah~~~tRl~L~k~--------------~g-~~R~~~I~KSp 294 (315)
++..|..++++. ++|+.+... + ...|+++..++|+++..++|++. .| -.|.+.|+|.+
T Consensus 154 ~~~~L~~~lk~~~~t~ll~~e~~~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmR 233 (259)
T TIGR03878 154 IVRQLFNFMKKWYQTALFVSQKRSGHEELSAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCR 233 (259)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccCcccccccccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEEEEEEEEcc
Confidence 455566777777 666643221 0 11466777899999999999841 13 36889999998
Q ss_pred CCCCe--eEEEEEeCCCcccC
Q psy13674 295 DMPEA--EAMFAITNGGIADA 313 (315)
Q Consensus 295 ~~p~~--~~~F~It~~GI~~~ 313 (315)
..++. ..+|.|++.||..+
T Consensus 234 g~~h~~~~~~~~It~~Gi~~i 254 (259)
T TIGR03878 234 MCGHDTKTHVLEIDETGLVKI 254 (259)
T ss_pred CCCCCCceeEEEEcCCceEEe
Confidence 87754 48999999997765
No 25
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.82 E-value=2.3e-19 Score=180.09 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=120.7
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
+..+++||+++||++|+||+++|+++.|+|+||+|||+|++|++.+... .+++|+||+.|.++. .+..-+
T Consensus 72 ~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~-------~g~kvlYvs~EEs~~---qi~~ra 141 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK-------NQMKVLYVSGEESLQ---QIKMRA 141 (454)
T ss_pred ccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCcEEEEECcCCHH---HHHHHH
Confidence 4578999999999999999999999999999999999999999987642 356899999996532 222222
Q ss_pred HHHHH--------------------------------------------------HHHHHHHHHHHhhcc-cEEEEEcc-
Q psy13674 229 SLVTL--------------------------------------------------VGSRLPMSFHITRED-LIVFFPLN- 256 (315)
Q Consensus 229 er~~l--------------------------------------------------L~~~~~~L~~LA~e~-iaVV~~~~- 256 (315)
+++++ +.+++..|.++|+++ ++|+.+..
T Consensus 142 ~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hv 221 (454)
T TIGR00416 142 IRLGLPEPNLYVLSETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHV 221 (454)
T ss_pred HHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 22210 345667899999999 88886522
Q ss_pred CCCCcccccccccccccEEEEEEecC-CCeEEEEEEECCCCCCee-EEEEEeCCCcccC
Q psy13674 257 ADPKKPVGGNIMAHASTTRISLRKGR-GETRIAKIYDSPDMPEAE-AMFAITNGGIADA 313 (315)
Q Consensus 257 ~~~~~PalG~~wah~~~tRl~L~k~~-g~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~ 313 (315)
.....-++...|.|++++.++|++.+ +..|.++++|++..+..+ ..|+|++.||..+
T Consensus 222 tkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~~~e~~~f~it~~Gl~~v 280 (454)
T TIGR00416 222 TKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGATNEIGIFEMTEQGLREV 280 (454)
T ss_pred ccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCCCCcEEEEEEecCCceec
Confidence 11112355678999999999998755 457999999999888777 9999999999754
No 26
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.80 E-value=2.7e-19 Score=172.39 Aligned_cols=156 Identities=28% Similarity=0.419 Sum_probs=116.7
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA 226 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ 226 (315)
.....++||+..||.+|+ ||+|.|.|+||+|++++|||+|+++++.+++. .++.|+|||.|++|.+. ++..
T Consensus 29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-------~g~~~a~ID~e~~ld~~-~a~~ 100 (322)
T PF00154_consen 29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-------QGGICAFIDAEHALDPE-YAES 100 (322)
T ss_dssp CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------TT-EEEEEESSS---HH-HHHH
T ss_pred cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-------ccceeEEecCcccchhh-HHHh
Confidence 467899999999999999 99999999999999999999999999998873 57899999999999997 6554
Q ss_pred H---------------------HHHH------H------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 227 I---------------------ASLV------T------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 227 i---------------------aer~------~------------------------------lL~~~~~~L~~LA~e~- 248 (315)
+ ++.+ + +|.++++.|..+..+.
T Consensus 101 lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~~ 180 (322)
T PF00154_consen 101 LGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKSN 180 (322)
T ss_dssp TT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhhc
Confidence 3 1111 0 0677888888888888
Q ss_pred cEEEE---------EccCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEEe-CC
Q psy13674 249 LIVFF---------PLNADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAIT-NG 308 (315)
Q Consensus 249 iaVV~---------~~~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~It-~~ 308 (315)
+++|. .+.+++....||+.|.|.+.+|+.++|.+ |..-.++|+|+...|+.. +.|.|. +.
T Consensus 181 ~~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~vkv~KnKva~P~k~a~~~i~y~~ 260 (322)
T PF00154_consen 181 TTLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKVKVVKNKVAPPFKKAEFDIYYGR 260 (322)
T ss_dssp -EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEEEEEEESSS-TTEEEEEEEETTT
T ss_pred eEEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEEEEEEcccCCCcceeEEEEecCC
Confidence 76663 13355667789999999999999998742 345668999999999876 999988 66
Q ss_pred Ccc
Q psy13674 309 GIA 311 (315)
Q Consensus 309 GI~ 311 (315)
||.
T Consensus 261 Gid 263 (322)
T PF00154_consen 261 GID 263 (322)
T ss_dssp EE-
T ss_pred eEC
Confidence 764
No 27
>PRK04328 hypothetical protein; Provisional
Probab=99.80 E-value=1.2e-18 Score=161.83 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=111.6
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHH
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASL 230 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer 230 (315)
.+++||++.||++|+||+|.|+++.|+|+||+|||.||+|++.+.+. .+.+++||++|. +++ .+.+.+++
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-------~ge~~lyis~ee--~~~-~i~~~~~~ 72 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-------MGEPGVYVALEE--HPV-QVRRNMRQ 72 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCcEEEEEeeC--CHH-HHHHHHHH
Confidence 46899999999999999999999999999999999999999887642 467889999875 333 33322222
Q ss_pred HHH------------------------------------------------------------------------HHHHH
Q psy13674 231 VTL------------------------------------------------------------------------VGSRL 238 (315)
Q Consensus 231 ~~l------------------------------------------------------------------------L~~~~ 238 (315)
+|+ ..+++
T Consensus 73 ~g~d~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~ 152 (249)
T PRK04328 73 FGWDVRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIV 152 (249)
T ss_pred cCCCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHH
Confidence 110 12345
Q ss_pred HHHHHHhhcc-cEEEEEccCC-CCcccccccccccccEEEEEEecC--C-CeEEEEEEECCCCCCee--EEEEEeCCCcc
Q psy13674 239 PMSFHITRED-LIVFFPLNAD-PKKPVGGNIMAHASTTRISLRKGR--G-ETRIAKIYDSPDMPEAE--AMFAITNGGIA 311 (315)
Q Consensus 239 ~~L~~LA~e~-iaVV~~~~~~-~~~PalG~~wah~~~tRl~L~k~~--g-~~R~~~I~KSp~~p~~~--~~F~It~~GI~ 311 (315)
..|.++++++ ++|+.+.... ...+..|....|+++..+.|++.. | ..|.+.|.|.+..++.. .+|.|+++||.
T Consensus 153 ~~l~~~lk~~g~t~llt~e~~~~~~~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~~~It~~Gi~ 232 (249)
T PRK04328 153 MQLKRVLSGLGCTAIFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIV 232 (249)
T ss_pred HHHHHHHHhCCCEEEEEECccccccccCCCCcEEEEEEEEEEEEEecCCcEEEEEEEEEccCCCCCCceEEEEEcCCCEE
Confidence 5566777777 7777653321 223455666789999999998632 2 36889999999888654 89999999985
No 28
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.79 E-value=9.1e-19 Score=158.65 Aligned_cols=149 Identities=24% Similarity=0.300 Sum_probs=104.6
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCC-CCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT-GGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~-~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
++||++.||++|+||+|.|+++.|+|+||+|||.||+|++.+.+. . +.+|+||++|. +++ .+.+-++.+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~-------~~ge~vlyvs~ee--~~~-~l~~~~~s~ 70 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK-------NFGEKVLYVSFEE--PPE-ELIENMKSF 70 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------HHT--EEEEESSS---HH-HHHHHHHTT
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh-------hcCCcEEEEEecC--CHH-HHHHHHHHc
Confidence 689999999999999999999999999999999999999987653 4 78999999985 333 444433332
Q ss_pred HH---------------------------------------------------------------HHHHHHHHHHHhhcc
Q psy13674 232 TL---------------------------------------------------------------VGSRLPMSFHITRED 248 (315)
Q Consensus 232 ~l---------------------------------------------------------------L~~~~~~L~~LA~e~ 248 (315)
|+ +..++..|.+..++.
T Consensus 71 g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~ 150 (226)
T PF06745_consen 71 GWDLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR 150 (226)
T ss_dssp TS-HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC
Confidence 21 344455555555555
Q ss_pred -cEEEEEcc-CCCCcccccccccc-cccEEEEEEecC---CCeEEEEEEECCCCCCee--EEEEEeCCCcc
Q psy13674 249 -LIVFFPLN-ADPKKPVGGNIMAH-ASTTRISLRKGR---GETRIAKIYDSPDMPEAE--AMFAITNGGIA 311 (315)
Q Consensus 249 -iaVV~~~~-~~~~~PalG~~wah-~~~tRl~L~k~~---g~~R~~~I~KSp~~p~~~--~~F~It~~GI~ 311 (315)
++++.+.. .....+.....+.| +++..+.|+... .-.|.++|.|.+..++.. .+|+|++.||+
T Consensus 151 ~~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~ 221 (226)
T PF06745_consen 151 GVTTLLTSEMPSGSEDDGTFGIEHYLADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTGIHPFEITPGGIE 221 (226)
T ss_dssp TEEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEEEEEETTEEEEEEEEEEETTS----BEEEEEEETTEEE
T ss_pred CCEEEEEEccccCcccccccchhhhcccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCcEEEEEEECCeEE
Confidence 44443332 22335666777888 999999998632 247999999999988644 99999999986
No 29
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.79 E-value=2.9e-18 Score=157.61 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=110.8
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH-----
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA----- 226 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~----- 226 (315)
+++||++.||++|+||++.|+++.|+|+||+|||.||+|++.+.+. .+.+|+||++|.+ ++ .+.+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-------~ge~~lyvs~ee~--~~-~i~~~~~~~ 71 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-------MGEPGIYVALEEH--PV-QVRRNMAQF 71 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEeeCC--HH-HHHHHHHHh
Confidence 5899999999999999999999999999999999999999887642 4778999988852 21 1111
Q ss_pred ------------------------------------------HHHH-------HH-----------H-------HHHHHH
Q psy13674 227 ------------------------------------------IASL-------VT-----------L-------VGSRLP 239 (315)
Q Consensus 227 ------------------------------------------iaer-------~~-----------l-------L~~~~~ 239 (315)
+.++ ++ + ..+++.
T Consensus 72 g~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~ 151 (237)
T TIGR03877 72 GWDVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVM 151 (237)
T ss_pred CCCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHH
Confidence 1110 00 0 235666
Q ss_pred HHHHHhhcc-cEEEEEccCC-CCcccccccccccccEEEEEEecC--C-CeEEEEEEECCCCCCee--EEEEEeCCCcc
Q psy13674 240 MSFHITRED-LIVFFPLNAD-PKKPVGGNIMAHASTTRISLRKGR--G-ETRIAKIYDSPDMPEAE--AMFAITNGGIA 311 (315)
Q Consensus 240 ~L~~LA~e~-iaVV~~~~~~-~~~PalG~~wah~~~tRl~L~k~~--g-~~R~~~I~KSp~~p~~~--~~F~It~~GI~ 311 (315)
.|.+++++. ++||.+...+ ...+..+..++|+++..+.|+... | -.|.+.|.|.+..++.. .+|.|+++||+
T Consensus 152 ~l~~~lk~~~~t~llt~~~~~~~~~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~i~K~Rg~~~~~~~~~~~It~~Gi~ 230 (237)
T TIGR03877 152 QLKRVLSGLGCTSIFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGII 230 (237)
T ss_pred HHHHHHHhCCCEEEEEECcccccccccccceEEEEeEEEEEEEEeeCCceEEEEEEEECCCCCCCCceEEEEEcCCCEE
Confidence 788888888 7777653321 223445566799999999998642 2 37889999999888654 89999999986
No 30
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.8e-18 Score=165.74 Aligned_cols=155 Identities=23% Similarity=0.351 Sum_probs=128.0
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI 227 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i 227 (315)
.+..+|+||+.+||++||||+-+|+++.|.|+||.|||+|.||+|...+. .++|+||+.|.+ +. .+.-.
T Consensus 70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~--------~~~vLYVsGEES--~~-QiklR 138 (456)
T COG1066 70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK--------RGKVLYVSGEES--LQ-QIKLR 138 (456)
T ss_pred eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh--------cCcEEEEeCCcC--HH-HHHHH
Confidence 46789999999999999999999999999999999999999999998752 339999999974 33 33333
Q ss_pred HHHHHH--------------------------------------------------HHHHHHHHHHHhhcc-cEEEEE--
Q psy13674 228 ASLVTL--------------------------------------------------VGSRLPMSFHITRED-LIVFFP-- 254 (315)
Q Consensus 228 aer~~l--------------------------------------------------L~~~~~~L~~LA~e~-iaVV~~-- 254 (315)
|+|+++ +++....|.++|++. ++++..
T Consensus 139 A~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 139 ADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred HHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 444321 788899999999999 887753
Q ss_pred ccCCCCcccccccccccccEEEEEEecC-CCeEEEEEEECCCCCCee-EEEEEeCCCcccCC
Q psy13674 255 LNADPKKPVGGNIMAHASTTRISLRKGR-GETRIAKIYDSPDMPEAE-AMFAITNGGIADAK 314 (315)
Q Consensus 255 ~~~~~~~PalG~~wah~~~tRl~L~k~~-g~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~~ 314 (315)
.+.+ -.-||..++.|+++|-|+++.++ ...|+++-+|++..+..+ ..|+++++|++.+.
T Consensus 219 VTKe-G~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~ 279 (456)
T COG1066 219 VTKE-GAIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVS 279 (456)
T ss_pred Eccc-ccccCchheeeeeeEEEEEeccCCCceeeeehhcccCCcccceeEEEEecCCeeEec
Confidence 2221 24588899999999999999764 468999999999999998 99999999998775
No 31
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.72 E-value=1.6e-16 Score=143.98 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=106.0
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC------------
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY------------ 219 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~------------ 219 (315)
+++||++.||++|+||++.|+++.|+|+||+|||+|+++++.+.+. .+.+++||++|.+..
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-------~g~~~~~is~e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-------DGDPVIYVTTEESRESIIRQAAQFGMD 73 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEEccCCHHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999999887642 356788888764321
Q ss_pred ------------------------------hh---hHHHHHHHHHHH--------------------HHHHHHHHHHHhh
Q psy13674 220 ------------------------------PL---LNIIAIASLVTL--------------------VGSRLPMSFHITR 246 (315)
Q Consensus 220 ------------------------------~~---~Rl~~iaer~~l--------------------L~~~~~~L~~LA~ 246 (315)
.+ .++.++.+..+. .++++..|+++++
T Consensus 74 ~~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~ 153 (229)
T TIGR03881 74 FEKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN 153 (229)
T ss_pred HHHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH
Confidence 00 001111111110 2345566777788
Q ss_pred cc-cEEEEEccCC-CCcccccccccccccEEEEEEecC--C-CeEEEEEEECCCCCCee--EEEEEeC-CCcc
Q psy13674 247 ED-LIVFFPLNAD-PKKPVGGNIMAHASTTRISLRKGR--G-ETRIAKIYDSPDMPEAE--AMFAITN-GGIA 311 (315)
Q Consensus 247 e~-iaVV~~~~~~-~~~PalG~~wah~~~tRl~L~k~~--g-~~R~~~I~KSp~~p~~~--~~F~It~-~GI~ 311 (315)
++ ++||.+.... ...+..+...+|+++..+.|++.. | -.|.++|.|.+..++.. .+|+|++ .||.
T Consensus 154 ~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 154 RWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFRKVVVDGELRRYLIVEKMRQTNHDKRAWEIDIVPGKGLV 226 (229)
T ss_pred hCCCEEEEEecccccCCCCcccceEEEEeEEEEEEEeccCCcEEEEEEEEeccCCCCCCceeEEEEcCCCceE
Confidence 77 7777543311 111233344689999999998632 2 37889999998887554 8999995 7985
No 32
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.72 E-value=1.2e-16 Score=145.90 Aligned_cols=62 Identities=39% Similarity=0.469 Sum_probs=56.0
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
..+++||++.||++|+||+|.|+++.|+|+||+|||+||++++...+. .+.+|+|+++|.+.
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-------~g~~~~y~~~e~~~ 65 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-------QGKKVYVITTENTS 65 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-------CCCEEEEEEcCCCH
Confidence 457999999999999999999999999999999999999999887642 57899999999753
No 33
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.72 E-value=1.1e-16 Score=161.74 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=109.8
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
...+++||+++||++|+||++.|++|.|.|+||+|||+|++|++.+.+. .+.+|+||..|.+ ++ .+..-+
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-------~ge~~~y~s~eEs--~~-~i~~~~ 310 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-------NKERAILFAYEES--RA-QLLRNA 310 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEeeCC--HH-HHHHHH
Confidence 4568999999999999999999999999999999999999999998752 4679999999973 33 333333
Q ss_pred HHHHH----------------------------------------------------------HHHHHHHHHHHhhcc-c
Q psy13674 229 SLVTL----------------------------------------------------------VGSRLPMSFHITRED-L 249 (315)
Q Consensus 229 er~~l----------------------------------------------------------L~~~~~~L~~LA~e~-i 249 (315)
+++|+ ..+++..|.+.+++. +
T Consensus 311 ~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~i 390 (484)
T TIGR02655 311 YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEI 390 (484)
T ss_pred HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCC
Confidence 33221 122334455556666 6
Q ss_pred EEEEEccCCC---CcccccccccccccEEEEEEecC--CC-eEEEEEEECCCCCCee--EEEEEeCCCcc
Q psy13674 250 IVFFPLNADP---KKPVGGNIMAHASTTRISLRKGR--GE-TRIAKIYDSPDMPEAE--AMFAITNGGIA 311 (315)
Q Consensus 250 aVV~~~~~~~---~~PalG~~wah~~~tRl~L~k~~--g~-~R~~~I~KSp~~p~~~--~~F~It~~GI~ 311 (315)
+++.+..... ..+......+|++++.++|+..+ |+ .|.+.|+|++..++.. .+|+||++||+
T Consensus 391 t~~~t~~~~~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~~~~~It~~Gi~ 460 (484)
T TIGR02655 391 TGFFTNTSDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPE 460 (484)
T ss_pred eEEEeecccccccCCccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEccCCCCCCceEEEEEcCCcEE
Confidence 6654422111 11122234588999999998643 43 6778999999887554 99999999986
No 34
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.71 E-value=1.6e-16 Score=160.90 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=113.7
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI 227 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i 227 (315)
+...+++||++.||++|+||++.|+++.|+|+||+|||+||++++.+.+. .+.+|+||++|.+ ++ .+.+.
T Consensus 250 ~~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-------~g~~~~yis~e~~--~~-~i~~~ 319 (509)
T PRK09302 250 SSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-------RGERCLLFAFEES--RA-QLIRN 319 (509)
T ss_pred cccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-------CCCcEEEEEecCC--HH-HHHHH
Confidence 35678999999999999999999999999999999999999999988753 5789999999863 33 33333
Q ss_pred HHHHHH----------------------------------------------------------HHHHHHHHHHHhhcc-
Q psy13674 228 ASLVTL----------------------------------------------------------VGSRLPMSFHITRED- 248 (315)
Q Consensus 228 aer~~l----------------------------------------------------------L~~~~~~L~~LA~e~- 248 (315)
++.+|+ +.+++..|.+.++++
T Consensus 320 ~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~ 399 (509)
T PRK09302 320 ARSWGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEE 399 (509)
T ss_pred HHHcCCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 322210 344556677778888
Q ss_pred cEEEEEccCCC---CcccccccccccccEEEEEEecC--C-CeEEEEEEECCCCCCe--eEEEEEeCCCcc
Q psy13674 249 LIVFFPLNADP---KKPVGGNIMAHASTTRISLRKGR--G-ETRIAKIYDSPDMPEA--EAMFAITNGGIA 311 (315)
Q Consensus 249 iaVV~~~~~~~---~~PalG~~wah~~~tRl~L~k~~--g-~~R~~~I~KSp~~p~~--~~~F~It~~GI~ 311 (315)
++||.+..... ..+..-..++|+++..+.|++.. | -.|++.|.|.+..+.. ..+|.|++.||.
T Consensus 400 ~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~It~~Gi~ 470 (509)
T PRK09302 400 ITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIH 470 (509)
T ss_pred CeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEcCCCCCCCceEEEEEeCCcEE
Confidence 77775432111 11112223789999999998742 3 3688999999887643 499999999975
No 35
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.68 E-value=1.4e-15 Score=137.75 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=97.2
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH--
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL-- 233 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l-- 233 (315)
|++.||++|+||+++|+++.|+|+||+|||+||+++|.+.+. .+.+|+||++|. +++ ++.+.++++++
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~-------~g~~~~y~s~e~--~~~-~l~~~~~~~~~~~ 70 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK-------NGEKAMYISLEE--REE-RILGYAKSKGWDL 70 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECCC--CHH-HHHHHHHHcCCCh
Confidence 789999999999999999999999999999999999988652 478999999996 444 44444433221
Q ss_pred ---------------------HHHHHHHHHHHhhcc--------------------------------------cEEEEE
Q psy13674 234 ---------------------VGSRLPMSFHITRED--------------------------------------LIVFFP 254 (315)
Q Consensus 234 ---------------------L~~~~~~L~~LA~e~--------------------------------------iaVV~~ 254 (315)
+..+...+..+.+++ ++|+.+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~ 150 (224)
T TIGR03880 71 EDYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILT 150 (224)
T ss_pred HHHHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 112222223333222 322221
Q ss_pred ccCCCCccccc--ccccccccEEEEEEecC-C----CeEEEEEEECCCCCCe--eEEEEEeCCCcc
Q psy13674 255 LNADPKKPVGG--NIMAHASTTRISLRKGR-G----ETRIAKIYDSPDMPEA--EAMFAITNGGIA 311 (315)
Q Consensus 255 ~~~~~~~PalG--~~wah~~~tRl~L~k~~-g----~~R~~~I~KSp~~p~~--~~~F~It~~GI~ 311 (315)
...+...|..+ ....|+++..+.|+... + -.|.++|+|.+..+.. ...|+|+++||.
T Consensus 151 s~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~~~~~~i~~~Gi~ 216 (224)
T TIGR03880 151 SEADKTNVFASKYGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSREIKPYEITDSGIT 216 (224)
T ss_pred EcccCCCCCccCCCceEEEEeEEEEEeeeecccCcceEEEEEEEEccCCCCCCceEEEEEcCCcEE
Confidence 11111111111 23688889899887432 2 2457899999887644 489999999986
No 36
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.66 E-value=1.5e-15 Score=153.52 Aligned_cols=151 Identities=23% Similarity=0.237 Sum_probs=99.4
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
+++||+++||++|+||++.|+++.|.|+||+|||.||+|++.+.+. ..+.+++||+.|. +++ .+.+-++++
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~------~~ge~~lyvs~eE--~~~-~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------HFDEPGVFVTFEE--SPQ-DIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------hCCCCEEEEEEec--CHH-HHHHHHHHc
Confidence 5899999999999999999999999999999999999999887432 1357888888774 222 222222221
Q ss_pred HH-------------------------------------------------------------------H-HHHHHHHHH
Q psy13674 232 TL-------------------------------------------------------------------V-GSRLPMSFH 243 (315)
Q Consensus 232 ~l-------------------------------------------------------------------L-~~~~~~L~~ 243 (315)
|+ . ..+...++.
T Consensus 73 G~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~ 152 (484)
T TIGR02655 73 GWDLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVAR 152 (484)
T ss_pred CCCHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHH
Confidence 10 0 122233333
Q ss_pred HhhcccEEEEEcc-CCCCcccccccc-cccccEEEEEEec-CCC--eEEEEEEECCCCCCe--eEEEEEeCCCcc
Q psy13674 244 ITREDLIVFFPLN-ADPKKPVGGNIM-AHASTTRISLRKG-RGE--TRIAKIYDSPDMPEA--EAMFAITNGGIA 311 (315)
Q Consensus 244 LA~e~iaVV~~~~-~~~~~PalG~~w-ah~~~tRl~L~k~-~g~--~R~~~I~KSp~~p~~--~~~F~It~~GI~ 311 (315)
+.+..++||.+.. .+...+.....+ .|+++..+.|+.. .++ .|.++|+|.+..+.. ..+|.|+++||+
T Consensus 153 L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~~~~~~~~~R~l~I~K~Rgs~~~~~~~~~~It~~Gi~ 227 (484)
T TIGR02655 153 LKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGIN 227 (484)
T ss_pred HHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEEEecCCEEEEEEEEEECCCCCcCCceEEEEEcCCcEE
Confidence 4332244443221 111111112224 8899999999753 233 588999999887754 489999999986
No 37
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.63 E-value=5.2e-15 Score=149.96 Aligned_cols=154 Identities=22% Similarity=0.228 Sum_probs=102.8
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
...+++||++.||++|+||+|.|+++.|+|+||+|||.||+|++.+.+. ..+.+|+||++|.+ ++ .+.+-+
T Consensus 9 ~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~------~~ge~~lyis~ee~--~~-~i~~~~ 79 (509)
T PRK09302 9 GIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK------RFDEPGVFVTFEES--PE-DIIRNV 79 (509)
T ss_pred CCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------hcCCCEEEEEccCC--HH-HHHHHH
Confidence 4568999999999999999999999999999999999999999887653 12678999998863 32 222222
Q ss_pred HHHHH-------------------------------------------------------------------HHHHHHHH
Q psy13674 229 SLVTL-------------------------------------------------------------------VGSRLPMS 241 (315)
Q Consensus 229 er~~l-------------------------------------------------------------------L~~~~~~L 241 (315)
..+|+ +...+..|
T Consensus 80 ~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L 159 (509)
T PRK09302 80 ASFGWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRL 159 (509)
T ss_pred HHcCCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHH
Confidence 22110 12223333
Q ss_pred HHHhhcc-cEEEEEccCCCCccccc-c-cccccccEEEEEEecC-C--CeEEEEEEECCCCCCee--EEEEEeCCCcc
Q psy13674 242 FHITRED-LIVFFPLNADPKKPVGG-N-IMAHASTTRISLRKGR-G--ETRIAKIYDSPDMPEAE--AMFAITNGGIA 311 (315)
Q Consensus 242 ~~LA~e~-iaVV~~~~~~~~~PalG-~-~wah~~~tRl~L~k~~-g--~~R~~~I~KSp~~p~~~--~~F~It~~GI~ 311 (315)
.+.+++. ++++.+.......+... . .-.++++..+.|+... + ..|.++|.|.+..+... .+|.|++.||+
T Consensus 160 ~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~ 237 (509)
T PRK09302 160 FAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFTITEDGIS 237 (509)
T ss_pred HHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEeEEccCCeEEEEEEEEECCCCCcCCccEEEEECCCcEE
Confidence 3334444 44443221100001111 1 2367888888887532 2 36999999999888554 99999999986
No 38
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.54 E-value=1.7e-13 Score=126.10 Aligned_cols=152 Identities=26% Similarity=0.244 Sum_probs=103.3
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH-
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA- 228 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia- 228 (315)
...|.++++.||++|+||++.|+++.|.|++|+|||+||++++..... .+.+++||++|.+.. + .+.++.
T Consensus 3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-------~g~~~~yi~~e~~~~-~-~~~~~~~ 73 (230)
T PRK08533 3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-------NGYSVSYVSTQLTTT-E-FIKQMMS 73 (230)
T ss_pred eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEEeCCCCHH-H-HHHHHHH
Confidence 467899999999999999999999999999999999999999887542 357899999885321 1 111111
Q ss_pred -------------------------------------HHHH--------------H---------HHHHHHHHHHHhhcc
Q psy13674 229 -------------------------------------SLVT--------------L---------VGSRLPMSFHITRED 248 (315)
Q Consensus 229 -------------------------------------er~~--------------l---------L~~~~~~L~~LA~e~ 248 (315)
+... . ...+...|+++++..
T Consensus 74 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g 153 (230)
T PRK08533 74 LGYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN 153 (230)
T ss_pred hCCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC
Confidence 1000 0 234555666665555
Q ss_pred -cEEEEEccCCCCcccccccccccccEEEEEEecC-CC--eEEEEEEECCCCCCe---eEEEEEeCC-Ccc
Q psy13674 249 -LIVFFPLNADPKKPVGGNIMAHASTTRISLRKGR-GE--TRIAKIYDSPDMPEA---EAMFAITNG-GIA 311 (315)
Q Consensus 249 -iaVV~~~~~~~~~PalG~~wah~~~tRl~L~k~~-g~--~R~~~I~KSp~~p~~---~~~F~It~~-GI~ 311 (315)
++++..-... ..........|+++..+.|+... ++ .|.+.|+|.+..+.. ..+|+|..+ ||+
T Consensus 154 ~tvi~t~~~~~-~~~~~~~~~~~~~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~~~f~i~~~~g~~ 223 (230)
T PRK08533 154 KVIILTANPKE-LDESVLTILRTAATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKSIPFRVEPKIGLA 223 (230)
T ss_pred CEEEEEecccc-cccccceeEEEeeeEEEEEEEeecCCEEEEEEEEEEecCCccccCCEEEEEEcCCccEE
Confidence 3333321111 01111124689999999998642 22 688999999997754 599999966 875
No 39
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-13 Score=126.97 Aligned_cols=153 Identities=26% Similarity=0.349 Sum_probs=106.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIAS 229 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iae 229 (315)
..+++||++.||++|+||+|.|.++.|+|+||+|||.|++|++.+.+- .+.+|+||+++. +++ -+.+.+.
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-------~ge~vlyvs~~e--~~~-~l~~~~~ 71 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-------EGEPVLYVSTEE--SPE-ELLENAR 71 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-------cCCcEEEEEecC--CHH-HHHHHHH
Confidence 357999999999999999999999999999999999999999998752 478999999995 455 5555555
Q ss_pred HHHH---------------------------------HHHHHHHHHHHhhcc---cEEEEEcc------CC---------
Q psy13674 230 LVTL---------------------------------VGSRLPMSFHITRED---LIVFFPLN------AD--------- 258 (315)
Q Consensus 230 r~~l---------------------------------L~~~~~~L~~LA~e~---iaVV~~~~------~~--------- 258 (315)
+||. +..+...|+.+++++ +.|+++.. .+
T Consensus 72 ~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~ 151 (260)
T COG0467 72 SFGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILL 151 (260)
T ss_pred HcCCCHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCchHHHHHHHH
Confidence 4432 344666777777765 44443111 00
Q ss_pred ---------C-------Ccccc--c--ccccccccEEEEEEecC---CCeE-EEEEEECCCCCCee--EEEEEeC-CCcc
Q psy13674 259 ---------P-------KKPVG--G--NIMAHASTTRISLRKGR---GETR-IAKIYDSPDMPEAE--AMFAITN-GGIA 311 (315)
Q Consensus 259 ---------~-------~~Pal--G--~~wah~~~tRl~L~k~~---g~~R-~~~I~KSp~~p~~~--~~F~It~-~GI~ 311 (315)
. ..+.. . ..-.+.++.-+.|.... +..| .+.|.|.+..++.. .+|.|++ +||.
T Consensus 152 ~l~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~~~~~~~~~~i~~g~gi~ 231 (260)
T COG0467 152 LLKRFLKKLGVTSLLTTEAPVEERGESGVEEYIVDGVIRLDLKEIEGGGDRRYLRILKMRGTPHSLKVIPFEITDGEGIV 231 (260)
T ss_pred HHHHHHHhCCCEEEEEecccccCCCccceEEEEEEEEEEEeeecccCceEEEEEEEEeccccccCCceeceEEecCCcEE
Confidence 0 01111 1 12233666666665421 2345 89999999877653 9999999 6876
Q ss_pred c
Q psy13674 312 D 312 (315)
Q Consensus 312 ~ 312 (315)
-
T Consensus 232 i 232 (260)
T COG0467 232 V 232 (260)
T ss_pred E
Confidence 3
No 40
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.39 E-value=5.6e-12 Score=116.91 Aligned_cols=143 Identities=11% Similarity=0.101 Sum_probs=100.1
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC-ChhhHH-----
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL-YPLLNI----- 224 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F-~~~~Rl----- 224 (315)
..++||++.||+++ ||++.|.++.|.|+||+|||+|+++++.++.. ..+.+|+||+.|.+. ....|+
T Consensus 11 ~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~------~~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 11 EEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLIT------QHGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred cCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH------hcCceEEEEEcccCHHHHHHHHHHHHh
Confidence 47999999999999 89999999999999999999999999988753 236788888887431 000011
Q ss_pred ---------------------------------------------HHHHHHH----HH----------------------
Q psy13674 225 ---------------------------------------------IAIASLV----TL---------------------- 233 (315)
Q Consensus 225 ---------------------------------------------~~iaer~----~l---------------------- 233 (315)
.+.++++ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~ 163 (271)
T cd01122 84 GKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDER 163 (271)
T ss_pred CCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHH
Confidence 1111100 00
Q ss_pred --HHHHHHHHHHHhhcc-cEEEEEcc--C-C-C------Cccc-----ccccccccccEEEEEEecC------CCeEEEE
Q psy13674 234 --VGSRLPMSFHITRED-LIVFFPLN--A-D-P------KKPV-----GGNIMAHASTTRISLRKGR------GETRIAK 289 (315)
Q Consensus 234 --L~~~~~~L~~LA~e~-iaVV~~~~--~-~-~------~~Pa-----lG~~wah~~~tRl~L~k~~------g~~R~~~ 289 (315)
+.+++..|+++|+++ ++|+.+.. . . . ..|. +...+.+.++..+.|.+.+ ...|.++
T Consensus 164 ~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~~~~i~ 243 (271)
T cd01122 164 KALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLR 243 (271)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCCcEEEE
Confidence 456777899999999 88886422 1 1 0 1222 3346789999999998743 1468899
Q ss_pred EEECCCC-CCee
Q psy13674 290 IYDSPDM-PEAE 300 (315)
Q Consensus 290 I~KSp~~-p~~~ 300 (315)
|+|++.. +.+.
T Consensus 244 v~K~R~~~~~g~ 255 (271)
T cd01122 244 ILKNRFTGGTGV 255 (271)
T ss_pred EEeeccCCCccc
Confidence 9999985 6554
No 41
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.37 E-value=1.9e-11 Score=113.34 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=100.3
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh---hHHHHHH
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL---LNIIAIA 228 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~---~Rl~~ia 228 (315)
.|+||.+.||+++ ||+.+|.++-|.|.||+|||.|++++|.+++. ..+..|+|++.|- +.+ .|+....
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~------~~~~~vly~SlEm--~~~~l~~R~la~~ 71 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAAL------NGGYPVLYFSLEM--SEEELAARLLARL 71 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH------TTSSEEEEEESSS---HHHHHHHHHHHH
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHH------hcCCeEEEEcCCC--CHHHHHHHHHHHh
Confidence 3799999999999 69999999999999999999999999999874 1248899999984 222 0221111
Q ss_pred HH----------------------HH-H----------------------------------------------------
Q psy13674 229 SL----------------------VT-L---------------------------------------------------- 233 (315)
Q Consensus 229 er----------------------~~-l---------------------------------------------------- 233 (315)
.. .. +
T Consensus 72 s~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~ 151 (259)
T PF03796_consen 72 SGVPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNR 151 (259)
T ss_dssp HTSTHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCC
T ss_pred hcchhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCH
Confidence 00 00 0
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEc--c-----CCCCcccc-----cccccccccEEEEEEecC--------CCeEEEE
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVG-----GNIMAHASTTRISLRKGR--------GETRIAK 289 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~Pal-----G~~wah~~~tRl~L~k~~--------g~~R~~~ 289 (315)
+..++..|+.+|+++ |+||+.. . .....|.+ +...++.+++.++|.+.+ ...-.+.
T Consensus 152 ~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~ 231 (259)
T PF03796_consen 152 RQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELI 231 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEE
Confidence 778899999999999 9888632 2 12345653 345677889999998742 1245579
Q ss_pred EEECCCCCCeeEEEEEeC
Q psy13674 290 IYDSPDMPEAEAMFAITN 307 (315)
Q Consensus 290 I~KSp~~p~~~~~F~It~ 307 (315)
|.|+++.+.+.+.+....
T Consensus 232 v~KnR~G~~g~v~~~f~~ 249 (259)
T PF03796_consen 232 VAKNRNGPTGTVPLRFNP 249 (259)
T ss_dssp EEEESSS--EEEEEEEET
T ss_pred EEecCCCCCceEEEEEEC
Confidence 999999999887665543
No 42
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.36 E-value=4.7e-11 Score=118.45 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=104.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC--------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE-------------- 215 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE-------------- 215 (315)
...++||++.||++++ |+.+|.++.|+|+||+|||+||+++|.++++. .+.+|+|++.|
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fSlEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFSLEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHHH
Confidence 4679999999999995 99999999999999999999999999887531 24456666655
Q ss_pred --------------------------------------CCCChhhHHHHHHHHH-----HH-------------------
Q psy13674 216 --------------------------------------NTLYPLLNIIAIASLV-----TL------------------- 233 (315)
Q Consensus 216 --------------------------------------~~F~~~~Rl~~iaer~-----~l------------------- 233 (315)
+.++.+ .+...++++ ++
T Consensus 247 ~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~-~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~ 325 (421)
T TIGR03600 247 SGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVA-QIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDR 325 (421)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCH
Confidence 333333 222222211 00
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCccccc-----ccccccccEEEEEEecC------C--CeEEEE
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGG-----NIMAHASTTRISLRKGR------G--ETRIAK 289 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG-----~~wah~~~tRl~L~k~~------g--~~R~~~ 289 (315)
+.++++.|+.+|+++ ++||...+ ...++|.+. ..+..-+++.++|.|.. . +.-.+.
T Consensus 326 ~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~~~el~ 405 (421)
T TIGR03600 326 NEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELI 405 (421)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCCceEEE
Confidence 677899999999999 88886432 123457543 35677789999998742 1 234578
Q ss_pred EEECCCCCCeeEEE
Q psy13674 290 IYDSPDMPEAEAMF 303 (315)
Q Consensus 290 I~KSp~~p~~~~~F 303 (315)
|.|+++.|.+.+.+
T Consensus 406 v~K~R~G~~g~~~l 419 (421)
T TIGR03600 406 LAKNRHGPTGTVEL 419 (421)
T ss_pred EECCCCCCCceEEe
Confidence 99999999988765
No 43
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.33 E-value=2e-11 Score=111.12 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=97.6
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh-hHHHH-----------
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL-LNIIA----------- 226 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~-~Rl~~----------- 226 (315)
+||++++ |+++|.++.|+|+||+|||+||++++.+.+. ..+.+++||+.|.+...- .|+..
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~------~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~ 74 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAK------KQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLR 74 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH------hCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHh
Confidence 6999995 9999999999999999999999999998764 137889999988632100 01110
Q ss_pred ------------------------------------HH---HHH----HH-----------------------HHHHHHH
Q psy13674 227 ------------------------------------IA---SLV----TL-----------------------VGSRLPM 240 (315)
Q Consensus 227 ------------------------------------ia---er~----~l-----------------------L~~~~~~ 240 (315)
+. ++. +. +..++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~ 154 (242)
T cd00984 75 TGSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRS 154 (242)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHH
Confidence 00 000 00 5678889
Q ss_pred HHHHhhcc-cEEEEEcc-------CCCCccc-----ccccccccccEEEEEEecC--------CCeEEEEEEECCCCCCe
Q psy13674 241 SFHITRED-LIVFFPLN-------ADPKKPV-----GGNIMAHASTTRISLRKGR--------GETRIAKIYDSPDMPEA 299 (315)
Q Consensus 241 L~~LA~e~-iaVV~~~~-------~~~~~Pa-----lG~~wah~~~tRl~L~k~~--------g~~R~~~I~KSp~~p~~ 299 (315)
|+.+|+++ ++|+.+.. .....|. +...+.+.++..+.|.+.+ ...-.+.|.|++..+.+
T Consensus 155 L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g 234 (242)
T cd00984 155 LKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTG 234 (242)
T ss_pred HHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCe
Confidence 99999999 88776432 1112343 2345788899999998753 12346899999999988
Q ss_pred eEEEE
Q psy13674 300 EAMFA 304 (315)
Q Consensus 300 ~~~F~ 304 (315)
.+.+.
T Consensus 235 ~~~l~ 239 (242)
T cd00984 235 TVELR 239 (242)
T ss_pred eEEEE
Confidence 86654
No 44
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.32 E-value=2e-10 Score=114.26 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=104.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC-------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN------------- 216 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~------------- 216 (315)
...++||.+.||+++ ||+++|.++.|.|+||+|||.|+++++.+++. ..+.+|+|++.|-
T Consensus 175 ~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~------~~g~~vl~~SlEm~~~~i~~R~~~~~ 247 (434)
T TIGR00665 175 ITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAI------KEGKPVAFFSLEMSAEQLAMRMLSSE 247 (434)
T ss_pred CCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHH------hCCCeEEEEeCcCCHHHHHHHHHHHh
Confidence 567999999999999 69999999999999999999999999988653 1234566666553
Q ss_pred ---------------------------------------CCChhhHHHHHHHHH----HH--------------------
Q psy13674 217 ---------------------------------------TLYPLLNIIAIASLV----TL-------------------- 233 (315)
Q Consensus 217 ---------------------------------------~F~~~~Rl~~iaer~----~l-------------------- 233 (315)
.++.+ .+...++++ ++
T Consensus 248 ~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~-~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r 326 (434)
T TIGR00665 248 SRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTIT-ELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENR 326 (434)
T ss_pred cCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCH
Confidence 22222 222111111 00
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEcc--C-----CCCcccc-----cccccccccEEEEEEecC--------CCeEEEE
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPLN--A-----DPKKPVG-----GNIMAHASTTRISLRKGR--------GETRIAK 289 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~~--~-----~~~~Pal-----G~~wah~~~tRl~L~k~~--------g~~R~~~ 289 (315)
+..+++.|+.+|+++ |+|++... . ....|.+ ...+...++..++|.|.. .+.-.+.
T Consensus 327 ~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~~~~~~~~l~ 406 (434)
T TIGR00665 327 QQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDKGIAEII 406 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCCCcCCCCceEEE
Confidence 567788999999999 88886432 1 1245654 246788889999998742 1235679
Q ss_pred EEECCCCCCeeEEEEEe
Q psy13674 290 IYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 290 I~KSp~~p~~~~~F~It 306 (315)
|.|+++.+.+.+.|.-.
T Consensus 407 v~KnR~G~~g~~~l~~~ 423 (434)
T TIGR00665 407 IAKQRNGPTGTVKLAFQ 423 (434)
T ss_pred EecCCCCCCCeEEEEEe
Confidence 99999999888665443
No 45
>PRK08760 replicative DNA helicase; Provisional
Probab=99.31 E-value=1.3e-10 Score=117.85 Aligned_cols=155 Identities=13% Similarity=0.159 Sum_probs=107.8
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c-----------------------
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T----------------------- 201 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~----------------------- 201 (315)
....|+||.+.||+++ ||+.+|.++.|.|.||+|||.|++++|.+++.... +
T Consensus 208 ~~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~ 286 (476)
T PRK08760 208 NITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINA 286 (476)
T ss_pred CCCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcH
Confidence 3467999999999998 67999999999999999999999999988753100 0
Q ss_pred ----cCCC---------------CCeEEEEeCCCCCChhhHHHHHHHHH----H----------H-------------HH
Q psy13674 202 ----RGYT---------------GGKVIYVDSENTLYPLLNIIAIASLV----T----------L-------------VG 235 (315)
Q Consensus 202 ----~gg~---------------~~~vvyIDtE~~F~~~~Rl~~iaer~----~----------l-------------L~ 235 (315)
.|.. ....+|||....+.++ .+...++++ + + +.
T Consensus 287 ~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~-~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~ 365 (476)
T PRK08760 287 QRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPE-VLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEIS 365 (476)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHH-HHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHH
Confidence 0000 0124555555455555 444444332 1 0 67
Q ss_pred HHHHHHHHHhhcc-cEEEEEcc-------CCCCcccc-----cccccccccEEEEEEecC------C---CeEEEEEEEC
Q psy13674 236 SRLPMSFHITRED-LIVFFPLN-------ADPKKPVG-----GNIMAHASTTRISLRKGR------G---ETRIAKIYDS 293 (315)
Q Consensus 236 ~~~~~L~~LA~e~-iaVV~~~~-------~~~~~Pal-----G~~wah~~~tRl~L~k~~------g---~~R~~~I~KS 293 (315)
++++.||.||+++ |+||+.-+ ...+.|.+ ...|..-+++.++|.|.. . +.-.+.|.|+
T Consensus 366 ~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~eliiaKn 445 (476)
T PRK08760 366 EISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAEIIIGKH 445 (476)
T ss_pred HHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcccccccCCCceEEEEEcc
Confidence 8999999999999 98886422 12356765 345888889999998741 1 1346789999
Q ss_pred CCCCCeeEEEEE
Q psy13674 294 PDMPEAEAMFAI 305 (315)
Q Consensus 294 p~~p~~~~~F~I 305 (315)
++.|.+.+.+.-
T Consensus 446 R~G~~g~~~l~f 457 (476)
T PRK08760 446 RGGPTGSCKLKF 457 (476)
T ss_pred CCCCCceEEEEE
Confidence 999999866544
No 46
>PRK07004 replicative DNA helicase; Provisional
Probab=99.26 E-value=2.7e-10 Score=115.00 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=108.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~------------------------ 201 (315)
...++||.+.||+++ ||+.+|.++.|.|.||+|||.|+++++.++++... +
T Consensus 193 ~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~ 271 (460)
T PRK07004 193 VTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQH 271 (460)
T ss_pred CCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHH
Confidence 467999999999998 69999999999999999999999999887653100 0
Q ss_pred ---c---------------CCCCCeEEEEeCCCCCChhhHHHHHHHHH----H-H-----------------------HH
Q psy13674 202 ---R---------------GYTGGKVIYVDSENTLYPLLNIIAIASLV----T-L-----------------------VG 235 (315)
Q Consensus 202 ---~---------------gg~~~~vvyIDtE~~F~~~~Rl~~iaer~----~-l-----------------------L~ 235 (315)
. +......+|||....+++. .+...++++ + + +.
T Consensus 272 ~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~-~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~ 350 (460)
T PRK07004 272 RMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPM-ELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEIS 350 (460)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHH
Confidence 0 0011234666666666655 444433322 1 1 78
Q ss_pred HHHHHHHHHhhcc-cEEEEEcc-------CCCCccccc-----ccccccccEEEEEEecC-----C---CeEEEEEEECC
Q psy13674 236 SRLPMSFHITRED-LIVFFPLN-------ADPKKPVGG-----NIMAHASTTRISLRKGR-----G---ETRIAKIYDSP 294 (315)
Q Consensus 236 ~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG-----~~wah~~~tRl~L~k~~-----g---~~R~~~I~KSp 294 (315)
++++.||.||+++ |+||..-+ ...+.|.+. ..|..-+++.++|.|.+ . +.-.+.|.|++
T Consensus 351 ~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~g~~e~ivaKnR 430 (460)
T PRK07004 351 EISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQR 430 (460)
T ss_pred HHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCCCceEEEEEccC
Confidence 8999999999999 99886322 123567653 35788889999998742 1 12356899999
Q ss_pred CCCCeeEEEEE
Q psy13674 295 DMPEAEAMFAI 305 (315)
Q Consensus 295 ~~p~~~~~F~I 305 (315)
+.|.+.+.+.-
T Consensus 431 ~G~~G~v~l~f 441 (460)
T PRK07004 431 NGPIGPVRLTF 441 (460)
T ss_pred CCCCceEEEEE
Confidence 99999866544
No 47
>PHA02542 41 41 helicase; Provisional
Probab=99.26 E-value=2.2e-10 Score=116.02 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=101.5
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC------------
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN------------ 216 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~------------ 216 (315)
....|+||++.||++++||+.+|.++.|+|.||+|||+|++++|.++.. .+.+|+|++-|-
T Consensus 168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~-------~g~~Vl~fSLEM~~~ql~~Rl~a~ 240 (473)
T PHA02542 168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ-------QGYNVLYISMEMAEEVIAKRIDAN 240 (473)
T ss_pred CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh-------cCCcEEEEeccCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999988742 234555555442
Q ss_pred ----------------------------------------CCChhhHHHHHHHHH----H--H-----------------
Q psy13674 217 ----------------------------------------TLYPLLNIIAIASLV----T--L----------------- 233 (315)
Q Consensus 217 ----------------------------------------~F~~~~Rl~~iaer~----~--l----------------- 233 (315)
..++. .+...++++ + +
T Consensus 241 ~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~-~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~ 319 (473)
T PHA02542 241 LLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAG-HFRALLNELKLKKNFKPDVIIVDYLGICASSRLR 319 (473)
T ss_pred HcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH-HHHHHHHHHHHhcCCCCCEEEEechhhccCCccc
Confidence 22222 222222221 1 1
Q ss_pred ---------HHHHHHHHHHHhhcc-cEEEEEcc--CC---CCcccccc-----cccccccEEEEEEecC----CCeEEEE
Q psy13674 234 ---------VGSRLPMSFHITRED-LIVFFPLN--AD---PKKPVGGN-----IMAHASTTRISLRKGR----GETRIAK 289 (315)
Q Consensus 234 ---------L~~~~~~L~~LA~e~-iaVV~~~~--~~---~~~PalG~-----~wah~~~tRl~L~k~~----g~~R~~~ 289 (315)
+..+++.||.||+++ |+||+.-+ .+ ...|.+.+ ...+.++..++|+|.. .+...+.
T Consensus 320 ~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~eli 399 (473)
T PHA02542 320 VSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIETEELAQMGQQLVK 399 (473)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEecCcccccCCeEEEE
Confidence 456889999999999 99886322 11 11265533 4778888999998742 1356678
Q ss_pred EEECCCCCCe
Q psy13674 290 IYDSPDMPEA 299 (315)
Q Consensus 290 I~KSp~~p~~ 299 (315)
|.|+++.|.+
T Consensus 400 v~KnR~G~~g 409 (473)
T PHA02542 400 QLKSRYGDKN 409 (473)
T ss_pred EecCCCCCCC
Confidence 9999999976
No 48
>PRK05748 replicative DNA helicase; Provisional
Probab=99.25 E-value=2.2e-10 Score=114.84 Aligned_cols=149 Identities=19% Similarity=0.144 Sum_probs=105.0
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC--------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE-------------- 215 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE-------------- 215 (315)
...|+||++.||+++ ||+.+|.++.|.|.||+|||.|+++++.+++.. .+.+|+|++.|
T Consensus 183 ~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~------~g~~v~~fSlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 183 ITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATK------TDKNVAIFSLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh------CCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 468999999999998 599999999999999999999999999886531 23345555544
Q ss_pred --------------------------------------CCCChhhHHHHHHHH----H-HH-------------------
Q psy13674 216 --------------------------------------NTLYPLLNIIAIASL----V-TL------------------- 233 (315)
Q Consensus 216 --------------------------------------~~F~~~~Rl~~iaer----~-~l------------------- 233 (315)
..++++ .+...+++ . ++
T Consensus 256 ~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~-~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~ 334 (448)
T PRK05748 256 GNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVT-EIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGE 334 (448)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCc
Confidence 333333 22222211 1 11
Q ss_pred -----HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCcccc-----cccccccccEEEEEEecC-----C---CeEE
Q psy13674 234 -----VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVG-----GNIMAHASTTRISLRKGR-----G---ETRI 287 (315)
Q Consensus 234 -----L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~Pal-----G~~wah~~~tRl~L~k~~-----g---~~R~ 287 (315)
+.++++.|+.||+++ |+||...+ ...+.|.+ ...+...+++.++|.|.. . +.-.
T Consensus 335 ~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~~~e 414 (448)
T PRK05748 335 NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIE 414 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCCceE
Confidence 667889999999999 88886422 12356754 345778889999998742 1 1335
Q ss_pred EEEEECCCCCCeeEEEEEe
Q psy13674 288 AKIYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 288 ~~I~KSp~~p~~~~~F~It 306 (315)
+.|.|+++.|.+.+.|.-.
T Consensus 415 ~~v~K~R~G~~g~~~~~~~ 433 (448)
T PRK05748 415 IIIAKQRNGPVGTVELAFQ 433 (448)
T ss_pred EEEeccCCCCCceEEEEEe
Confidence 6888999999998766554
No 49
>PRK06321 replicative DNA helicase; Provisional
Probab=99.24 E-value=3.1e-10 Score=114.91 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=108.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~------------------------ 201 (315)
...|+||...||+++ ||+.+|.++.|+|.||+|||.|++++|.+++.... +
T Consensus 206 ~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~ 284 (472)
T PRK06321 206 ISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESK 284 (472)
T ss_pred CCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHH
Confidence 457999999999999 59999999999999999999999999988743100 0
Q ss_pred ---cC---------------CCCCeEEEEeCCCCCChhhHHHHHHHHH----H----------H----------------
Q psy13674 202 ---RG---------------YTGGKVIYVDSENTLYPLLNIIAIASLV----T----------L---------------- 233 (315)
Q Consensus 202 ---~g---------------g~~~~vvyIDtE~~F~~~~Rl~~iaer~----~----------l---------------- 233 (315)
.| ......+|||....++.+ .+...++++ + +
T Consensus 285 ~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~-~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~e 363 (472)
T PRK06321 285 KISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKIT-DLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTE 363 (472)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHH-HHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHH
Confidence 00 011235666655555555 444444332 1 0
Q ss_pred HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCccccc-----ccccccccEEEEEEecC-----C--CeEEEEEEEC
Q psy13674 234 VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGG-----NIMAHASTTRISLRKGR-----G--ETRIAKIYDS 293 (315)
Q Consensus 234 L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG-----~~wah~~~tRl~L~k~~-----g--~~R~~~I~KS 293 (315)
+.++++.||.+|+++ |+||..-+ ...++|.+. ..+..-+++.++|.|.. . +.-.+.|.|+
T Consensus 364 i~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~elivaKn 443 (472)
T PRK06321 364 ISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKN 443 (472)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCCCCceEEEEEec
Confidence 566889999999999 98885322 123567653 35788889999998731 1 2346789999
Q ss_pred CCCCCeeEEEEEe
Q psy13674 294 PDMPEAEAMFAIT 306 (315)
Q Consensus 294 p~~p~~~~~F~It 306 (315)
++.|.+.+.|.-.
T Consensus 444 R~G~~G~v~l~f~ 456 (472)
T PRK06321 444 RHGSIGSVPLVFE 456 (472)
T ss_pred CCCCCceEEEEEe
Confidence 9999988666543
No 50
>PRK05595 replicative DNA helicase; Provisional
Probab=99.23 E-value=1.5e-10 Score=116.03 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=105.4
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC--------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE-------------- 215 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE-------------- 215 (315)
...++||.+.||+++ ||+.+|.++.|.|.||+|||+|+++++.++++. .+.+|+|++.|
T Consensus 181 ~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~------~g~~vl~fSlEms~~~l~~R~~a~~ 253 (444)
T PRK05595 181 TTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALR------EGKSVAIFSLEMSKEQLAYKLLCSE 253 (444)
T ss_pred CCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH------cCCcEEEEecCCCHHHHHHHHHHHh
Confidence 457999999999998 799999999999999999999999999875431 23455565555
Q ss_pred --------------------------------------CCCChhhHHHHHHHHH----H----------H----------
Q psy13674 216 --------------------------------------NTLYPLLNIIAIASLV----T----------L---------- 233 (315)
Q Consensus 216 --------------------------------------~~F~~~~Rl~~iaer~----~----------l---------- 233 (315)
..++++ .+...++++ + +
T Consensus 254 ~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~-~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r 332 (444)
T PRK05595 254 ANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVM-EMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESR 332 (444)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccH
Confidence 233333 222222221 0 0
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCccccc-----ccccccccEEEEEEecC-----C---CeEEEE
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGG-----NIMAHASTTRISLRKGR-----G---ETRIAK 289 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG-----~~wah~~~tRl~L~k~~-----g---~~R~~~ 289 (315)
+.++++.||.||+++ |+|+..-+ ...+.|.+. ..+..-+++.++|.|.. . +.-.+.
T Consensus 333 ~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~~~~~~~e~i 412 (444)
T PRK05595 333 QQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKETEDKNVAECI 412 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccccccccCCCCceEEE
Confidence 678889999999999 88886321 122467654 35777789999998642 1 134578
Q ss_pred EEECCCCCCeeEEEEEe
Q psy13674 290 IYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 290 I~KSp~~p~~~~~F~It 306 (315)
|.|+++.|.+.+.|.-.
T Consensus 413 v~K~R~G~~g~~~~~~~ 429 (444)
T PRK05595 413 IAKQRNGPTGTVKLAWL 429 (444)
T ss_pred EEccCCCCCceEEEEEe
Confidence 99999999998776544
No 51
>PRK08506 replicative DNA helicase; Provisional
Probab=99.22 E-value=4.2e-10 Score=113.89 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=103.7
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEE-------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVI------------------- 210 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vv------------------- 210 (315)
...++||.+.||.++ ||+.+|.++.|.|.||+|||+|++++|.++.- .+.+|+
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~-------~g~~V~~fSlEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALN-------QDKGVAFFSLEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHh-------cCCcEEEEeCcCCHHHHHHHHHHHh
Confidence 467999999999998 89999999999999999999999999988742 123444
Q ss_pred ---------------------------------EEeCCCCCChhhHHHHHHHHH-----HH-------------------
Q psy13674 211 ---------------------------------YVDSENTLYPLLNIIAIASLV-----TL------------------- 233 (315)
Q Consensus 211 ---------------------------------yIDtE~~F~~~~Rl~~iaer~-----~l------------------- 233 (315)
||+..+.++++ .|...++++ ++
T Consensus 244 s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~-~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~ 322 (472)
T PRK08506 244 TSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIH-QVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKD 322 (472)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHH-HHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCC
Confidence 44444444444 333333221 00
Q ss_pred ----HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCcccc-----cccccccccEEEEEEecC--------------
Q psy13674 234 ----VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVG-----GNIMAHASTTRISLRKGR-------------- 282 (315)
Q Consensus 234 ----L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~Pal-----G~~wah~~~tRl~L~k~~-------------- 282 (315)
+..+++.|+.||+++ |+||+.-+ ...+.|.+ ...+..-+++.++|.|..
T Consensus 323 r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~~ 402 (472)
T PRK08506 323 RHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEKKA 402 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEeccccccccccccccccc
Confidence 677888999999999 88885322 12356765 335888889999998741
Q ss_pred ---CC-------------eEEEEEEECCCCCCeeEEEEE
Q psy13674 283 ---GE-------------TRIAKIYDSPDMPEAEAMFAI 305 (315)
Q Consensus 283 ---g~-------------~R~~~I~KSp~~p~~~~~F~I 305 (315)
|. .-.+.|.|+++.|.+.+.+.-
T Consensus 403 ~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~l~f 441 (472)
T PRK08506 403 KKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVKLRF 441 (472)
T ss_pred ccccccccccccccccccceEEEEecCCCCCCceEEEEE
Confidence 00 123688999999988755443
No 52
>PRK09165 replicative DNA helicase; Provisional
Probab=99.20 E-value=2.8e-10 Score=115.82 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=104.3
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccc----cC----CCCCeEEEEeCC------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDET----RG----YTGGKVIYVDSE------ 215 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~----~g----g~~~~vvyIDtE------ 215 (315)
...|+||++.||+++ ||+.+|.++.|.|.||+|||+|++++|.+++....+ .| ..+.+|+|++.|
T Consensus 197 ~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 197 LSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred CCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 467999999999999 799999999999999999999999998887531000 00 013455666555
Q ss_pred ----------------------------------------------CCCChhhHHHHHHHHH----HH------------
Q psy13674 216 ----------------------------------------------NTLYPLLNIIAIASLV----TL------------ 233 (315)
Q Consensus 216 ----------------------------------------------~~F~~~~Rl~~iaer~----~l------------ 233 (315)
..++++ .+...++++ ++
T Consensus 276 ~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~-~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 276 ATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSIS-QLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred HHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHH-HHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 333332 222222221 00
Q ss_pred -------------HHHHHHHHHHHhhcc-cEEEEEc--c-----CCCCccccc-----ccccccccEEEEEEecC-----
Q psy13674 234 -------------VGSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVGG-----NIMAHASTTRISLRKGR----- 282 (315)
Q Consensus 234 -------------L~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG-----~~wah~~~tRl~L~k~~----- 282 (315)
+..+++.|+.||+++ |+||..- . ...++|.+. ..+..-+++.++|.|..
T Consensus 355 ~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~ 434 (497)
T PRK09165 355 GSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVYREEYYLKR 434 (497)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEeehhhhccc
Confidence 567889999999999 9888632 1 123567653 35788889999998631
Q ss_pred -----C---------------CeEEEEEEECCCCCCeeEEEEE
Q psy13674 283 -----G---------------ETRIAKIYDSPDMPEAEAMFAI 305 (315)
Q Consensus 283 -----g---------------~~R~~~I~KSp~~p~~~~~F~I 305 (315)
+ +.-.+.|.|+++.|.+.+.|.-
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~~~f 477 (497)
T PRK09165 435 KEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLAF 477 (497)
T ss_pred cccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEEEEE
Confidence 0 1234578899999999866543
No 53
>PRK05636 replicative DNA helicase; Provisional
Probab=99.19 E-value=3.2e-10 Score=115.73 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=107.9
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~------------------------ 201 (315)
...|+||.+.||+++ ||+.+|.++.|.|.||+|||.|++++|.++++... +
T Consensus 245 ~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~ 323 (505)
T PRK05636 245 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLS 323 (505)
T ss_pred CCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHH
Confidence 467999999999987 79999999999999999999999999887653100 0
Q ss_pred ------------------cCCCCCeEEEEeCCCCCChhhHHHHHHHHH----HH-----------------------HHH
Q psy13674 202 ------------------RGYTGGKVIYVDSENTLYPLLNIIAIASLV----TL-----------------------VGS 236 (315)
Q Consensus 202 ------------------~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~----~l-----------------------L~~ 236 (315)
.+......+|||....++.+ .|...++++ ++ +.+
T Consensus 324 ~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~-~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~ 402 (505)
T PRK05636 324 DMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMM-EIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSE 402 (505)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHH
Confidence 00011234566555555544 444444332 10 778
Q ss_pred HHHHHHHHhhcc-cEEEEEc--c-----CCCCccccc-----ccccccccEEEEEEecC----C----CeEEEEEEECCC
Q psy13674 237 RLPMSFHITRED-LIVFFPL--N-----ADPKKPVGG-----NIMAHASTTRISLRKGR----G----ETRIAKIYDSPD 295 (315)
Q Consensus 237 ~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG-----~~wah~~~tRl~L~k~~----g----~~R~~~I~KSp~ 295 (315)
+++.||.||+++ |+||+.- . ...++|.+. ..+..-+++.++|.|.. . +.-.+.|.|+++
T Consensus 403 isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g~~elivaK~Rn 482 (505)
T PRK05636 403 FSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGEADIILAKHRG 482 (505)
T ss_pred HHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCCceEEEEecCCC
Confidence 999999999999 8888632 2 123457653 36888889999998741 1 134578899999
Q ss_pred CCCeeEEEEEe
Q psy13674 296 MPEAEAMFAIT 306 (315)
Q Consensus 296 ~p~~~~~F~It 306 (315)
.|.+.+.+...
T Consensus 483 G~~Gtv~l~f~ 493 (505)
T PRK05636 483 GPIDTVQVAHQ 493 (505)
T ss_pred CCCceEEEEee
Confidence 99998665443
No 54
>PRK08006 replicative DNA helicase; Provisional
Probab=99.18 E-value=3.7e-10 Score=114.36 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=108.9
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~------------------------ 201 (315)
...++||.+.||.++ ||+.+|.++.|.|.||+|||+|++++|.+++.... +
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~ 282 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQT 282 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHH
Confidence 356999999999998 89999999999999999999999999988653100 0
Q ss_pred ---cCC---------------C-CCeEEEEeCCCCCChhhHHHHHHHHH-----HH-----------------------H
Q psy13674 202 ---RGY---------------T-GGKVIYVDSENTLYPLLNIIAIASLV-----TL-----------------------V 234 (315)
Q Consensus 202 ---~gg---------------~-~~~vvyIDtE~~F~~~~Rl~~iaer~-----~l-----------------------L 234 (315)
.|. . ....+|||....+++. -+...++++ ++ +
T Consensus 283 ~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~-~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei 361 (471)
T PRK08006 283 RIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPT-EVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEI 361 (471)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHH
Confidence 000 1 2234677666666655 444444331 11 7
Q ss_pred HHHHHHHHHHhhcc-cEEEEEc--c-----CCCCccccc-----ccccccccEEEEEEecC-----C---CeEEEEEEEC
Q psy13674 235 GSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVGG-----NIMAHASTTRISLRKGR-----G---ETRIAKIYDS 293 (315)
Q Consensus 235 ~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG-----~~wah~~~tRl~L~k~~-----g---~~R~~~I~KS 293 (315)
.++++.||.||+++ |+||+.- . ...++|.+. ..|..-+++.++|.|.. . +.-.+.|.|+
T Consensus 362 ~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~g~~elivaKn 441 (471)
T PRK08006 362 AEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQ 441 (471)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccccccccCCCCceEEEEecc
Confidence 88999999999999 9888632 2 123567753 35788888999998742 1 1235679999
Q ss_pred CCCCCeeEEEEE
Q psy13674 294 PDMPEAEAMFAI 305 (315)
Q Consensus 294 p~~p~~~~~F~I 305 (315)
++.|.+.+.|..
T Consensus 442 R~G~~G~v~l~f 453 (471)
T PRK08006 442 RNGPIGTVRLTF 453 (471)
T ss_pred cCCCCceEEEEE
Confidence 999998866544
No 55
>PRK08840 replicative DNA helicase; Provisional
Probab=99.16 E-value=1.5e-09 Score=109.73 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=110.3
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----c------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----T------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----~------------------------ 201 (315)
...++||.+.||.++ ||+.+|.++.|.|.||+|||.|++++|.+++.... +
T Consensus 197 ~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~ 275 (464)
T PRK08840 197 VTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQT 275 (464)
T ss_pred CCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHH
Confidence 457999999999998 78999999999999999999999999888753100 0
Q ss_pred ---cCC---------------C-CCeEEEEeCCCCCChhhHHHHHHHHH----H-H-----------------------H
Q psy13674 202 ---RGY---------------T-GGKVIYVDSENTLYPLLNIIAIASLV----T-L-----------------------V 234 (315)
Q Consensus 202 ---~gg---------------~-~~~vvyIDtE~~F~~~~Rl~~iaer~----~-l-----------------------L 234 (315)
.|. . ....+|||....+... .+...++++ + + +
T Consensus 276 ~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~-~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei 354 (464)
T PRK08840 276 KIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPT-EVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEI 354 (464)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHH
Confidence 000 0 1234677766666665 555444332 1 1 7
Q ss_pred HHHHHHHHHHhhcc-cEEEEEc--c-----CCCCccccc-----ccccccccEEEEEEecC-----C---CeEEEEEEEC
Q psy13674 235 GSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVGG-----NIMAHASTTRISLRKGR-----G---ETRIAKIYDS 293 (315)
Q Consensus 235 ~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG-----~~wah~~~tRl~L~k~~-----g---~~R~~~I~KS 293 (315)
.++++.||.||+++ |+||+.- . ...++|.+. ..|..-.+..++|.|.. . +.-.+.|.|+
T Consensus 355 ~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~elivaKn 434 (464)
T PRK08840 355 AEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLKGTAEIIIGKQ 434 (464)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccccCCCcCCCCceEEEEecc
Confidence 88999999999999 8888632 2 123467653 35788889999998741 1 2345688999
Q ss_pred CCCCCeeEEEEEe
Q psy13674 294 PDMPEAEAMFAIT 306 (315)
Q Consensus 294 p~~p~~~~~F~It 306 (315)
++.|.+.+.|...
T Consensus 435 R~G~~G~v~l~f~ 447 (464)
T PRK08840 435 RNGPIGSVRLTFQ 447 (464)
T ss_pred cCCCCceEEEEEe
Confidence 9999998766553
No 56
>PRK06904 replicative DNA helicase; Validated
Probab=99.16 E-value=2.6e-09 Score=108.22 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=111.3
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC----Cccc------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL----PDET------------------------ 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l----p~~~------------------------ 201 (315)
...++||.+.||+++ ||+.+|.++.|.|.||+|||.|++++|.+++. |.-+
T Consensus 201 ~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~ 279 (472)
T PRK06904 201 VTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQT 279 (472)
T ss_pred CCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHH
Confidence 467999999999998 79999999999999999999999999887653 1100
Q ss_pred ---cC-CC----------------CCeEEEEeCCCCCChhhHHHHHHHHH-----H----------H-------------
Q psy13674 202 ---RG-YT----------------GGKVIYVDSENTLYPLLNIIAIASLV-----T----------L------------- 233 (315)
Q Consensus 202 ---~g-g~----------------~~~vvyIDtE~~F~~~~Rl~~iaer~-----~----------l------------- 233 (315)
.| .. ....+|||....+.+. .+...++++ + +
T Consensus 280 ~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~-~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~e 358 (472)
T PRK06904 280 KIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPT-ELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLE 358 (472)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHH-HHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHH
Confidence 11 01 1123888877777776 666555432 1 1
Q ss_pred HHHHHHHHHHHhhcc-cEEEEEc--c-----CCCCccccc-----ccccccccEEEEEEecC------C---CeEEEEEE
Q psy13674 234 VGSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVGG-----NIMAHASTTRISLRKGR------G---ETRIAKIY 291 (315)
Q Consensus 234 L~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG-----~~wah~~~tRl~L~k~~------g---~~R~~~I~ 291 (315)
++++++.||.||+++ |+||+.- . ...++|.+. ..+..-++..++|.|.. . +.-.+.|.
T Consensus 359 i~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~~eliva 438 (472)
T PRK06904 359 IAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKGVAEIIIG 438 (472)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccccCCCceEEEEe
Confidence 788999999999999 8888632 2 223567653 34777788889998741 1 12346889
Q ss_pred ECCCCCCeeEEEEEe
Q psy13674 292 DSPDMPEAEAMFAIT 306 (315)
Q Consensus 292 KSp~~p~~~~~F~It 306 (315)
|+++.|.+.+.|...
T Consensus 439 KnR~G~~G~v~l~f~ 453 (472)
T PRK06904 439 KQRNGPIGRVRLAFQ 453 (472)
T ss_pred ccCCCCCceEEEEEc
Confidence 999999998665543
No 57
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=6.3e-10 Score=101.96 Aligned_cols=60 Identities=38% Similarity=0.525 Sum_probs=54.4
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
.|++|.++||+-||||+|.|++..|.|+.|+|||.||.++|.-... .+.++.|+.||.+-
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~-------~g~~v~yvsTe~T~ 68 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM-------NGYRVTYVSTELTV 68 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHh-------CCceEEEEEechhH
Confidence 5999999999999999999999999999999999999999987653 57889999999653
No 58
>PRK06749 replicative DNA helicase; Provisional
Probab=99.10 E-value=2.3e-09 Score=107.39 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=105.6
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeE--------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKV-------------------- 209 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~v-------------------- 209 (315)
...|+||.+.||+++ ||+.+|.++.|.|.||+|||.|+++++.+++. .+..|
T Consensus 166 ~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~-------~g~~v~~fSlEMs~~ql~~R~ls~~ 237 (428)
T PRK06749 166 ITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAK-------SGAAVGLFSLEMSSKQLLKRMASCV 237 (428)
T ss_pred CCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHHh-------cCCCEEEEEeeCCHHHHHHHHHHhc
Confidence 467999999999997 79999999999999999999999999988752 12233
Q ss_pred ----------------------------------EEEeCCCCCChhhHHHHHHHHH----H----H--------------
Q psy13674 210 ----------------------------------IYVDSENTLYPLLNIIAIASLV----T----L-------------- 233 (315)
Q Consensus 210 ----------------------------------vyIDtE~~F~~~~Rl~~iaer~----~----l-------------- 233 (315)
+||+....++.. .+...++++ + +
T Consensus 238 ~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~-~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~ 316 (428)
T PRK06749 238 GEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQ-DIWMQTRKLKRKHGDKKILIIVDYLQLITGDPK 316 (428)
T ss_pred cCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCC
Confidence 455544444443 333333221 1 0
Q ss_pred --------HHHHHHHHHHHhhcc-cEEEEEc--c-----CCCCcccccc-----cccccccEEEEEEecC-----C---C
Q psy13674 234 --------VGSRLPMSFHITRED-LIVFFPL--N-----ADPKKPVGGN-----IMAHASTTRISLRKGR-----G---E 284 (315)
Q Consensus 234 --------L~~~~~~L~~LA~e~-iaVV~~~--~-----~~~~~PalG~-----~wah~~~tRl~L~k~~-----g---~ 284 (315)
+.++++.||.+|+++ |+||..- . ...++|.+.+ .+..-+++.++|.|.. . +
T Consensus 317 ~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~~~~ 396 (428)
T PRK06749 317 HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKE 396 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccccccCCC
Confidence 667899999999999 8888632 2 1235776533 5777789999998742 1 2
Q ss_pred eEEEEEEECCCCCCeeEEEEEe
Q psy13674 285 TRIAKIYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 285 ~R~~~I~KSp~~p~~~~~F~It 306 (315)
.-.+.|.|+++.|.+.+.+.-.
T Consensus 397 ~~eliiaKnR~G~~G~v~~~f~ 418 (428)
T PRK06749 397 MTEIHVAKHRNGPVGSFKLRFL 418 (428)
T ss_pred ceEEEEecCCCCCCceEEEEEe
Confidence 3456899999999998665543
No 59
>PRK05973 replicative DNA helicase; Provisional
Probab=99.05 E-value=2.5e-09 Score=99.50 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhH
Q psy13674 108 RRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187 (315)
Q Consensus 108 ~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqL 187 (315)
.+.|++.++++..++-.=+.. .-||.+=..+-..-.. .. -.|++ .||+++|.++.|+|+||+|||.|
T Consensus 14 a~~~~~~~~~~~~~~~~~~a~-----~~g~~~w~~~~~~~~~------~~-p~~~l-~GGl~~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 14 AKLLSRAQNIPLHEALDRIAA-----EEGFSSWSLLAAKAAA------TT-PAEEL-FSQLKPGDLVLLGARPGHGKTLL 80 (237)
T ss_pred HHHHHHhcCCcHHHHHHHHHH-----HhccchHHHHHHhccC------CC-CHHHh-cCCCCCCCEEEEEeCCCCCHHHH
Confidence 467888889988765332221 2355543333221111 11 27885 48999999999999999999999
Q ss_pred HHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 188 SHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 188 alqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
|++++.+.+. .+.+|+||+.|.+
T Consensus 81 alqfa~~~a~-------~Ge~vlyfSlEes 103 (237)
T PRK05973 81 GLELAVEAMK-------SGRTGVFFTLEYT 103 (237)
T ss_pred HHHHHHHHHh-------cCCeEEEEEEeCC
Confidence 9999998753 4678999998853
No 60
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.02 E-value=4e-09 Score=105.58 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=113.9
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccc----------------------------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDET---------------------------- 201 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~---------------------------- 201 (315)
...++||...||+++ +|+.+|.++.+++.||.|||.||+++|.+++.-.+.
T Consensus 176 ~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~ 254 (435)
T COG0305 176 LIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIESS 254 (435)
T ss_pred CcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHhhccccccchh
Confidence 588999999999999 559999999999999999999999999998751110
Q ss_pred ------------------cCCCCCeEEEEeCCCCCChhhHHHHHHHHH----HH-----------------------HHH
Q psy13674 202 ------------------RGYTGGKVIYVDSENTLYPLLNIIAIASLV----TL-----------------------VGS 236 (315)
Q Consensus 202 ------------------~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~----~l-----------------------L~~ 236 (315)
.+......+|||-...+++. -+..-++|. ++ +.+
T Consensus 255 kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~-eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~~~r~qevs~ 333 (435)
T COG0305 255 KLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTIT-EIRSKARRLKLKHNLGLIVIDYLQLMTGGKKSENRKQEVSE 333 (435)
T ss_pred ccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHH-HHHHHHHHHHHhcCccEEEEEEEEeecccccchhHHHHHHH
Confidence 11112334666666666555 444433332 11 788
Q ss_pred HHHHHHHHhhcc-cEEEEEcc-------CCCCcccccc-----cccccccEEEEEEecC--------CCeEEEEEEECCC
Q psy13674 237 RLPMSFHITRED-LIVFFPLN-------ADPKKPVGGN-----IMAHASTTRISLRKGR--------GETRIAKIYDSPD 295 (315)
Q Consensus 237 ~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG~-----~wah~~~tRl~L~k~~--------g~~R~~~I~KSp~ 295 (315)
+.+.|+.||++. |+|+...+ ...++|.+.. +...-.+..++++|.+ +..-.+.|.|+++
T Consensus 334 iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y~~~~~~~g~aeiIi~K~Rn 413 (435)
T COG0305 334 ISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTPDRGEAEVIVAKNRN 413 (435)
T ss_pred HHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhccCCCCCCceEEEEEEeccC
Confidence 999999999999 99996322 2235676532 4666778888998752 2355678999999
Q ss_pred CCCeeEEEEEeCCC
Q psy13674 296 MPEAEAMFAITNGG 309 (315)
Q Consensus 296 ~p~~~~~F~It~~G 309 (315)
.|.+++.+......
T Consensus 414 Gp~GtV~l~f~~~~ 427 (435)
T COG0305 414 GPTGTVKLAFDPQF 427 (435)
T ss_pred CCCceEEEEEeccc
Confidence 99999887766543
No 61
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.01 E-value=3.7e-10 Score=99.08 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=50.4
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccC---CCCCeEEEEeCCCCC-ChhhHHH
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG---YTGGKVIYVDSENTL-YPLLNII 225 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~g---g~~~~vvyIDtE~~F-~~~~Rl~ 225 (315)
...+.++.+.+|.++.|+++.|.++.|+|++|+|||+|+++++..+.....++| ....+|+||++|.+. ...+|+.
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 345888999999999999999999999999999999999999998875332222 146899999999875 2222566
Q ss_pred HHHH
Q psy13674 226 AIAS 229 (315)
Q Consensus 226 ~iae 229 (315)
.+..
T Consensus 91 ~~~~ 94 (193)
T PF13481_consen 91 ALLQ 94 (193)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 5554
No 62
>PRK07773 replicative DNA helicase; Validated
Probab=98.90 E-value=1.2e-08 Score=110.54 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.9
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
...|+||++.||+++ ||+.+|.++.|+|.||+|||.||+++|.+++.
T Consensus 197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~ 243 (886)
T PRK07773 197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAI 243 (886)
T ss_pred CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 568999999999998 99999999999999999999999999988764
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.84 E-value=5.9e-08 Score=84.39 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=32.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
++.|+|+||+|||.||++++...+. .+.+|+|+++|.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-------~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-------RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-------CCCcEEEEECCCC
Confidence 4789999999999999999988752 5788999999853
No 64
>KOG2859|consensus
Probab=98.76 E-value=4.5e-08 Score=90.29 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=55.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIAS 229 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iae 229 (315)
..|.|.||.||.++|||++..|+++.|.+|+. +||.+-.|+|||+...|+.. ||.++.+
T Consensus 36 daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~-~GGl~~~VLfidld~~fd~l-rL~~~l~ 94 (293)
T KOG2859|consen 36 DAGTLVEISGPGNSGKTLVLQQLVAHCILPKK-FGGLQWSVLFIDLDHKFDRL-RLAKSLR 94 (293)
T ss_pred ccCcEEEEeCCCCccHHHHHHHHHHHeecccc-cCCceeEEEEEeccccccHH-HHHHHHH
Confidence 36899999999999999999999999999998 89999999999999999998 8887765
No 65
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.72 E-value=1.6e-07 Score=86.27 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=93.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCC-----CCCeEEEEeCCCCCC-hhhHHHHHHHHHH------------
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY-----TGGKVIYVDSENTLY-PLLNIIAIASLVT------------ 232 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg-----~~~~vvyIDtE~~F~-~~~Rl~~iaer~~------------ 232 (315)
|.+..|+|++|+|||+|++++|++++.+.++.|+ ..++|+||+.|.+.. ...|+..+...++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 6788999999999999999999999877664441 468999999998654 1226655543210
Q ss_pred --------------------------H--------------------------HHHHHHHHHHHhhcc-cEEEEEcc---
Q psy13674 233 --------------------------L--------------------------VGSRLPMSFHITRED-LIVFFPLN--- 256 (315)
Q Consensus 233 --------------------------l--------------------------L~~~~~~L~~LA~e~-iaVV~~~~--- 256 (315)
+ ...++..|+++++++ ++|+..-.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 0 345677888889888 77775321
Q ss_pred -C-----CCCcccccccccccccEEEEEEecC-------C---C----eEEEEEEECCCC-CCee-EEEEEeCCCc
Q psy13674 257 -A-----DPKKPVGGNIMAHASTTRISLRKGR-------G---E----TRIAKIYDSPDM-PEAE-AMFAITNGGI 310 (315)
Q Consensus 257 -~-----~~~~PalG~~wah~~~tRl~L~k~~-------g---~----~R~~~I~KSp~~-p~~~-~~F~It~~GI 310 (315)
+ ......|...|...+...+.|.+.. | + .....+.|+... |+.. ..|.-.++|+
T Consensus 161 ~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~w~~~~~~~~ 236 (239)
T cd01125 161 GSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADRWYRRNSGGV 236 (239)
T ss_pred ccccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCeEEEEccCcc
Confidence 1 1122345667888888888887632 1 1 222367788886 6554 7777776665
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=4.7e-06 Score=69.36 Aligned_cols=40 Identities=38% Similarity=0.618 Sum_probs=33.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
++.|+|+||+|||+||.+++..... .++.++||+.+..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-------KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-------cCCEEEEEECCcchH
Confidence 4789999999999999999987642 478899999997664
No 67
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=98.06 E-value=9.3e-06 Score=59.75 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=49.9
Q ss_pred hHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy13674 77 DILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130 (315)
Q Consensus 77 ~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~ 130 (315)
+.|.+ +||++....+|.++||.|++||+..++.+|+++.|+++..+++|++++.
T Consensus 5 ~~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 5 DDLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred HhhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 34555 7999999999999999999999999999999999999999999998875
No 68
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.05 E-value=3.6e-06 Score=81.66 Aligned_cols=123 Identities=20% Similarity=0.171 Sum_probs=85.3
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccC---CCCCeEEEEeCCCCCChh--hHHHHHHHHHHH---------
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG---YTGGKVIYVDSENTLYPL--LNIIAIASLVTL--------- 233 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~g---g~~~~vvyIDtE~~F~~~--~Rl~~iaer~~l--------- 233 (315)
+..|....|+|++|+|||++++++|.......+|+| -..++|+||+.|-. +++ .|+..+..+.++
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a~mgLsPadvrn~d 164 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRARMGLSPADVRNMD 164 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHHHcCCChHhhhhee
Confidence 467778889999999999999999998877666555 23689999999942 221 155555554322
Q ss_pred ----------------------------------------------------HHHHHHHHHHHhhcc-cEEEEEc-----
Q psy13674 234 ----------------------------------------------------VGSRLPMSFHITRED-LIVFFPL----- 255 (315)
Q Consensus 234 ----------------------------------------------------L~~~~~~L~~LA~e~-iaVV~~~----- 255 (315)
+..|.+.+++||..+ ++|+..-
T Consensus 165 ltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hHtsks 244 (402)
T COG3598 165 LTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHHTSKS 244 (402)
T ss_pred ccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 678899999999999 9988521
Q ss_pred -cCCCCcccccccccccccEEEEEEecCCC-eEEEEEE
Q psy13674 256 -NADPKKPVGGNIMAHASTTRISLRKGRGE-TRIAKIY 291 (315)
Q Consensus 256 -~~~~~~PalG~~wah~~~tRl~L~k~~g~-~R~~~I~ 291 (315)
..+..--.++..|.....+++++...++. -|..++-
T Consensus 245 s~~~ksgrsGs~~dg~~l~~~l~l~~tE~~~grtl~~e 282 (402)
T COG3598 245 SGKNKSGRSGSVSDGKFLTTPLMLAYTEGKSGRTLTIE 282 (402)
T ss_pred cCCCCCCCCCccCccHHHhhHHHHhcccccccccccch
Confidence 11212234556788888888888765443 3444333
No 69
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=97.83 E-value=5.7e-05 Score=52.97 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhH
Q psy13674 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132 (315)
Q Consensus 84 l~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~ 132 (315)
+++..+.+|.++||.|++++...++.+|..+.|++..++.+++..+++.
T Consensus 1 i~~~~~~~L~~~G~~s~e~la~~~~~eL~~i~g~~~e~a~~ii~~a~~~ 49 (50)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDLAYVPIDELLSIEGFDEETAKELINRARNA 49 (50)
T ss_pred CCHHHHHHHHHcCCCCHHHHHccCHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999888753
No 70
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=97.66 E-value=6e-05 Score=57.01 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=48.5
Q ss_pred ccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy13674 68 DGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130 (315)
Q Consensus 68 ~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~ 130 (315)
+......||+.|. |+++....|+++||+|+.||+..+..+|.++.|+....++.|.+.+.
T Consensus 6 ~~~~~~~~I~~L~---LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L~ 65 (66)
T PF03118_consen 6 EEELLDTPIEDLG---LSVRAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKLK 65 (66)
T ss_dssp -HHHHCSBGGGST---SBHHHHHHHHCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHHH
T ss_pred hHHHhcCcHHHhC---CCHHHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHHc
Confidence 3344556777775 99999999999999999999999999999999999999888877654
No 71
>PRK10867 signal recognition particle protein; Provisional
Probab=97.41 E-value=0.0041 Score=62.89 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCchHHHhcCCHHHH---HHHhCCCHHHHHHHHHHHHhHhc----cccchHHHHHHhhcCccceecCChh
Q psy13674 87 ADIKKLKSVGLCTIKGVQMTTRRKM---SQIKGFSEAKVDKIKEACMKICD----NSFLTAAQVVEKRKQVFKITTGSTE 159 (315)
Q Consensus 87 ~~i~kL~~aGi~Tv~dll~~~~~~L---~~~~gis~~~v~ki~~~~~~~~~----~~~~tA~ell~~~~~~~~isTG~~~ 159 (315)
..+++|...+..|-+++-. .-++| .-..+++..-|.++++.+.+.+. ....+..+.+. ..-.++
T Consensus 11 ~~~~~l~~~~~~~e~~i~~-~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~v~~e 81 (433)
T PRK10867 11 SAFKKLRGKGRLTEADIKE-ALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVI--------KIVNDE 81 (433)
T ss_pred HHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHH--------HHHHHH
Confidence 4456666666666554431 12233 23358888889999888876542 11122222110 001123
Q ss_pred HHHhhcCC---C----CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhh--HHHHHHHH
Q psy13674 160 LDKILGGG---I----ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLL--NIIAIASL 230 (315)
Q Consensus 160 LD~lL~GG---l----~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~--Rl~~iaer 230 (315)
|-++|+++ + ....++-++|++|+|||++|..+|..... ..+.+|+.||+. +|++.. ++...+++
T Consensus 82 l~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~------~~G~kV~lV~~D-~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 82 LVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKK------KKKKKVLLVAAD-VYRPAAIEQLKTLGEQ 154 (433)
T ss_pred HHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHH------hcCCcEEEEEcc-ccchHHHHHHHHHHhh
Confidence 44445331 1 12478999999999999999999987642 126789999987 577741 34444555
Q ss_pred HH
Q psy13674 231 VT 232 (315)
Q Consensus 231 ~~ 232 (315)
.+
T Consensus 155 ~g 156 (433)
T PRK10867 155 IG 156 (433)
T ss_pred cC
Confidence 43
No 72
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.37 E-value=0.00026 Score=56.00 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=34.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+..+.|+|+||+|||+++..+|..... ....++|++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~-------~~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP-------PGGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC-------CCCCEEEECCEEccccC
Confidence 567899999999999999999887642 22579999999655443
No 73
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.0041 Score=62.97 Aligned_cols=127 Identities=21% Similarity=0.128 Sum_probs=71.8
Q ss_pred HHHHHhCCCCchHHHhcCC--HHHHHHHhCCCHHHHHHHHHHHHhHhcc----ccchHHHHHHhhcCccceecCChhHHH
Q psy13674 89 IKKLKSVGLCTIKGVQMTT--RRKMSQIKGFSEAKVDKIKEACMKICDN----SFLTAAQVVEKRKQVFKITTGSTELDK 162 (315)
Q Consensus 89 i~kL~~aGi~Tv~dll~~~--~~~L~~~~gis~~~v~ki~~~~~~~~~~----~~~tA~ell~~~~~~~~isTG~~~LD~ 162 (315)
+.+|...+..|-+++-..- -+...-..++++.-|.++++.+.+.+.. ...+..+.+.+ .=.++|-+
T Consensus 9 ~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~v~~~L~~ 80 (437)
T PRK00771 9 LKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIK--------IVYEELVK 80 (437)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHH--------HHHHHHHH
Confidence 4455555555554443211 1222334578888888888888655421 11222111100 00124555
Q ss_pred hhcCCC------CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh--hHHHHHHHHH
Q psy13674 163 ILGGGI------ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL--LNIIAIASLV 231 (315)
Q Consensus 163 lL~GGl------~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~--~Rl~~iaer~ 231 (315)
+|+++- ....++-++|++|+|||++|..+|....- .+.+|++|++. +|++. ..+..++++.
T Consensus 81 ~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~-------~g~kV~lV~~D-~~R~aa~eQL~~la~~~ 149 (437)
T PRK00771 81 LLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKK-------KGLKVGLVAAD-TYRPAAYDQLKQLAEKI 149 (437)
T ss_pred HhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEecCC-CCCHHHHHHHHHHHHHc
Confidence 564431 23568889999999999999999976541 35688888876 46663 0244455543
No 74
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.16 E-value=0.00066 Score=60.04 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=33.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++.|.|++|||||+||.+++.. .+.+++|++|...|..+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----------~~~~~~y~at~~~~d~e 39 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----------LGGPVTYIATAEAFDDE 39 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----------cCCCeEEEEccCcCCHH
Confidence 5789999999999999999864 24699999999888765
No 75
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.14 E-value=0.011 Score=57.46 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=55.7
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhcc-ccchH---HHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhH
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICDN-SFLTA---AQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~~-~~~tA---~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqL 187 (315)
.-..+++++-+++|++.+.+.... ...+. .+.+.+. -...+....+.++. .-..+.++-++|++|+|||++
T Consensus 56 L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~~~~----~~~~~~vi~lvGpnGsGKTTt 130 (318)
T PRK10416 56 LIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEE-LAEILEPVEKPLNI----EEKKPFVILVVGVNGVGKTTT 130 (318)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHHhCcCCccccc----cCCCCeEEEEECCCCCcHHHH
Confidence 334578888888888887665421 11111 2222211 00111111111111 123578999999999999999
Q ss_pred HHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 188 alqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
+..+|..... .+++|+.+|+. +|++
T Consensus 131 ~~kLA~~l~~-------~g~~V~Li~~D-~~r~ 155 (318)
T PRK10416 131 IGKLAHKYKA-------QGKKVLLAAGD-TFRA 155 (318)
T ss_pred HHHHHHHHHh-------cCCeEEEEecC-ccch
Confidence 9999987642 35678888765 4654
No 76
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.03 E-value=0.017 Score=54.88 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHH
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalql 191 (315)
....|++..-+++|++.+.... ....+...+.+. -...|.. .+.-+.+ +..+.++-|+|++|+|||+++..+
T Consensus 143 L~~~gv~~~la~~L~~~l~~~~--~~~~~~~~~~~~-l~~~l~~-~~~~~~~----~~~~~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 143 LLRAGVSPELARELLEKLPERA--DAEDAWRWLREA-LEKMLPV-KPEEDEI----LEQGGVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred HHHCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHH-HHHHhcc-CCccccc----cCCCeEEEEECCCCCCHHHHHHHH
Confidence 4456888888888888775421 111122211111 0001110 0000111 235779999999999999999999
Q ss_pred HHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 192 a~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|..... . ..+.+|.+|+++ +|+.
T Consensus 215 a~~~~~----~-~g~~~V~li~~D-~~r~ 237 (282)
T TIGR03499 215 AARFVL----E-HGNKKVALITTD-TYRI 237 (282)
T ss_pred HHHHHH----H-cCCCeEEEEECC-ccch
Confidence 987642 0 123689999987 3543
No 77
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.013 Score=59.36 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=59.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhHhcc-c---cchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhh
Q psy13674 111 MSQIKGFSEAKVDKIKEACMKICDN-S---FLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQ 186 (315)
Q Consensus 111 L~~~~gis~~~v~ki~~~~~~~~~~-~---~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTq 186 (315)
.....|++..-+++|++.+.+.+.. . +..+.+.+.+. -...++...+.+. .-|...+.++-++|++|+|||+
T Consensus 163 ~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~-L~~~l~~~~~~~~---~~g~~~~~vi~lvGptGvGKTT 238 (432)
T PRK12724 163 RLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTY-LEERVSVDSDLFS---GTGKNQRKVVFFVGPTGSGKTT 238 (432)
T ss_pred HHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-HHHhcccchhhhh---hcccCCCeEEEEECCCCCCHHH
Confidence 3445699999999999988765422 1 11122221111 0011222111111 1234567899999999999999
Q ss_pred HHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 187 LSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 187 Lalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+|.++|....+ ..+.+|.+++++ +|++.
T Consensus 239 taaKLA~~~~~------~~G~~V~Lit~D-t~R~a 266 (432)
T PRK12724 239 SIAKLAAKYFL------HMGKSVSLYTTD-NYRIA 266 (432)
T ss_pred HHHHHHHHHHH------hcCCeEEEeccc-chhhh
Confidence 99999986522 245688888876 35543
No 78
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.025 Score=57.06 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=55.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHH
Q psy13674 110 KMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSH 189 (315)
Q Consensus 110 ~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLal 189 (315)
+.....|+++.-+++|++.+.......-..+...+.+. -...|.+.. .+. +..|.++-|+|++|+|||+++.
T Consensus 168 ~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~~l~~~~--~~~-----~~~~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 168 KRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLEL-LANMIPVRV--EDI-----LKQGGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhCccc--ccc-----ccCCcEEEEECCCCCCHHHHHH
Confidence 44555689999888888877654422110111111110 001121111 111 2236799999999999999999
Q ss_pred HHHHHcc-CCccccCCCCCeEEEEeCC
Q psy13674 190 TLSITAQ-LPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 190 qla~~~~-lp~~~~gg~~~~vvyIDtE 215 (315)
.+|.... . ..+.+|.+||++
T Consensus 240 kLA~~~~~~------~~g~~V~li~~D 260 (424)
T PRK05703 240 KLAARYALL------YGKKKVALITLD 260 (424)
T ss_pred HHHHHHHHh------cCCCeEEEEECC
Confidence 9988764 2 145789999986
No 79
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0042 Score=57.75 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-+..|.++-|+||+|||||+|...+ |.. .....+-++||-+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRcl--N~L------E~~~~G~I~i~g~ 64 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCL--NGL------EEPDSGSITVDGE 64 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHH--HCC------cCCCCceEEECCE
Confidence 4678999999999999999998744 332 1356777888864
No 80
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0093 Score=59.73 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=77.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhHhcccc-chHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhH
Q psy13674 109 RKMSQIKGFSEAKVDKIKEACMKICDNSF-LTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187 (315)
Q Consensus 109 ~~L~~~~gis~~~v~ki~~~~~~~~~~~~-~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqL 187 (315)
.+....-|+++.-+..|++.+...+...- .+-.++...- ...++.-++.-+.+ .+..+.++-|+|++|+|||++
T Consensus 148 ~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~--~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 148 VKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWF--VPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTT 222 (407)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHH--HHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHH
Confidence 35566678999888888888866643211 1212221110 01111111111111 235689999999999999999
Q ss_pred HHHHHHHccCCccccCCCCCeEEEEeCCCCCChh--hHHHHHHHHHHH-------HHHHHHHHHHHh--hcc-cEEEEE
Q psy13674 188 SHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL--LNIIAIASLVTL-------VGSRLPMSFHIT--RED-LIVFFP 254 (315)
Q Consensus 188 alqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~--~Rl~~iaer~~l-------L~~~~~~L~~LA--~e~-iaVV~~ 254 (315)
+..+|..... .+.+|.+|++. +|++. ..+...++..++ -..+...|..+. ..+ +.+|++
T Consensus 223 ~akLA~~l~~-------~g~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 223 LVKLGWQLLK-------QNRTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred HHHHHHHHHH-------cCCeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 9999976531 35688999987 56653 144445554443 344555666665 345 666653
No 81
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.72 E-value=0.0036 Score=59.27 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.||+|||||+|...++--
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5788999999999999999999887653
No 82
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.69 E-value=0.0063 Score=56.29 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH----------HHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL----------VGSRL 238 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l----------L~~~~ 238 (315)
....+.-|+|.+|+|||+||.+++...... ..-+.++|++.....+...=+.++++.++. .....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~-----~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIK-----NRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHC-----CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccc-----ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778899999999999999999998773321 233688999988766554124456655432 45566
Q ss_pred HHHHHHhhcc--cEEEEEc
Q psy13674 239 PMSFHITRED--LIVFFPL 255 (315)
Q Consensus 239 ~~L~~LA~e~--iaVV~~~ 255 (315)
..|++...+. +.|++.+
T Consensus 92 ~~l~~~L~~~~~LlVlDdv 110 (287)
T PF00931_consen 92 DQLRELLKDKRCLLVLDDV 110 (287)
T ss_dssp HHHHHHHCCTSEEEEEEEE
T ss_pred ccchhhhccccceeeeeee
Confidence 6666665555 6666543
No 83
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.01 Score=54.82 Aligned_cols=41 Identities=24% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-+|.|.||-|.||.|+|||+|.--++.-. ..+.+.+|||.-
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~--------~~d~G~i~i~g~ 63 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLL--------KKDSGEITIDGL 63 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhc--------cccCceEEEeee
Confidence 58899999999999999999976555432 245677888854
No 84
>PRK05439 pantothenate kinase; Provisional
Probab=96.66 E-value=0.032 Score=54.23 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=57.9
Q ss_pred CCHHHHHHHhC----CCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhc-CCCCcccEEEEecCC
Q psy13674 106 TTRRKMSQIKG----FSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEF 180 (315)
Q Consensus 106 ~~~~~L~~~~g----is~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~ 180 (315)
.+..+|.++.| +|.++|..|.--+++++..-.....++. ..+..+|+ ..-..--|+-|+|+|
T Consensus 29 l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~-------------~~~~~fl~~~~~~~~~iIgIaG~~ 95 (311)
T PRK05439 29 LTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQ-------------AALEQFLGKNGQKVPFIIGIAGSV 95 (311)
T ss_pred CCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHH-------------HHHHHHhcccCCCCCEEEEEECCC
Confidence 45667777766 4778999888777766532111111111 11233442 022234588999999
Q ss_pred CCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 181 RTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 181 GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
|||||+||..++....- ...+.+|..|.+.+-+.+.
T Consensus 96 gsGKSTla~~L~~~l~~-----~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 96 AVGKSTTARLLQALLSR-----WPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred CCCHHHHHHHHHHHHHh-----hCCCCceEEEeccccccCH
Confidence 99999999988764321 0124567778877655443
No 85
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.63 E-value=0.0046 Score=50.33 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=45.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH-------HHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL-------VGSRLPMSF 242 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l-------L~~~~~~L~ 242 (315)
.+.+.-|+|++|+|||.++.+++....... .......++|++....-.+..-..++++.++. ...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEA--EIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHH--HHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhh--hccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 456788999999999999999988753100 00116788999876433444124456665543 455556666
Q ss_pred HHhhcc
Q psy13674 243 HITRED 248 (315)
Q Consensus 243 ~LA~e~ 248 (315)
+..+++
T Consensus 81 ~~l~~~ 86 (131)
T PF13401_consen 81 DALDRR 86 (131)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 666666
No 86
>PRK07758 hypothetical protein; Provisional
Probab=96.62 E-value=0.006 Score=49.42 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 83 NINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 83 gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+|+..-...|+++||+|++||...+..+|.++.|+.....++|.+.+.+
T Consensus 41 ~LSvRA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E 89 (95)
T PRK07758 41 LLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE 89 (95)
T ss_pred cccHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999988888776653
No 87
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.60 E-value=0.0038 Score=55.16 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=33.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++++.|.|+||||||++|.+++... +.+++||.|...++.+
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~----------~~~~~~iat~~~~~~e 41 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQS----------GLQVLYIATAQPFDDE 41 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHc----------CCCcEeCcCCCCChHH
Confidence 3578999999999999999998652 3468999998877765
No 88
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.043 Score=53.81 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=61.8
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhc----cccchHH----HHHHhhcCccceecCChhHHH---hhcCCCCcccEEEEecCC
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICD----NSFLTAA----QVVEKRKQVFKITTGSTELDK---ILGGGIESMAITEAFGEF 180 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~----~~~~tA~----ell~~~~~~~~isTG~~~LD~---lL~GGl~~g~ItEi~G~~ 180 (315)
.-..+++..-+++|++.+.+.+. ..+.+.. +.+.+. -...+..+. .+|- +-.. ....++-++|++
T Consensus 74 Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~-~~~~~~~~~~~--~~~~vi~~~G~~ 149 (336)
T PRK14974 74 LLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEA-LLEVLSVGD-LFDLIEEIKSK--GKPVVIVFVGVN 149 (336)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHH-HHHHhCCCc-chhhhhhhhcc--CCCeEEEEEcCC
Confidence 34468999999999998877652 1122221 222211 001122221 1221 1111 125799999999
Q ss_pred CCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh--hHHHHHHHHHH
Q psy13674 181 RTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL--LNIIAIASLVT 232 (315)
Q Consensus 181 GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~--~Rl~~iaer~~ 232 (315)
|+|||+++..+|.... ..+.+|+++++. +|+.. .++...+++++
T Consensus 150 GvGKTTtiakLA~~l~-------~~g~~V~li~~D-t~R~~a~eqL~~~a~~lg 195 (336)
T PRK14974 150 GTGKTTTIAKLAYYLK-------KNGFSVVIAAGD-TFRAGAIEQLEEHAERLG 195 (336)
T ss_pred CCCHHHHHHHHHHHHH-------HcCCeEEEecCC-cCcHHHHHHHHHHHHHcC
Confidence 9999999999987653 235688888765 56653 03444455444
No 89
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.54 E-value=0.018 Score=54.59 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=35.1
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
...++-++|++|+|||+.+..+|.... ..+.+|+.||+. .|++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-------~~g~~V~li~~D-~~r~~ 114 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-------KQGKSVLLAAGD-TFRAA 114 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-------hcCCEEEEEeCC-CCCHH
Confidence 357888889999999999999998764 245789999877 46553
No 90
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.018 Score=57.25 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhcc-ccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHH
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICDN-SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHT 190 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~~-~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalq 190 (315)
....|++..-++++++.+...... ....+.+.+. ..+...++.++.. .--+..|.++-|+||+|+|||+++..
T Consensus 83 L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~-~~~~~~g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 83 LFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQ-----SVLAANLPVLDSE-DALMERGGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred HHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHH-----HHHHhcchhhcCC-CccccCCcEEEEECCCCCCHHHHHHH
Confidence 344577777777777755332110 1111111111 1122223333221 11255688999999999999999999
Q ss_pred HHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 191 LSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 191 la~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
|+..+..- ....++.+|+++ +|+
T Consensus 157 LA~~~~~~-----~G~~~V~lit~D-~~R 179 (374)
T PRK14722 157 LAARCVMR-----FGASKVALLTTD-SYR 179 (374)
T ss_pred HHHHHHHh-----cCCCeEEEEecc-ccc
Confidence 99875420 112578888766 354
No 91
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.48 E-value=0.052 Score=54.91 Aligned_cols=119 Identities=23% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHhCCCCchHHHhcCC--HHHHHHHhCCCHHHHHHHHHHHHhHhc----cccchHHHHHHhhcCccceecCChhHH
Q psy13674 88 DIKKLKSVGLCTIKGVQMTT--RRKMSQIKGFSEAKVDKIKEACMKICD----NSFLTAAQVVEKRKQVFKITTGSTELD 161 (315)
Q Consensus 88 ~i~kL~~aGi~Tv~dll~~~--~~~L~~~~gis~~~v~ki~~~~~~~~~----~~~~tA~ell~~~~~~~~isTG~~~LD 161 (315)
.+.+|...+..|-+++-..- -....-..+++..-|.++++.+.+... ....+..+.+.+. =-++|-
T Consensus 11 ~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------v~~eL~ 82 (428)
T TIGR00959 11 IFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKI--------VHEELV 82 (428)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHH--------HHHHHH
Confidence 34556666665555443321 112223358888888899888876542 1122221211000 011233
Q ss_pred HhhcCC---CC----cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 162 KILGGG---IE----SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 162 ~lL~GG---l~----~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++|+++ +. .-.++-++|++|+|||++|..+|..... ..+.+|++||+. +|++.
T Consensus 83 ~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~------~~g~kV~lV~~D-~~R~~ 142 (428)
T TIGR00959 83 AILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKK------KQGKKVLLVACD-LYRPA 142 (428)
T ss_pred HHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHH------hCCCeEEEEecc-ccchH
Confidence 344321 11 1369999999999999999999987421 146789999988 47763
No 92
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.47 E-value=0.015 Score=55.64 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=42.2
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+......|.||++.+|-++ -+-.|.=.-|+|++|+|||+|+.+++.++.
T Consensus 46 R~~~~e~L~TGIr~ID~l~--pig~GQr~~If~~~G~GKTtLa~~i~~~i~ 94 (274)
T cd01133 46 QSTKTEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred hcCcCcccccCceeeeccC--CcccCCEEEEecCCCCChhHHHHHHHHHHH
Confidence 3344578999999999997 577788899999999999999999988765
No 93
>KOG0733|consensus
Probab=96.44 E-value=0.009 Score=62.67 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccc------c------------------CCCCCeEEEEeCCCCCChhh
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDET------R------------------GYTGGKVIYVDSENTLYPLL 222 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~------~------------------gg~~~~vvyIDtE~~F~~~~ 222 (315)
|+.+-.=..+.||||||||.||..+|-...+|--. . .+..--++|||--....|.
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pk- 297 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPK- 297 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccc-
Confidence 66665557799999999999999999988887221 1 1122347899987778887
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHhhc----c-cEEEEE-ccCCCCcccc
Q psy13674 223 NI---IAIASLVTLVGSRLPMSFHITRE----D-LIVFFP-LNADPKKPVG 264 (315)
Q Consensus 223 Rl---~~iaer~~lL~~~~~~L~~LA~e----~-iaVV~~-~~~~~~~Pal 264 (315)
|= .+|-+| ++++++..+..|..+ - |.||.. .-.|...|+|
T Consensus 298 Re~aqreMErR--iVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL 346 (802)
T KOG0733|consen 298 REEAQREMERR--IVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL 346 (802)
T ss_pred hhhHHHHHHHH--HHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHH
Confidence 52 234444 378888888877765 2 555542 2234444443
No 94
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.44 E-value=0.019 Score=58.08 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCCchHHHhcCCH--HHHHHHhCCCHHHHHHHHHHHHhHhc----cccchHHHHHHhhcCccceecCChhH
Q psy13674 87 ADIKKLKSVGLCTIKGVQMTTR--RKMSQIKGFSEAKVDKIKEACMKICD----NSFLTAAQVVEKRKQVFKITTGSTEL 160 (315)
Q Consensus 87 ~~i~kL~~aGi~Tv~dll~~~~--~~L~~~~gis~~~v~ki~~~~~~~~~----~~~~tA~ell~~~~~~~~isTG~~~L 160 (315)
..+.+|+..|.-|-+++-.+=. ....-..+++..-|.++++.+.+.+. ....+..+.+.+ .-.+.|
T Consensus 11 ~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~--------~v~~~L 82 (429)
T TIGR01425 11 SALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQH--------AVFKEL 82 (429)
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHH--------HHHHHH
Confidence 3456777777777666543321 12223358888888888888876541 122232222111 111233
Q ss_pred HHhhcCC---C----CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH
Q psy13674 161 DKILGGG---I----ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA 226 (315)
Q Consensus 161 D~lL~GG---l----~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ 226 (315)
=++|+++ + ....++-++|++|+|||++|..+|..... .+.+|+.|++. +|++. -..+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~-------~G~kV~lV~~D-~~R~a-A~eQ 146 (429)
T TIGR01425 83 CNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQR-------KGFKPCLVCAD-TFRAG-AFDQ 146 (429)
T ss_pred HHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEcCc-ccchh-HHHH
Confidence 4444332 1 12368899999999999999999986541 35688888876 57665 4433
No 95
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.42 E-value=0.0068 Score=48.49 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
.+...-|+|++|+|||+++..++.... ..+..++|++......
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~-------~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLE 60 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh-------cCCCCeEEEehhhhhh
Confidence 456788999999999999999987753 1357889998765443
No 96
>PRK04296 thymidine kinase; Provisional
Probab=96.41 E-value=0.0033 Score=56.17 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=31.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
.|+|+.++|++|+|||+++++++..+. +.+.+|+|+..
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~-------~~g~~v~i~k~ 38 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYE-------ERGMKVLVFKP 38 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHH-------HcCCeEEEEec
Confidence 378999999999999999999998874 24677887743
No 97
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=96.38 E-value=0.0069 Score=56.41 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~ 130 (315)
+||.+..+++|.++||.|+++|...++.+|.++.||+...|++|++.+.
T Consensus 9 pGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 9 SGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred CCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999999988764
No 98
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.37 E-value=0.034 Score=53.45 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=54.7
Q ss_pred CCHHHHHHHhC----CCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcC-CCCcccEEEEecCC
Q psy13674 106 TTRRKMSQIKG----FSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGG-GIESMAITEAFGEF 180 (315)
Q Consensus 106 ~~~~~L~~~~g----is~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~G-Gl~~g~ItEi~G~~ 180 (315)
.+..+|.++.| +|.++|..|.--+++++..- ..+...+... ...+++- ....-.|+-|+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~iy~pl~~~~~~~-~~~~~~~~~~------------~~~f~~~~~~~~p~IIGIaG~~ 71 (290)
T TIGR00554 5 LSEDEIKRLKGINEDLSLEEVATIYLPLSRLLNFY-ISSNLRRQAV------------LEQFLGTNGAKIPYIISIAGSV 71 (290)
T ss_pred CCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHH-HHHhhhHHHH------------HHHHHhcccCCCCEEEEEECCC
Confidence 34555655555 57789998888777766321 1222211110 1112211 11234689999999
Q ss_pred CCChhhHHHHHHHHcc-CCccccCCCCCeEEEEeCCCCCCh
Q psy13674 181 RTGKTQLSHTLSITAQ-LPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 181 GsGKTqLalqla~~~~-lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|||||+||..+..-.. .| .+++|..|...+-+.+
T Consensus 72 GSGKSTlar~L~~ll~~~~------~~g~V~vi~~D~f~~~ 106 (290)
T TIGR00554 72 AVGKSTTARILQALLSRWP------EHRKVELITTDGFLHP 106 (290)
T ss_pred CCCHHHHHHHHHHHHhhcC------CCCceEEEeccccccc
Confidence 9999999977654331 11 2456777777764444
No 99
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.11 Score=52.44 Aligned_cols=75 Identities=8% Similarity=0.002 Sum_probs=49.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH---HHHHHHH-------HHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA---IASLVTL-------VGSRLPM 240 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~---iaer~~l-------L~~~~~~ 240 (315)
..++-|+|++|+|||+++..||.... ..+.++.+|++. +|+.. -+.+ .++..++ -..+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-------~~GkkVglI~aD-t~Ria-AvEQLk~yae~lgipv~v~~d~~~L~~a 311 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-------GKKKTVGFITTD-HSRIG-TVQQLQDYVKTIGFEVIAVRDEAAMTRA 311 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-------HcCCcEEEEecC-CcchH-HHHHHHHHhhhcCCcEEecCCHHHHHHH
Confidence 35788999999999999999998653 245688899887 46543 3333 3333332 3445556
Q ss_pred HHHHhh--cc-cEEEEE
Q psy13674 241 SFHITR--ED-LIVFFP 254 (315)
Q Consensus 241 L~~LA~--e~-iaVV~~ 254 (315)
|..+.. .+ +.+|++
T Consensus 312 L~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 312 LTYFKEEARVDYILIDT 328 (436)
T ss_pred HHHHHhccCCCEEEEeC
Confidence 666654 46 666653
No 100
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.32 E-value=0.003 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|+|+||||||++|..|+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998753
No 101
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.25 E-value=0.0055 Score=53.08 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=32.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|+-+.|+||+|||+++..++.... ..+.++++||+.. +++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-------~~g~~v~~i~~D~-~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-------KKGKKVLLVAADT-YRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-------HCCCcEEEEEcCC-CCh
Confidence 677899999999999999988754 2467899999873 554
No 102
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.0058 Score=53.12 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=33.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.|.++-|.|.||+|||+++..++.... ..+.+++|||.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-------~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-------EAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCeEEEEcCc
Confidence 4688999999999999999999988653 135678999875
No 103
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.018 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.+.-|.|++|||||+|+.-++-
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 467899999999999999999998763
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.20 E-value=0.0085 Score=48.37 Aligned_cols=31 Identities=32% Similarity=0.313 Sum_probs=24.6
Q ss_pred EEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 175 EAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.|+||||+|||+++..+|... +..+++|+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~ 32 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL----------GFPFIEIDGS 32 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT----------TSEEEEEETT
T ss_pred EEECcCCCCeeHHHHHHHhhc----------cccccccccc
Confidence 589999999999999999874 3446666655
No 105
>KOG0744|consensus
Probab=96.16 E-value=0.013 Score=57.65 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=48.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITRED 248 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~lL~~~~~~L~~LA~e~ 248 (315)
....++.+.||||+|||.||..+|-...+-.. .....+..+=|.+-.-|+.. ..|.-.+++++...+..|+++.
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~-~~y~~~~liEinshsLFSKW-----FsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTN-DRYYKGQLIEINSHSLFSKW-----FSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeec-CccccceEEEEehhHHHHHH-----HhhhhhHHHHHHHHHHHHHhCC
Confidence 34668899999999999999999877654211 01122333444444334332 1111234788888999999887
Q ss_pred -cEEE
Q psy13674 249 -LIVF 252 (315)
Q Consensus 249 -iaVV 252 (315)
+.|.
T Consensus 249 ~~lVf 253 (423)
T KOG0744|consen 249 GNLVF 253 (423)
T ss_pred CcEEE
Confidence 4333
No 106
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.032 Score=50.90 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
-+.+|.+.-|+|++|||||+|...++..+. | ..+.+.|..-.+.
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p------~~G~v~Y~~r~~~ 71 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLT-P------DAGTVTYRMRDGQ 71 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccC-C------CCCeEEEEcCCCC
Confidence 367899999999999999999886665532 2 3567778775554
No 107
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.014 Score=55.50 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=30.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-+..|.+.-|+|++|||||+++.-+..-. ....+.||++-.
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~--------~pt~G~i~f~g~ 75 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLE--------EPTSGEILFEGK 75 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCc--------CCCCceEEEcCc
Confidence 57789999999999999999999776422 234556666644
No 108
>PF13173 AAA_14: AAA domain
Probab=96.09 E-value=0.0078 Score=49.94 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=32.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+.++-|.|+.|+|||+++.+++.... ...+++||+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCC
Confidence 46889999999999999999987653 357899999774
No 109
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.07 E-value=0.021 Score=58.01 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=41.6
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+++.-..++.||+..+|.++ -+..|..+-|+|++|+|||+|+.+++..+.
T Consensus 139 ~R~~i~e~l~TGi~~ID~l~--~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~ 188 (441)
T PRK09099 139 SRRMVEAPLPTGVRIVDGLM--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQ 188 (441)
T ss_pred hcCCcccccCCCceecccee--eecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33334578999999999996 466899999999999999999999986543
No 110
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.07 E-value=0.0047 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
|+.++|+||||||+|+.+++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 111
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.02 Score=57.19 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=69.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhHhccc----cchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChh
Q psy13674 110 KMSQIKGFSEAKVDKIKEACMKICDNS----FLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKT 185 (315)
Q Consensus 110 ~L~~~~gis~~~v~ki~~~~~~~~~~~----~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKT 185 (315)
++....|+++.-+++|++.+.+..... +....+.+... -...|... +... ....+.++-++|++|+|||
T Consensus 116 ~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~-l~~~i~~~----~~~~--~~~~~~vi~lvGptGvGKT 188 (388)
T PRK12723 116 DILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIY-IAKTIKCS----GSII--DNLKKRVFILVGPTGVGKT 188 (388)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-HHHHhhcc----Cccc--cCCCCeEEEEECCCCCCHH
Confidence 344456888888888888776554211 11111111110 00011100 0000 0123468999999999999
Q ss_pred hHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhH---HHHHHHHHHH-------HHHHHHHHHHHhhcc-cEEEEE
Q psy13674 186 QLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLN---IIAIASLVTL-------VGSRLPMSFHITRED-LIVFFP 254 (315)
Q Consensus 186 qLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~R---l~~iaer~~l-------L~~~~~~L~~LA~e~-iaVV~~ 254 (315)
+.+..+|....+-. +..+.+|.+|++. +|++. - +...++..++ ...+...|.++ ..+ +.+|++
T Consensus 189 TT~aKLA~~~~~~~---~~~g~~V~lit~D-t~R~a-a~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDT 262 (388)
T PRK12723 189 TTIAKLAAIYGINS---DDKSLNIKIITID-NYRIG-AKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDT 262 (388)
T ss_pred HHHHHHHHHHHhhh---ccCCCeEEEEecc-CccHH-HHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcC
Confidence 99999998765410 1235677777776 46654 3 3333443332 33444444444 345 666653
No 112
>KOG0734|consensus
Probab=96.06 E-value=0.0071 Score=62.65 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=28.0
Q ss_pred hhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 163 ILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 163 lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
.|||-+|.|- .++||||+|||.||..+|-.+..|
T Consensus 331 rLGGKLPKGV--LLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 331 RLGGKLPKGV--LLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred hccCcCCCce--EEeCCCCCchhHHHHHhhcccCCC
Confidence 4678888885 579999999999999888776665
No 113
>PF13479 AAA_24: AAA domain
Probab=96.06 E-value=0.0052 Score=55.75 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=25.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
-...|+|+||+|||+||..+ .+++|||+|+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~---------------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL---------------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC---------------CCeEEEEeCCC
Confidence 35679999999999998855 46788888865
No 114
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.06 E-value=0.033 Score=53.24 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=39.4
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++..-...+.||++.+|-++ -+-.|.=.-|+|++|+|||.|+++...+
T Consensus 45 ~R~~i~e~L~TGI~~ID~l~--pigrGQr~~Ifg~~g~GKt~L~l~~i~~ 92 (274)
T cd01132 45 PRKSVNEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIIN 92 (274)
T ss_pred hcCCcccccccCCEEeeccC--CcccCCEEEeeCCCCCCccHHHHHHHHH
Confidence 44445678999999999997 5677888999999999999998775443
No 115
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.99 E-value=0.03 Score=57.14 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=41.5
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++..-...+.||+..+|-++ -+-.|.=.-|+|++|+|||+|+..++.+..
T Consensus 120 ~R~~~~~~l~TGiraID~l~--pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~ 169 (463)
T PRK09280 120 ELSTKTEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIQELINNIA 169 (463)
T ss_pred HhCCccceeccCCeeecccC--CcccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 33345578999999999998 566788899999999999999999877764
No 116
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=95.97 E-value=0.076 Score=53.51 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=37.2
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIA 226 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ 226 (315)
..|....|=|.||+|||.|++.+.-... ..+.++||+|- ..++ ++.+
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~--------~~~~v~YISTR--Vd~d-~vy~ 54 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNSLK--------DHGNVMYISTR--VDQD-TVYE 54 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHHHh--------ccCCeEEEEec--cCHH-HHHH
Confidence 4688899999999999999999976542 56788999988 3555 5554
No 117
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.96 E-value=0.034 Score=56.63 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=42.7
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+++.-...|.||++.+|-++ -+-.|.=.-|+|++|+|||.|+.+++.++.
T Consensus 114 ~R~~i~e~L~TGIr~ID~l~--pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~ 163 (449)
T TIGR03305 114 RRSSKSEVFETGIKAIDVLV--PLERGGKAGLFGGAGVGKTVLLTEMIHNMV 163 (449)
T ss_pred hcccCCcccccCceeecccc--ccccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 44445688999999999998 566788899999999999999999988853
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.95 E-value=0.0094 Score=53.96 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=30.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...+...-|+|++|+|||.|+..++.... ..+..++||++.
T Consensus 39 ~~~~~~~~l~G~~G~GKT~La~ai~~~~~-------~~~~~~~~i~~~ 79 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLLQALVADAS-------YGGRNARYLDAA 79 (227)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHH-------hCCCcEEEEehH
Confidence 34556788999999999999998887652 135567777765
No 119
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.95 E-value=0.031 Score=50.46 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=47.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhH---HHHHHHHHHH----------HHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLN---IIAIASLVTL----------VGSRL 238 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~R---l~~iaer~~l----------L~~~~ 238 (315)
.+.-++||+|+|||+.+..+|..... .+.++..|++. +|+.. - |...++.+++ -..++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~-------~~~~v~lis~D-~~R~g-a~eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL-------KGKKVALISAD-TYRIG-AVEQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEES-TSSTH-HHHHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh-------ccccceeecCC-CCCcc-HHHHHHHHHHHhccccchhhcchhhHHHH
Confidence 46789999999999999999988764 37788888875 57665 3 3444555543 12233
Q ss_pred -HHHHHHhhc-c-cEEEEE
Q psy13674 239 -PMSFHITRE-D-LIVFFP 254 (315)
Q Consensus 239 -~~L~~LA~e-~-iaVV~~ 254 (315)
..|.++..+ + +.+|++
T Consensus 73 ~~~l~~~~~~~~D~vlIDT 91 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDT 91 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHhhcCCCEEEEec
Confidence 355555443 5 777765
No 120
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.94 E-value=0.019 Score=58.36 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=41.7
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++..-...+.||++.+|-++ -+..|..+-|+|++|+|||+|+.+++...
T Consensus 134 ~R~~~~~~l~TGir~ID~l~--~i~~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 134 SRARVGEPLDLGVRALNTFL--TCCRGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred HcCCcccccccceEEEeeee--EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44445678999999999998 67889999999999999999998887653
No 121
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.92 E-value=0.024 Score=57.68 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=38.8
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
.-...+.||++.||.++ -+..|..+-|+|++|+|||+|+..++.
T Consensus 147 ~i~~~l~TGi~aID~l~--~I~~GqrigI~G~sG~GKSTLl~~I~g 190 (451)
T PRK05688 147 PISEPLDVGIRSINGLL--TVGRGQRLGLFAGTGVGKSVLLGMMTR 190 (451)
T ss_pred cccCCcccceeeecceE--EecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999996 688899999999999999999988764
No 122
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.92 E-value=0.024 Score=57.52 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=41.2
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+++.-...+.||++.+|.++ -+..|..+-|+|++|+|||+|+..++...
T Consensus 138 ~R~~i~~~l~TGi~vid~l~--~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 138 SRRLIETPLSLGVRVIDGLL--TCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred HccccCCCCcCCcceeeeeE--EecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 33445678999999999995 58889999999999999999988887554
No 123
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.86 E-value=0.011 Score=51.48 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.7
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|.++-|+|++|||||+++..++.... ..+..++|+|.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~-------~~~~~~~~~~~d 44 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK-------LKYSNVIYLDGD 44 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH-------HcCCcEEEEecH
Confidence 5678999999999999999999887653 134567888754
No 124
>PRK09183 transposase/IS protein; Provisional
Probab=95.84 E-value=0.0087 Score=56.24 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+..|..+-|+||+|+|||.|+..++..+.. .+.+|.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHH
Confidence 567888899999999999999999766431 45788898855
No 125
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.11 Score=54.29 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+..|.++-|+|++|+|||+++..|+..+.. .+.+.++.+|++.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~-----~~~gkkVaLIdtD 389 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAA-----QHAPRDVALVTTD 389 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCCceEEEecc
Confidence 456889999999999999999999887643 1234678888875
No 126
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.83 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.2
Q ss_pred EEEecCCCCChhhHHHHHHHHccC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~l 197 (315)
..++||||+|||+||.-+|.....
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT-
T ss_pred EEEECCCccchhHHHHHHHhccCC
Confidence 458999999999999999887543
No 127
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.82 E-value=0.024 Score=57.61 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=40.7
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++..-...+.||+..||.++ -+..|..+-|+|++|+|||+|...++..
T Consensus 138 ~R~~i~e~l~TGi~aID~ll--~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 138 SRRPITEPLDVGVRAINAML--TVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred hcCCCCCcccccceeecceE--EEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34444678999999999997 6778999999999999999999888754
No 128
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.81 E-value=0.041 Score=56.18 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=41.5
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++..-...+.||+..+|-++ -+-.|.=.-|+|++|+|||.|...++.+..
T Consensus 119 ~R~~~~e~l~TGiraID~l~--pig~GQr~~If~~~G~GKt~L~~~~~~~~~ 168 (461)
T TIGR01039 119 EQSTKVEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIQELINNIA 168 (461)
T ss_pred HcCCcccccccCceeecccC--CcccCCEEEeecCCCCChHHHHHHHHHHHH
Confidence 44445678999999999998 566788899999999999999999877654
No 129
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.034 Score=56.66 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=39.4
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..-...+.||++.+|-++ =+..|..+-|+|++|+|||+|...++..
T Consensus 152 R~~i~e~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 152 RTPIEHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred hcccccchhccceeeeecc--cccCCcEEEEECCCCCCccHHHHHHhCC
Confidence 3334468999999999997 5788999999999999999998777643
No 130
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.80 E-value=0.01 Score=53.10 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=30.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.+...-|+|++|+|||.|+..++..+.- .+..++|+++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~-------~~~~~~~i~~~~ 76 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE-------RGKSAIYLPLAE 76 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEeHHH
Confidence 3567889999999999999999876531 345788888653
No 131
>PRK08233 hypothetical protein; Provisional
Probab=95.78 E-value=0.013 Score=50.53 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC-CCChhhHHHHHHHH---HH--HHHHHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN-TLYPLLNIIAIASL---VT--LVGSRLPMSFHI 244 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~-~F~~~~Rl~~iaer---~~--lL~~~~~~L~~L 244 (315)
+.|+-|.|+||||||+||..++.... ...++++|... ...+. .+...... +. .+..+...|+++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~---------~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK---------NSKALYFDRYDFDNCPE-DICKWIDKGANYSEWVLTPLIKDIQEL 72 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC---------CCceEEECCEEcccCch-hhhhhhhccCChhhhhhHHHHHHHHHH
Confidence 46888999999999999999987531 22556666442 11121 22221110 10 145556667666
Q ss_pred hhcc-cEEE-EEccCCCCcccccccccccccEEEEEE
Q psy13674 245 TRED-LIVF-FPLNADPKKPVGGNIMAHASTTRISLR 279 (315)
Q Consensus 245 A~e~-iaVV-~~~~~~~~~PalG~~wah~~~tRl~L~ 279 (315)
...+ +.+| +.+......+ -+.+.++..++|.
T Consensus 73 ~~~~~~~~vivd~~~~~~~~----~~~~~~d~~i~l~ 105 (182)
T PRK08233 73 IAKSNVDYIIVDYPFAYLNS----EMRQFIDVTIFID 105 (182)
T ss_pred HcCCCceEEEEeeehhhccH----HHHHHcCEEEEEc
Confidence 6555 4333 2221110111 2445567777776
No 132
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.77 E-value=0.033 Score=52.55 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC--CCChhhHHHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN--TLYPLLNIIAIASLVT 232 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~--~F~~~~Rl~~iaer~~ 232 (315)
-++.|+|+-|.|++|+|||+|...+.-- + .+..+-++|+.++ .++.+ ++.++-+++|
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l------~P~~GeI~i~G~~i~~ls~~-~~~~ir~r~G 88 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGL--L------RPDKGEILIDGEDIPQLSEE-ELYEIRKRMG 88 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhcc--C------CCCCCeEEEcCcchhccCHH-HHHHHHhhee
Confidence 5789999999999999999998877542 2 2456677888774 34555 5666655543
No 133
>PRK06893 DNA replication initiation factor; Validated
Probab=95.76 E-value=0.0064 Score=55.77 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...-|+|+||+|||.|+..+|..+.. .+.+++|++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~-------~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL-------NQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEeeHH
Confidence 35678999999999999999887542 35688999986
No 134
>PF13245 AAA_19: Part of AAA domain
Probab=95.68 E-value=0.017 Score=44.50 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=30.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+..|.|+||+|||+++.+++....-.. +..+.+++++...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~---~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAAR---ADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh---cCCCCeEEEECCC
Confidence 55778899999999999998877764100 1126788888644
No 135
>PHA00729 NTP-binding motif containing protein
Probab=95.65 E-value=0.023 Score=52.86 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc--CCc---cc-cCCCCCeEEEEeCC
Q psy13674 160 LDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ--LPD---ET-RGYTGGKVIYVDSE 215 (315)
Q Consensus 160 LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~--lp~---~~-~gg~~~~vvyIDtE 215 (315)
+..+..+|+. .+.|+|+||+|||+||..++..+. ++. +. ....+..++|+|.+
T Consensus 9 ~~~l~~~~f~---nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~ 67 (226)
T PHA00729 9 VSAYNNNGFV---SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELP 67 (226)
T ss_pred HHHHhcCCeE---EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHH
Confidence 3445556664 467999999999999999987642 110 00 00135678888876
No 136
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.011 Score=55.62 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=47.7
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITRED- 248 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~lL~~~~~~L~~LA~e~- 248 (315)
.+.-.-++|+||+|||.|+..++..+. ..+..|+|+.+-. =+.++...+.- ...-..|.+...++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-------~~g~sv~f~~~~e------l~~~Lk~~~~~-~~~~~~l~~~l~~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-------KAGISVLFITAPD------LLSKLKAAFDE-GRLEEKLLRELKKVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-------HcCCeEEEEEHHH------HHHHHHHHHhc-CchHHHHHHHhhcCC
Confidence 566688999999999999999988875 2578899988653 23333333211 12334455544556
Q ss_pred cEEEEEcc
Q psy13674 249 LIVFFPLN 256 (315)
Q Consensus 249 iaVV~~~~ 256 (315)
+.||+.+.
T Consensus 170 lLIiDDlG 177 (254)
T COG1484 170 LLIIDDIG 177 (254)
T ss_pred EEEEeccc
Confidence 77776443
No 137
>PTZ00202 tuzin; Provisional
Probab=95.54 E-value=0.072 Score=54.63 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=52.6
Q ss_pred hhHHHhhcC-CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHHH---
Q psy13674 158 TELDKILGG-GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTL--- 233 (315)
Q Consensus 158 ~~LD~lL~G-Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~l--- 233 (315)
..|+.+|.+ ......|+-|.|++|+|||+||..+.... ..-++|+|.. ++ .+ =+..++..+|+
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----------~~~qL~vNpr-g~-eE-lLr~LL~ALGV~p~ 338 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----------GMPAVFVDVR-GT-ED-TLRSVVKALGVPNV 338 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----------CceEEEECCC-CH-HH-HHHHHHHHcCCCCc
Confidence 457777753 22233599999999999999999987532 2336677766 32 33 56677776653
Q ss_pred ------HHHHHHHHHHHhhc
Q psy13674 234 ------VGSRLPMSFHITRE 247 (315)
Q Consensus 234 ------L~~~~~~L~~LA~e 247 (315)
+..+-..|.++..+
T Consensus 339 ~~k~dLLrqIqeaLl~~~~e 358 (550)
T PTZ00202 339 EACGDLLDFISEACRRAKKM 358 (550)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 67777777777776
No 138
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.54 E-value=0.039 Score=48.56 Aligned_cols=38 Identities=26% Similarity=0.196 Sum_probs=30.0
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
|.++-|.|.||+|||+||..+..... ..+.++.|+|..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~-------~~g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF-------ARGIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH-------HTTS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-------HcCCcEEEecCc
Confidence 67888999999999999999977653 256889999854
No 139
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.51 E-value=0.016 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++.|.||||+|||++...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 89999999999999988887766
No 140
>PRK05642 DNA replication initiation factor; Validated
Probab=95.51 E-value=0.0094 Score=54.99 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=29.6
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...-|+|++|+|||.|+..+|..+. ..+.+|+|++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~-------~~~~~v~y~~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE-------QRGEPAVYLPLAE 83 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-------hCCCcEEEeeHHH
Confidence 3467899999999999887776543 1357899999874
No 141
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.056 Score=50.51 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.9
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
..|+.+.||-+-||+|||||+|...+=.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 5899999999999999999999876644
No 142
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.45 E-value=0.058 Score=55.10 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
.+..-...+.||++.+|.++ -+-.|.=.-|+|.+|+|||+|+.+++..+..
T Consensus 117 ~R~~~~~~l~TGi~~ID~l~--pig~GQR~gIfgg~G~GKs~L~~~ia~~~~a 167 (458)
T TIGR01041 117 AREYPEEFIQTGISAIDGMN--TLVRGQKLPIFSGSGLPHNELAAQIARQATV 167 (458)
T ss_pred hcCCCCCcCCCCeEEEEccC--ccccCCEEEeeCCCCCCHHHHHHHHHHhhcc
Confidence 34445678999999999998 4667888889999999999999998886643
No 143
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.44 E-value=0.07 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+.-|+|++|+|||+++..++...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4478999999999999999997664
No 144
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.42 E-value=0.059 Score=55.05 Aligned_cols=51 Identities=25% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+++..-...+.||++.+|-++ -+-.|.=.-|+|++|+|||+|...++.+..
T Consensus 118 ~~R~~~~e~l~TGir~ID~l~--pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~ 168 (461)
T PRK12597 118 AEQDTSTEILETGIKVIDLLC--PIAKGGKTGLFGGAGVGKTVLMMELIFNIS 168 (461)
T ss_pred hhcCCcCcceecCCeeecccC--ccccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 344445678999999999998 566788899999999999999988887765
No 145
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.059 Score=50.78 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=29.1
Q ss_pred cCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 155 TGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 155 TG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-|...|+.+ .=-|+.|+.+-|.|++|+|||+|...+.-
T Consensus 15 ~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 15 GGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 344444443 12578999999999999999999998765
No 146
>PRK05182 DNA-directed RNA polymerase subunit alpha; Provisional
Probab=95.38 E-value=0.032 Score=54.16 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=49.4
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
...||+.| +|+.+....|+++||+|+.||+..+..+|.++.++.....++|.+.+.+
T Consensus 247 l~~~I~~L---~LS~R~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~L~~ 303 (310)
T PRK05182 247 LLRPIEEL---ELSVRSYNCLKRAGINTIGDLVQRTEEELLKTRNLGKKSLEEIKEKLAE 303 (310)
T ss_pred ccccHHHh---ccchHHHHHHHHcCCcCHHHHHhCCHHHHhcCCCCChhhHHHHHHHHHH
Confidence 34556666 5999999999999999999999999999999999999888888776654
No 147
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.34 E-value=0.091 Score=53.33 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=40.6
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++..-...+.||+..||.++ -+..|..+-|+|++|+|||+|...++...
T Consensus 133 ~R~~i~~~l~tgi~aid~l~--~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 133 KRGLIDEVFSVGVKSIDGLL--TCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred HcCCcceeccchhHHhhhcc--eecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33344567889999999985 67789999999999999999998887654
No 148
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.34 E-value=0.019 Score=56.74 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
--+..|++.-+.||+|||||++..-+|=-. ...++-|+|+-+
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--------~p~~G~I~l~G~ 67 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--------QPSSGEILLDGE 67 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEECCE
Confidence 467899999999999999999998876432 245566666655
No 149
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.32 E-value=0.032 Score=46.33 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.4
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
..|+|+||+|||.|+..+|... +..+++|........+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~ 39 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEE 39 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccc
Confidence 3589999999999999998764 3456666655545444
No 150
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.31 E-value=0.022 Score=52.49 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...-|+||+|+|||.|+..++..+. ..+.+++|+..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS-------QRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-------hCCCeEEEEEHHH
Confidence 4577999999999999998887654 1357899988764
No 151
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.29 E-value=0.0096 Score=54.51 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..-|+|++|+|||.|...+|..+.- ...+.+|+|++.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~-----~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQK-----QHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-----HCTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh-----ccccccceeecHH
Confidence 3568999999999999888776541 1357799999977
No 152
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.28 E-value=0.033 Score=49.79 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=30.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
.+.++-|.|++|||||+|+..++... ....+.+|+.+.-+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l---------~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL---------GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh---------CCCceEEEeCCccc
Confidence 46789999999999999999988753 13467777776543
No 153
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.023 Score=55.84 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC--CCCChh
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE--NTLYPL 221 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE--~~F~~~ 221 (315)
+..|+..-|.||+|||||+|..-+|=- ....++-|||+-+ ..++|+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGL--------e~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGL--------EEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECCCCChh
Confidence 677899999999999999998877631 1245667777755 234444
No 154
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.19 E-value=0.012 Score=48.50 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+++|.++-|.|++|+|||+|...++-.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEccCCCccccceeeeccc
Confidence 578999999999999999999876543
No 155
>PRK05922 type III secretion system ATPase; Validated
Probab=95.17 E-value=0.073 Score=54.02 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=38.6
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.-...+.||++.+|.++ -+..|..+-|+|++|+|||+|...++..
T Consensus 136 ~i~e~l~TGIr~ID~ll--~I~~GqrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 136 PIQEIFPTGIKAIDAFL--TLGKGQRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred CcceecCCCceeecceE--EEcCCcEEEEECCCCCChHHHHHHHhcc
Confidence 34567999999999986 6778999999999999999998877654
No 156
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.13 E-value=0.067 Score=53.85 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=39.4
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++..-...+.||+..+|.++ -+..|..+-|+|++|+|||+|...++..
T Consensus 113 ~R~~~~~~~~tGi~~id~l~--~i~~Gq~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 113 KRAPIDEPLDVGVRAINGLL--TVGRGQRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred hccCcceEeeeeEEeecceE--EEecCcEEEEECCCCCCHHHHHHHHhcC
Confidence 33344567899999999996 6778999999999999999998766643
No 157
>PRK06762 hypothetical protein; Provisional
Probab=95.13 E-value=0.027 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++-|+|.||||||++|..++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999865
No 158
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=95.12 E-value=0.062 Score=45.19 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHH-----HHHHHhCCCHHHHHHHHHHHHh
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRR-----KMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~-----~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+||++....+|+++||.|+.||+...+. +|++.+|++...+.+....+--
T Consensus 1 pgi~~~~~~~L~~~GI~t~~~Ll~~~~~~~~r~~La~~~~i~~~~l~~w~~~AdL 55 (122)
T PF14229_consen 1 PGIGPKEAAKLKAAGIKTTGDLLEAGDTPLGRKALAKKLGISERNLLKWVNQADL 55 (122)
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHHHhHHHh
Confidence 5899999999999999999999998643 4777889999999888766543
No 159
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=95.10 E-value=0.076 Score=54.79 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=40.5
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+++..-...+.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+
T Consensus 136 ~~R~~i~~pl~TGi~aID~l~--pigrGQr~~I~g~~g~GKt~Lal~~i~~ 184 (501)
T TIGR00962 136 MERKSVHEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAVAIDTIIN 184 (501)
T ss_pred hhcCCcCceeccCCceeeccC--CcccCCEEEeecCCCCCccHHHHHHHHh
Confidence 444445678999999999998 5667888999999999999998876554
No 160
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.07 E-value=0.042 Score=54.48 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=46.1
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.-...+.||+..||.++ -+-.|.-.-|+|++|+|||.|+.+++.+. ...-+||+-.-
T Consensus 136 ~~~~pL~TGirvID~l~--Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~---------~~dvvVyv~iG 192 (369)
T cd01134 136 PPNEPLLTGQRVLDTLF--PVVKGGTAAIPGPFGCGKTVIQQSLSKYS---------NSDIVIYVGCG 192 (369)
T ss_pred CCCCchhccchhhhccc--cccCCCEEEEECCCCCChHHHHHHHHhCC---------CCCEEEEEEeC
Confidence 34577999999999998 56678889999999999999999988754 23457887764
No 161
>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins.
Probab=95.06 E-value=0.045 Score=52.83 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=48.2
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
.||+.|. |+.+...-|+++||+|+.||+..+..+|.++.++.....++|.+.+.+
T Consensus 235 ~~I~~L~---LSvR~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~l~~ 289 (297)
T TIGR02027 235 IKIEELD---LSVRSYNCLKRAGIHTLGELVSKSEEELLKIKNFGKKSLTEIKEKLAE 289 (297)
T ss_pred ccHHHhC---ccHHHHhHHHHcCCcCHHHHHhCCHHHHhhCCCCChhhHHHHHHHHHH
Confidence 4555554 999999999999999999999999999999999999888888776654
No 162
>PF12846 AAA_10: AAA-like domain
Probab=95.05 E-value=0.02 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
+.|+|.+|+|||+++..++....
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999998876654
No 163
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.04 E-value=0.14 Score=44.91 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.4
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|.++-++|.+|+|||+++..++.... ..+..++++|.+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~-------~~~~~~~~l~~d 55 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE-------SKGYRVYVLDGD 55 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCcEEEECCh
Confidence 5678999999999999999999987642 123467888765
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.03 E-value=0.023 Score=50.51 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=28.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.-.-|+|++|+|||.||..++..+. ..+..|+|+++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-------~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-------RKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-------HTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-------cCCcceeEeecC
Confidence 34578999999999999999987764 256789999865
No 165
>PRK08118 topology modulation protein; Reviewed
Probab=95.01 E-value=0.021 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.0
Q ss_pred EEEecCCCCChhhHHHHHHHHccCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp 198 (315)
+-|+|+||||||+||..++....+|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999887655
No 166
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.00 E-value=0.019 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.3
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.|.++-|.|++|||||+|+..++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999988754
No 167
>PRK06820 type III secretion system ATPase; Validated
Probab=94.96 E-value=0.076 Score=53.98 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=38.9
Q ss_pred hcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.-...+.||+..||.++ =+..|..+-|+|++|+|||+|+..++..
T Consensus 141 ~~~~~~l~TGi~aID~l~--~i~~Gqri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 141 QPIEQMLTTGIRAIDGIL--SCGEGQRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CCchhhccCCCceecceE--EecCCCEEEEECCCCCChHHHHHHHhcc
Confidence 334577899999999997 5778999999999999999998777654
No 168
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.96 E-value=0.029 Score=50.02 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988754
No 169
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.96 E-value=0.04 Score=50.73 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=35.1
Q ss_pred cCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 155 TGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 155 TG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
||++.+|-++ -+-.|.=.-|+|++|+|||.|+.+++.+..
T Consensus 1 TGir~ID~l~--Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 1 TGIRAIDLLF--PIGRGQRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp -SHHHHHHHS--CEETTSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCceecccc--ccccCCEEEEEcCcccccchhhHHHHhccc
Confidence 8999999997 566788899999999999999999999874
No 170
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.95 E-value=0.07 Score=54.83 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHH
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalql 191 (315)
.-..|++..-+++|++.+.+... ...+.+.+...- ...+. .+...+.. +..|.|+-|+|++|+|||+.+..|
T Consensus 205 Ll~~dv~~~la~~l~~~l~~~~~--~~~~~~~l~~~l-~~~l~-~~~~~~~~----~~~g~Vi~LvGpnGvGKTTTiaKL 276 (484)
T PRK06995 205 LLAAGFSAQLVRMLVDNLPEGDD--AEAALDWVQSAL-AKNLP-VLDSEDAL----LDRGGVFALMGPTGVGKTTTTAKL 276 (484)
T ss_pred HHHCCCCHHHHHHHHHHHHhhhc--hhHHHHHHHHHH-HHHHh-hccCcccc----ccCCcEEEEECCCCccHHHHHHHH
Confidence 34458888888888887654321 112222222110 00010 01111111 234689999999999999999999
Q ss_pred HHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 192 a~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|..... . ....+|.+|+++ +|+.
T Consensus 277 A~~~~~-~----~G~~kV~LI~~D-t~Ri 299 (484)
T PRK06995 277 AARCVM-R----HGASKVALLTTD-SYRI 299 (484)
T ss_pred HHHHHH-h----cCCCeEEEEeCC-ccch
Confidence 976532 0 122478888776 3543
No 171
>PRK14973 DNA topoisomerase I; Provisional
Probab=94.94 E-value=0.064 Score=59.16 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=52.5
Q ss_pred HHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH-hHhcccc
Q psy13674 78 ILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM-KICDNSF 137 (315)
Q Consensus 78 ~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~-~~~~~~~ 137 (315)
.|..+||++...++|-++||.+.+||..++|.+|+..+||+++.+.++...|. .++-+..
T Consensus 804 ~~~~~gv~~~~~~~~~~~G~~~~~d~~~a~p~~La~~~g~~~~~~~~~~~~~~~~~~~~~~ 864 (936)
T PRK14973 804 RLKEIGVPAVSLKKYQEAGFDTPEDFCSVHPAYLALKTGISPETICRHAKLVCEKLGRPVP 864 (936)
T ss_pred hhcccCCCHHHHHHHHHhcCCCHHHHHhcCHHHHhcCCCCChhhHHHHHHHHHHHhcCCCc
Confidence 44447999999999999999999999999999999999999999999988877 5554433
No 172
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.93 E-value=0.025 Score=50.06 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=29.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
|.-|+|.||||||+||..++.... ..+.++..|+.++-+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~-------~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR-------VNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-------HcCCCEEEEehhhccc
Confidence 456899999999999999987643 1234677777775443
No 173
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=94.92 E-value=0.025 Score=55.92 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcc---cEEEEEccCC--CCcccccccccccccEEEEEEecCCC------------eEEEEEEECCC
Q psy13674 234 VGSRLPMSFHITRED---LIVFFPLNAD--PKKPVGGNIMAHASTTRISLRKGRGE------------TRIAKIYDSPD 295 (315)
Q Consensus 234 L~~~~~~L~~LA~e~---iaVV~~~~~~--~~~PalG~~wah~~~tRl~L~k~~g~------------~R~~~I~KSp~ 295 (315)
+-+|+..|+.|.++| +++++++-.. +..+.+-.-|.|++++.|-|.-..++ .-.++|.|-|.
T Consensus 225 ll~FL~~LR~LlR~~~s~~v~~iTlP~~L~~~~~~~~~~l~~l~D~vi~Le~F~~~~~~~~~~~~~~~~Gll~v~KLp~ 303 (363)
T PF05625_consen 225 LLRFLHSLRALLRKYSSNAVAMITLPSHLYPRSPSLVRRLEHLADGVIELESFAGSMEKETNPPFKDYHGLLHVHKLPR 303 (363)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEEEEGTTS---HHHHHHHHHHSSEEEEEEE--HHHHHTTT-GGG---EEEEEEE-TT
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEECHHHhccChHHHHHHHHhCCEEEEeecCCCccccccCCcCcCCcEEEEEEEecc
Confidence 678999999999955 4444444322 11455666789999999999853221 46678888775
No 174
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.92 E-value=0.023 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHccC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
|+-|+|+||||||++|..++...-+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999987543
No 175
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.91 E-value=0.029 Score=50.24 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.|++|+|||+|..-++-.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999988653
No 176
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.90 E-value=0.099 Score=53.07 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=37.0
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
...+.||+..+|.++ =+..|..+-|+|++|+|||+|...++..
T Consensus 139 ~~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 139 REPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred ccccccchhhhheee--eecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999996 5888999999999999999998766543
No 177
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.03 Score=50.82 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988653
No 178
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.86 E-value=0.22 Score=48.59 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=34.4
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASL 230 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer 230 (315)
.-|+|+||+|||.++..++....- .+.+-.++||++...-.+..-+.++++.
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~-----~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEE-----IAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----hcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 469999999999999999876531 1135678999876533333123344443
No 179
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.85 E-value=0.081 Score=54.74 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
|+++..-..|+||||||||.++..+|.....+.. ........|++..
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~--~~~~~~~~fl~v~ 258 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG--AETGDKSYFLNIK 258 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhccccc--cccCCceeEEecc
Confidence 5665555889999999999999999887654311 1123455666544
No 180
>PF05729 NACHT: NACHT domain
Probab=94.85 E-value=0.041 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
+.-|.|++|+|||+++..++....-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 5679999999999999999887653
No 181
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.85 E-value=0.09 Score=51.45 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=37.6
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.-...+.||+..||.++ -+..|..+-|+|++|+|||+|...++..
T Consensus 48 ~~~~~l~tGi~aiD~l~--~i~~Gqri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 48 PIDEVLPTGVRAIDGLL--TVGKGQRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cceeEcCCCcEEEeeee--EEcCCcEEEEECCCCCChHHHHHHHhCC
Confidence 34457889999999985 5778899999999999999997766644
No 182
>PRK14973 DNA topoisomerase I; Provisional
Probab=94.84 E-value=0.061 Score=59.36 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=48.7
Q ss_pred Hhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 79 LQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 79 L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
|.. .|+++.++++|..|||.|++||+..++.+|+..+||+..++.+++..+..
T Consensus 879 l~~vkg~ge~t~~~l~~ag~~~~e~l~~~d~~~la~~~~i~~k~~~~~~~~~~~ 932 (936)
T PRK14973 879 LLSVPGLGETTLEKLYLAGVYDGDLLVSADPKKLAKVTGIDEKKLRNLQAYAKK 932 (936)
T ss_pred hhhccCCCHHHHHHHHHcCCCCHHHhccCCHHHHhhhcCCCHHHHHHHHHHHhh
Confidence 444 69999999999999999999999999999999999999999999887754
No 183
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.83 E-value=0.032 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|+++-|.|++|+|||+|..-++-
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999987754
No 184
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=94.81 E-value=0.047 Score=56.30 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.++.-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.+++...++
T Consensus 118 ~~R~~v~epL~TGIkaID~l~--pigrGQR~~Ifg~~gtGKT~lal~~I~~ 166 (507)
T PRK07165 118 MTVKTLNEQLYTGIIAIDLLI--PIGKGQRELIIGDRQTGKTHIALNTIIN 166 (507)
T ss_pred hhhCCCCceeecCchhhhhcC--CcccCCEEEeecCCCCCccHHHHHHHHH
Confidence 344456688999999999998 5667888999999999999998766544
No 185
>KOG0733|consensus
Probab=94.80 E-value=0.084 Score=55.67 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=57.0
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCC-------cc---cc--------------CCCCCeEEEEe
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLP-------DE---TR--------------GYTGGKVIYVD 213 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp-------~~---~~--------------gg~~~~vvyID 213 (315)
+++-+.| |+.+-+=..+|||||||||.||..+|..+-++ +- |. ....--|+|+|
T Consensus 534 pd~~k~l--Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 534 PDLFKAL--GIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred HHHHHHh--CCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEec
Confidence 4555555 44444446789999999999999888765442 00 00 01123356666
Q ss_pred CCCCCChhhHHHHHHHH-HHHHHHHHHHHHHHhhcc-cEEEEE
Q psy13674 214 SENTLYPLLNIIAIASL-VTLVGSRLPMSFHITRED-LIVFFP 254 (315)
Q Consensus 214 tE~~F~~~~Rl~~iaer-~~lL~~~~~~L~~LA~e~-iaVV~~ 254 (315)
--..+.|. |=..-... -.++++++..|.-+-... |.|+..
T Consensus 612 EiDaL~p~-R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaA 653 (802)
T KOG0733|consen 612 EIDALVPR-RSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAA 653 (802)
T ss_pred chhhcCcc-cCCCCchhHHHHHHHHHHHhcccccccceEEEee
Confidence 55556554 42221110 123889999999887777 888853
No 186
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.79 E-value=0.035 Score=56.99 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=40.1
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||+||+....+
T Consensus 117 ~R~~v~epl~TGI~aID~l~--pigrGQR~~I~g~~g~GKt~Lal~~I~~ 164 (485)
T CHL00059 117 SRRSVYEPLQTGLIAIDSMI--PIGRGQRELIIGDRQTGKTAVATDTILN 164 (485)
T ss_pred hccCCCcccccCceeecccc--ccccCCEEEeecCCCCCHHHHHHHHHHh
Confidence 33445678999999999998 5667888999999999999999986655
No 187
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.79 E-value=0.047 Score=51.79 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=28.1
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..|+||||+|||+++..++....- .+....++|++...
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~-----~~~~~~~~~i~~~~ 76 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYG-----DPWENNFTEFNVAD 76 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC-----cccccceEEechhh
Confidence 569999999999999999877541 11234578888653
No 188
>PRK08149 ATP synthase SpaL; Validated
Probab=94.79 E-value=0.076 Score=53.78 Aligned_cols=45 Identities=22% Similarity=0.156 Sum_probs=38.5
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.-...+.||++.||.++ -+..|..+-|+|++|+|||+|...++..
T Consensus 130 ~i~e~l~tGi~aid~ll--~i~~Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 130 PIREPLITGVRAIDGLL--TCGVGQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CccccccCCcEEEeeee--eEecCCEEEEECCCCCChhHHHHHHhcC
Confidence 34567889999999996 6788999999999999999998877653
No 189
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.79 E-value=0.02 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred EEecCCCCChhhHHHHHHHHcc
Q psy13674 175 EAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~~~ 196 (315)
-|+|+||+|||.||..||..+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999886654
No 190
>PRK08181 transposase; Validated
Probab=94.78 E-value=0.024 Score=53.90 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=31.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.+.-.-|+|++|+|||.|+..++..+.- .+.+|+|+++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~ 143 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTT 143 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHH
Confidence 4556889999999999999999877642 46789998864
No 191
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.78 E-value=0.16 Score=49.17 Aligned_cols=92 Identities=15% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHHhhcC-CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH-HHHHHHHH----
Q psy13674 160 LDKILGG-GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII-AIASLVTL---- 233 (315)
Q Consensus 160 LD~lL~G-Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~-~iaer~~l---- 233 (315)
|.++|.- .-..---..|+|+++.|||++..+++....-..+ .++..-.|+|+.+-..=... |+- .|++.++.
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~-~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDER-RFYSAILEALGAPYRP 126 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChH-HHHHHHHHHhCcccCC
Confidence 5555542 1122234789999999999999999986632222 12223468999865332222 221 23332210
Q ss_pred --------------------------------------HHHHHHHHHHHhhcc-cEEEE
Q psy13674 234 --------------------------------------VGSRLPMSFHITRED-LIVFF 253 (315)
Q Consensus 234 --------------------------------------L~~~~~~L~~LA~e~-iaVV~ 253 (315)
-..+++.||.|+.+. +.+|.
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEE
Confidence 467899999999999 88884
No 192
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.75 E-value=0.1 Score=52.70 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=38.9
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..-...+.||+..+|-++ -+..|..+-|+|++|+|||+|...++..
T Consensus 117 R~~i~~~l~tGi~aiD~~~--~i~~Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 117 RARVGEPLDTGVRVIDTFL--PLCRGQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred ccCcccccCCccEEEeeec--cccCCcEEEEECCCCCChHHHHHHHhCC
Confidence 3344578999999999766 6788999999999999999998766654
No 193
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.74 E-value=0.029 Score=48.97 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.1
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+|.|+-+.|+||||||+++..++...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998764
No 194
>KOG0736|consensus
Probab=94.73 E-value=0.038 Score=59.37 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=57.0
Q ss_pred HhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCC-------cc---ccC--------------CCCCeEEEEeCCCC
Q psy13674 162 KILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLP-------DE---TRG--------------YTGGKVIYVDSENT 217 (315)
Q Consensus 162 ~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp-------~~---~~g--------------g~~~~vvyIDtE~~ 217 (315)
++++-|+...+=+.+|||||+|||.+|..+|-++.+. +- |.| ...-=|+|+|--.+
T Consensus 696 eLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 696 ELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred hhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 3566799988888999999999999999999988763 10 011 11233667776666
Q ss_pred CChhhHHH-----HHHHHHHHHHHHHHHHHHHhhcc---cEEEE
Q psy13674 218 LYPLLNII-----AIASLVTLVGSRLPMSFHITRED---LIVFF 253 (315)
Q Consensus 218 F~~~~Rl~-----~iaer~~lL~~~~~~L~~LA~e~---iaVV~ 253 (315)
+.|. |=. -..+| ++.+++..|..|.+.. |.|+.
T Consensus 776 lAP~-RG~sGDSGGVMDR--VVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 776 LAPN-RGRSGDSGGVMDR--VVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred cCcc-CCCCCCccccHHH--HHHHHHHHhhcccCCCCCceEEEe
Confidence 6665 411 01122 1666777777777522 66663
No 195
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.73 E-value=0.064 Score=54.16 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=40.1
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++..-...+.||+..||.++ -+..|..+-|+|++|+|||+|+..++...
T Consensus 121 ~R~~i~~~l~tG~~~id~l~--~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 121 SRQPIDQPLPTGVRAIDGLL--TCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred HccCcccccCCCceeehhhc--cccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 33344567999999999997 56789999999999999999987776543
No 196
>KOG2373|consensus
Probab=94.73 E-value=0.03 Score=55.60 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=33.3
Q ss_pred ChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 157 STELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 157 ~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+.|+++| +|..+|.+|.+.||.|+|||+|.-.++....
T Consensus 260 FpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~ 298 (514)
T KOG2373|consen 260 FPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLF 298 (514)
T ss_pred hhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHH
Confidence 56788888 8999999999999999999999766665543
No 197
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.73 E-value=0.025 Score=49.11 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
|+-|+|+||||||++|..+|... ++.+|++..-+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~------------~~~~is~~d~l 34 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF------------GFTHLSAGDLL 34 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc------------CCeEEECChHH
Confidence 45789999999999999998753 25677765433
No 198
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.73 E-value=0.021 Score=57.75 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=30.1
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-|+|++|+|||.|+..++..+.- ...+.+++|++++.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~-----~~~~~~v~yi~~~~ 170 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQ-----NEPDLRVMYITSEK 170 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHH-----hCCCCeEEEEEHHH
Confidence 679999999999999988876531 12467899999863
No 199
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.72 E-value=0.026 Score=49.05 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=21.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|.+.-|.|++|||||+|+..++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999987763
No 200
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.035 Score=50.46 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|.++-|.|++|+|||+|..-++-
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999998874
No 201
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.71 E-value=0.039 Score=56.89 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+++..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||+|++....+
T Consensus 137 ~~R~~v~epl~TGIkaID~l~--pigrGQR~~I~g~~g~GKt~Lal~~i~~ 185 (502)
T PRK13343 137 IERDFVTEPLQTGIKVVDALI--PIGRGQRELIIGDRQTGKTAIAIDAIIN 185 (502)
T ss_pred hhcCCCCcccccCCceecccc--ccccCCEEEeeCCCCCCccHHHHHHHHh
Confidence 444445688999999999998 5667888999999999999998877665
No 202
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.71 E-value=0.076 Score=53.92 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=29.1
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-|+|++|+|||.|+..++..+. ....+.+++|++++.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~-----~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIE-----SNFSDLKVSYMSGDE 181 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHH-----HhCCCCeEEEEEHHH
Confidence 56899999999999987776542 113567999999873
No 203
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.71 E-value=0.11 Score=53.04 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=41.6
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.++.-...+.||++.+|.++ -+-.|.=.-|+|.+|+|||+|+..++..+.
T Consensus 119 ~R~~i~epl~TGi~~ID~l~--pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ 168 (460)
T PRK04196 119 AREYPEEFIQTGISAIDGLN--TLVRGQKLPIFSGSGLPHNELAAQIARQAK 168 (460)
T ss_pred hcCCCCccccCCeEEEeccC--cccCCCEEEeeCCCCCCccHHHHHHHHhhh
Confidence 44455688999999999998 466678888999999999999999887753
No 204
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.71 E-value=0.043 Score=50.28 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=30.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
|+-|.|++|||||+||..++..... ...++.+.+|...+-+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~-----~~~~~~v~vi~~D~f~~~~ 44 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR-----WPDHPNVELITTDGFLYPN 44 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh-----cCCCCcEEEEecCcccCcH
Confidence 4568999999999999988765421 0134567777777654443
No 205
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.70 E-value=0.036 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.5
Q ss_pred ccEEEEecCCCCChhhHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSH 189 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLal 189 (315)
|.++.|.|++|+|||+|.=
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4589999999999999943
No 206
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.038 Score=53.43 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=30.7
Q ss_pred EEecCCCCChhhHHHHHHHHccCCccc----------------cCCCCCeEEEEeCCCCCCh
Q psy13674 175 EAFGEFRTGKTQLSHTLSITAQLPDET----------------RGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~~~lp~~~----------------~gg~~~~vvyIDtE~~F~~ 220 (315)
.++||||.|||+||+=+|...-..... -.=.++-|+|||--+..++
T Consensus 56 Ll~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 56 LLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred EeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcCh
Confidence 489999999999999888764322110 1112578999996664433
No 207
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.70 E-value=0.042 Score=48.65 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=25.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|+-|.|++|||||+|+..++... .++++.+++.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l---------~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---------GNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---------CCCCeEEEEecc
Confidence 45689999999999999987653 134566666664
No 208
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.69 E-value=0.042 Score=52.58 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+++..-...+.||++.+|-++ -+-.|.=.-|+|.+|+|||+|...++.+..
T Consensus 44 ~~R~~i~e~l~TGIkaID~l~--pig~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 44 VARIYPEEMIQTGISAIDGMN--TLVRGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred hhcCCcccccccCcEeeeccc--ccccCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 344445678999999999998 566788889999999999999999887764
No 209
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.68 E-value=0.028 Score=49.78 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=24.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|.++-|.|++|||||+|+..++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999998753
No 210
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.66 E-value=0.038 Score=49.00 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|..-++-.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999999999988753
No 211
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.099 Score=46.78 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
++-|.|+||||||+++..+|-..-+|
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 56789999999999999999876543
No 212
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.65 E-value=0.039 Score=48.36 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887653
No 213
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.65 E-value=0.026 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHcc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
|+-|+|++|||||+||..|+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999987653
No 214
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.63 E-value=0.035 Score=49.78 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 577899999999999999999987754
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.62 E-value=0.053 Score=50.80 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.|.-..|.|+||+|||++|..++.. .+..+++|+....+.+.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~----------lg~~~~~i~~~~~~~~~ 61 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARK----------RDRPVMLINGDAELTTS 61 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHH----------hCCCEEEEeCCccCCHH
Confidence 3445668999999999999999863 24567777766555443
No 216
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.61 E-value=0.03 Score=44.98 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.3
Q ss_pred EEecCCCCChhhHHHHHHHH
Q psy13674 175 EAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~ 194 (315)
-|.|.||||||++|..|+..
T Consensus 2 ~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999876
No 217
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.60 E-value=0.064 Score=50.03 Aligned_cols=28 Identities=25% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-.+..|..+-|.|++|||||+|...++-
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3678899999999999999999998854
No 218
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.60 E-value=0.04 Score=50.23 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988743
No 219
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.59 E-value=0.12 Score=53.19 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=26.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
|++...=..++||||||||.+|..+|...-+|
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 66666678899999999999999998876554
No 220
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.58 E-value=0.066 Score=56.06 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=47.8
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+++..-..++.||...||.++ -+-.|.-.-|.|++|+|||.|.++++..+ ...-+||+-+-
T Consensus 201 ~~R~~~~~PL~TG~RvID~lf--Pi~kGqr~~I~gg~G~GKT~l~~~lak~s---------~aDviVyvg~G 261 (591)
T TIGR01042 201 TEKLPANTPLLTGQRVLDALF--PCVQGGTTAIPGAFGCGKTVISQSLSKYS---------NSDAIVYVGCG 261 (591)
T ss_pred hhccCCCCccccchhhhhhcc--chhcCCeEEEEcCCCcCHHHHHHHHHhcc---------CcCEEEEEEEe
Confidence 344455688999999999998 45567788999999999999999997643 23457887764
No 221
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.58 E-value=0.04 Score=49.14 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987643
No 222
>PRK14527 adenylate kinase; Provisional
Probab=94.56 E-value=0.04 Score=48.74 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=24.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
..+.++-++|+||||||++|..++....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999987643
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.56 E-value=0.047 Score=47.49 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999988754
No 224
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.55 E-value=0.048 Score=48.52 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|.++-|.|++|+|||+|+.-++-
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999997764
No 225
>PRK06696 uridine kinase; Validated
Probab=94.55 E-value=0.08 Score=48.17 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=30.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
--|+-|.|++|||||+||..|+.... ..+..++-|...+-+.+.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~-------~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIK-------KRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-------HcCCeEEEeccccccCCH
Confidence 45899999999999999999987642 123455655655444443
No 226
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.54 E-value=0.041 Score=50.14 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|.++-|.|++|+|||+|..-++-
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999887764
No 227
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.54 E-value=0.029 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..++-|.|+||||||++|..++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998653
No 228
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.041 Score=51.36 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999888654
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.53 E-value=0.044 Score=47.84 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.|++|+|||+|+..++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5788999999999999999999988754
No 230
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.042 Score=50.18 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 231
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.087 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..-|+-|+|.+|||||++|..++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 232
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.52 E-value=0.042 Score=49.30 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999888753
No 233
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.51 E-value=0.096 Score=51.03 Aligned_cols=44 Identities=30% Similarity=0.331 Sum_probs=34.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
.+..|.|.||||||.|+++++.... ....+..++|+.-...+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~-----~~~~~~~~~~l~~n~~l~~ 45 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQ-----NSEEGKKVLYLCGNHPLRN 45 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhh-----ccccCCceEEEEecchHHH
Confidence 4778999999999999999999872 1236788899998875543
No 234
>PRK08727 hypothetical protein; Validated
Probab=94.50 E-value=0.033 Score=51.27 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=30.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-.-|+|++|+|||.|+..+|..+.- .+.+++|++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~-------~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ-------AGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEeHHH
Confidence 34789999999999999988877541 356899998764
No 235
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.50 E-value=0.043 Score=48.85 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987653
No 236
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.49 E-value=0.044 Score=50.02 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 237
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.49 E-value=0.045 Score=48.88 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887754
No 238
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.48 E-value=0.076 Score=48.19 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC--CCCChh
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE--NTLYPL 221 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE--~~F~~~ 221 (315)
-+..|.-.-|.||+|||||+|..++|.-.. +..+.+|+-.| ++..|+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lis--------p~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLIS--------PTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccC--------CCCceEEEcCccccccChH
Confidence 467899999999999999999999886432 44556666655 355555
No 239
>PRK07261 topology modulation protein; Provisional
Probab=94.48 E-value=0.034 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEecCCCCChhhHHHHHHHHccCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp 198 (315)
+-|+|+||||||+|+.+++....+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999998765443
No 240
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.47 E-value=0.031 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCcccEEEEecCCCCChhhHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla 192 (315)
+..|.++-|.|++|+|||+|+..++
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999998764
No 241
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.46 E-value=0.042 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.|++|+|||+|..-++-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999988754
No 242
>PRK12377 putative replication protein; Provisional
Probab=94.46 E-value=0.037 Score=52.00 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=29.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-.-|+|+||+|||.|+..++..+.- .+..|+|++..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVP 138 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEEEHH
Confidence 4678999999999999999887642 45678998875
No 243
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.45 E-value=0.04 Score=49.29 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4678999999999999999999987653
No 244
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.45 E-value=0.044 Score=49.19 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999988754
No 245
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.42 E-value=0.041 Score=49.88 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4678999999999999999999987643
No 246
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.41 E-value=0.034 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|.++-|.|++|+|||+|+..|+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 678999999999999999998764
No 247
>PTZ00301 uridine kinase; Provisional
Probab=94.40 E-value=0.058 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-|+-|+|+||||||+||..++...
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 578899999999999999887654
No 248
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.044 Score=49.33 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999988764
No 249
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.40 E-value=0.048 Score=49.28 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999999988754
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.40 E-value=0.048 Score=46.40 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|..-++-.
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5678999999999999999999877654
No 251
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.39 E-value=0.048 Score=48.50 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.|++|+|||+|+.-++-.
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4788999999999999999999988664
No 252
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.047 Score=48.76 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887643
No 253
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.049 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999988764
No 254
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.38 E-value=0.055 Score=48.24 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.+.++-|.|.+|+|||+|+..++.... ..+.+++|+|..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-------~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-------ELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-------hCCCCEEEEcCE
Confidence 5688999999999999999998877542 135568888764
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.065 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=27.3
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.-|.+++.+|-...+ .++||||+|||+||.-+|...-
T Consensus 37 ~~lrr~v~~~~l~Sm--Il~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 37 KPLRRAVEAGHLHSM--ILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred chHHHHHhcCCCcee--EEECCCCCCHHHHHHHHHHhhC
Confidence 346667766555544 4799999999999998887543
No 256
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.35 E-value=0.19 Score=51.51 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=41.6
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+..-...+.||++.+|-++ -+-.|.=.-|+|.+|+|||+|+.+++.++.
T Consensus 117 ~R~~i~e~l~TGI~aID~l~--~ig~GQRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 117 ARIYPEEMIQTGISAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred HcCCCCCeeecCcEEEeccC--ccccCCeeeeecCCCCCHHHHHHHHHHhhc
Confidence 33345578999999999998 466788888999999999999999987764
No 257
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.34 E-value=0.044 Score=54.89 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
|+.+..-+.|+||||||||.|+..+|....
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 677777788999999999999999987654
No 258
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.34 E-value=0.058 Score=53.49 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.6
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
....|.-|+||||+|||+|+..|+....
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999987753
No 259
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.34 E-value=0.046 Score=49.04 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+.+|+++-|.|++|+|||+|..-++-..
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999999887543
No 260
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.053 Score=47.09 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+++|+++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999999999988654
No 261
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.33 E-value=0.051 Score=47.05 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999999999999977653
No 262
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.041 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
.+-|.|.||||||++|..+|....+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999987543
No 263
>PRK13768 GTPase; Provisional
Probab=94.31 E-value=0.052 Score=50.74 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=30.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.++-+.|++|+|||++|.+++..... .+.+++.||.+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~-------~g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE-------QGYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh-------cCCceEEEECCC
Confidence 47889999999999999999877642 456788887653
No 264
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.28 Score=53.09 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHH
Q psy13674 112 SQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTL 191 (315)
Q Consensus 112 ~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalql 191 (315)
.-..|++..-+++|++.+.+... .....+.+.+. |..-.+.++.. .--+..|.|+-|+|++|+|||+.+..+
T Consensus 134 Ll~~dv~~~la~~l~~~l~~~~~--~~~~~~~l~~~-----L~~~l~il~~~-~~~~~~g~Vi~lVGpnGvGKTTTiaKL 205 (767)
T PRK14723 134 LLGAGFSGQLARALLERLPVGYD--RPAAMAWIRNE-----LATHLPVLRDE-DALLAQGGVLALVGPTGVGKTTTTAKL 205 (767)
T ss_pred HHHCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH-----HHHHhhhccCC-CcccCCCeEEEEECCCCCcHHHHHHHH
Confidence 34468888888888887754321 11122222111 00000011110 011345789999999999999999999
Q ss_pred HHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 192 SITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 192 a~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|..... . ....++.+|+++ +|++
T Consensus 206 A~~~~~-~----~G~kkV~lit~D-t~Ri 228 (767)
T PRK14723 206 AARCVA-R----EGADQLALLTTD-SFRI 228 (767)
T ss_pred HhhHHH-H----cCCCeEEEecCc-ccch
Confidence 976532 0 122467777766 5653
No 265
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.30 E-value=0.052 Score=47.13 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=47.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCC----CCCeEEEEeCCCCCChhhHHHHHHHH--H-HH---HHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY----TGGKVIYVDSENTLYPLLNIIAIASL--V-TL---VGS 236 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg----~~~~vvyIDtE~~F~~~~Rl~~iaer--~-~l---L~~ 236 (315)
=+.+|.++-|.|++|+|||+|+.-++-... | . .|. ....+.|+.-+..|... .+.+.... . .+ ..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~-~-~G~i~~~~~~~i~~~~q~~~~~~~-tv~~nl~~~~~~~LS~G~~~ 98 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWP-W-G-SGRIGMPEGEDLLFLPQRPYLPLG-TLREQLIYPWDDVLSGGEQQ 98 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC-C-C-CceEEECCCceEEEECCCCccccc-cHHHHhhccCCCCCCHHHHH
Confidence 467899999999999999999998875432 2 1 110 01356677666544433 33332211 0 01 233
Q ss_pred HHHHHHHHhhcc-cEEEE
Q psy13674 237 RLPMSFHITRED-LIVFF 253 (315)
Q Consensus 237 ~~~~L~~LA~e~-iaVV~ 253 (315)
-+...+.++.+. +.+++
T Consensus 99 rv~laral~~~p~~lllD 116 (166)
T cd03223 99 RLAFARLLLHKPKFVFLD 116 (166)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 444455555566 66664
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.29 E-value=0.036 Score=54.19 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=31.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-.-|+|++|+|||.|+..+|..+. ..+..|+|+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-------~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-------DRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-------HCCCeEEEEEHHH
Confidence 4578999999999999999888764 2467899999763
No 267
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.29 E-value=0.05 Score=49.22 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988643
No 268
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.27 E-value=0.031 Score=47.42 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=18.2
Q ss_pred EecCCCCChhhHHHHHHHHc
Q psy13674 176 AFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 176 i~G~~GsGKTqLalqla~~~ 195 (315)
|.|+||||||++|..+|...
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 67999999999999999874
No 269
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=94.27 E-value=0.083 Score=55.39 Aligned_cols=60 Identities=30% Similarity=0.364 Sum_probs=47.5
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++.....++.||+..||.++ -+..|.=.-|.|++|+|||.|.+++|..+. ..-+||+-+-
T Consensus 203 ~R~~~~~pL~TGirvID~l~--Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~---------adivVyvg~G 262 (586)
T PRK04192 203 EKLPPVEPLITGQRVIDTFF--PVAKGGTAAIPGPFGSGKTVTQHQLAKWAD---------ADIVIYVGCG 262 (586)
T ss_pred ccCCCCCccccCchhhhccc--ccccCCeEEEecCCCCCHHHHHHHHHhcCC---------CCEEEEEEcC
Confidence 33445688999999999998 455677788999999999999999988652 3467777655
No 270
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.26 E-value=0.054 Score=47.97 Aligned_cols=28 Identities=25% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999888653
No 271
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.25 E-value=0.043 Score=46.99 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++-|+|.||||||+||..++....- .+.++++|+.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~-------~g~~~~~i~~d 36 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ-------RGRPVYVLDGD 36 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEEcCH
Confidence 3568999999999999999886531 24467788754
No 272
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.25 E-value=0.047 Score=56.31 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=40.4
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+++..-..++.||+..+|.++ -+-.|.=.-|+|.+|+|||.||++...+
T Consensus 137 ~~R~~~~~~l~TGi~~ID~l~--pigrGQr~~Ifg~~g~GKt~lal~~i~~ 185 (502)
T PRK09281 137 IDRKSVHEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIIN 185 (502)
T ss_pred cccCCccceeecCCeeeeccc--ccccCcEEEeecCCCCCchHHHHHHHHH
Confidence 344445678999999999998 5667888999999999999999886554
No 273
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.25 E-value=0.054 Score=46.02 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.5
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.+.++-|+|+||||||+++..++...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999998764
No 274
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.053 Score=48.97 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=++.|.++-|.|++|+|||+|..-++-.
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999988754
No 275
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.24 E-value=0.037 Score=51.07 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=27.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++-++|.||||||++|..++.... ..+..+++++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~-------~~~~~v~~i~~D 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS-------EKNIDVIILGTD 36 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-------HcCCceEEEccH
Confidence 356899999999999999987643 134567888764
No 276
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.24 E-value=0.31 Score=46.43 Aligned_cols=76 Identities=8% Similarity=0.019 Sum_probs=48.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHH---HHHH-------HHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIAS---LVTL-------VGSRLP 239 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iae---r~~l-------L~~~~~ 239 (315)
.+..+-++|++|+|||+++..++.... ..+.++.+|++. .++.. -+.++.. ..++ -..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-------~~~~~v~~i~~D-~~ri~-~~~ql~~~~~~~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-------GKKKTVGFITTD-HSRIG-TVQQLQDYVKTIGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-------HcCCeEEEEecC-CCCHH-HHHHHHHHhhhcCceEEecCCHHHHHH
Confidence 668999999999999999999987653 235688888877 45443 3333332 2221 233445
Q ss_pred HHHHHhh--cc-cEEEEE
Q psy13674 240 MSFHITR--ED-LIVFFP 254 (315)
Q Consensus 240 ~L~~LA~--e~-iaVV~~ 254 (315)
.|.++++ .+ +.+|++
T Consensus 145 ~l~~l~~~~~~D~ViIDt 162 (270)
T PRK06731 145 ALTYFKEEARVDYILIDT 162 (270)
T ss_pred HHHHHHhcCCCCEEEEEC
Confidence 5555553 45 666653
No 277
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.053 Score=49.09 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|+.-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999987644
No 278
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.24 E-value=0.052 Score=48.43 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999977653
No 279
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.23 E-value=0.036 Score=49.64 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999988753
No 280
>PRK06526 transposase; Provisional
Probab=94.23 E-value=0.026 Score=53.06 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=29.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
.+.-.-|+|+||+|||.|+..++..+.- .+.+|+|++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~-------~g~~v~f~t~ 134 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATA 134 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH-------CCCchhhhhH
Confidence 4566889999999999999999887642 3566777654
No 281
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.22 E-value=0.05 Score=49.64 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 282
>PRK06921 hypothetical protein; Provisional
Probab=94.22 E-value=0.054 Score=51.18 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=30.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.-.-|+|++|+|||.|+..+|..+.- ..+..|+|++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~------~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR------KKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh------hcCceEEEEEHH
Confidence 345679999999999999999887531 126789999964
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.21 E-value=0.042 Score=41.11 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.7
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-|.|++|+|||+++..++..
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999876
No 284
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.21 E-value=0.093 Score=53.98 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHhhcC---CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 160 LDKILGG---GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 160 LD~lL~G---Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
|.++|.+ -++.|.++-|+|++|||||+|.. .....| ..+..+++|....+.+.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr---~~l~~~------~sGg~I~ldg~~~~~~~ 73 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA---ENKRKF------SEGYEFFLDATHSFSPN 73 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh---cCCCCC------CCCCEEEECCEECCCCC
Confidence 4455533 47899999999999999999998 111112 34456888877666654
No 285
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.056 Score=47.02 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999987654
No 286
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.20 E-value=0.18 Score=51.32 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=37.8
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-...+.||++.||.++ =+..|..+-|+|++|+|||+|...++..
T Consensus 143 ~~e~l~TGi~~iD~l~--~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 143 IREILSTGVRSIDGLL--TVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccccccceeeeeeecc--ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999995 6788999999999999999998777654
No 287
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.20 E-value=0.055 Score=49.19 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++--
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988753
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.19 E-value=0.032 Score=55.24 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=30.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...-|+|++|+|||.|+..++..+.- ...+..++||+++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~-----~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILE-----NNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-----hCCCCcEEEEEHH
Confidence 34678999999999999888776531 1236789999876
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.055 Score=49.08 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+..++-.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999988753
No 290
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.18 E-value=0.056 Score=50.34 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
-+..|.++-|.||+|||||+|..-+.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 57889999999999999999977654
No 291
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.055 Score=50.64 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987653
No 292
>PRK07667 uridine kinase; Provisional
Probab=94.17 E-value=0.073 Score=47.47 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=29.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
-|+-|+|.+|+|||+||..++.... ..+.++..|+...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~-------~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK-------QEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-------hCCCcEEEEEcCc
Confidence 5889999999999999999987653 1344666777665
No 293
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.17 E-value=0.058 Score=40.56 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.9
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
+-++|..|+|||+++..++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988764
No 294
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=94.16 E-value=0.22 Score=50.62 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=54.5
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc-c-------------------cCCC
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE-T-------------------RGYT 205 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~-~-------------------~gg~ 205 (315)
+......|.||++.+|-++ -+..|.=.-|+|.+|+|||+|..++|..+..... + .|..
T Consensus 117 R~~~~e~l~TGIkaID~l~--pl~rGQkigIF~gaGvgk~~L~~~ia~~~~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l 194 (436)
T PRK02118 117 RIVPREMIRTGIPMIDVFN--TLVESQKIPIFSVSGEPYNALLARIALQAEADIIILGGMGLTFDDYLFFKDTFENAGAL 194 (436)
T ss_pred cCCcccccccCcEEeeccc--ccccCCEEEEEeCCCCCHHHHHHHHHHhhCCCeEEEEEeccchhHHHHHHHHHhhCCCc
Confidence 3345678999999999997 5666777788999999999999999877642100 0 3445
Q ss_pred CCeEEEEeCCCCCChhhHHH
Q psy13674 206 GGKVIYVDSENTLYPLLNII 225 (315)
Q Consensus 206 ~~~vvyIDtE~~F~~~~Rl~ 225 (315)
...|+++.+-+.=... |+.
T Consensus 195 ~rtvlv~~~adep~~~-R~~ 213 (436)
T PRK02118 195 DRTVMFIHTASDPPVE-CLL 213 (436)
T ss_pred ceEEEEEECCCCCHHH-HHH
Confidence 6667777776654445 544
No 295
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.14 E-value=0.07 Score=48.18 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+..|.++-|.|++|+|||+|+.-++-..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999876543
No 296
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.14 E-value=0.057 Score=49.67 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999977654
No 297
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.12 E-value=0.056 Score=50.66 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=29.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-.-++|++|+|||.|+..+|..+.. .+..|+||+..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it~~ 136 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVA 136 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEHH
Confidence 5789999999999999999887642 46789999754
No 298
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.054 Score=49.22 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|+++-|.|++|+|||+|+.-++-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999987654
No 299
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.12 E-value=0.1 Score=49.08 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=29.2
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+|-++ -+-.|..+-|+|++|+|||+|+..++.+..
T Consensus 6 ~id~~~--~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 6 VVDLFA--PIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred heeeec--ccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456555 456799999999999999999998887653
No 300
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.11 E-value=0.054 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4778999999999999999999977653
No 301
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.11 E-value=0.041 Score=49.17 Aligned_cols=27 Identities=26% Similarity=0.076 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|+.-++-
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578899999999999999999987764
No 302
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.061 Score=47.01 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999998864
No 303
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.11 E-value=0.042 Score=48.98 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988753
No 304
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.11 E-value=0.061 Score=48.48 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999977653
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.09 E-value=0.051 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.7
Q ss_pred EecCCCCChhhHHHHHHHHcc
Q psy13674 176 AFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 176 i~G~~GsGKTqLalqla~~~~ 196 (315)
+.||+|||||++|..+.--..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999987654
No 306
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.06 E-value=0.064 Score=48.22 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999988754
No 307
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.05 E-value=0.063 Score=49.20 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999987643
No 308
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.05 E-value=0.063 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
+..|+++-|.|++|+|||+|+..++-
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 67899999999999999999998874
No 309
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.04 E-value=0.04 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
|+-++|+||+|||+++..++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999764
No 310
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.06 Score=49.35 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999988754
No 311
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.02 E-value=0.064 Score=48.67 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+++|.++-|.|++|+|||+|+.-++-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999987653
No 312
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.059 Score=50.09 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988753
No 313
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.01 E-value=0.061 Score=48.87 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.|++|+|||+|+.-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988754
No 314
>PRK06315 type III secretion system ATPase; Provisional
Probab=94.00 E-value=0.059 Score=54.80 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=41.5
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++..-...+.||+..+|.++ -+..|..+-|+|++|+|||+|+..++...
T Consensus 140 ~R~~~~e~l~TGi~aID~~l--~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 140 HRAKLRTILSTGVRCIDGML--TVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred HcccccccccceEEEEeccc--cccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 44444578999999999987 67889999999999999999998887644
No 315
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.058 Score=50.82 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|...++--
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999988643
No 316
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.00 E-value=0.06 Score=47.24 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887654
No 317
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.00 E-value=0.062 Score=49.71 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 318
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.98 E-value=0.039 Score=55.59 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=30.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
-.-|+|++|+|||.|+..++..+.- ...+.+++|++++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~-----~~~~~~v~yi~~~~ 188 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE-----KNPNAKVVYVTSEK 188 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-----hCCCCeEEEEEHHH
Confidence 3678999999999999998877641 12467899998873
No 319
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.98 E-value=0.061 Score=49.02 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..|.++-|.|++|+|||+|..-++-.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999987653
No 320
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.06 Score=50.91 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35778999999999999999999988753
No 321
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.94 E-value=0.066 Score=48.70 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=++.|.++-|.|++|+|||+|..-++-.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999987754
No 322
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.94 E-value=0.076 Score=47.89 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987654
No 323
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.92 E-value=0.065 Score=47.98 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999988865
No 324
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.048 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999988753
No 325
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.90 E-value=0.11 Score=54.50 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=48.4
Q ss_pred HHhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 144 l~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+++..-..++.||+..||.++ -+-.|.=.-|.|++|+|||.+.++++... ...-+||+-+-
T Consensus 197 ~~R~~~~~pL~TGiRvID~l~--Pi~kGqr~~I~gg~G~GKT~l~~~lak~~---------~adivVyvg~G 257 (578)
T TIGR01043 197 KEKLPPEVPLITGQRILDTFF--PIAKGGTAAIPGPFGSGKTVTQHQLAKWS---------DADIVVYIGCG 257 (578)
T ss_pred hhcCCCCcchhccchhhhccc--cccCCCEEEEecCCCCCHHHHHHHHHhcC---------CCCEEEEEEec
Confidence 344456688999999999998 46667888899999999999999998753 34577887653
No 326
>PRK01172 ski2-like helicase; Provisional
Probab=93.90 E-value=0.13 Score=54.36 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=50.4
Q ss_pred Hhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHh
Q psy13674 79 LQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKIC 133 (315)
Q Consensus 79 L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~ 133 (315)
|.+ +|++...+.+|.++||+|+.||...++.+|.++.|++...+++|++.+.+.+
T Consensus 614 L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 669 (674)
T PRK01172 614 LVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMKIS 669 (674)
T ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 344 6999999999999999999999999999999999999999999999987654
No 327
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.90 E-value=0.69 Score=44.45 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=59.8
Q ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhc-CCCCcccEEEEecC
Q psy13674 105 MTTRRKMSQIKGF----SEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILG-GGIESMAITEAFGE 179 (315)
Q Consensus 105 ~~~~~~L~~~~gi----s~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~ 179 (315)
.++..+|..++|+ |..+|..+..-+.+++..- ..+.+.+.. .+=+.|+ -.-...-|+-|+|+
T Consensus 24 ~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~-~~~~~~~~~------------~~~~~l~~~~~~~pfIIgiaGs 90 (283)
T COG1072 24 TLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLY-VEARERLFA------------ELLRFLGTNNQQRPFIIGIAGS 90 (283)
T ss_pred ccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHH------------HHHHHhccCCCCCCEEEEeccC
Confidence 3456778788774 5578888887776665221 122222221 1112222 12344668999999
Q ss_pred CCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 180 ~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+|+|||++|--++..... . +...+|--|.|.|-..+.
T Consensus 91 vavGKST~ar~L~~ll~~----~-~~~~~v~lvpmDGFhy~n 127 (283)
T COG1072 91 VAVGKSTTARILQALLSR----W-PESPKVDLVTMDGFHYPN 127 (283)
T ss_pred ccccHHHHHHHHHHHHhh----C-CCCCceEEEeccccccCH
Confidence 999999999988765542 1 223367778888744454
No 328
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.90 E-value=0.075 Score=48.20 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..|+++-|.|++|+|||+|+.-++-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999988754
No 329
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.059 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 567899999999999999999997764
No 330
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.31 Score=48.36 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 160 LDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 160 LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
|...+.|+.|.. .-|+|++|+|||+....++..+.-+. ....++||++...=.+..=+..+++.+
T Consensus 33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred HHHHhcCCCCcc--EEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 666777888886 67789999999999999988765321 223399999986433331244566654
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.88 E-value=0.065 Score=47.69 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 5688999999999999999999877653
No 332
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.88 E-value=0.026 Score=49.70 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=31.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
.+..+-|+|+.|+|||.|+.+++.... ..+..++|++.-....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~-------~~~~~~~y~~~~~~~~ 61 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELK-------EKGYKVVYIDFLEESN 61 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT---------EECCCHHCCTTBSH
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhh-------hcCCcEEEEecccchh
Confidence 357889999999999999999987653 1233678887754443
No 333
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.88 E-value=0.067 Score=50.07 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6778999999999999999999877654
No 334
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.87 E-value=0.067 Score=48.64 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988753
No 335
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.87 E-value=0.14 Score=49.34 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=35.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
..-|+|+||+|||.++..++....-... ..+..-.++||++...-.+..-+.++++.+
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~-~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAE-DRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhh-ccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988765421000 001225789999875433331244454443
No 336
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.048 Score=49.61 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988743
No 337
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.073 Score=48.45 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=+.+|+++-|.|++|+|||+|..-++-..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999999999887543
No 338
>PRK10908 cell division protein FtsE; Provisional
Probab=93.85 E-value=0.072 Score=48.00 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999998874
No 339
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.85 E-value=0.074 Score=47.39 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|+.-++-.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999988654
No 340
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.85 E-value=0.071 Score=54.08 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=37.9
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+.||+..+|.++ -+..|..+-|+|++|+|||+|+..++.+.
T Consensus 138 ~~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~ 180 (432)
T PRK06793 138 DVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNA 180 (432)
T ss_pred hccCCCCEEEeccc--eecCCcEEEEECCCCCChHHHHHHHhccC
Confidence 56889999999987 67789999999999999999998888764
No 341
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.84 E-value=0.08 Score=50.14 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=37.0
Q ss_pred CCcccE-EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 168 IESMAI-TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 168 l~~g~I-tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...|++ |.+-|||++|||++...+|....-.. .+....+|..||+.+
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~--~~~l~kkv~IiDers 180 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGI--NQFLPKKVGIIDERS 180 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhccc--cccCCceEEEEeccc
Confidence 345677 99999999999999999998876321 233678999999775
No 342
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.053 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.5
Q ss_pred EEEecCCCCChhhHHHHHHHHccCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp 198 (315)
..|.|+||+|||++|..|+....+|
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4689999999999999999885554
No 343
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.051 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999998765
No 344
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.82 E-value=0.038 Score=56.06 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=28.6
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.-|+|++|+|||.|+..++..+.. .+.+++|++.+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~-------~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE-------SGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEeeHH
Confidence 458999999999999988876531 35789999976
No 345
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=93.81 E-value=0.14 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.+.-|+|++|||||+|+.-++-
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 357799999999999999999998764
No 346
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.81 E-value=0.058 Score=55.55 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=39.1
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||+|++....+
T Consensus 138 ~R~~v~epl~TGI~aID~l~--pigrGQR~~Ifg~~g~GKT~Lal~~I~~ 185 (497)
T TIGR03324 138 DRAPVTVPLQTGLKVIDALI--PIGRGQRELILGDRQTGKTAIAIDTILN 185 (497)
T ss_pred ccCCCCchhhcCCEEEeccC--CcccCCEEEeecCCCCCHHHHHHHHHHH
Confidence 33344678999999999998 5667888999999999999998865444
No 347
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.068 Score=50.41 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-|..|+++-|.|++|+|||+|+.-+|-.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5678999999999999999999877644
No 348
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.78 E-value=0.073 Score=47.18 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999977653
No 349
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.78 E-value=0.069 Score=48.70 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 350
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.77 E-value=0.068 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999977653
No 351
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.067 Score=50.15 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999887653
No 352
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.77 E-value=0.053 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.|++|+|||+|+.-++-.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999999987653
No 353
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.07 Score=50.11 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|+++-|.|++|+|||+|+.-++--
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4678999999999999999999988653
No 354
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.73 E-value=0.053 Score=48.31 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988653
No 355
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.73 E-value=0.069 Score=52.20 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.+..-..|+||||+|||.++..+|...
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 55555558899999999999999998764
No 356
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.73 E-value=0.075 Score=47.59 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999998877653
No 357
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.052 Score=49.81 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=+..|.++-|.|++|+|||+|+.-++-..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999999887543
No 358
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.71 E-value=0.063 Score=53.32 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.+-.-+.|+||||||||.+|..+|...
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 45444557889999999999999998764
No 359
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.71 E-value=0.074 Score=48.95 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988643
No 360
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.70 E-value=0.082 Score=45.30 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.2
Q ss_pred hcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 164 LGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 164 L~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
|+--++.|.++-+.|+.|+|||+|+..++.....
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3334677899999999999999999999887544
No 361
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.07 Score=49.04 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999977654
No 362
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.076 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999977653
No 363
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.68 E-value=0.28 Score=47.20 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+-++..+-|.|.+|||||+++..++...
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56678899999999999999999998754
No 364
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.66 E-value=0.054 Score=49.25 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 365
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.64 E-value=0.056 Score=48.92 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.|++|+|||+|..-++-.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999887653
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.64 E-value=0.068 Score=54.49 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+++|+.+-|+|++|||||+|+.-++--
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999999999877643
No 367
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.64 E-value=0.076 Score=49.58 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999888654
No 368
>CHL00013 rpoA RNA polymerase alpha subunit
Probab=93.60 E-value=0.11 Score=50.83 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=50.1
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
.-.+|+.|+ |+.+-..-|++|||+|+.||+..+..+|.+++++....+++|++.+.+
T Consensus 261 ~~~~Ie~L~---LSvRs~NcLk~a~I~ti~dL~~~s~~dLl~ikN~GkKSl~EI~~~L~~ 317 (327)
T CHL00013 261 KQIFIEQLE---LSVRAYNCLKRANIHTLLDLLNYSQEDLLKIKNFGQKSAKEVLEALQK 317 (327)
T ss_pred hceeHHhcc---CchhhhhhhhhcCccCHHHHHhcCHHHHhhhhccCHhHHHHHHHHHHH
Confidence 334566665 999999999999999999999999999999999999998888887755
No 369
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.077 Score=49.95 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|..-++-.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999888644
No 370
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.07 Score=49.69 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4678999999999999999999977653
No 371
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.59 E-value=0.43 Score=43.87 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-++.|.++-|.||+|+|||+|.--+| -... +..+-++|..+
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIA-GF~~-------P~~G~i~i~g~ 61 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIA-GFET-------PASGEILINGV 61 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHH-hccC-------CCCceEEEcCe
Confidence 47889999999999999999865444 3333 34455666544
No 372
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.59 E-value=0.058 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~ 193 (315)
|.++-|.|++|+|||+|+..++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999999965
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.085 Score=44.93 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.|++|+|||+|...++-.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678899999999999999999888654
No 374
>PRK14531 adenylate kinase; Provisional
Probab=93.57 E-value=0.066 Score=47.18 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-++|+||||||++|..+|...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998764
No 375
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.57 E-value=0.059 Score=48.36 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|+.-++-.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987643
No 376
>PRK14530 adenylate kinase; Provisional
Probab=93.56 E-value=0.068 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..+-|.|+||||||++|..||...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467889999999999999998764
No 377
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.08 Score=49.55 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988653
No 378
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.55 E-value=0.088 Score=47.46 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999977653
No 379
>PRK08116 hypothetical protein; Validated
Probab=93.54 E-value=0.078 Score=50.14 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=28.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-.-|+|++|+|||.|+..++..+.- .+..++|++..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~-------~~~~v~~~~~~ 151 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE-------KGVPVIFVNFP 151 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEHH
Confidence 4679999999999999998877641 35778999854
No 380
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.54 E-value=0.07 Score=45.62 Aligned_cols=27 Identities=30% Similarity=0.112 Sum_probs=19.0
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+.++-|.|++|+|||.|...+...+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999887765
No 381
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.06 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999977654
No 382
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.06 Score=49.83 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=++.|.++-|.|++|+|||+|..-++-..
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36789999999999999999999887543
No 383
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.076 Score=50.14 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999988653
No 384
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.49 E-value=0.14 Score=57.67 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=33.1
Q ss_pred ChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 157 STELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 157 ~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
...|..+|..+...+.++-|+|++|+|||+||..++....
T Consensus 193 l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 193 IAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 3456777777777889999999999999999999977643
No 385
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.08 Score=49.72 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|+++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988753
No 386
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.48 E-value=0.1 Score=47.81 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 160 LDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 160 LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
+|.++ ...++-+.|++|||||.||+..|..... .+.-.+.+|+-
T Consensus 13 ~~al~-----~~~~v~~~G~AGTGKT~LA~a~Al~~v~-----~g~~~kiii~R 56 (205)
T PF02562_consen 13 LDALL-----NNDLVIVNGPAGTGKTFLALAAALELVK-----EGEYDKIIITR 56 (205)
T ss_dssp HHHHH-----H-SEEEEE--TTSSTTHHHHHHHHHHHH-----TTS-SEEEEEE
T ss_pred HHHHH-----hCCeEEEECCCCCcHHHHHHHHHHHHHH-----hCCCcEEEEEe
Confidence 55555 4568999999999999999999987753 24456676654
No 387
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.47 E-value=0.082 Score=50.15 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-=|..|.++-|.|++|+|||+|+..++-.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35788999999999999999999988754
No 388
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.46 E-value=0.091 Score=48.04 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|+++-|.|++|+|||+|...++-.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999999999988753
No 389
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.46 E-value=0.061 Score=49.89 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+..|.++-|.|++|+|||+|+.-++-..
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999999999887543
No 390
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.46 E-value=0.087 Score=48.22 Aligned_cols=28 Identities=32% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988753
No 391
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.45 E-value=0.078 Score=53.11 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
.|+.+-.+..|+||||||||.+|..+|..+-.
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 57888899999999999999999999887543
No 392
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.45 E-value=0.3 Score=49.36 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=40.1
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
.-...+.||+..+|-+|- +-.|.=+-||..+|+|||+|.-.+|.+...+
T Consensus 142 ~I~~~l~tGVRaIDgllT--~G~GQRiGIFAgsGVGKStLLgMiar~t~aD 190 (441)
T COG1157 142 PIEEPLDTGVRAIDGLLT--CGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (441)
T ss_pred cccccccccceeeecccc--cccCceeEEEecCCCcHHHHHHHHhccccCC
Confidence 345789999999999984 3357777889999999999999999887653
No 393
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.44 E-value=0.061 Score=48.88 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.7
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..|.++-|.|++|+|||+|+.-++-..
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999999999999999999887643
No 394
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.44 E-value=0.14 Score=45.17 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=30.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-....++||+|+|||.+|..+|...-. +.....+.+|..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~------~~~~~~~~~d~s 41 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV------GSERPLIRIDMS 41 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-------SSCCEEEEEEGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc------CCccchHHHhhh
Confidence 356789999999999999999876421 456778888865
No 395
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.44 E-value=0.063 Score=47.73 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTL 191 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalql 191 (315)
=++.|.++-|.||+|+|||+|..-+
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999999998765
No 396
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.44 E-value=0.059 Score=51.21 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=24.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++.|+|-||||||++|.+|+.... ..+..+++|+.+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~-------~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE-------EKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH-------HTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-------hcCCEEEEEccc
Confidence 678999999999999999987653 245678888833
No 397
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.063 Score=49.41 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=+..|.++-|.|++|+|||+|+.-++-..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46789999999999999999999887643
No 398
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.062 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999988753
No 399
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.064 Score=49.05 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999997764
No 400
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.40 E-value=0.086 Score=49.29 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999987643
No 401
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.40 E-value=0.087 Score=49.50 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=+..|+++-|.|++|+|||+|+.-++-..
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46789999999999999999999877543
No 402
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.40 E-value=0.11 Score=49.61 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=31.6
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+.++-|.|++|+|||+|+..++.... ..+.+|.+|+.+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~-------~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELR-------RRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-------HCCCeEEEEecC
Confidence 3578999999999999999999987653 135677777766
No 403
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.064 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|+++-|.|++|+|||+|+.-++-
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999998875
No 404
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.38 E-value=0.045 Score=55.49 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=39.2
Q ss_pred hcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..-...+.||+..||.++ =+..|..+-|+|++|+|||+|...++..
T Consensus 133 ~~~~~~l~TGi~aID~ll--~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 133 RAVDTPLDVGVNAINGLL--TIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccccccceeeccceE--eEecceEEEEECCCCCCccHHHHHHhcc
Confidence 334578999999999996 6778999999999999999998776653
No 405
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.38 E-value=0.07 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.4
Q ss_pred CCCcccEEEEecCCCCChhhHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLS 188 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLa 188 (315)
=++.|+++-|.|++|||||+|+
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHHH
Confidence 3678999999999999999997
No 406
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.065 Score=49.17 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|+++-|.|++|+|||+|..-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999988753
No 407
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.066 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+.+|.++-|.|++|+|||+|+.-++-..
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56889999999999999999999887654
No 408
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.36 E-value=0.057 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
-..|+||||+|||++|..++..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999988764
No 409
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.35 E-value=0.066 Score=49.24 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3678999999999999999999988654
No 410
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.33 E-value=0.067 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|+.-++-
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578899999999999999999997764
No 411
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.29 E-value=0.066 Score=49.62 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999988754
No 412
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.29 E-value=0.11 Score=52.73 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
...+.||+..||.++ -+..|..+-|+|++|+|||+|...++.
T Consensus 136 ~~~l~tGi~aID~ll--~i~~GqrigI~G~sG~GKSTLL~~I~~ 177 (433)
T PRK07594 136 TQPLMTGIRAIDSVA--TCGEGQRVGIFSAPGVGKSTLLAMLCN 177 (433)
T ss_pred hheeCCCceeeeeee--ecCCCCEEEEECCCCCCccHHHHHhcC
Confidence 456889999999996 788899999999999999999877764
No 413
>PLN03025 replication factor C subunit; Provisional
Probab=93.28 E-value=0.23 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.045 Sum_probs=20.2
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
..|+||||+|||+++..+|....
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999988753
No 414
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.28 E-value=0.065 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.2
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
..|+||||+|||.||..+|....
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999987653
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.061 Score=48.11 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|+|||+|..-++-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 4678999999999999999999887654
No 416
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=93.27 E-value=0.22 Score=41.90 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=34.5
Q ss_pred chHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHh
Q psy13674 76 VDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIK 115 (315)
Q Consensus 76 i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~ 115 (315)
+-.|.. +||.+.+...|..+||.|+++|...+|.+|.+..
T Consensus 52 ~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l 92 (122)
T PF14229_consen 52 QADLMRIPGIGPQYAELLEHAGVDTVEELAQRNPQNLHQKL 92 (122)
T ss_pred HHHhhhcCCCCHHHHHHHHHhCcCcHHHHHhCCHHHHHHHH
Confidence 334444 7999999999999999999999999999997654
No 417
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.25 E-value=0.092 Score=49.06 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999977654
No 418
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.068 Score=49.42 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+.+|.++-|.|++|+|||+|+.-++-..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999999887643
No 419
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.22 E-value=0.067 Score=47.39 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|+++-|.|++|+|||+|..-++-
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999998874
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.45 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++.+.|+||+|+|||++|.-+|...-
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999987653
No 421
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.18 E-value=0.17 Score=49.50 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC-CCCChh
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE-NTLYPL 221 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE-~~F~~~ 221 (315)
|-.|+||.|||||||...+...-.+ .-..+.|+||.-+ +..+|+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI-----~P~PETVfFItP~~~mIpp~ 133 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLI-----QPPPETVFFITPQKDMIPPQ 133 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcc-----cCCCCceEEECCCCCCCCHH
Confidence 6678999999999999998654333 1246789999887 566766
No 422
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.18 E-value=0.1 Score=46.51 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 367899999999999999999887664
No 423
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.095 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|+++-|.|++|+|||+|...++-
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 567899999999999999999998874
No 424
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.17 E-value=0.073 Score=47.90 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999988754
No 425
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.072 Score=49.03 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|+++-|.|++|+|||+|..-++-
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999998874
No 426
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.14 E-value=0.072 Score=48.20 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|+++-|.|++|+|||+|..-++-.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 5778999999999999999999987754
No 427
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.13 E-value=0.13 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=32.1
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.+.++|...+..+..+.|+|++|||||++...++..+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 56677777777789999999999999999998887654
No 428
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.10 E-value=1.8 Score=44.05 Aligned_cols=126 Identities=24% Similarity=0.234 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCCchHHHhcCCHHHHHHH---hCCCHHHHHHHHHHHHhHh----ccccchHHHHHHhhcCccceecCChh
Q psy13674 87 ADIKKLKSVGLCTIKGVQMTTRRKMSQI---KGFSEAKVDKIKEACMKIC----DNSFLTAAQVVEKRKQVFKITTGSTE 159 (315)
Q Consensus 87 ~~i~kL~~aGi~Tv~dll~~~~~~L~~~---~gis~~~v~ki~~~~~~~~----~~~~~tA~ell~~~~~~~~isTG~~~ 159 (315)
..+++|...|.-|-++|-.+- +++... .+++..-|.++++.+.+.. .+.-.++.+.+- ..=-++
T Consensus 11 ~~l~kl~g~~~i~E~~i~e~~-reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~i--------KiV~eE 81 (451)
T COG0541 11 NALKKLRGKGRITEKDVKEAL-REIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFI--------KIVYEE 81 (451)
T ss_pred HHHHHhhCCCcCCHHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHH--------HHHHHH
Confidence 345577777776666664433 233222 3677777777777776544 123334444321 111245
Q ss_pred HHHhhcCC-------CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhH---HHHHHH
Q psy13674 160 LDKILGGG-------IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLN---IIAIAS 229 (315)
Q Consensus 160 LD~lL~GG-------l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~R---l~~iae 229 (315)
|=.+||++ -.+-.++-++|--|+|||+.|-.||.... ..+.+|+.+.+. +|+|. - |.++++
T Consensus 82 Lv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk-------k~~~kvllVaaD-~~RpA-A~eQL~~La~ 152 (451)
T COG0541 82 LVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK-------KKGKKVLLVAAD-TYRPA-AIEQLKQLAE 152 (451)
T ss_pred HHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH-------HcCCceEEEecc-cCChH-HHHHHHHHHH
Confidence 66677531 22357889999999999999999998764 256777777776 67775 4 344455
Q ss_pred H
Q psy13674 230 L 230 (315)
Q Consensus 230 r 230 (315)
+
T Consensus 153 q 153 (451)
T COG0541 153 Q 153 (451)
T ss_pred H
Confidence 4
No 429
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.097 Score=49.58 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|+++-|.|++|+|||+|+.-++-.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5778999999999999999999988753
No 430
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.095 Score=48.79 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4678999999999999999999977654
No 431
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.09 E-value=0.076 Score=49.76 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
=+..|.++-|.|++|+|||+|+.-++-..
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999887644
No 432
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.09 E-value=0.078 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
+-|+|+||||||++|..||..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999875
No 433
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.08 E-value=0.23 Score=53.76 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.6
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|.+..++||||+|||++|..+|...
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998764
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.08 E-value=0.13 Score=45.48 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|+|++|+|||+|...++-.
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3566889999999999999999877654
No 435
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.1 Score=49.04 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|+++-|.|++|+|||+|+.-++-
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 577899999999999999999997764
No 436
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=0.23 Score=51.32 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++.+.|+||||+|||++++.+|....
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46689999999999999999987654
No 437
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.071 Score=48.55 Aligned_cols=27 Identities=33% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|+++-|.|++|+|||+|...++-
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 567899999999999999999987764
No 438
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.13 Score=49.93 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|||||+|+..++--
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 5678999999999999999999988653
No 439
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.1 Score=50.48 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 678899999999999999999998874
No 440
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.04 E-value=0.09 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.++.-..|+||||||||.++..+|...
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 67777778899999999999999998764
No 441
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.079 Score=48.73 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+.+|.++-|.|++|+|||+|+.-++-..
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999887543
No 442
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.03 E-value=0.11 Score=47.89 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999977654
No 443
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.03 E-value=0.052 Score=55.29 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-...+.||+..+|.++ -+..|..+-|+|++|+|||+|+..++..
T Consensus 145 v~~~l~TGi~aID~L~--~I~~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 145 VETGLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred ceEEcCCCcEEeeeec--eecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999986 6999999999999999999998777643
No 444
>PRK15453 phosphoribulokinase; Provisional
Probab=93.01 E-value=0.15 Score=49.20 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=31.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
.-|+-|+|.||||||++|..++... +..+.++++|+..+-.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if-------~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF-------RRENINAAVVEGDSFH 45 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-------hhcCCCeEEEeccccc
Confidence 4588899999999999999998543 2344568888877533
No 445
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.01 E-value=0.079 Score=48.96 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|.++-|.|++|+|||+|+.-++-.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999888654
No 446
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.081 Score=48.58 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+..|.++-|.|++|+|||+|+.-++-..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 46789999999999999999999887543
No 447
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.00 E-value=0.072 Score=48.86 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|.++-|.|++|+|||+|+.-++-
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 567899999999999999999987764
No 448
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.00 E-value=0.82 Score=49.71 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=22.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
..+.+.|+|++|+|||++++.++....
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345677999999999999999987653
No 449
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.99 E-value=0.079 Score=49.53 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987653
No 450
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.98 E-value=0.08 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+.+|+++-|.|++|+|||+|..-++-
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999998864
No 451
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.98 E-value=0.11 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...|+||||+|||.||..+|...
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHh
Confidence 35689999999999999998764
No 452
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.98 E-value=0.082 Score=48.60 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|+.-++-.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999988754
No 453
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.97 E-value=0.082 Score=48.26 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999888643
No 454
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.96 E-value=0.069 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
|+-|+|.||||||+||..++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999875
No 455
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.96 E-value=0.12 Score=44.73 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
|+-..+-.|+|||+++.++|..... .+.+|++||+...
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~-------~g~~VlliD~D~~ 38 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALAR-------KGKKVLLIDLDPQ 38 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-------TTS-EEEEEESTT
T ss_pred CEEEcCCCCccHHHHHHHHHhcccc-------ccccccccccCcc
Confidence 4556788999999999999998752 6899999999753
No 456
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.083 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|+++-|.|++|+|||+|..-++-
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999997774
No 457
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.95 E-value=0.13 Score=44.50 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=31.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
|.-..+-.|+|||+++.++|..++. .+.+|+.||....
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~-------~g~~vllvD~D~q 39 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAK-------LGYKVGLLDADIY 39 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHH-------cCCcEEEEeCCCC
Confidence 4556788999999999999998752 5789999998843
No 458
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.95 E-value=0.14 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=20.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.-..|+||||||||.+|..++..+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3357889999999999998776554
No 459
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.92 E-value=0.11 Score=49.38 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999987764
No 460
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.084 Score=48.62 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+.+|+++-|.|++|+|||+|..-++-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999888643
No 461
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=92.91 E-value=0.33 Score=45.17 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...|.-..+.+|.|||+++..+|...+. .+.+|+.||..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~-------~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQ-------LGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHh-------cCCeEEEEeCC
Confidence 4456777888999999999999998752 57899999986
No 462
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.078 Score=51.38 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|||||+|+..++--
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 5788999999999999999999988754
No 463
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.13 Score=51.25 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=31.6
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
--++-=.++|-+-+ ||.+-.=..+|||||+|||.||...|..
T Consensus 167 VELPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 167 VELPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred hcccccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 33455556677766 7777666789999999999999877654
No 464
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.89 E-value=0.12 Score=44.49 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.9
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+-+.|++|+|||+|+..++.... ..+.+++.++.+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~-------~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALR-------ARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-------HCCCEEEEEEeC
Confidence 45789999999999999987753 246778887766
No 465
>KOG0743|consensus
Probab=92.89 E-value=0.081 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.7
Q ss_pred hhHHHhhcC-------CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 158 TELDKILGG-------GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 158 ~~LD~lL~G-------Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++||+.+.| |.+=..=+.+|||||+|||.|...+|-.
T Consensus 215 ~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 215 DDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred HHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhh
Confidence 578888876 7777777999999999999998877653
No 466
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.11 Score=50.72 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|||||+|+.-++-.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999977653
No 467
>PHA02624 large T antigen; Provisional
Probab=92.87 E-value=0.14 Score=54.14 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=26.9
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-|+|...++.|+||+|+|||+||+.++.-
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~ 454 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDL 454 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999764
No 468
>KOG1532|consensus
Probab=92.86 E-value=0.65 Score=45.06 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=54.6
Q ss_pred cCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC---CCCCChhhHH------HHHHHHHHH--
Q psy13674 165 GGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS---ENTLYPLLNI------IAIASLVTL-- 233 (315)
Q Consensus 165 ~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt---E~~F~~~~Rl------~~iaer~~l-- 233 (315)
+|++....++.+.|-.|||||+|+..|.....- ......++-+|- +-.|...--| .+..+.++|
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~-----~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHA-----KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhh-----ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 477777889999999999999999999776542 123355555552 1223221112 233444432
Q ss_pred --------------HHHHHHHHHHHhhcc-cEEEE
Q psy13674 234 --------------VGSRLPMSFHITRED-LIVFF 253 (315)
Q Consensus 234 --------------L~~~~~~L~~LA~e~-iaVV~ 253 (315)
+.+++..+.+.+.++ ..+|+
T Consensus 88 NGgI~TsLNLF~tk~dqv~~~iek~~~~~~~~liD 122 (366)
T KOG1532|consen 88 NGGIVTSLNLFATKFDQVIELIEKRAEEFDYVLID 122 (366)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcccCEEEEc
Confidence 567778888999998 66664
No 469
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=92.86 E-value=0.33 Score=48.34 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=65.5
Q ss_pred cchHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccce
Q psy13674 75 DVDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKI 153 (315)
Q Consensus 75 ~i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~i 153 (315)
.+.++.+ .|+++..+.++++.|.-.... ...--.+.+.+|++.+++..+.+..... + ++
T Consensus 41 ~i~e~A~~~gvs~~tiR~ye~~gll~~~~--~~~~gr~~~~~~ftL~ei~~lr~~~~~~----~--------~r------ 100 (388)
T PRK13705 41 RIGEAADLVGVSSQAIRDAEKAGRLPHPD--MEMRGRVEQRVGYTIEQINHMRDVFGTR----L--------RR------ 100 (388)
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCCCC--cCCCCcchhhcCcCHHHHHHHHHhhccc----c--------cc------
Confidence 4555555 699999999998888754321 1111123456788988877775543210 0 00
Q ss_pred ecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 154 TTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 154 sTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
..|...--|+-...--|+|||++|.++|...+. .+.+|+.||.
T Consensus 101 -----------~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~-------~G~rVLlID~ 143 (388)
T PRK13705 101 -----------AEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-------KGLRVLLVEG 143 (388)
T ss_pred -----------cCCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------cCCCeEEEcC
Confidence 133333445555666899999999999987653 5679999995
No 470
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.85 E-value=0.15 Score=47.44 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
++-++|--|+|||++|.++|...+. .+.+|+.||....
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~-------~G~~VlliD~D~q 39 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAE-------MGKKVMIVGCDPK 39 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHH-------CCCeEEEEeCCCC
Confidence 4567899999999999999988753 4678999997743
No 471
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.12 Score=48.51 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|.++-|.|++|+|||+|..-++-.
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988753
No 472
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.086 Score=49.51 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|.++-|.|++|+|||+|+.-++-
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999998874
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.84 E-value=0.094 Score=46.36 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.|.++-|.|++|+|||+|+..++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999998764
No 474
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.12 Score=48.99 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
=+..|+++-|.|++|+|||+|..-++-
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999998864
No 475
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.81 E-value=0.11 Score=47.92 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999999988653
No 476
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.81 E-value=0.1 Score=48.45 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|=+..|.++-|.|++|+|||+|..-++-.
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999987653
No 477
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.81 E-value=0.15 Score=40.18 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=28.4
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|+|++|+|||..++.++...... +...+++|+...
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~-----~~~~~~lv~~p~ 39 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDS-----LKGGQVLVLAPT 39 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhc-----ccCCCEEEEcCc
Confidence 5689999999999999988876531 245788888644
No 478
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.81 E-value=0.13 Score=51.25 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=33.6
Q ss_pred eecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 153 isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
-.+|...+|-++. +-.|.=..|+|++|+|||+|+..++.+..
T Consensus 117 ~~~~~RvID~l~P--iGkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 117 DDLSMRVVDLVAP--IGKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred cchhHhhhhheee--cCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678889998874 23566678999999999999999987653
No 479
>PRK14532 adenylate kinase; Provisional
Probab=92.80 E-value=0.097 Score=45.85 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.5
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
.-+.|+||||||++|..+|... ++.+|++..-+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~------------g~~~is~~d~l 35 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER------------GMVQLSTGDML 35 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc------------CCeEEeCcHHH
Confidence 4679999999999999998643 35778875433
No 480
>PRK06547 hypothetical protein; Provisional
Probab=92.78 E-value=0.099 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-.++-|.|++|||||+|+..++..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 347888999999999999999875
No 481
>KOG0989|consensus
Probab=92.77 E-value=0.1 Score=50.90 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.5
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+-.+.++||||+|||..++-+|...
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 345579999999999999999887754
No 482
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.77 E-value=0.36 Score=42.65 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=47.2
Q ss_pred cCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHH--------HHHHHHHHHHHHHHHhhcc-
Q psy13674 178 GEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIAS--------LVTLVGSRLPMSFHITRED- 248 (315)
Q Consensus 178 G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iae--------r~~lL~~~~~~L~~LA~e~- 248 (315)
|.+|||||+++..+|... ++-|||... |.|..-+..|.. |...|..+...+..++...
T Consensus 2 GVsG~GKStvg~~lA~~l------------g~~fidGDd-lHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~ 68 (161)
T COG3265 2 GVSGSGKSTVGSALAERL------------GAKFIDGDD-LHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK 68 (161)
T ss_pred CCCccCHHHHHHHHHHHc------------CCceecccc-cCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC
Confidence 889999999999998753 277999875 544326777765 4556888888888888777
Q ss_pred cEEEE
Q psy13674 249 LIVFF 253 (315)
Q Consensus 249 iaVV~ 253 (315)
..||+
T Consensus 69 ~~vi~ 73 (161)
T COG3265 69 HVVIA 73 (161)
T ss_pred ceEEe
Confidence 65553
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.77 E-value=0.072 Score=45.52 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.7
Q ss_pred EEecCCCCChhhHHHHHHHH
Q psy13674 175 EAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~ 194 (315)
-+.|++|||||+++..++..
T Consensus 2 ~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999865
No 484
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=92.76 E-value=0.16 Score=53.90 Aligned_cols=55 Identities=27% Similarity=0.216 Sum_probs=41.7
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT 232 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~~ 232 (315)
.|+ |-|+|++|+|||.|..-++..... .+..+++||-.++...-.|+..+++++|
T Consensus 180 ~gH-tlV~GtTGsGKT~l~~~li~q~i~-------~g~~vi~fDpkgD~el~~~~~~~~~~~G 234 (643)
T TIGR03754 180 VGH-TLVLGTTRVGKTRLAELLITQDIR-------RGDVVIVFDPKGDADLLKRMYAEAKRAG 234 (643)
T ss_pred cCc-eEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 344 779999999999999888776542 4568999999987655447777777653
No 485
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.76 E-value=0.093 Score=48.12 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|.++-|.|++|+|||+|..-++-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999988754
No 486
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.75 E-value=0.12 Score=51.25 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+..|+++-|.|++|||||+|...++-..
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 36789999999999999999999887543
No 487
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.73 E-value=0.096 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++.++|+||||||++|..++...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998753
No 488
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.72 E-value=0.091 Score=48.85 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999987653
No 489
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.72 E-value=0.13 Score=49.07 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887643
No 490
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.72 E-value=0.091 Score=49.17 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999988754
No 491
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.71 E-value=0.1 Score=47.04 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.8
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++-|.||+|+|||+|+..++..+
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 36899999999999999999987655
No 492
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=92.70 E-value=0.12 Score=50.40 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|+++-|.|++|||||+|+..++--
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3678999999999999999999988643
No 493
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.69 E-value=0.1 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
.||.|.+|-|.|.+|||||+|+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 58999999999999999999998763
No 494
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.69 E-value=0.13 Score=50.37 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|+|||+|..-++-.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999877654
No 495
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=92.69 E-value=0.093 Score=49.11 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+.+|+++-|.|++|+|||+|+.-++-.
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 5778999999999999999999988754
No 496
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=92.69 E-value=0.094 Score=48.96 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-+..|.++-|.|++|+|||+|+.-++-..
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46789999999999999999999887643
No 497
>PRK06217 hypothetical protein; Validated
Probab=92.68 E-value=0.12 Score=45.49 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
.+-|.|.+|||||+||..|+...-+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36789999999999999999875443
No 498
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.13 Score=48.62 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
=+..|+++-|.|++|+|||+|..-++-.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999988654
No 499
>PRK10536 hypothetical protein; Provisional
Probab=92.67 E-value=0.14 Score=48.69 Aligned_cols=37 Identities=27% Similarity=0.186 Sum_probs=28.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
..++-+.|++|||||.||..++....++ ..-..+||.
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~------~~~~kIiI~ 110 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIH------KDVDRIIVT 110 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc------CCeeEEEEe
Confidence 4699999999999999999999876542 234556664
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.67 E-value=0.28 Score=49.65 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.3
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
..|.++-+.|++|+|||+++..||..+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~ 216 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAV 216 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987643
Done!