Query psy13674
Match_columns 315
No_of_seqs 211 out of 2164
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:31:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lda_A DNA repair protein RAD5 100.0 1.1E-48 3.9E-53 383.9 25.1 248 66-315 73-397 (400)
2 1v5w_A DMC1, meiotic recombina 100.0 1.2E-46 4.2E-51 360.6 19.8 244 70-315 21-343 (343)
3 2z43_A DNA repair and recombin 100.0 8.1E-45 2.8E-49 344.6 19.0 246 66-315 4-324 (324)
4 2i1q_A DNA repair and recombin 100.0 4.8E-43 1.6E-47 330.3 23.1 235 74-312 3-322 (322)
5 1pzn_A RAD51, DNA repair and r 100.0 8.4E-43 2.9E-47 335.5 24.7 240 69-312 30-349 (349)
6 1n0w_A DNA repair protein RAD5 99.9 4.5E-26 1.6E-30 202.4 16.9 165 149-315 2-243 (243)
7 3cmu_A Protein RECA, recombina 99.9 4.1E-25 1.4E-29 249.2 10.5 205 101-313 655-944 (2050)
8 3hr8_A Protein RECA; alpha and 99.9 1.7E-24 6E-29 209.5 12.3 156 150-313 39-273 (356)
9 2zts_A Putative uncharacterize 99.9 2.3E-23 7.9E-28 185.0 13.6 155 148-311 7-243 (251)
10 4a74_A DNA repair and recombin 99.9 1.4E-22 4.8E-27 178.2 16.7 159 149-312 3-231 (231)
11 2cvh_A DNA repair and recombin 99.9 2E-22 6.7E-27 176.4 15.7 152 152-314 1-220 (220)
12 3io5_A Recombination and repai 99.9 3.3E-22 1.1E-26 191.5 14.5 156 149-313 3-244 (333)
13 1u94_A RECA protein, recombina 99.9 9.8E-22 3.3E-26 190.0 14.5 157 148-312 39-274 (356)
14 1xp8_A RECA protein, recombina 99.9 1.1E-21 3.9E-26 190.2 13.1 157 148-312 50-286 (366)
15 2zr9_A Protein RECA, recombina 99.9 1.6E-21 5.4E-26 187.7 12.1 157 148-312 37-272 (349)
16 1b22_A DNA repair protein RAD5 99.8 1.5E-21 5E-26 161.2 6.0 103 63-165 12-114 (114)
17 3cmu_A Protein RECA, recombina 99.8 1.1E-19 3.8E-24 205.3 13.2 162 142-311 3-244 (2050)
18 2dr3_A UPF0273 protein PH0284; 99.8 1.4E-18 4.8E-23 154.1 13.5 153 151-313 3-234 (247)
19 3cmw_A Protein RECA, recombina 99.8 3.6E-19 1.2E-23 199.1 10.8 157 148-312 359-594 (1706)
20 3cmw_A Protein RECA, recombina 99.8 2.6E-18 8.8E-23 192.3 13.9 193 110-311 1018-1292(1706)
21 1q57_A DNA primase/helicase; d 99.6 4.5E-15 1.6E-19 147.8 16.0 159 135-301 200-467 (503)
22 2w0m_A SSO2452; RECA, SSPF, un 99.6 3.7E-15 1.3E-19 130.2 13.1 154 151-312 3-229 (235)
23 2q6t_A DNAB replication FORK h 99.6 1.7E-14 5.7E-19 142.0 18.6 149 150-306 180-431 (444)
24 3bh0_A DNAB-like replicative h 99.6 1.5E-14 5.1E-19 136.4 16.9 148 149-305 47-298 (315)
25 2r6a_A DNAB helicase, replicat 99.5 6.3E-14 2.1E-18 138.3 14.3 150 150-306 183-432 (454)
26 3bgw_A DNAB-like replicative h 99.5 2.1E-13 7.2E-18 135.0 17.2 149 149-306 176-428 (444)
27 1tf7_A KAIC; homohexamer, hexa 99.5 2.3E-13 7.9E-18 136.5 15.3 153 149-311 259-478 (525)
28 2ehv_A Hypothetical protein PH 99.5 3.2E-13 1.1E-17 119.7 14.0 158 149-312 8-244 (251)
29 4a1f_A DNAB helicase, replicat 99.4 1.6E-12 5.6E-17 124.8 14.5 149 148-305 24-307 (338)
30 1cr0_A DNA primase/helicase; R 99.4 4.6E-12 1.6E-16 116.9 16.7 159 148-314 12-276 (296)
31 1nlf_A Regulatory protein REPA 99.4 4.1E-12 1.4E-16 116.7 11.7 162 151-313 11-262 (279)
32 3bs4_A Uncharacterized protein 99.2 3.9E-11 1.3E-15 111.5 12.3 58 152-216 2-59 (260)
33 2vhj_A Ntpase P4, P4; non- hyd 99.0 9.7E-11 3.3E-15 112.3 4.8 138 151-299 104-292 (331)
34 1tf7_A KAIC; homohexamer, hexa 98.9 9.4E-09 3.2E-13 103.0 14.4 63 148-216 16-78 (525)
35 2kz3_A Putative uncharacterize 98.8 1.8E-09 6.2E-14 84.2 4.4 66 82-147 10-75 (83)
36 1wcn_A Transcription elongatio 98.7 5.3E-08 1.8E-12 73.4 7.1 55 75-131 8-62 (70)
37 1u9l_A Transcription elongatio 98.6 7.9E-08 2.7E-12 72.5 5.8 53 81-133 11-63 (70)
38 1j8m_F SRP54, signal recogniti 97.5 0.00052 1.8E-08 64.2 10.3 117 89-221 11-140 (297)
39 3gfk_B DNA-directed RNA polyme 97.5 0.00015 5.1E-09 55.8 5.3 59 70-131 12-70 (79)
40 1z3e_B DNA-directed RNA polyme 97.5 0.00021 7.3E-09 54.1 6.1 56 73-131 8-63 (73)
41 3k4g_A DNA-directed RNA polyme 97.5 0.00029 1E-08 55.0 6.9 61 69-132 7-67 (86)
42 1c9k_A COBU, adenosylcobinamid 97.2 0.00029 9.8E-09 61.9 4.4 38 173-221 1-38 (180)
43 1coo_A RNA polymerase alpha su 97.1 0.0003 1E-08 56.2 3.8 57 72-131 22-78 (98)
44 3kl4_A SRP54, signal recogniti 96.9 0.0039 1.3E-07 61.5 10.6 118 88-221 9-139 (433)
45 3dm5_A SRP54, signal recogniti 96.8 0.045 1.5E-06 54.1 17.2 43 171-221 100-142 (443)
46 4a8j_A Elongator complex prote 96.8 0.00068 2.3E-08 65.6 3.4 37 150-189 18-55 (361)
47 1vma_A Cell division protein F 96.7 0.007 2.4E-07 56.8 9.9 45 169-221 102-146 (306)
48 3bos_A Putative DNA replicatio 96.6 0.0018 6.1E-08 55.8 4.5 27 170-196 51-77 (242)
49 1zp6_A Hypothetical protein AT 96.6 0.0019 6.4E-08 54.5 4.6 39 167-215 5-43 (191)
50 4b4t_K 26S protease regulatory 96.5 0.0088 3E-07 58.9 9.5 30 167-196 202-231 (428)
51 3e70_C DPA, signal recognition 96.4 0.015 5.2E-07 55.0 10.4 44 169-220 127-170 (328)
52 4b4t_L 26S protease subunit RP 96.4 0.0061 2.1E-07 60.2 7.7 32 167-198 211-242 (437)
53 4b4t_J 26S protease regulatory 96.4 0.0095 3.2E-07 58.4 8.7 32 167-198 178-209 (405)
54 3b9q_A Chloroplast SRP recepto 96.3 0.033 1.1E-06 51.9 11.8 45 168-220 97-141 (302)
55 3tqc_A Pantothenate kinase; bi 96.3 0.014 4.8E-07 55.3 9.1 98 105-220 34-136 (321)
56 1zu4_A FTSY; GTPase, signal re 96.3 0.023 7.8E-07 53.5 10.5 45 168-220 102-146 (320)
57 2px0_A Flagellar biosynthesis 96.2 0.02 7E-07 53.2 9.8 45 170-221 104-148 (296)
58 2og2_A Putative signal recogni 96.2 0.034 1.2E-06 53.4 11.6 88 113-220 98-198 (359)
59 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0087 3E-07 55.9 6.6 32 164-195 38-69 (322)
60 2b8t_A Thymidine kinase; deoxy 96.1 0.0041 1.4E-07 56.0 4.1 38 169-213 10-47 (223)
61 2orw_A Thymidine kinase; TMTK, 96.0 0.0044 1.5E-07 53.5 4.0 37 170-213 2-38 (184)
62 1rj9_A FTSY, signal recognitio 96.0 0.0074 2.5E-07 56.5 5.6 43 170-220 101-143 (304)
63 2chg_A Replication factor C sm 96.0 0.015 5.2E-07 48.6 7.0 41 174-219 41-81 (226)
64 2yhs_A FTSY, cell division pro 95.9 0.049 1.7E-06 54.8 11.6 87 114-220 237-334 (503)
65 1kgd_A CASK, peripheral plasma 95.9 0.0043 1.5E-07 52.6 3.4 29 167-195 1-29 (180)
66 1u0j_A DNA replication protein 95.9 0.032 1.1E-06 51.7 9.4 107 87-195 3-128 (267)
67 1gvn_B Zeta; postsegregational 95.9 0.0093 3.2E-07 55.0 5.7 36 170-215 32-67 (287)
68 1fnn_A CDC6P, cell division co 95.9 0.025 8.4E-07 52.4 8.5 50 173-229 46-96 (389)
69 3h4m_A Proteasome-activating n 95.8 0.01 3.5E-07 53.3 5.6 29 167-195 47-75 (285)
70 3ec2_A DNA replication protein 95.8 0.0046 1.6E-07 52.0 3.1 42 168-215 35-76 (180)
71 2kjq_A DNAA-related protein; s 95.8 0.011 3.9E-07 49.2 5.4 40 170-216 35-74 (149)
72 2rhm_A Putative kinase; P-loop 95.8 0.0057 1.9E-07 51.4 3.5 28 167-194 1-28 (193)
73 1tue_A Replication protein E1; 95.7 0.0051 1.7E-07 55.4 3.0 44 150-195 39-82 (212)
74 3cf0_A Transitional endoplasmi 95.7 0.0071 2.4E-07 55.6 4.0 29 167-195 45-73 (301)
75 2w58_A DNAI, primosome compone 95.6 0.0083 2.8E-07 51.1 3.9 37 172-215 55-91 (202)
76 2yvu_A Probable adenylyl-sulfa 95.6 0.0095 3.3E-07 50.3 4.2 40 169-215 11-50 (186)
77 2j41_A Guanylate kinase; GMP, 95.6 0.007 2.4E-07 51.4 3.4 27 168-194 3-29 (207)
78 2xxa_A Signal recognition part 95.5 0.016 5.5E-07 56.9 6.2 43 171-221 100-143 (433)
79 3uie_A Adenylyl-sulfate kinase 95.5 0.011 3.7E-07 50.8 4.3 40 169-215 23-62 (200)
80 3tr0_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 50.9 3.3 26 169-194 5-30 (205)
81 2dpy_A FLII, flagellum-specifi 95.4 0.022 7.4E-07 56.1 6.7 44 150-195 138-181 (438)
82 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.01 3.5E-07 52.3 3.9 30 167-196 35-64 (262)
83 4b4t_M 26S protease regulatory 95.4 0.0084 2.9E-07 59.2 3.7 31 167-197 211-241 (434)
84 4gp7_A Metallophosphoesterase; 95.4 0.0059 2E-07 51.5 2.2 23 168-190 6-28 (171)
85 3uk6_A RUVB-like 2; hexameric 95.4 0.01 3.5E-07 55.2 4.0 34 163-196 62-95 (368)
86 3ice_A Transcription terminati 95.4 0.0094 3.2E-07 58.6 3.8 43 151-195 156-198 (422)
87 3t15_A Ribulose bisphosphate c 95.4 0.011 3.7E-07 54.5 4.0 29 167-195 32-60 (293)
88 2ffh_A Protein (FFH); SRP54, s 95.4 0.12 4.2E-06 50.7 11.8 44 170-221 97-140 (425)
89 3eie_A Vacuolar protein sortin 95.4 0.016 5.5E-07 53.7 5.2 31 166-196 46-76 (322)
90 1znw_A Guanylate kinase, GMP k 95.4 0.0089 3.1E-07 51.7 3.3 29 167-195 16-44 (207)
91 2obl_A ESCN; ATPase, hydrolase 95.3 0.022 7.5E-07 54.3 6.2 44 150-195 52-95 (347)
92 2v1u_A Cell division control p 95.3 0.036 1.2E-06 51.0 7.5 51 170-221 43-93 (387)
93 1sxj_B Activator 1 37 kDa subu 95.3 0.016 5.5E-07 52.2 4.9 43 174-221 45-87 (323)
94 1sky_E F1-ATPase, F1-ATP synth 95.3 0.013 4.3E-07 58.6 4.5 48 147-196 129-176 (473)
95 3te6_A Regulatory protein SIR3 95.2 0.032 1.1E-06 52.8 6.7 70 160-231 36-105 (318)
96 2j37_W Signal recognition part 95.1 0.029 9.8E-07 56.3 6.5 56 158-221 81-143 (504)
97 3tui_C Methionine import ATP-b 95.1 0.025 8.4E-07 54.7 5.8 27 167-193 50-76 (366)
98 3vaa_A Shikimate kinase, SK; s 95.1 0.012 4.1E-07 50.5 3.2 28 168-195 22-49 (199)
99 2qe7_A ATP synthase subunit al 95.0 0.072 2.5E-06 53.5 9.2 49 146-196 139-187 (502)
100 3c8u_A Fructokinase; YP_612366 95.0 0.013 4.6E-07 50.6 3.4 28 168-195 19-46 (208)
101 3aez_A Pantothenate kinase; tr 95.0 0.051 1.8E-06 50.8 7.6 49 168-221 87-135 (312)
102 1l8q_A Chromosomal replication 95.0 0.02 7E-07 52.6 4.7 39 170-215 36-74 (324)
103 1qhx_A CPT, protein (chloramph 94.9 0.018 6.3E-07 47.7 3.9 25 171-195 3-27 (178)
104 1rz3_A Hypothetical protein rb 94.9 0.027 9.2E-07 48.5 5.0 42 168-216 19-60 (201)
105 1z6g_A Guanylate kinase; struc 94.9 0.012 4.2E-07 51.7 2.8 28 167-194 19-46 (218)
106 2v3c_C SRP54, signal recogniti 94.9 0.016 5.4E-07 57.0 3.9 86 114-215 39-136 (432)
107 2p65_A Hypothetical protein PF 94.9 0.019 6.6E-07 47.0 3.9 44 172-215 44-87 (187)
108 3b9p_A CG5977-PA, isoform A; A 94.9 0.033 1.1E-06 50.2 5.8 26 170-195 53-78 (297)
109 3oaa_A ATP synthase subunit al 94.9 0.1 3.4E-06 52.6 9.7 48 146-195 139-186 (513)
110 1nks_A Adenylate kinase; therm 94.9 0.02 7E-07 47.6 4.0 35 173-214 3-37 (194)
111 3tau_A Guanylate kinase, GMP k 94.9 0.015 5.2E-07 50.4 3.3 26 169-194 6-31 (208)
112 2ck3_A ATP synthase subunit al 94.9 0.065 2.2E-06 54.0 8.3 46 148-195 141-186 (510)
113 1ly1_A Polynucleotide kinase; 94.9 0.014 4.9E-07 48.1 3.0 22 172-193 3-24 (181)
114 1jbk_A CLPB protein; beta barr 94.9 0.024 8.4E-07 46.2 4.4 42 171-215 43-87 (195)
115 4eun_A Thermoresistant glucoki 94.8 0.015 5.3E-07 49.8 3.2 36 169-216 27-62 (200)
116 3syl_A Protein CBBX; photosynt 94.8 0.021 7.1E-07 51.7 4.1 43 170-215 66-108 (309)
117 3cf2_A TER ATPase, transitiona 94.8 0.084 2.9E-06 55.9 9.2 30 167-196 234-263 (806)
118 2pez_A Bifunctional 3'-phospho 94.8 0.017 5.7E-07 48.4 3.2 39 169-214 3-41 (179)
119 3tif_A Uncharacterized ABC tra 94.8 0.016 5.5E-07 51.9 3.3 27 167-193 27-53 (235)
120 3gqb_B V-type ATP synthase bet 94.7 0.085 2.9E-06 52.5 8.7 50 146-197 124-173 (464)
121 1knq_A Gluconate kinase; ALFA/ 94.7 0.018 6.1E-07 47.9 3.3 26 169-194 6-31 (175)
122 1kht_A Adenylate kinase; phosp 94.7 0.017 5.7E-07 48.2 3.1 25 171-195 3-27 (192)
123 4fcw_A Chaperone protein CLPB; 94.7 0.023 8E-07 51.3 4.3 39 171-216 47-85 (311)
124 2bdt_A BH3686; alpha-beta prot 94.7 0.016 5.5E-07 48.9 2.9 23 171-193 2-24 (189)
125 2zan_A Vacuolar protein sortin 94.7 0.028 9.6E-07 54.9 5.0 30 166-195 162-191 (444)
126 1sxj_D Activator 1 41 kDa subu 94.6 0.03 1E-06 51.3 4.8 39 174-216 61-99 (353)
127 4b4t_I 26S protease regulatory 94.6 0.02 6.9E-07 56.6 3.7 32 166-197 211-242 (437)
128 1kag_A SKI, shikimate kinase I 94.6 0.017 5.7E-07 47.7 2.7 24 171-194 4-27 (173)
129 2qt1_A Nicotinamide riboside k 94.6 0.021 7E-07 49.0 3.3 28 167-194 17-44 (207)
130 1htw_A HI0065; nucleotide-bind 94.5 0.023 7.7E-07 48.1 3.5 29 167-195 29-57 (158)
131 2qby_B CDC6 homolog 3, cell di 94.5 0.029 1E-06 52.0 4.6 45 172-216 46-91 (384)
132 2qp9_X Vacuolar protein sortin 94.5 0.023 7.8E-07 53.8 3.8 32 166-197 79-110 (355)
133 4b4t_H 26S protease regulatory 94.5 0.02 6.9E-07 57.1 3.5 32 167-198 239-270 (467)
134 2qor_A Guanylate kinase; phosp 94.5 0.019 6.6E-07 49.4 3.0 28 168-195 9-36 (204)
135 2bjv_A PSP operon transcriptio 94.5 0.032 1.1E-06 49.6 4.6 38 172-216 30-67 (265)
136 3lnc_A Guanylate kinase, GMP k 94.5 0.015 5E-07 51.0 2.3 25 168-192 24-48 (231)
137 2p5t_B PEZT; postsegregational 94.5 0.022 7.4E-07 51.0 3.4 37 169-215 30-66 (253)
138 3lw7_A Adenylate kinase relate 94.5 0.02 6.8E-07 46.4 2.9 20 172-191 2-21 (179)
139 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.1E-07 47.7 3.0 25 170-194 3-27 (186)
140 3kb2_A SPBC2 prophage-derived 94.4 0.025 8.4E-07 46.3 3.4 23 173-195 3-25 (173)
141 1s96_A Guanylate kinase, GMP k 94.4 0.022 7.4E-07 50.6 3.2 29 167-195 12-40 (219)
142 1lv7_A FTSH; alpha/beta domain 94.4 0.027 9.3E-07 49.9 3.8 22 174-195 48-69 (257)
143 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.9E-07 51.7 3.0 27 167-193 31-57 (247)
144 2v9p_A Replication protein E1; 94.4 0.023 7.9E-07 53.4 3.5 28 167-194 122-149 (305)
145 3gfo_A Cobalt import ATP-bindi 94.4 0.02 6.9E-07 52.8 3.0 27 167-193 30-56 (275)
146 1ls1_A Signal recognition part 94.3 0.033 1.1E-06 51.6 4.4 44 170-221 97-140 (295)
147 3pfi_A Holliday junction ATP-d 94.3 0.06 2E-06 49.4 6.1 23 174-196 58-80 (338)
148 2ck3_D ATP synthase subunit be 94.3 0.055 1.9E-06 54.2 6.2 46 149-196 133-178 (482)
149 1fx0_B ATP synthase beta chain 94.3 0.052 1.8E-06 54.5 6.0 46 149-196 145-190 (498)
150 2x8a_A Nuclear valosin-contain 94.3 0.022 7.6E-07 52.0 3.0 37 168-216 43-79 (274)
151 1vq8_Y 50S ribosomal protein L 94.2 0.008 2.7E-07 55.0 0.0 64 66-131 7-70 (241)
152 3asz_A Uridine kinase; cytidin 94.2 0.025 8.4E-07 48.5 3.1 39 169-217 4-42 (211)
153 1lvg_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 49.3 2.6 26 169-194 2-27 (198)
154 1ixz_A ATP-dependent metallopr 94.2 0.024 8.1E-07 50.2 3.0 26 168-195 48-73 (254)
155 2pcj_A ABC transporter, lipopr 94.2 0.017 5.9E-07 51.3 2.1 26 167-192 26-51 (224)
156 2eyu_A Twitching motility prot 94.2 0.034 1.2E-06 50.7 4.1 34 158-194 15-48 (261)
157 1g6h_A High-affinity branched- 94.2 0.023 7.9E-07 51.5 3.0 27 167-193 29-55 (257)
158 2r62_A Cell division protease 94.2 0.017 5.8E-07 51.4 2.0 24 174-197 47-70 (268)
159 2ixe_A Antigen peptide transpo 94.2 0.026 8.9E-07 51.7 3.3 27 167-193 41-67 (271)
160 3n70_A Transport activator; si 94.2 0.036 1.2E-06 45.3 3.8 23 173-195 26-48 (145)
161 1njg_A DNA polymerase III subu 94.1 0.03 1E-06 47.2 3.4 24 172-195 46-69 (250)
162 2c9o_A RUVB-like 1; hexameric 94.1 0.052 1.8E-06 53.0 5.6 29 167-195 59-87 (456)
163 2r9v_A ATP synthase subunit al 94.1 0.039 1.3E-06 55.6 4.7 49 145-195 151-199 (515)
164 2plr_A DTMP kinase, probable t 94.1 0.028 9.6E-07 47.5 3.2 26 170-195 3-28 (213)
165 2jeo_A Uridine-cytidine kinase 94.1 0.029 9.8E-07 49.8 3.3 48 167-216 21-68 (245)
166 2cbz_A Multidrug resistance-as 94.1 0.022 7.5E-07 51.1 2.6 27 167-193 27-53 (237)
167 2fna_A Conserved hypothetical 94.1 0.051 1.8E-06 49.3 5.1 35 172-216 31-65 (357)
168 4g1u_C Hemin import ATP-bindin 94.1 0.025 8.5E-07 51.8 2.9 27 167-193 33-59 (266)
169 2olj_A Amino acid ABC transpor 94.1 0.027 9.4E-07 51.5 3.2 27 167-193 46-72 (263)
170 2pze_A Cystic fibrosis transme 94.1 0.028 9.5E-07 50.1 3.2 49 167-218 30-80 (229)
171 1sq5_A Pantothenate kinase; P- 94.1 0.048 1.7E-06 50.5 4.9 44 168-217 77-121 (308)
172 1tev_A UMP-CMP kinase; ploop, 94.0 0.029 9.9E-07 46.7 3.1 24 171-194 3-26 (196)
173 1ofh_A ATP-dependent HSL prote 94.0 0.04 1.4E-06 49.4 4.1 33 173-215 52-84 (310)
174 1w5s_A Origin recognition comp 94.0 0.085 2.9E-06 49.2 6.5 60 170-230 49-110 (412)
175 1d2n_A N-ethylmaleimide-sensit 94.0 0.045 1.5E-06 49.0 4.4 28 168-195 61-88 (272)
176 1svm_A Large T antigen; AAA+ f 94.0 0.032 1.1E-06 53.9 3.6 28 167-194 165-192 (377)
177 2vli_A Antibiotic resistance p 94.0 0.034 1.2E-06 46.2 3.3 26 170-195 4-29 (183)
178 2yz2_A Putative ABC transporte 93.9 0.031 1E-06 51.0 3.3 27 167-193 29-55 (266)
179 2qby_A CDC6 homolog 1, cell di 93.9 0.03 1E-06 51.4 3.2 42 170-215 44-85 (386)
180 2r2a_A Uncharacterized protein 93.9 0.053 1.8E-06 47.6 4.6 25 171-195 5-29 (199)
181 1b0u_A Histidine permease; ABC 93.9 0.025 8.5E-07 51.6 2.6 27 167-193 28-54 (262)
182 2d2e_A SUFC protein; ABC-ATPas 93.9 0.027 9.4E-07 50.8 2.8 27 167-193 25-51 (250)
183 1y63_A LMAJ004144AAA protein; 93.9 0.037 1.3E-06 46.8 3.5 26 169-194 8-33 (184)
184 1sxj_A Activator 1 95 kDa subu 93.9 0.094 3.2E-06 52.0 6.9 38 169-216 75-112 (516)
185 3trf_A Shikimate kinase, SK; a 93.9 0.034 1.2E-06 46.5 3.2 25 171-195 5-29 (185)
186 2zu0_C Probable ATP-dependent 93.9 0.03 1E-06 51.1 3.1 27 167-193 42-68 (267)
187 3cf2_A TER ATPase, transitiona 93.8 0.034 1.2E-06 58.9 3.8 87 166-253 506-621 (806)
188 1ji0_A ABC transporter; ATP bi 93.8 0.024 8.2E-07 50.9 2.3 27 167-193 28-54 (240)
189 1xx6_A Thymidine kinase; NESG, 93.8 0.046 1.6E-06 47.8 4.0 37 169-212 6-42 (191)
190 2c95_A Adenylate kinase 1; tra 93.8 0.035 1.2E-06 46.5 3.2 26 170-195 8-33 (196)
191 3a00_A Guanylate kinase, GMP k 93.8 0.029 1E-06 47.6 2.7 25 171-195 1-25 (186)
192 2c61_A A-type ATP synthase non 93.8 0.049 1.7E-06 54.3 4.7 48 148-197 131-178 (469)
193 1mv5_A LMRA, multidrug resista 93.8 0.026 9E-07 50.6 2.5 27 167-193 24-50 (243)
194 2qgz_A Helicase loader, putati 93.8 0.046 1.6E-06 50.8 4.2 38 171-214 152-189 (308)
195 1m7g_A Adenylylsulfate kinase; 93.8 0.039 1.3E-06 47.6 3.5 41 168-214 22-62 (211)
196 2z4s_A Chromosomal replication 93.7 0.026 9E-07 55.1 2.6 40 171-215 130-169 (440)
197 2qen_A Walker-type ATPase; unk 93.7 0.054 1.8E-06 49.1 4.5 33 172-216 32-64 (350)
198 3b85_A Phosphate starvation-in 93.7 0.019 6.7E-07 50.6 1.5 27 168-194 19-45 (208)
199 3end_A Light-independent proto 93.7 0.047 1.6E-06 49.9 4.0 40 170-216 40-79 (307)
200 3u61_B DNA polymerase accessor 93.7 0.11 3.9E-06 47.4 6.6 34 172-215 49-82 (324)
201 3iij_A Coilin-interacting nucl 93.7 0.037 1.3E-06 46.2 3.1 26 170-195 10-35 (180)
202 3vr4_A V-type sodium ATPase ca 93.6 0.085 2.9E-06 54.0 6.2 46 148-195 211-256 (600)
203 2cdn_A Adenylate kinase; phosp 93.6 0.05 1.7E-06 46.3 3.8 26 170-195 19-44 (201)
204 1vpl_A ABC transporter, ATP-bi 93.6 0.03 1E-06 51.0 2.6 27 167-193 37-63 (256)
205 3t61_A Gluconokinase; PSI-biol 93.6 0.034 1.1E-06 47.5 2.7 24 171-194 18-41 (202)
206 1hqc_A RUVB; extended AAA-ATPa 93.6 0.11 3.7E-06 47.1 6.3 24 172-195 39-62 (324)
207 2bwj_A Adenylate kinase 5; pho 93.6 0.038 1.3E-06 46.4 3.0 26 170-195 11-36 (199)
208 2ghi_A Transport protein; mult 93.6 0.031 1.1E-06 50.8 2.6 28 167-194 42-69 (260)
209 3sr0_A Adenylate kinase; phosp 93.6 0.039 1.3E-06 48.6 3.2 33 172-216 1-33 (206)
210 2ze6_A Isopentenyl transferase 93.6 0.04 1.4E-06 49.6 3.3 24 172-195 2-25 (253)
211 3l0o_A Transcription terminati 93.5 0.045 1.5E-06 53.9 3.8 43 151-195 157-199 (427)
212 2wwf_A Thymidilate kinase, put 93.5 0.041 1.4E-06 46.8 3.2 27 169-195 8-34 (212)
213 4ag6_A VIRB4 ATPase, type IV s 93.5 0.074 2.5E-06 50.4 5.3 42 169-217 33-74 (392)
214 2bbw_A Adenylate kinase 4, AK4 93.5 0.039 1.3E-06 48.8 3.1 25 171-195 27-51 (246)
215 1zd8_A GTP:AMP phosphotransfer 93.5 0.038 1.3E-06 48.2 3.0 26 169-194 5-30 (227)
216 1sgw_A Putative ABC transporte 93.5 0.026 8.8E-07 50.2 1.8 27 167-193 31-57 (214)
217 1qde_A EIF4A, translation init 93.5 0.22 7.4E-06 42.7 7.7 29 71-99 8-36 (224)
218 3umf_A Adenylate kinase; rossm 93.5 0.047 1.6E-06 48.7 3.6 30 166-195 24-53 (217)
219 3vfd_A Spastin; ATPase, microt 93.5 0.074 2.5E-06 50.5 5.1 26 170-195 147-172 (389)
220 3d8b_A Fidgetin-like protein 1 93.5 0.067 2.3E-06 50.4 4.8 26 170-195 116-141 (357)
221 1iy2_A ATP-dependent metallopr 93.4 0.04 1.4E-06 49.7 3.0 26 168-195 72-97 (278)
222 2r8r_A Sensor protein; KDPD, P 93.4 0.06 2.1E-06 48.8 4.2 36 174-216 9-44 (228)
223 1fx0_A ATP synthase alpha chai 93.4 0.043 1.5E-06 55.2 3.5 47 148-196 142-188 (507)
224 3co5_A Putative two-component 93.4 0.059 2E-06 43.9 3.8 47 174-221 30-90 (143)
225 2gno_A DNA polymerase III, gam 93.4 0.15 5.1E-06 47.5 7.0 54 171-229 18-72 (305)
226 1nn5_A Similar to deoxythymidy 93.4 0.047 1.6E-06 46.4 3.2 26 170-195 8-33 (215)
227 3fvq_A Fe(3+) IONS import ATP- 93.3 0.048 1.7E-06 52.4 3.7 27 167-193 26-52 (359)
228 2v54_A DTMP kinase, thymidylat 93.3 0.05 1.7E-06 45.9 3.2 25 170-194 3-27 (204)
229 2qi9_C Vitamin B12 import ATP- 93.3 0.034 1.2E-06 50.5 2.3 27 167-193 22-48 (249)
230 2nq2_C Hypothetical ABC transp 93.2 0.034 1.2E-06 50.4 2.3 27 167-193 27-53 (253)
231 1aky_A Adenylate kinase; ATP:A 93.2 0.055 1.9E-06 46.8 3.5 26 170-195 3-28 (220)
232 3rlf_A Maltose/maltodextrin im 93.2 0.053 1.8E-06 52.6 3.8 27 167-193 25-51 (381)
233 3vr4_D V-type sodium ATPase su 93.2 0.067 2.3E-06 53.3 4.4 49 147-197 129-177 (465)
234 2iyv_A Shikimate kinase, SK; t 93.2 0.05 1.7E-06 45.5 3.1 24 172-195 3-26 (184)
235 2ihy_A ABC transporter, ATP-bi 93.1 0.035 1.2E-06 51.2 2.3 27 167-193 43-69 (279)
236 1qf9_A UMP/CMP kinase, protein 93.1 0.051 1.7E-06 45.1 3.0 24 171-194 6-29 (194)
237 2a5y_B CED-4; apoptosis; HET: 93.1 0.14 4.9E-06 50.9 6.7 100 170-279 151-271 (549)
238 3gqb_A V-type ATP synthase alp 93.0 0.084 2.9E-06 53.8 5.0 46 148-195 200-245 (578)
239 2jaq_A Deoxyguanosine kinase; 93.0 0.053 1.8E-06 45.5 3.0 23 173-195 2-24 (205)
240 3be4_A Adenylate kinase; malar 93.0 0.054 1.9E-06 47.0 3.1 27 169-195 3-29 (217)
241 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.054 1.9E-06 48.7 3.2 25 170-194 3-27 (260)
242 1um8_A ATP-dependent CLP prote 93.0 0.077 2.6E-06 49.9 4.4 26 170-195 71-96 (376)
243 3hu3_A Transitional endoplasmi 92.9 0.096 3.3E-06 52.1 5.2 29 167-195 234-262 (489)
244 1ihu_A Arsenical pump-driving 92.9 0.057 1.9E-06 54.3 3.6 51 158-215 313-364 (589)
245 2gza_A Type IV secretion syste 92.9 0.054 1.9E-06 51.5 3.3 27 168-194 172-198 (361)
246 3lu0_A DNA-directed RNA polyme 92.9 0.018 6.3E-07 54.9 0.0 57 72-131 253-309 (329)
247 3mfy_A V-type ATP synthase alp 92.9 0.07 2.4E-06 54.5 4.2 46 148-195 206-251 (588)
248 3nh6_A ATP-binding cassette SU 92.9 0.038 1.3E-06 51.8 2.1 27 167-193 76-102 (306)
249 1iqp_A RFCS; clamp loader, ext 92.9 0.055 1.9E-06 48.8 3.1 22 174-195 49-70 (327)
250 1sxj_C Activator 1 40 kDa subu 92.8 0.067 2.3E-06 49.6 3.7 22 174-195 49-70 (340)
251 1via_A Shikimate kinase; struc 92.8 0.052 1.8E-06 45.2 2.6 23 173-195 6-28 (175)
252 2j9r_A Thymidine kinase; TK1, 92.8 0.081 2.8E-06 47.5 4.0 38 169-213 26-63 (214)
253 3la6_A Tyrosine-protein kinase 92.8 0.14 4.8E-06 47.1 5.8 38 172-216 94-131 (286)
254 1yrb_A ATP(GTP)binding protein 92.7 0.13 4.6E-06 45.1 5.4 39 170-216 13-51 (262)
255 2chq_A Replication factor C sm 92.7 0.089 3E-06 47.2 4.3 38 174-216 41-78 (319)
256 1vt4_I APAF-1 related killer D 92.7 0.2 6.9E-06 55.0 7.6 54 171-229 150-204 (1221)
257 1uj2_A Uridine-cytidine kinase 92.7 0.091 3.1E-06 46.7 4.3 46 172-219 23-68 (252)
258 1ukz_A Uridylate kinase; trans 92.7 0.069 2.4E-06 45.3 3.3 24 171-194 15-38 (203)
259 1in4_A RUVB, holliday junction 92.6 0.052 1.8E-06 50.6 2.6 24 172-195 52-75 (334)
260 3eiq_A Eukaryotic initiation f 92.6 0.4 1.4E-05 44.5 8.7 31 69-99 32-62 (414)
261 2pbr_A DTMP kinase, thymidylat 92.6 0.067 2.3E-06 44.5 3.1 23 173-195 2-24 (195)
262 3ney_A 55 kDa erythrocyte memb 92.6 0.07 2.4E-06 47.0 3.3 26 170-195 18-43 (197)
263 3fb4_A Adenylate kinase; psych 92.6 0.079 2.7E-06 45.4 3.6 23 173-195 2-24 (216)
264 2woj_A ATPase GET3; tail-ancho 92.6 0.13 4.4E-06 48.9 5.3 50 158-216 7-58 (354)
265 3hws_A ATP-dependent CLP prote 92.5 0.075 2.6E-06 49.8 3.6 26 170-195 50-75 (363)
266 3ez9_A Para; DNA binding, wing 92.5 0.13 4.6E-06 49.0 5.4 99 106-216 44-156 (403)
267 3im1_A Protein SNU246, PRE-mRN 92.5 0.31 1.1E-05 45.6 7.9 50 82-131 163-212 (328)
268 1e6c_A Shikimate kinase; phosp 92.5 0.064 2.2E-06 44.1 2.7 23 172-194 3-25 (173)
269 2it1_A 362AA long hypothetical 92.4 0.064 2.2E-06 51.5 3.1 27 167-193 25-51 (362)
270 3dl0_A Adenylate kinase; phosp 92.4 0.09 3.1E-06 45.1 3.8 23 173-195 2-24 (216)
271 4e22_A Cytidylate kinase; P-lo 92.4 0.074 2.5E-06 47.6 3.3 26 169-194 25-50 (252)
272 2yyz_A Sugar ABC transporter, 92.4 0.065 2.2E-06 51.4 3.1 27 167-193 25-51 (359)
273 1zak_A Adenylate kinase; ATP:A 92.4 0.072 2.5E-06 46.1 3.1 26 170-195 4-29 (222)
274 2bbs_A Cystic fibrosis transme 92.4 0.054 1.9E-06 50.3 2.5 49 167-218 60-110 (290)
275 1z47_A CYSA, putative ABC-tran 92.4 0.061 2.1E-06 51.6 2.8 27 167-193 37-63 (355)
276 1cke_A CK, MSSA, protein (cyti 92.3 0.076 2.6E-06 45.7 3.2 25 171-195 5-29 (227)
277 2r44_A Uncharacterized protein 92.3 0.12 4.2E-06 47.4 4.7 24 172-195 47-70 (331)
278 1ye8_A Protein THEP1, hypothet 92.3 0.076 2.6E-06 45.4 3.1 23 173-195 2-24 (178)
279 3kta_A Chromosome segregation 92.2 0.086 2.9E-06 43.9 3.3 24 169-193 25-48 (182)
280 1z6t_A APAF-1, apoptotic prote 92.2 0.099 3.4E-06 51.8 4.3 55 159-216 135-189 (591)
281 1w4r_A Thymidine kinase; type 92.2 0.1 3.5E-06 46.2 3.9 39 170-215 19-57 (195)
282 3fht_A ATP-dependent RNA helic 92.2 0.45 1.5E-05 44.0 8.5 82 74-214 22-103 (412)
283 3tlx_A Adenylate kinase 2; str 92.2 0.083 2.8E-06 47.0 3.3 26 170-195 28-53 (243)
284 1v43_A Sugar-binding transport 92.1 0.073 2.5E-06 51.3 3.1 27 167-193 33-59 (372)
285 1g29_1 MALK, maltose transport 92.1 0.067 2.3E-06 51.5 2.8 27 167-193 25-51 (372)
286 2pjz_A Hypothetical protein ST 92.1 0.063 2.2E-06 49.1 2.5 26 167-193 27-52 (263)
287 2onk_A Molybdate/tungstate ABC 92.1 0.077 2.6E-06 47.7 3.0 26 167-193 21-46 (240)
288 3sfz_A APAF-1, apoptotic pepti 92.1 0.3 1E-05 51.8 8.0 59 159-220 135-193 (1249)
289 2a1j_A DNA repair endonuclease 92.1 0.25 8.7E-06 35.6 5.3 53 75-130 2-56 (63)
290 1cp2_A CP2, nitrogenase iron p 92.1 0.15 5.2E-06 45.1 4.9 38 173-217 3-40 (269)
291 1zuh_A Shikimate kinase; alpha 92.1 0.1 3.5E-06 42.9 3.5 24 172-195 8-31 (168)
292 2pt5_A Shikimate kinase, SK; a 92.1 0.086 2.9E-06 43.1 3.0 22 173-194 2-23 (168)
293 1jjv_A Dephospho-COA kinase; P 92.0 0.083 2.9E-06 45.0 3.0 21 173-193 4-24 (206)
294 2z0h_A DTMP kinase, thymidylat 92.0 0.089 3E-06 44.0 3.1 23 173-195 2-24 (197)
295 3iqw_A Tail-anchored protein t 92.0 0.17 6E-06 47.8 5.4 48 159-215 6-53 (334)
296 2ewv_A Twitching motility prot 92.0 0.11 3.8E-06 49.7 4.1 28 168-195 133-160 (372)
297 3d31_A Sulfate/molybdate ABC t 91.9 0.055 1.9E-06 51.7 1.9 27 167-193 22-48 (348)
298 1ojl_A Transcriptional regulat 91.9 0.11 3.8E-06 48.0 3.9 38 171-215 25-62 (304)
299 3b5x_A Lipid A export ATP-bind 91.9 0.1 3.6E-06 52.5 4.0 28 167-194 365-392 (582)
300 3ez2_A Plasmid partition prote 91.8 0.25 8.4E-06 47.0 6.4 99 106-216 41-153 (398)
301 3ea0_A ATPase, para family; al 91.8 0.19 6.6E-06 43.5 5.2 38 173-217 7-45 (245)
302 4dzz_A Plasmid partitioning pr 91.8 0.12 4E-06 43.6 3.6 68 176-254 7-83 (206)
303 4eaq_A DTMP kinase, thymidylat 91.7 0.11 3.6E-06 46.2 3.4 29 167-195 22-50 (229)
304 2qmh_A HPR kinase/phosphorylas 91.7 0.095 3.3E-06 46.8 3.1 24 171-194 34-57 (205)
305 2i3b_A HCR-ntpase, human cance 91.7 0.084 2.9E-06 45.8 2.7 25 171-195 1-25 (189)
306 1g8p_A Magnesium-chelatase 38 91.7 0.071 2.4E-06 48.8 2.3 22 174-195 48-69 (350)
307 2if2_A Dephospho-COA kinase; a 91.7 0.092 3.1E-06 44.6 2.9 21 173-193 3-23 (204)
308 3kjh_A CO dehydrogenase/acetyl 91.6 0.13 4.3E-06 44.5 3.8 34 176-216 5-38 (254)
309 1a5t_A Delta prime, HOLB; zinc 91.6 0.34 1.2E-05 45.0 7.0 26 171-196 24-49 (334)
310 3gd7_A Fusion complex of cysti 91.6 0.088 3E-06 51.1 3.0 27 167-193 43-69 (390)
311 2ce7_A Cell division protein F 91.6 0.12 3.9E-06 51.5 3.9 29 167-197 47-75 (476)
312 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.098 3.3E-06 49.2 3.2 26 169-194 169-194 (330)
313 3m6a_A ATP-dependent protease 91.6 0.095 3.2E-06 52.6 3.3 26 170-195 107-132 (543)
314 2vp4_A Deoxynucleoside kinase; 91.5 0.075 2.6E-06 46.7 2.2 26 167-192 16-41 (230)
315 1sxj_E Activator 1 40 kDa subu 91.5 0.11 3.8E-06 47.8 3.5 22 174-195 39-60 (354)
316 1odf_A YGR205W, hypothetical 3 91.5 0.17 5.7E-06 46.9 4.6 28 168-195 28-55 (290)
317 1a7j_A Phosphoribulokinase; tr 91.5 0.078 2.7E-06 48.9 2.4 41 171-218 5-45 (290)
318 3b60_A Lipid A export ATP-bind 91.5 0.098 3.3E-06 52.7 3.3 28 167-194 365-392 (582)
319 3bor_A Human initiation factor 91.4 0.33 1.1E-05 42.4 6.2 30 71-100 24-53 (237)
320 1gtv_A TMK, thymidylate kinase 91.4 0.052 1.8E-06 46.2 1.0 23 173-195 2-24 (214)
321 2yl4_A ATP-binding cassette SU 91.4 0.099 3.4E-06 52.8 3.2 28 167-194 366-393 (595)
322 1np6_A Molybdopterin-guanine d 91.4 0.12 4E-06 44.4 3.2 27 169-195 4-30 (174)
323 3io3_A DEHA2D07832P; chaperone 91.4 0.22 7.4E-06 47.4 5.4 48 159-215 8-57 (348)
324 1ypw_A Transitional endoplasmi 91.3 0.11 3.6E-06 54.8 3.5 28 167-194 234-261 (806)
325 3zq6_A Putative arsenical pump 91.3 0.16 5.4E-06 47.3 4.3 39 171-216 14-52 (324)
326 1oxx_K GLCV, glucose, ABC tran 91.3 0.056 1.9E-06 51.7 1.2 27 167-193 27-53 (353)
327 1p9r_A General secretion pathw 91.3 0.2 7E-06 48.8 5.2 46 159-214 158-203 (418)
328 2woo_A ATPase GET3; tail-ancho 91.3 0.21 7.3E-06 46.6 5.2 39 170-215 18-56 (329)
329 1jr3_A DNA polymerase III subu 91.3 0.12 4E-06 47.7 3.3 24 172-195 39-62 (373)
330 1hyq_A MIND, cell division inh 91.2 0.17 5.7E-06 44.7 4.2 37 173-216 5-41 (263)
331 1uf9_A TT1252 protein; P-loop, 91.2 0.11 3.8E-06 43.7 2.8 23 171-193 8-30 (203)
332 3p32_A Probable GTPase RV1496/ 91.2 0.17 5.9E-06 47.7 4.5 38 171-215 79-116 (355)
333 2dhr_A FTSH; AAA+ protein, hex 91.1 0.15 5.1E-06 51.0 4.1 27 167-195 62-88 (499)
334 1ak2_A Adenylate kinase isoenz 91.0 0.15 5.1E-06 44.7 3.7 25 171-195 16-40 (233)
335 1ltq_A Polynucleotide kinase; 91.0 0.12 4E-06 46.8 3.0 23 172-194 3-25 (301)
336 1g3q_A MIND ATPase, cell divis 91.0 0.17 6E-06 43.7 4.0 37 173-216 5-41 (237)
337 3bfv_A CAPA1, CAPB2, membrane 90.9 0.2 6.9E-06 45.5 4.5 39 171-216 82-121 (271)
338 3ug7_A Arsenical pump-driving 90.9 0.23 7.7E-06 46.9 5.0 43 167-216 22-64 (349)
339 2afh_E Nitrogenase iron protei 90.9 0.16 5.4E-06 45.8 3.7 38 173-217 4-41 (289)
340 2xb4_A Adenylate kinase; ATP-b 90.9 0.13 4.4E-06 45.0 3.0 22 173-194 2-23 (223)
341 3ber_A Probable ATP-dependent 90.9 0.27 9.2E-06 43.6 5.2 25 76-100 42-66 (249)
342 1ihu_A Arsenical pump-driving 90.8 0.18 6.3E-06 50.5 4.6 38 171-215 8-45 (589)
343 2q0z_X Protein Pro2281; SEC63, 90.8 0.54 1.9E-05 44.2 7.5 50 82-131 167-216 (339)
344 1xjc_A MOBB protein homolog; s 90.8 0.21 7.3E-06 42.9 4.3 24 172-195 5-28 (169)
345 2a6h_A DNA-directed RNA polyme 90.8 0.045 1.5E-06 51.9 0.0 56 72-130 252-307 (315)
346 1vht_A Dephospho-COA kinase; s 90.8 0.14 4.6E-06 44.1 3.1 23 171-193 4-26 (218)
347 3qf4_B Uncharacterized ABC tra 90.8 0.14 4.8E-06 51.8 3.6 27 167-193 377-403 (598)
348 3pvs_A Replication-associated 90.8 0.15 5E-06 50.1 3.7 24 172-195 51-74 (447)
349 1e4v_A Adenylate kinase; trans 90.7 0.13 4.5E-06 44.2 2.9 23 173-195 2-24 (214)
350 3cio_A ETK, tyrosine-protein k 90.6 0.21 7.1E-06 46.1 4.4 39 171-216 104-143 (299)
351 1ypw_A Transitional endoplasmi 90.5 0.09 3.1E-06 55.4 2.0 32 166-197 506-537 (806)
352 3pxi_A Negative regulator of g 90.5 0.21 7.3E-06 51.6 4.8 23 173-195 523-545 (758)
353 3ake_A Cytidylate kinase; CMP 90.5 0.15 5.1E-06 43.0 3.0 23 173-195 4-26 (208)
354 1ex7_A Guanylate kinase; subst 90.4 0.15 5.2E-06 44.3 3.1 21 174-194 4-24 (186)
355 3a8t_A Adenylate isopentenyltr 90.3 0.16 5.3E-06 48.6 3.3 26 170-195 39-64 (339)
356 2yv5_A YJEQ protein; hydrolase 90.3 0.19 6.7E-06 46.4 3.9 32 156-192 155-186 (302)
357 3crm_A TRNA delta(2)-isopenten 90.3 0.24 8.3E-06 46.9 4.6 23 172-194 6-28 (323)
358 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.14 4.7E-06 50.6 3.0 27 168-194 135-161 (460)
359 2ph1_A Nucleotide-binding prot 90.2 0.22 7.6E-06 44.4 4.1 39 172-217 20-58 (262)
360 3fmp_B ATP-dependent RNA helic 90.1 0.88 3E-05 43.7 8.5 41 171-215 131-171 (479)
361 3nwj_A ATSK2; P loop, shikimat 90.0 0.12 4.2E-06 46.8 2.2 25 171-195 48-72 (250)
362 2rcn_A Probable GTPase ENGC; Y 89.8 0.22 7.7E-06 47.7 4.0 34 156-194 205-238 (358)
363 3q9l_A Septum site-determining 89.8 0.25 8.6E-06 43.2 4.0 37 173-216 5-41 (260)
364 1q3t_A Cytidylate kinase; nucl 89.8 0.21 7.1E-06 43.8 3.4 27 168-194 13-39 (236)
365 3cwq_A Para family chromosome 89.7 0.29 1E-05 42.3 4.3 37 173-217 3-39 (209)
366 2oap_1 GSPE-2, type II secreti 89.7 0.17 6E-06 50.6 3.2 25 169-193 258-282 (511)
367 3jvv_A Twitching mobility prot 89.6 0.19 6.5E-06 47.9 3.3 26 169-194 121-146 (356)
368 1g41_A Heat shock protein HSLU 89.6 0.25 8.6E-06 48.8 4.3 28 168-196 48-75 (444)
369 3zvl_A Bifunctional polynucleo 89.6 0.16 5.6E-06 49.0 2.9 25 170-194 257-281 (416)
370 4dez_A POL IV 1, DNA polymeras 89.6 0.36 1.2E-05 45.6 5.2 43 72-116 176-218 (356)
371 3qf4_A ABC transporter, ATP-bi 89.6 0.14 4.6E-06 51.9 2.4 27 167-193 365-391 (587)
372 3d3q_A TRNA delta(2)-isopenten 89.5 0.2 6.9E-06 47.8 3.4 24 172-195 8-31 (340)
373 2qm8_A GTPase/ATPase; G protei 89.5 0.21 7.1E-06 47.0 3.4 27 168-194 52-78 (337)
374 4a82_A Cystic fibrosis transme 89.5 0.11 3.9E-06 52.2 1.7 27 167-193 363-389 (578)
375 1q0u_A Bstdead; DEAD protein, 89.4 0.7 2.4E-05 39.5 6.5 37 174-214 44-80 (219)
376 1yqt_A RNAse L inhibitor; ATP- 89.4 0.2 7E-06 50.2 3.5 27 167-193 43-69 (538)
377 1z00_A DNA excision repair pro 89.4 0.7 2.4E-05 35.0 5.7 56 75-131 17-73 (89)
378 3r20_A Cytidylate kinase; stru 89.3 0.2 6.8E-06 45.2 3.0 24 171-194 9-32 (233)
379 3nbx_X ATPase RAVA; AAA+ ATPas 89.2 0.1 3.4E-06 52.3 1.0 24 172-195 42-65 (500)
380 3fkq_A NTRC-like two-domain pr 89.1 0.31 1.1E-05 46.1 4.4 37 172-215 145-181 (373)
381 1lw7_A Transcriptional regulat 89.1 0.18 6.3E-06 47.4 2.8 33 163-195 160-194 (365)
382 2j0s_A ATP-dependent RNA helic 89.1 1.2 4E-05 41.4 8.3 38 174-215 77-114 (410)
383 3cr8_A Sulfate adenylyltranfer 89.1 0.21 7.3E-06 50.5 3.4 42 168-215 366-407 (552)
384 3dkp_A Probable ATP-dependent 89.1 1.2 4.1E-05 38.6 7.9 28 72-99 20-51 (245)
385 2qag_B Septin-6, protein NEDD5 88.9 0.22 7.6E-06 48.9 3.3 28 167-194 36-65 (427)
386 2orv_A Thymidine kinase; TP4A 88.8 0.37 1.3E-05 43.8 4.5 37 170-213 18-54 (234)
387 3k1j_A LON protease, ATP-depen 88.8 0.15 5.1E-06 51.6 2.0 25 171-195 60-84 (604)
388 2p67_A LAO/AO transport system 88.7 0.33 1.1E-05 45.5 4.2 40 169-215 54-93 (341)
389 3exa_A TRNA delta(2)-isopenten 88.7 0.23 7.8E-06 47.2 3.1 24 171-194 3-26 (322)
390 3k9g_A PF-32 protein; ssgcid, 88.7 0.35 1.2E-05 42.9 4.1 38 172-217 29-66 (267)
391 3foz_A TRNA delta(2)-isopenten 88.7 0.28 9.6E-06 46.5 3.6 24 171-194 10-33 (316)
392 1e9r_A Conjugal transfer prote 88.6 0.2 7E-06 47.9 2.7 25 172-196 54-78 (437)
393 2gks_A Bifunctional SAT/APS ki 88.5 0.64 2.2E-05 46.8 6.4 38 171-215 372-409 (546)
394 3fmo_B ATP-dependent RNA helic 88.5 1.4 4.9E-05 40.2 8.3 26 74-99 89-114 (300)
395 2oze_A ORF delta'; para, walke 88.5 0.29 9.8E-06 44.2 3.5 39 171-216 34-75 (298)
396 3bq0_A POL IV, DBH, DNA polyme 88.4 0.46 1.6E-05 44.8 5.1 54 72-129 177-230 (354)
397 1jx4_A DNA polymerase IV (fami 88.4 0.34 1.2E-05 45.7 4.1 54 72-129 176-229 (352)
398 2wsm_A Hydrogenase expression/ 88.3 0.51 1.7E-05 40.1 4.8 24 172-195 31-54 (221)
399 1yqt_A RNAse L inhibitor; ATP- 88.3 0.22 7.4E-06 50.0 2.8 46 168-216 309-356 (538)
400 3ozx_A RNAse L inhibitor; ATP 88.3 0.19 6.3E-06 50.7 2.3 26 168-193 291-316 (538)
401 1pui_A ENGB, probable GTP-bind 88.3 0.13 4.5E-06 43.3 1.0 32 158-192 16-47 (210)
402 2f6r_A COA synthase, bifunctio 88.3 0.27 9.1E-06 44.9 3.1 22 171-192 75-96 (281)
403 3pxg_A Negative regulator of g 88.2 0.24 8.1E-06 48.6 2.9 40 173-215 203-245 (468)
404 1z08_A RAS-related protein RAB 88.1 0.63 2.1E-05 37.1 5.0 22 174-195 9-30 (170)
405 1u0l_A Probable GTPase ENGC; p 88.1 0.29 9.9E-06 45.1 3.3 33 156-193 159-191 (301)
406 2a1j_B DNA excision repair pro 87.9 0.57 1.9E-05 35.7 4.4 76 47-130 9-85 (91)
407 1z00_B DNA repair endonuclease 87.8 0.72 2.5E-05 35.3 4.9 56 71-129 12-69 (84)
408 1qvr_A CLPB protein; coiled co 87.7 0.36 1.2E-05 50.8 4.1 38 172-216 589-626 (854)
409 2ocp_A DGK, deoxyguanosine kin 87.3 0.33 1.1E-05 42.6 3.1 25 171-195 2-26 (241)
410 1byi_A Dethiobiotin synthase; 87.3 0.42 1.4E-05 40.9 3.7 34 173-213 4-37 (224)
411 2va8_A SSO2462, SKI2-type heli 87.2 1.2 3.9E-05 45.5 7.4 54 77-133 657-711 (715)
412 3bk7_A ABC transporter ATP-bin 87.1 0.28 9.6E-06 50.1 2.8 46 168-216 379-426 (607)
413 3q5d_A Atlastin-1; G protein, 87.1 0.82 2.8E-05 45.1 6.1 41 153-193 46-89 (447)
414 1wcv_1 SOJ, segregation protei 87.1 0.28 9.5E-06 43.5 2.5 38 172-216 7-45 (257)
415 2grj_A Dephospho-COA kinase; T 87.1 0.35 1.2E-05 41.9 3.0 24 171-194 12-35 (192)
416 2f9l_A RAB11B, member RAS onco 87.0 0.33 1.1E-05 40.7 2.8 21 174-194 8-28 (199)
417 1z2a_A RAS-related protein RAB 86.9 0.35 1.2E-05 38.5 2.8 22 174-195 8-29 (168)
418 2xj4_A MIPZ; replication, cell 86.8 0.43 1.5E-05 43.1 3.6 37 173-216 7-43 (286)
419 2oxc_A Probable ATP-dependent 86.8 2 6.8E-05 37.0 7.8 25 75-99 22-46 (230)
420 2dyk_A GTP-binding protein; GT 86.6 0.37 1.3E-05 38.2 2.8 21 174-194 4-24 (161)
421 1oft_A SULA, hypothetical prot 86.6 0.67 2.3E-05 39.8 4.5 66 150-220 22-89 (161)
422 4b3f_X DNA-binding protein smu 86.6 0.34 1.2E-05 49.2 3.1 26 170-195 204-229 (646)
423 2wjg_A FEOB, ferrous iron tran 86.6 0.52 1.8E-05 38.6 3.7 22 173-194 9-30 (188)
424 1oix_A RAS-related protein RAB 86.6 0.37 1.3E-05 40.4 2.9 22 173-194 31-52 (191)
425 2hf9_A Probable hydrogenase ni 86.6 0.41 1.4E-05 40.9 3.2 23 173-195 40-62 (226)
426 4edh_A DTMP kinase, thymidylat 86.5 0.41 1.4E-05 42.1 3.2 27 169-195 4-30 (213)
427 3fe2_A Probable ATP-dependent 86.5 1.4 4.6E-05 38.4 6.6 32 69-100 21-52 (242)
428 2f1r_A Molybdopterin-guanine d 86.5 0.2 6.7E-06 42.8 1.1 39 172-215 3-41 (171)
429 1kft_A UVRC, excinuclease ABC 86.5 0.26 8.7E-06 36.6 1.6 47 82-129 30-76 (78)
430 3bk7_A ABC transporter ATP-bin 86.4 0.34 1.1E-05 49.5 2.9 27 167-193 113-139 (607)
431 2zej_A Dardarin, leucine-rich 86.4 0.31 1.1E-05 40.4 2.2 20 174-193 5-24 (184)
432 1g5t_A COB(I)alamin adenosyltr 86.3 0.46 1.6E-05 42.0 3.4 38 171-215 28-65 (196)
433 1x2i_A HEF helicase/nuclease; 86.3 0.95 3.2E-05 32.5 4.6 52 78-130 15-67 (75)
434 3gqc_A DNA repair protein REV1 86.3 0.55 1.9E-05 47.1 4.4 43 72-116 313-355 (504)
435 3j16_B RLI1P; ribosome recycli 86.3 0.41 1.4E-05 49.0 3.5 26 168-193 100-125 (608)
436 1kao_A RAP2A; GTP-binding prot 86.2 0.4 1.4E-05 37.9 2.8 22 174-195 6-27 (167)
437 3lv8_A DTMP kinase, thymidylat 86.2 0.42 1.4E-05 43.0 3.1 32 164-195 20-51 (236)
438 3eph_A TRNA isopentenyltransfe 86.2 0.42 1.4E-05 46.8 3.4 24 172-195 3-26 (409)
439 1u8z_A RAS-related protein RAL 86.1 0.41 1.4E-05 37.9 2.8 22 174-195 7-28 (168)
440 2ce2_X GTPase HRAS; signaling 86.1 0.4 1.4E-05 37.8 2.7 22 174-195 6-27 (166)
441 1qvr_A CLPB protein; coiled co 86.1 0.42 1.4E-05 50.3 3.5 40 174-216 194-236 (854)
442 2pl3_A Probable ATP-dependent 86.0 1.4 4.8E-05 37.9 6.4 26 75-100 23-48 (236)
443 3tqf_A HPR(Ser) kinase; transf 86.0 0.43 1.5E-05 41.9 3.0 24 171-194 16-39 (181)
444 2h92_A Cytidylate kinase; ross 86.0 0.39 1.3E-05 41.1 2.7 24 172-195 4-27 (219)
445 1r6b_X CLPA protein; AAA+, N-t 86.0 0.62 2.1E-05 48.0 4.7 33 173-215 490-522 (758)
446 3ozx_A RNAse L inhibitor; ATP 85.9 0.37 1.3E-05 48.5 2.9 26 168-193 22-47 (538)
447 2wji_A Ferrous iron transport 85.8 0.43 1.5E-05 38.8 2.8 22 173-194 5-26 (165)
448 1m8p_A Sulfate adenylyltransfe 85.8 1.1 3.8E-05 45.3 6.4 50 159-215 380-434 (573)
449 3gmt_A Adenylate kinase; ssgci 85.6 0.4 1.4E-05 43.2 2.7 23 174-196 11-33 (230)
450 3f9v_A Minichromosome maintena 85.6 0.33 1.1E-05 49.3 2.4 23 173-195 329-351 (595)
451 3ux8_A Excinuclease ABC, A sub 85.6 0.3 1E-05 49.9 2.1 24 167-190 344-367 (670)
452 3q85_A GTP-binding protein REM 85.5 0.46 1.6E-05 38.0 2.8 19 174-192 5-23 (169)
453 3j16_B RLI1P; ribosome recycli 85.4 0.38 1.3E-05 49.2 2.7 28 166-193 373-400 (608)
454 2nzj_A GTP-binding protein REM 85.4 0.46 1.6E-05 38.2 2.8 21 174-194 7-27 (175)
455 1ky3_A GTP-binding protein YPT 85.3 0.46 1.6E-05 38.3 2.8 22 174-195 11-32 (182)
456 3pxi_A Negative regulator of g 85.3 0.42 1.4E-05 49.4 3.1 23 173-195 203-225 (758)
457 1y88_A Hypothetical protein AF 85.3 1.7 5.8E-05 38.5 6.6 56 74-133 141-196 (199)
458 1p5z_B DCK, deoxycytidine kina 85.2 0.26 8.9E-06 43.9 1.2 25 170-194 23-47 (263)
459 1ek0_A Protein (GTP-binding pr 85.1 0.5 1.7E-05 37.6 2.8 22 174-195 6-27 (170)
460 1nij_A Hypothetical protein YJ 84.9 0.44 1.5E-05 44.2 2.8 23 172-194 5-27 (318)
461 4f4c_A Multidrug resistance pr 84.9 0.44 1.5E-05 52.8 3.1 27 167-193 1101-1127(1321)
462 1g16_A RAS-related protein SEC 84.9 0.49 1.7E-05 37.7 2.7 21 174-194 6-26 (170)
463 3pg5_A Uncharacterized protein 84.9 0.34 1.2E-05 45.8 2.0 38 173-217 4-41 (361)
464 2erx_A GTP-binding protein DI- 84.9 0.51 1.7E-05 37.6 2.8 21 174-194 6-26 (172)
465 3iuy_A Probable ATP-dependent 84.8 2 6.9E-05 36.7 6.8 34 66-99 8-42 (228)
466 1e69_A Chromosome segregation 84.8 0.56 1.9E-05 43.4 3.4 24 169-193 23-46 (322)
467 4f4y_A POL IV, DNA polymerase 84.7 0.39 1.3E-05 45.8 2.3 43 72-116 177-219 (362)
468 1r8s_A ADP-ribosylation factor 84.6 0.53 1.8E-05 37.4 2.8 44 174-217 3-54 (164)
469 2ged_A SR-beta, signal recogni 84.6 0.51 1.8E-05 38.9 2.8 24 172-195 49-72 (193)
470 1c1y_A RAS-related protein RAP 84.6 0.54 1.8E-05 37.3 2.8 21 174-194 6-26 (167)
471 1z0j_A RAB-22, RAS-related pro 84.5 0.54 1.8E-05 37.4 2.8 22 174-195 9-30 (170)
472 2ga8_A Hypothetical 39.9 kDa p 84.5 0.51 1.8E-05 45.4 3.0 21 174-194 27-47 (359)
473 1r2q_A RAS-related protein RAB 84.5 0.55 1.9E-05 37.3 2.8 21 174-194 9-29 (170)
474 1wms_A RAB-9, RAB9, RAS-relate 84.4 0.54 1.8E-05 37.9 2.8 21 174-194 10-30 (177)
475 1nrj_B SR-beta, signal recogni 84.4 0.52 1.8E-05 39.8 2.8 45 173-217 14-65 (218)
476 3v9p_A DTMP kinase, thymidylat 84.4 0.52 1.8E-05 42.1 2.9 27 169-195 23-49 (227)
477 4f4c_A Multidrug resistance pr 84.4 0.47 1.6E-05 52.6 3.1 27 167-193 440-466 (1321)
478 2hxs_A RAB-26, RAS-related pro 84.3 0.55 1.9E-05 37.9 2.8 21 174-194 9-29 (178)
479 1f2t_A RAD50 ABC-ATPase; DNA d 84.3 0.62 2.1E-05 38.4 3.1 22 172-193 24-45 (149)
480 2gxq_A Heat resistant RNA depe 84.2 1.7 5.9E-05 36.2 6.0 41 174-215 41-81 (207)
481 3fwy_A Light-independent proto 84.2 0.76 2.6E-05 42.9 4.0 43 167-216 44-86 (314)
482 3euj_A Chromosome partition pr 84.0 0.6 2E-05 46.6 3.4 27 168-195 27-53 (483)
483 2y8e_A RAB-protein 6, GH09086P 84.0 0.56 1.9E-05 37.7 2.7 21 174-194 17-37 (179)
484 3con_A GTPase NRAS; structural 84.0 0.57 2E-05 38.5 2.8 22 174-195 24-45 (190)
485 3g5u_A MCG1178, multidrug resi 84.0 0.45 1.5E-05 52.6 2.7 27 167-193 412-438 (1284)
486 3sop_A Neuronal-specific septi 84.0 0.55 1.9E-05 42.8 2.9 23 173-195 4-26 (270)
487 1z0f_A RAB14, member RAS oncog 83.9 0.59 2E-05 37.5 2.8 22 174-195 18-39 (179)
488 1upt_A ARL1, ADP-ribosylation 83.8 0.6 2.1E-05 37.3 2.8 45 173-217 9-61 (171)
489 3q72_A GTP-binding protein RAD 83.8 0.54 1.9E-05 37.5 2.5 19 174-192 5-23 (166)
490 3bc1_A RAS-related protein RAB 83.8 0.6 2.1E-05 38.0 2.8 21 174-194 14-34 (195)
491 3bqs_A Uncharacterized protein 83.7 0.63 2.2E-05 36.4 2.7 36 76-111 3-39 (93)
492 2gj8_A MNME, tRNA modification 83.7 0.65 2.2E-05 38.2 3.0 24 171-194 4-27 (172)
493 1im4_A DBH; DNA polymerase PAL 83.7 0.44 1.5E-05 42.4 2.1 39 72-112 182-220 (221)
494 2fn4_A P23, RAS-related protei 83.6 0.59 2E-05 37.6 2.6 21 174-194 12-32 (181)
495 1w1w_A Structural maintenance 83.6 0.67 2.3E-05 44.5 3.5 26 168-193 23-48 (430)
496 2a9k_A RAS-related protein RAL 83.6 0.62 2.1E-05 37.7 2.8 22 174-195 21-42 (187)
497 3tmk_A Thymidylate kinase; pho 83.3 0.68 2.3E-05 41.0 3.1 26 170-195 4-29 (216)
498 3pey_A ATP-dependent RNA helic 83.3 1.6 5.6E-05 39.7 5.8 40 172-215 45-84 (395)
499 3ux8_A Excinuclease ABC, A sub 83.3 0.42 1.4E-05 48.9 2.0 22 167-188 40-61 (670)
500 2lkc_A Translation initiation 83.2 0.65 2.2E-05 37.5 2.8 23 172-194 9-31 (178)
No 1
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=1.1e-48 Score=383.91 Aligned_cols=248 Identities=42% Similarity=0.692 Sum_probs=216.0
Q ss_pred ccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHH
Q psy13674 66 EEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVE 145 (315)
Q Consensus 66 ~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~ 145 (315)
++|++.+|+||+.|+.+||++.+++||++|||+|+++|+.+++++|++++|+|+.+|+++++++++.++.+|.||.++++
T Consensus 73 ~~~~~~~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~ 152 (400)
T 3lda_A 73 DEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHM 152 (400)
T ss_dssp -----CCSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHH
T ss_pred ccccccCccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHh
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII 225 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~ 225 (315)
+++...+|+||++.||++|+|||+.|.+++|+|+||+|||+||+++|+++++|.+ .|+.+++++|||+|..|++. |+.
T Consensus 153 ~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~-~Gg~~~~viyid~E~~~~~~-rl~ 230 (400)
T 3lda_A 153 RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLD-IGGGEGKCLYIDTEGTFRPV-RLV 230 (400)
T ss_dssp HHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSSEEEEEESSSCCCHH-HHH
T ss_pred hhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcc-cCCCCCcEEEEeCCCccCHH-HHH
Confidence 8889999999999999999999999999999999999999999999999999877 77788999999999999998 888
Q ss_pred HHHHHHHH----------------------------------------------------------------HHHHHHHH
Q psy13674 226 AIASLVTL----------------------------------------------------------------VGSRLPMS 241 (315)
Q Consensus 226 ~iaer~~l----------------------------------------------------------------L~~~~~~L 241 (315)
++++++++ +.+++..|
T Consensus 231 ~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 231 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRAL 310 (400)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHH
Confidence 77765321 15678889
Q ss_pred HHHhhcc-cEEEEE------------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCC
Q psy13674 242 FHITRED-LIVFFP------------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNG 308 (315)
Q Consensus 242 ~~LA~e~-iaVV~~------------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~ 308 (315)
+++++++ ++||.+ |.+++.+|++|..|+|++++|++|++.+++.|+++|+|+|+.|++++.|.|+++
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g~~R~l~v~K~R~~p~~e~~F~It~~ 390 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYED 390 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECSTTEEEEEEEECSSSCSCEEEEEEETT
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecCCCcEEEEEEcCCCCCCCceEEEEeCC
Confidence 9999999 877742 223567899999999999999999998888999999999999999999999999
Q ss_pred CcccCCC
Q psy13674 309 GIADAKD 315 (315)
Q Consensus 309 GI~~~~~ 315 (315)
||+++++
T Consensus 391 Gi~~~~~ 397 (400)
T 3lda_A 391 GVGDPRE 397 (400)
T ss_dssp EEECCC-
T ss_pred ccccccc
Confidence 9999863
No 2
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=1.2e-46 Score=360.62 Aligned_cols=244 Identities=67% Similarity=0.988 Sum_probs=152.0
Q ss_pred ccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcC
Q psy13674 70 EEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQ 149 (315)
Q Consensus 70 ~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~ 149 (315)
++.|+||+.|+.+||++.+++||+++||+|+++|+.+++.+|++++|+|+.+|+++++.+.+.++.+|.||.++++.+..
T Consensus 21 ~~~~~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 100 (343)
T 1v5w_A 21 ESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKM 100 (343)
T ss_dssp -----------------------------------------------------------------CCSEEHHHHHHHGGG
T ss_pred ccccCcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhhcc
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIAS 229 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iae 229 (315)
...|+||++.||.+|+||++.|.+++|+|+||+|||+||+++|.++++|.. +|+.+++|+|||+|.+|+++ |+.++++
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg~~~~vlyi~~E~~~~~~-~l~~~~~ 178 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTENTFRPD-RLRDIAD 178 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSSCCCHH-HHHHHHH
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHH-HHHHHHH
Confidence 899999999999999999999999999999999999999999999999877 77889999999999999988 8777654
Q ss_pred HHHH------------------------------------------------------------------HHHHHHHHHH
Q psy13674 230 LVTL------------------------------------------------------------------VGSRLPMSFH 243 (315)
Q Consensus 230 r~~l------------------------------------------------------------------L~~~~~~L~~ 243 (315)
++++ +.++++.|++
T Consensus 179 ~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 179 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3210 2455667899
Q ss_pred Hhhcc-cEEEEEc------------cCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCc
Q psy13674 244 ITRED-LIVFFPL------------NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310 (315)
Q Consensus 244 LA~e~-iaVV~~~------------~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI 310 (315)
+|+++ ++||.+. .+++.+|++|+.|+|++++|++|+|.+++.|.++|.|+|+.|.+.+.|.|+++||
T Consensus 259 la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~~~r~~~v~K~r~~p~~~~~f~I~~~Gi 338 (343)
T 1v5w_A 259 ISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 338 (343)
T ss_dssp HHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESSTTEEEEEEEECTTCCSSCEEEEEETTEE
T ss_pred HHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcCCCEEEEEEEECCCCCCeeEEEEEeCCCc
Confidence 99999 8888531 1345689999999999999999999888899999999999999899999999999
Q ss_pred ccCCC
Q psy13674 311 ADAKD 315 (315)
Q Consensus 311 ~~~~~ 315 (315)
++++|
T Consensus 339 ~~~~~ 343 (343)
T 1v5w_A 339 GDAKE 343 (343)
T ss_dssp EECCC
T ss_pred cCCCC
Confidence 99875
No 3
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=8.1e-45 Score=344.57 Aligned_cols=246 Identities=35% Similarity=0.558 Sum_probs=142.5
Q ss_pred ccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHH
Q psy13674 66 EEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVE 145 (315)
Q Consensus 66 ~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~ 145 (315)
|-+....+.||+.|. ||++.+++||+++||+|+++|+..++.+|++++|+|+.+|+++++.+.+.++.+|.||.++++
T Consensus 4 ~~~~~~~~~~~~~l~--g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
T 2z43_A 4 EVEQKKNIKTINDLP--GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKK 81 (324)
T ss_dssp ----------------------------------------------------------------------CCCCHHHHHH
T ss_pred hhcCCCCCccHHHcC--CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhh
Confidence 334445666999998 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII 225 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~ 225 (315)
.+.....|+||++.||.+|+||++.|.+++|+|+||+|||+||+++|.+++.|.+ +|+.+++|+|||+|.+|+++ |+.
T Consensus 82 ~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~-~l~ 159 (324)
T 2z43_A 82 ERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWE-RIE 159 (324)
T ss_dssp HHCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHH-HHH
T ss_pred hhccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHH-HHH
Confidence 8788899999999999999999999999999999999999999999999988866 67778999999999999988 877
Q ss_pred HHHHHHHH-----------------------------------------------------------------HHHHHHH
Q psy13674 226 AIASLVTL-----------------------------------------------------------------VGSRLPM 240 (315)
Q Consensus 226 ~iaer~~l-----------------------------------------------------------------L~~~~~~ 240 (315)
++++++++ +.++++.
T Consensus 160 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~ 239 (324)
T 2z43_A 160 NMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQ 239 (324)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHH
Confidence 76543210 2346678
Q ss_pred HHHHhhcc-cEEEEEcc---------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCc
Q psy13674 241 SFHITRED-LIVFFPLN---------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGI 310 (315)
Q Consensus 241 L~~LA~e~-iaVV~~~~---------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI 310 (315)
|+++|+++ ++||.+.. +++.+|++|+.|+|++++|++|+|.+|..|+++|.|+|+.|.+.+.|.|+++||
T Consensus 240 L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r~~~~~r~~~v~k~~~~p~~~~~f~I~~~Gi 319 (324)
T 2z43_A 240 LTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319 (324)
T ss_dssp HHHHHHHHTCEEEEEEEC------------------------CEEEEEEECSTTEEEEEEEECSSSCCEEEEEEEETTEE
T ss_pred HHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEEcCCCeEEEEEEECCCCCceEEEEEEeCCCc
Confidence 89999999 88885321 245689999999999999999999888899999999999999999999999999
Q ss_pred ccCCC
Q psy13674 311 ADAKD 315 (315)
Q Consensus 311 ~~~~~ 315 (315)
++++|
T Consensus 320 ~~~~~ 324 (324)
T 2z43_A 320 RDAEE 324 (324)
T ss_dssp ECCC-
T ss_pred ccCCC
Confidence 99875
No 4
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=4.8e-43 Score=330.27 Aligned_cols=235 Identities=33% Similarity=0.589 Sum_probs=207.2
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccce
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKI 153 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~i 153 (315)
+||+.|+ ||++.+++||+++||+|++|++..++.+|++++|+|+.+|.+++++|++.++.+|.||.++++++.....|
T Consensus 3 ~~~~~l~--gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~i 80 (322)
T 2i1q_A 3 DNLTDLP--GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKL 80 (322)
T ss_dssp --CTTST--TCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTTCCEE
T ss_pred ccHhhcC--CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhccCCee
Confidence 3677777 99999999999999999999999999999999999999999999999999999999999999887888999
Q ss_pred ecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCc---------cccCCCC-CeEEEEeCCCCCChhhH
Q psy13674 154 TTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPD---------ETRGYTG-GKVIYVDSENTLYPLLN 223 (315)
Q Consensus 154 sTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~---------~~~gg~~-~~vvyIDtE~~F~~~~R 223 (315)
+||++.||.+|+||+++|.+++|+|+||+|||+||+++|.++++|. . .||.+ ++|+|||+|.+|+++ |
T Consensus 81 ~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~-~gg~~~~~v~yi~~e~~~~~~-~ 158 (322)
T 2i1q_A 81 STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS-KGEVAQPKAVYIDTEGTFRPE-R 158 (322)
T ss_dssp CCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSC-TTTTSSEEEEEEESSSCCCHH-H
T ss_pred cCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccc-cCCCCCceEEEEECCCCCCHH-H
Confidence 9999999999999999999999999999999999999999988764 2 34443 899999999999998 8
Q ss_pred HHHHHHHHHH-----------------------------------------------------------------HHHHH
Q psy13674 224 IIAIASLVTL-----------------------------------------------------------------VGSRL 238 (315)
Q Consensus 224 l~~iaer~~l-----------------------------------------------------------------L~~~~ 238 (315)
+.++++++++ +.+++
T Consensus 159 l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~ 238 (322)
T 2i1q_A 159 IMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHM 238 (322)
T ss_dssp HHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 8877654310 24456
Q ss_pred HHHHHHhhcc-cEEEEEcc---------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCC
Q psy13674 239 PMSFHITRED-LIVFFPLN---------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNG 308 (315)
Q Consensus 239 ~~L~~LA~e~-iaVV~~~~---------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~ 308 (315)
+.|+++|+++ ++||.+.. +++.+|++|+.|+|++++|++|+|.+++.|+++|.|+|+.|.+.+.|.|+++
T Consensus 239 ~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~~~~~r~~~v~k~~~~p~~~~~f~I~~~ 318 (322)
T 2i1q_A 239 ATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEK 318 (322)
T ss_dssp HHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEECSTTEEEEEEEECSSSCCEEEEEEEETT
T ss_pred HHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEecCCCeEEEEEEECCCCCCeEEEEEEeCC
Confidence 7889999999 88885321 2456899999999999999999998888999999999999999999999999
Q ss_pred Cccc
Q psy13674 309 GIAD 312 (315)
Q Consensus 309 GI~~ 312 (315)
||+|
T Consensus 319 Gi~~ 322 (322)
T 2i1q_A 319 GIQD 322 (322)
T ss_dssp EEEC
T ss_pred CcCC
Confidence 9985
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=8.4e-43 Score=335.47 Aligned_cols=240 Identities=40% Similarity=0.677 Sum_probs=203.5
Q ss_pred cccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhcc-ccchHHHHHHhh
Q psy13674 69 GEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDN-SFLTAAQVVEKR 147 (315)
Q Consensus 69 ~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~-~~~tA~ell~~~ 147 (315)
.+..+.+|+.|. ||++.+++||++|||+|+++|+.+++++|++++|+|+.+|+++++++.+.++. +|.||.++++++
T Consensus 30 ~~~~~~~l~~l~--Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
T 1pzn_A 30 KEKIIRSIEDLP--GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKR 107 (349)
T ss_dssp -----CCSSCCT--TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHH
T ss_pred hccccccHHHcC--CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhh
Confidence 335677888885 99999999999999999999999999999999999999999999999999987 999999999988
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI 227 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i 227 (315)
....+|+||++.||.+|+||++.|++|+|+|+||+|||+||++++..+++|.+ .|+.+++|+|||+|+.|+++ |+..+
T Consensus 108 ~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~-~Gg~~G~vi~i~~e~~~~~~-~i~~i 185 (349)
T 1pzn_A 108 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE-EGGLNGSVIWIDTENTFRPE-RIREI 185 (349)
T ss_dssp HTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTSCSCEEEEEESSSCCCHH-HHHHH
T ss_pred ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchh-cCCCCCeEEEEeCCCCCCHH-HHHHH
Confidence 88999999999999999999999999999999999999999999999887665 56667899999999998877 77776
Q ss_pred HHHHHH---------------------------------------------------------------------HHHHH
Q psy13674 228 ASLVTL---------------------------------------------------------------------VGSRL 238 (315)
Q Consensus 228 aer~~l---------------------------------------------------------------------L~~~~ 238 (315)
++++++ +.+++
T Consensus 186 ~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l 265 (349)
T 1pzn_A 186 AQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL 265 (349)
T ss_dssp HHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHH
Confidence 653210 13556
Q ss_pred HHHHHHhhcc-cEEEEE---------ccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCC
Q psy13674 239 PMSFHITRED-LIVFFP---------LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNG 308 (315)
Q Consensus 239 ~~L~~LA~e~-iaVV~~---------~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~ 308 (315)
+.|+++++++ ++||.+ +.+++..|++|++|+|++++||+|++.++..|++++.|+|+.|.+++.|.|+++
T Consensus 266 ~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l~~~~~~~Ri~k~~ks~~~~~~~~~f~It~~ 345 (349)
T 1pzn_A 266 ADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEK 345 (349)
T ss_dssp HHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEEEECTTSEEEEEESCSSSSCCSEEEEEEETT
T ss_pred HHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEEEEEcCCCeEEEEEEeCCCCCCeEEEEEEcCC
Confidence 6788899988 777753 123456899999999999999999998889999999999999999999999999
Q ss_pred Cccc
Q psy13674 309 GIAD 312 (315)
Q Consensus 309 GI~~ 312 (315)
||+|
T Consensus 346 Gi~d 349 (349)
T 1pzn_A 346 GIED 349 (349)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 9975
No 6
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.94 E-value=4.5e-26 Score=202.40 Aligned_cols=165 Identities=58% Similarity=0.890 Sum_probs=128.1
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
+...|+||++.||++|+||++.|.+++|+|+||+|||+|+++++.++++|.. .|+.+++++||+++..|.+. |+.+++
T Consensus 2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~g~~~~~~~~i~~~~~~~~~-~~~~~~ 79 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPID-RGGGEGKAMYIDTEGTFRPE-RLLAVA 79 (243)
T ss_dssp CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGG-GTCCSSEEEEEESSSCCCHH-HHHHHH
T ss_pred CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchh-cCCCCCeEEEEECCCCcCHH-HHHHHH
Confidence 4578999999999999999999999999999999999999999998877655 56668899999999988876 665544
Q ss_pred HHHH---------------------------H-------------------------------------HHHHHHHHHHH
Q psy13674 229 SLVT---------------------------L-------------------------------------VGSRLPMSFHI 244 (315)
Q Consensus 229 er~~---------------------------l-------------------------------------L~~~~~~L~~L 244 (315)
++++ + +.+++..|+++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 80 ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3211 0 12356678889
Q ss_pred hhcc-cEEEEEcc------------CCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCcc
Q psy13674 245 TRED-LIVFFPLN------------ADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIA 311 (315)
Q Consensus 245 A~e~-iaVV~~~~------------~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~ 311 (315)
++++ ++||.+.. ++...|++|..|.|+++++++|++.++..|.++|.|++..|.+++.|.|++.||+
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~~~r~l~v~K~r~~~~~~~~f~I~~~Gi~ 239 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVG 239 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEECSTTEEEEEECCBTTBSCEEEEEEEETTEEE
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCCCeEEEEEEECCCCCCCeEEEEEeCCccc
Confidence 9988 77775321 2345789999999999999999988888999999999999988899999999999
Q ss_pred cCCC
Q psy13674 312 DAKD 315 (315)
Q Consensus 312 ~~~~ 315 (315)
.+++
T Consensus 240 ~~~~ 243 (243)
T 1n0w_A 240 DAKD 243 (243)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8875
No 7
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.91 E-value=4.1e-25 Score=249.19 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=153.3
Q ss_pred HHHhcCCHHHHHHHhC----CCHHHHHHHHHHHHhHhccccchHHHH--HH-hhcCccceecCChhHHHhhc-CCCCccc
Q psy13674 101 KGVQMTTRRKMSQIKG----FSEAKVDKIKEACMKICDNSFLTAAQV--VE-KRKQVFKITTGSTELDKILG-GGIESMA 172 (315)
Q Consensus 101 ~dll~~~~~~L~~~~g----is~~~v~ki~~~~~~~~~~~~~tA~el--l~-~~~~~~~isTG~~~LD~lL~-GGl~~g~ 172 (315)
.++...+|.+|++.++ ++++ +++++..+.+.+..+|.++..+ .+ ++.....++||+++||++|+ ||+++|+
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~-~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~ 733 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDEN-KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 733 (2050)
T ss_dssp CCC----------------CCSTT-HHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTS
T ss_pred hhcccCCHHHHHhhhccccCCcHH-HHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCc
Confidence 7788899999999998 9977 7778888877776565554321 11 22567899999999999998 7999999
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhh--------------------HHHHHHHHH-
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLL--------------------NIIAIASLV- 231 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~--------------------Rl~~iaer~- 231 (315)
+++|+|+||+|||+||+++|.+++. .+++|+||++|.+|+... .+.+.++++
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~-------~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~ 806 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-------cCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence 9999999999999999999999975 356899999998877530 111222110
Q ss_pred -------------------------------H----HHHHHHHHHHHHhhcc-cEEEEE---------ccCCCCcccccc
Q psy13674 232 -------------------------------T----LVGSRLPMSFHITRED-LIVFFP---------LNADPKKPVGGN 266 (315)
Q Consensus 232 -------------------------------~----lL~~~~~~L~~LA~e~-iaVV~~---------~~~~~~~PalG~ 266 (315)
+ .++++++.|+++|+++ |+||+. +++++.+|+||+
T Consensus 807 ~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~fgdp~~p~GG~ 886 (2050)
T 3cmu_A 807 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 886 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHH
T ss_pred hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhcCCCccccCCc
Confidence 0 1455777999999999 999852 335788999999
Q ss_pred cccccccEEEEEEec----CC------CeEEEEEEECCCCCCeeEEEEE-eCCCcccC
Q psy13674 267 IMAHASTTRISLRKG----RG------ETRIAKIYDSPDMPEAEAMFAI-TNGGIADA 313 (315)
Q Consensus 267 ~wah~~~tRl~L~k~----~g------~~R~~~I~KSp~~p~~~~~F~I-t~~GI~~~ 313 (315)
+|+|++++|++|+|. +| +.|+++|.+||++|..++.|.| +++||.++
T Consensus 887 ~l~h~a~~Rl~Lrr~~~~~~g~~~~G~~~Rv~~v~~sp~lp~~e~~f~I~~~~Gi~~~ 944 (2050)
T 3cmu_A 887 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 944 (2050)
T ss_dssp HHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred eeeeeeeEEEEEEeeccccccccccCCcceEEEEecCCCCCCceEEEEEEcCCCcccH
Confidence 999999999999986 55 6899999999999999999999 89999864
No 8
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.91 E-value=1.7e-24 Score=209.53 Aligned_cols=156 Identities=28% Similarity=0.394 Sum_probs=128.0
Q ss_pred ccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH-
Q psy13674 150 VFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI- 227 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i- 227 (315)
..+|+||++.||++|+ ||+++|++++|+|+||+|||+||++++..++. .+++|+|||+|..+.+. |...+
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-------~gg~VlyId~E~s~~~~-ra~rlg 110 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-------MGGVAAFIDAEHALDPV-YAKNLG 110 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHH-HHHHHT
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEecccccchH-HHHHcC
Confidence 6889999999999999 99999999999999999999999999998763 46789999999988765 44332
Q ss_pred --------------------HHHH------------------H------------------HHHHHHHHHHHHhhcc-cE
Q psy13674 228 --------------------ASLV------------------T------------------LVGSRLPMSFHITRED-LI 250 (315)
Q Consensus 228 --------------------aer~------------------~------------------lL~~~~~~L~~LA~e~-ia 250 (315)
++.+ . .+.++++.|+++++++ ++
T Consensus 111 v~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~t 190 (356)
T 3hr8_A 111 VDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAV 190 (356)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCE
T ss_pred CchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 1100 0 0455677888999999 88
Q ss_pred EEEE---------ccCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEE-eCCCc
Q psy13674 251 VFFP---------LNADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAI-TNGGI 310 (315)
Q Consensus 251 VV~~---------~~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~I-t~~GI 310 (315)
||.+ +.+++.+|++|+.|+|++++||+|+|.. |..|.++++|+|..|+.+ +.|.| .+.||
T Consensus 191 VI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi 270 (356)
T 3hr8_A 191 VIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFKTAQTYIIYGKGI 270 (356)
T ss_dssp EEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCCEEEEEEETTTBS
T ss_pred EEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCceEEEEEeeCCCc
Confidence 7752 2246778999999999999999999742 457999999999998876 99999 59998
Q ss_pred ccC
Q psy13674 311 ADA 313 (315)
Q Consensus 311 ~~~ 313 (315)
...
T Consensus 271 ~~~ 273 (356)
T 3hr8_A 271 DRE 273 (356)
T ss_dssp CHH
T ss_pred Chh
Confidence 754
No 9
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.90 E-value=2.3e-23 Score=185.04 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=117.5
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHH
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAI 227 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~i 227 (315)
+...+|+||++.||++|+||+++|++++|+|+||+|||+||+|+|.+++. ..+.+|+|+++|. +++ ++.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~------~~~~~v~~~s~E~--~~~-~~~~~ 77 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE------EYGEPGVFVTLEE--RAR-DLRRE 77 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH------HHCCCEEEEESSS--CHH-HHHHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH------hcCCCceeecccC--CHH-HHHHH
Confidence 46788999999999999999999999999999999999999999988653 2467899999995 344 43332
Q ss_pred HHHHH----------------------------------------H---------------------------------H
Q psy13674 228 ASLVT----------------------------------------L---------------------------------V 234 (315)
Q Consensus 228 aer~~----------------------------------------l---------------------------------L 234 (315)
+.+++ + +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 157 (251)
T 2zts_A 78 MASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKI 157 (251)
T ss_dssp HHTTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGH
T ss_pred HHHcCCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHH
Confidence 22110 0 5
Q ss_pred HHHHHHHHHHhhcc-cEEEEEccCC---CCcccccccccccccEEEEEEecC---CCeEEEEEEECCCCCCe--eEEEEE
Q psy13674 235 GSRLPMSFHITRED-LIVFFPLNAD---PKKPVGGNIMAHASTTRISLRKGR---GETRIAKIYDSPDMPEA--EAMFAI 305 (315)
Q Consensus 235 ~~~~~~L~~LA~e~-iaVV~~~~~~---~~~PalG~~wah~~~tRl~L~k~~---g~~R~~~I~KSp~~p~~--~~~F~I 305 (315)
.+++..|+++|+++ ++|+.+.... .........+.|.++..+.|++.+ ...|.++|.|+++.|.. .++|+|
T Consensus 158 ~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~~~~~~~~~R~l~I~K~R~~~~~~~~~~f~I 237 (251)
T 2zts_A 158 REVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEI 237 (251)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEEEecCCeEEEEEEEEEcCCCCCCCEEEEEEE
Confidence 67888999999999 8888654321 112233346778888888887642 23789999999988843 489999
Q ss_pred eCCCcc
Q psy13674 306 TNGGIA 311 (315)
Q Consensus 306 t~~GI~ 311 (315)
+++||+
T Consensus 238 t~~Gi~ 243 (251)
T 2zts_A 238 GPNGIV 243 (251)
T ss_dssp ETTEEE
T ss_pred eCCcEE
Confidence 999986
No 10
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.89 E-value=1.4e-22 Score=178.21 Aligned_cols=159 Identities=48% Similarity=0.769 Sum_probs=121.5
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
+..+|+||++.||++|+||++.|.++.|+|++|+|||+|+..++.....|.. .|+..++++|++.+..+++. ++..++
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~-~g~~~~~~i~~~~~~~~~~~-~i~~~~ 80 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE-EGGLNGSVIWIDTENTFRPE-RIREIA 80 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHH-HHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCEEEEEECCCCCCHH-HHHHHH
Confidence 4578999999999999999999999999999999999999999988776654 55568899999999887766 555444
Q ss_pred HHHHH---------------------------------------------------------------------HHHHHH
Q psy13674 229 SLVTL---------------------------------------------------------------------VGSRLP 239 (315)
Q Consensus 229 er~~l---------------------------------------------------------------------L~~~~~ 239 (315)
+.+++ +.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 81 QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 160 (231)
T ss_dssp HHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH
Confidence 32100 115677
Q ss_pred HHHHHhhcc-cEEEEEccCCCCcccccccccccccEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCccc
Q psy13674 240 MSFHITRED-LIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312 (315)
Q Consensus 240 ~L~~LA~e~-iaVV~~~~~~~~~PalG~~wah~~~tRl~L~k~~g~~R~~~I~KSp~~p~~~~~F~It~~GI~~ 312 (315)
.|+++++++ ++||.+...... +|..|.|.++.+++|++.++..|++++.|+|+.|.+++.|.|+++||+|
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~---~g~~~~~~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~~~Gl~~ 231 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQAN---GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 231 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC------------CCSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEETTEEEC
T ss_pred HHHHHHHHCCCeEEEEeecccC---cchhhHhhceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEecccccC
Confidence 788888888 777754321111 7899999999999999887889999999999999999999999999975
No 11
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.89 E-value=2e-22 Score=176.36 Aligned_cols=152 Identities=28% Similarity=0.458 Sum_probs=125.2
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
+|+||++.||++|+||++.|.++.|+|+||+|||+|+++++. . .+++++||+++..|++. |+.++++.+
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--------~~~~v~~i~~~~~~~~~-~~~~~~~~~ 69 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--------SGKKVAYVDTEGGFSPE-RLVQMAETR 69 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--------HCSEEEEEESSCCCCHH-HHHHHHHTT
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--------cCCcEEEEECCCCCCHH-HHHHHHHhc
Confidence 489999999999999999999999999999999999999998 1 35799999999888887 766554321
Q ss_pred H------------------------------H-----------------------------HHHHHHHHHHHhhcc-cEE
Q psy13674 232 T------------------------------L-----------------------------VGSRLPMSFHITRED-LIV 251 (315)
Q Consensus 232 ~------------------------------l-----------------------------L~~~~~~L~~LA~e~-iaV 251 (315)
+ + +.+++..|+++++++ ++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~v 149 (220)
T 2cvh_A 70 GLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPV 149 (220)
T ss_dssp TCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 0 0 244677799999988 776
Q ss_pred EEEcc------CCCCcccccccccccccEEEEEEec-CCCeEEEEEEECCCCCCee-EEEEEeCCCcccCC
Q psy13674 252 FFPLN------ADPKKPVGGNIMAHASTTRISLRKG-RGETRIAKIYDSPDMPEAE-AMFAITNGGIADAK 314 (315)
Q Consensus 252 V~~~~------~~~~~PalG~~wah~~~tRl~L~k~-~g~~R~~~I~KSp~~p~~~-~~F~It~~GI~~~~ 314 (315)
|.+.. .....|+++..|.+.++.+++|++. .+..|.+.|.|+++.+.+. +.|.|+++||+.++
T Consensus 150 i~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~~~ 220 (220)
T 2cvh_A 150 IVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDVE 220 (220)
T ss_dssp EEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSSCTTCEEEEEEETTEEEECC
T ss_pred EEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCCCCCceEEEEEeCCceecCC
Confidence 65322 1236799999999999999999886 4578999999999999877 99999999998764
No 12
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.88 E-value=3.3e-22 Score=191.46 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=112.8
Q ss_pred CccceecCChhHHHhhc----CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHH
Q psy13674 149 QVFKITTGSTELDKILG----GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNI 224 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~----GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl 224 (315)
...+|+||+++||++|+ ||+++| +|||+|+||+|||+||+|++++++. .+.+++|+|||+|++|++. |.
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~-----~g~g~~vlyId~E~s~~~~-ra 75 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMR-----QYPDAVCLFYDSEFGITPA-YL 75 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHH-----HCTTCEEEEEESSCCCCHH-HH
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHh-----cCCCceEEEEeccchhhHH-HH
Confidence 35689999999999999 999999 9999999999999999999999873 2347899999999999876 54
Q ss_pred HH------------------H----HHHHH--------H--------------------------------HHHHHHHHH
Q psy13674 225 IA------------------I----ASLVT--------L--------------------------------VGSRLPMSF 242 (315)
Q Consensus 225 ~~------------------i----aer~~--------l--------------------------------L~~~~~~L~ 242 (315)
.. + ++.+. + ++++++.|.
T Consensus 76 ~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~ 155 (333)
T 3io5_A 76 RSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVT 155 (333)
T ss_dssp HHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHH
T ss_pred HHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHH
Confidence 32 1 11110 0 334566677
Q ss_pred HHhhcc-cEEEEE--------ccCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEE
Q psy13674 243 HITRED-LIVFFP--------LNADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMF 303 (315)
Q Consensus 243 ~LA~e~-iaVV~~--------~~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F 303 (315)
++|+++ ++||.+ +++++. +.||+.+ |.+++||+|+|.. |....+++.|+...++-. .+|
T Consensus 156 ~~ak~~~i~vi~tNQV~k~G~~fg~p~-~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~ 233 (333)
T 3io5_A 156 PYFSTKNIPCIAINHTYETQEMFSKTV-MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFI 233 (333)
T ss_dssp HHHHHTTCEEEEEEEC----------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECSSBCTTCEEEE
T ss_pred HHHHHhCCEEEEECCeeecCcccCCCC-CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEEEccCCcCCcE
Confidence 789999 888842 234554 5899999 9999999999753 456667889988877654 788
Q ss_pred EEe-CCCcccC
Q psy13674 304 AIT-NGGIADA 313 (315)
Q Consensus 304 ~It-~~GI~~~ 313 (315)
.|. +.||...
T Consensus 234 ~i~~~~Gi~~~ 244 (333)
T 3io5_A 234 DVKFDGGIDPY 244 (333)
T ss_dssp EBCTTSCBCTT
T ss_pred EEEecCCCChH
Confidence 887 6788654
No 13
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.87 E-value=9.8e-22 Score=189.95 Aligned_cols=157 Identities=25% Similarity=0.393 Sum_probs=122.0
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhH---
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLN--- 223 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~R--- 223 (315)
.....|+||++.||.+|+ ||++.|.+++|+|+||+|||+||++++.+++. .+++|+|||+|.+|.+. +
T Consensus 39 ~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyid~E~s~~~~-~a~~ 110 (356)
T 1u94_A 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPI-YARK 110 (356)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHH-HHHH
T ss_pred ccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCCCccHH-HHHH
Confidence 467899999999999999 99999999999999999999999999998863 45789999999988754 3
Q ss_pred ------------------HHHHHHHH------H------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 224 ------------------IIAIASLV------T------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 224 ------------------l~~iaer~------~------------------------------lL~~~~~~L~~LA~e~- 248 (315)
+.++++++ . .+.++++.|+.+++++
T Consensus 111 ~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~ 190 (356)
T 1u94_A 111 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 190 (356)
T ss_dssp TTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222211 0 0234566777788999
Q ss_pred cEEEEEc---------cCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCC-eeEEEEE-eCC
Q psy13674 249 LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPE-AEAMFAI-TNG 308 (315)
Q Consensus 249 iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~-~~~~F~I-t~~ 308 (315)
++||.+. .+++.+|.+|+.|.|.+++|++|+|.+ |..|.++|.|++..|+ +.+.|.| .++
T Consensus 191 ~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p~~~~~~f~i~~~~ 270 (356)
T 1u94_A 191 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 270 (356)
T ss_dssp CEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCSCCEEEEEEETTT
T ss_pred CEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCccCCCCCcEEEEEEcCC
Confidence 8888532 135678999999999999999999853 3578999999999995 4599999 588
Q ss_pred Cccc
Q psy13674 309 GIAD 312 (315)
Q Consensus 309 GI~~ 312 (315)
||..
T Consensus 271 Gi~~ 274 (356)
T 1u94_A 271 GINF 274 (356)
T ss_dssp EECH
T ss_pred CcCc
Confidence 8863
No 14
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.86 E-value=1.1e-21 Score=190.19 Aligned_cols=157 Identities=28% Similarity=0.395 Sum_probs=120.3
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHH--
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNI-- 224 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl-- 224 (315)
.....|+||++.||.+|+ ||++.|.+++|+|+||+|||+||++++.+++. .+++|+|||+|.+|.+. +.
T Consensus 50 ~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-------~g~~vlyi~~E~s~~~~-~a~~ 121 (366)
T 1xp8_A 50 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-------AGGTCAFIDAEHALDPV-YARA 121 (366)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHH-HHHH
T ss_pred ccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-------CCCeEEEEECCCChhHH-HHHH
Confidence 467899999999999999 99999999999999999999999999998863 45799999999987654 21
Q ss_pred -------------------HHHHHHH------H------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 225 -------------------IAIASLV------T------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 225 -------------------~~iaer~------~------------------------------lL~~~~~~L~~LA~e~- 248 (315)
.++++++ + .+.++++.|+.+|+++
T Consensus 122 ~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~ 201 (366)
T 1xp8_A 122 LGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTG 201 (366)
T ss_dssp TTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1122211 0 0235666777779999
Q ss_pred cEEEEEc---------cCCCCcccccccccccccEEEEEEecC----------CCeEEEEEEECCCCCCe-eEEEEEe-C
Q psy13674 249 LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR----------GETRIAKIYDSPDMPEA-EAMFAIT-N 307 (315)
Q Consensus 249 iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~----------g~~R~~~I~KSp~~p~~-~~~F~It-~ 307 (315)
++||.+. .+++.+|.+|..|.|.+++|++|+|.+ |..|.++|.|++..|+. .+.|.|. +
T Consensus 202 ~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~ 281 (366)
T 1xp8_A 202 TAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYG 281 (366)
T ss_dssp CEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC------CEEEEEEEEEEESSSCCCCEEEEEEETT
T ss_pred CEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecchhcccCccccCCEEEEEEEcCCCCCCCceEEEEEEeC
Confidence 8887531 235678999999999999999999864 25789999999999965 4999998 8
Q ss_pred CCccc
Q psy13674 308 GGIAD 312 (315)
Q Consensus 308 ~GI~~ 312 (315)
.||..
T Consensus 282 ~Gi~~ 286 (366)
T 1xp8_A 282 KGFDQ 286 (366)
T ss_dssp TEECH
T ss_pred CCccc
Confidence 88753
No 15
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.85 E-value=1.6e-21 Score=187.72 Aligned_cols=157 Identities=26% Similarity=0.407 Sum_probs=120.9
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHH--
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNI-- 224 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl-- 224 (315)
.....|+||++.||.+|+ ||++.|.+++|+|+||+|||+||++++.+++. .+++|+|||+|.+|.+. +.
T Consensus 37 ~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyi~~E~~~~~~-~a~~ 108 (349)
T 2zr9_A 37 QPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-------AGGIAAFIDAEHALDPE-YAKK 108 (349)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHH-HHHH
T ss_pred ccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECCCCcCHH-HHHH
Confidence 457899999999999999 99999999999999999999999999998863 46799999999988754 31
Q ss_pred -------------------HHHHHHH------H------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 225 -------------------IAIASLV------T------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 225 -------------------~~iaer~------~------------------------------lL~~~~~~L~~LA~e~- 248 (315)
.++++.+ . .+.++++.|..+++++
T Consensus 109 lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~ 188 (349)
T 2zr9_A 109 LGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSG 188 (349)
T ss_dssp TTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 1122211 0 0233455666667888
Q ss_pred cEEEEEc---------cCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCe-eEEEEE-eCC
Q psy13674 249 LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEA-EAMFAI-TNG 308 (315)
Q Consensus 249 iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~-~~~F~I-t~~ 308 (315)
++||.+. .+++..|.+|+.|.|++++|++|+|.+ |..|.++|.|++..|+. .+.|.| .++
T Consensus 189 ~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~p~~~~~~fdi~~~~ 268 (349)
T 2zr9_A 189 TTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQ 268 (349)
T ss_dssp CEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSSCCCCEEEEEEETTS
T ss_pred CEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCccccCCEEEEEeCCCccCCCCceEEEEEEeCC
Confidence 8777531 134678999999999999999999751 34789999999999954 599999 488
Q ss_pred Cccc
Q psy13674 309 GIAD 312 (315)
Q Consensus 309 GI~~ 312 (315)
||..
T Consensus 269 Gi~~ 272 (349)
T 2zr9_A 269 GISR 272 (349)
T ss_dssp CBCH
T ss_pred CcCc
Confidence 9864
No 16
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=99.84 E-value=1.5e-21 Score=161.23 Aligned_cols=103 Identities=36% Similarity=0.530 Sum_probs=67.2
Q ss_pred cccccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHH
Q psy13674 63 EEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQ 142 (315)
Q Consensus 63 ~~~~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~e 142 (315)
...+++++..|.||+.|+.+||++.+++||+++||+|+++|+.+++++|++++|||+.+|++|++++++.++.+|.||.+
T Consensus 12 ~~~~~~~~~~~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e 91 (114)
T 1b22_A 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATE 91 (114)
T ss_dssp ----CCSCSSCCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC------
T ss_pred hHHhhccccCCccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHH
Confidence 33455566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccceecCChhHHHhhc
Q psy13674 143 VVEKRKQVFKITTGSTELDKILG 165 (315)
Q Consensus 143 ll~~~~~~~~isTG~~~LD~lL~ 165 (315)
++++|++..+|+||++.||++||
T Consensus 92 ~~~~r~~~~~itTGs~~lD~lLg 114 (114)
T 1b22_A 92 FHQRRSEIIQITTGSKELDKLLQ 114 (114)
T ss_dssp -----------------------
T ss_pred HHHHhcCCCeeccCcHHHHhhhC
Confidence 99999999999999999999984
No 17
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.80 E-value=1.1e-19 Score=205.27 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=125.3
Q ss_pred HHHHhh-cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 142 QVVEKR-KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 142 ell~~~-~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
+|++.. ....+|+||++.||++|+ ||+|+|++|+|+|+||+|||+||+|++.+++. .+.+|+|||||.+|.
T Consensus 3 ~l~~~~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~-------~Ge~vlYI~tEes~~ 75 (2050)
T 3cmu_A 3 HMGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALD 75 (2050)
T ss_dssp ---------CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTSCCC
T ss_pred chhhhhccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhc-------cCCceEEEEccCcch
Confidence 344433 356889999999999998 99999999999999999999999999999874 468999999999988
Q ss_pred hhhHHHHH---------------------HHHH------H------------------------------HHHHHHHHHH
Q psy13674 220 PLLNIIAI---------------------ASLV------T------------------------------LVGSRLPMSF 242 (315)
Q Consensus 220 ~~~Rl~~i---------------------aer~------~------------------------------lL~~~~~~L~ 242 (315)
.. |+..+ .+.+ . .+.+++..|+
T Consensus 76 ~~-ra~~lG~dl~~i~v~~p~~~e~ll~il~~L~~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~ 154 (2050)
T 3cmu_A 76 PI-YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 154 (2050)
T ss_dssp HH-HHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHH
T ss_pred hh-HHhhhccCcccceecCCCcHHHHHHHHHHHHhccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHH
Confidence 76 54321 1110 0 1245777899
Q ss_pred HHhhcc-cEEEEEcc---------CCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EE
Q psy13674 243 HITRED-LIVFFPLN---------ADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AM 302 (315)
Q Consensus 243 ~LA~e~-iaVV~~~~---------~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~ 302 (315)
++++++ ++||.+.. ++...|.+|..|.|++++|+.|++.+ |..|.++|.|++..|+.. +.
T Consensus 155 ~~ak~~gitVVlTNQv~~~~g~~fg~~~~~~gG~~l~~iaD~VI~L~r~~~vk~ge~~~G~~Rrl~V~K~R~~~p~~~~~ 234 (2050)
T 3cmu_A 155 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 234 (2050)
T ss_dssp HHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEE
T ss_pred HHHHHhCCeEEEEEecccccccccCcccccCCcchhhhhCcEEEEEEeccccccccccccceEEEEEEeccCCCCCceEE
Confidence 999999 88886432 23467899999999999999998732 457999999999988775 99
Q ss_pred EEEe-CCCcc
Q psy13674 303 FAIT-NGGIA 311 (315)
Q Consensus 303 F~It-~~GI~ 311 (315)
|.|+ +.||.
T Consensus 235 F~I~~g~GI~ 244 (2050)
T 3cmu_A 235 FQILYGEGIN 244 (2050)
T ss_dssp EEEETTTEEC
T ss_pred EEEEcCCCeE
Confidence 9996 55764
No 18
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.78 E-value=1.4e-18 Score=154.09 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=112.7
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH-----
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII----- 225 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~----- 225 (315)
..++||++.||++|+||++.|+++.|+|+||+|||+||++++.+++. .+++++|+++|.+. . ++.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-------~~~~v~~~~~e~~~--~-~~~~~~~~ 72 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-------MGEPGIYVALEEHP--V-QVRQNMAQ 72 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSSCH--H-HHHHHHHT
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEccCCH--H-HHHHHHHH
Confidence 47999999999999999999999999999999999999999988752 36789999988531 1 111
Q ss_pred -------------------------------------------------HHHHHHHH------------------HHHHH
Q psy13674 226 -------------------------------------------------AIASLVTL------------------VGSRL 238 (315)
Q Consensus 226 -------------------------------------------------~iaer~~l------------------L~~~~ 238 (315)
++.++++. ..+++
T Consensus 73 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 73 FGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp TTCCCHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred cCCCHHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 11111110 35677
Q ss_pred HHHHHHhhcc-cEEEEEccC-CCCcccccccccccccEEEEEEec--CC-CeEEEEEEECCCCCCe--eEEEEEeCCCcc
Q psy13674 239 PMSFHITRED-LIVFFPLNA-DPKKPVGGNIMAHASTTRISLRKG--RG-ETRIAKIYDSPDMPEA--EAMFAITNGGIA 311 (315)
Q Consensus 239 ~~L~~LA~e~-iaVV~~~~~-~~~~PalG~~wah~~~tRl~L~k~--~g-~~R~~~I~KSp~~p~~--~~~F~It~~GI~ 311 (315)
..|.++++++ ++||.+... ....+..|..|.|.++++++|++. .+ ..|.++|.|+++.+.. ...|.|+++||+
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~ 232 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGII 232 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEEEETTEEEEEEEEEEETTSCCCCBCEEEEEETTEEE
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEEccCCeeEEEEEEEECCCCCCCCceEEEEEcCCCEE
Confidence 7888888888 777754321 111223345699999999999875 23 3699999999998864 499999999987
Q ss_pred cC
Q psy13674 312 DA 313 (315)
Q Consensus 312 ~~ 313 (315)
..
T Consensus 233 ~~ 234 (247)
T 2dr3_A 233 VY 234 (247)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 19
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.77 E-value=3.6e-19 Score=199.09 Aligned_cols=157 Identities=25% Similarity=0.379 Sum_probs=124.4
Q ss_pred cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHH-
Q psy13674 148 KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII- 225 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~- 225 (315)
.....|+||++.||++|+ ||+++|.+++|+|+||+|||+||+|+|.+++. .+++|+|||+|.++.+. +..
T Consensus 359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-------~G~~vlyis~E~s~~~~-~a~~ 430 (1706)
T 3cmw_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPI-YARK 430 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEECTTSCCCHH-HHHH
T ss_pred ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------hCCCeEEEEccCchHHH-HHHH
Confidence 467899999999999999 99999999999999999999999999999874 46799999999988754 321
Q ss_pred --------------------HHHHHH----H--------------------------------HHHHHHHHHHHHhhcc-
Q psy13674 226 --------------------AIASLV----T--------------------------------LVGSRLPMSFHITRED- 248 (315)
Q Consensus 226 --------------------~iaer~----~--------------------------------lL~~~~~~L~~LA~e~- 248 (315)
++++++ + .+.++++.|+.+|+++
T Consensus 431 lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~ 510 (1706)
T 3cmw_A 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 510 (1706)
T ss_dssp TTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 122110 0 0235666777778999
Q ss_pred cEEEEEc---------cCCCCcccccccccccccEEEEEEecC---------CCeEEEEEEECCCCCCee-EEEEEe-CC
Q psy13674 249 LIVFFPL---------NADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPDMPEAE-AMFAIT-NG 308 (315)
Q Consensus 249 iaVV~~~---------~~~~~~PalG~~wah~~~tRl~L~k~~---------g~~R~~~I~KSp~~p~~~-~~F~It-~~ 308 (315)
++||... .+++.+|++|..|.|.+++|++|+|.+ +..|.++|.|++..|++. +.|.|. +.
T Consensus 511 v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~~~~~~F~I~~~~ 590 (1706)
T 3cmw_A 511 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 590 (1706)
T ss_dssp CEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTT
T ss_pred CEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecCCCCCCCeEEEEEecCC
Confidence 8888531 134578999999999999999998742 245789999999999876 999964 77
Q ss_pred Cccc
Q psy13674 309 GIAD 312 (315)
Q Consensus 309 GI~~ 312 (315)
||..
T Consensus 591 Gi~~ 594 (1706)
T 3cmw_A 591 GINF 594 (1706)
T ss_dssp EECH
T ss_pred Cccc
Confidence 7763
No 20
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.76 E-value=2.6e-18 Score=192.29 Aligned_cols=193 Identities=25% Similarity=0.401 Sum_probs=140.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhHhccccch--HHHHHHhh-cCccceecCChhHHHhhc-CCCCcccEEEEecCCCCChh
Q psy13674 110 KMSQIKGFSEAKVDKIKEACMKICDNSFLT--AAQVVEKR-KQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKT 185 (315)
Q Consensus 110 ~L~~~~gis~~~v~ki~~~~~~~~~~~~~t--A~ell~~~-~~~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKT 185 (315)
....+-|+++.+..+ ++++...+...|-+ ...+-+.. ....+++||+.+||.+|| ||+|.|.++++|||||||||
T Consensus 1018 ~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1018 STGSMSAIDENKQKA-LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp ------CTTHHHHHH-HHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred eeeecCCccHHHHHH-HHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 334555777777664 56555544332322 22222222 348899999999999996 99999999999999999999
Q ss_pred hHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh---------------------hhHHHHHHHH--------------
Q psy13674 186 QLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP---------------------LLNIIAIASL-------------- 230 (315)
Q Consensus 186 qLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~---------------------~~Rl~~iaer-------------- 230 (315)
+||++++.+.+. .++.++||+.++.+++ + |..+++.+
T Consensus 1097 ~la~~~~~~~~~-------~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e-~~l~~~~~~ar~~~~~~i~~d~ 1168 (1706)
T 3cmw_A 1097 TLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE-QALEICDALARSGAVDVIVVDS 1168 (1706)
T ss_dssp HHHHHHHHHHHH-------TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHHHHHHTCCSEEEESC
T ss_pred HHHHHHHHHhhh-------cCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchH-HHHHHHHHHHHhcCCeEEEeCc
Confidence 999999998874 4789999999986622 2 22222211
Q ss_pred ------------------HH----HHHHHHHHHHHHhhcc-cEEEEE---------ccCCCCcccccccccccccEEEEE
Q psy13674 231 ------------------VT----LVGSRLPMSFHITRED-LIVFFP---------LNADPKKPVGGNIMAHASTTRISL 278 (315)
Q Consensus 231 ------------------~~----lL~~~~~~L~~LA~e~-iaVV~~---------~~~~~~~PalG~~wah~~~tRl~L 278 (315)
.+ +++++++.|..+++.+ |+||.+ +.+++.+|.+|+.++|..++|+.|
T Consensus 1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~~~~~~~~~~~~~~~~~gg~~l~~~~~~R~~~ 1248 (1706)
T 3cmw_A 1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 1248 (1706)
T ss_dssp GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEECEEECTTCCSBCCEEESSCSHHHHHEEEEEEE
T ss_pred hHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEeccccccchheecccccccccchhhhHHHHHHHH
Confidence 01 2677788888888888 888742 445789999999999999999999
Q ss_pred Eec----CC------CeEEEEEEECCCCCCeeEEEEEe-CCCcc
Q psy13674 279 RKG----RG------ETRIAKIYDSPDMPEAEAMFAIT-NGGIA 311 (315)
Q Consensus 279 ~k~----~g------~~R~~~I~KSp~~p~~~~~F~It-~~GI~ 311 (315)
+|. +| +.|+++|.++|+.|..++.|.|. ..|+.
T Consensus 1249 r~~~~~~~g~~~~~~~~rv~~~~~~~~~p~~~~~~~i~~~~~~~ 1292 (1706)
T 3cmw_A 1249 RRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 1292 (1706)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEEC
T ss_pred HhhhhhcccccccccceeEEEeecCCCCccceeeEEEEeccccc
Confidence 975 45 58999999999999999999765 55654
No 21
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.62 E-value=4.5e-15 Score=147.76 Aligned_cols=159 Identities=10% Similarity=0.101 Sum_probs=114.2
Q ss_pred cccchHHHHHHh------hcCccceec-CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCC
Q psy13674 135 NSFLTAAQVVEK------RKQVFKITT-GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGG 207 (315)
Q Consensus 135 ~~~~tA~ell~~------~~~~~~isT-G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~ 207 (315)
.++.++.++++. ......++| |++.||++| ||+++|.++.|+|+||+|||+||+++|.+++.. .+.
T Consensus 200 ~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~------~g~ 272 (503)
T 1q57_A 200 DGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA------MGK 272 (503)
T ss_dssp SSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT------SCC
T ss_pred HHhcChHHHHHHHHhhhcccccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh------cCC
Confidence 344555554432 245678999 999999999 699999999999999999999999999998741 256
Q ss_pred eEEEEeCCCCCC--hhhHHH-------------------------------------------------HH---HHHH--
Q psy13674 208 KVIYVDSENTLY--PLLNII-------------------------------------------------AI---ASLV-- 231 (315)
Q Consensus 208 ~vvyIDtE~~F~--~~~Rl~-------------------------------------------------~i---aer~-- 231 (315)
+|+||+.|.+-. .. |+. ++ +++.
T Consensus 273 ~vl~~s~E~s~~~l~~-r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~ 351 (503)
T 1q57_A 273 KVGLAMLEESVEETAE-DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 351 (503)
T ss_dssp CEEEEESSSCHHHHHH-HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHH
T ss_pred cEEEEeccCCHHHHHH-HHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 899999885310 00 110 00 0000
Q ss_pred --HH-----------------------HHHHHHHHHHHhhcc-cEEEEEcc--C--------CCCcccc-----cccccc
Q psy13674 232 --TL-----------------------VGSRLPMSFHITRED-LIVFFPLN--A--------DPKKPVG-----GNIMAH 270 (315)
Q Consensus 232 --~l-----------------------L~~~~~~L~~LA~e~-iaVV~~~~--~--------~~~~Pal-----G~~wah 270 (315)
+. +.++++.|+++|+++ ++||.... . +...|.+ ...|.|
T Consensus 352 ~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~ 431 (503)
T 1q57_A 352 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 431 (503)
T ss_dssp TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHH
T ss_pred hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhe
Confidence 00 567899999999999 98886432 1 1234543 345889
Q ss_pred cccEEEEEEecCC----CeEEEEEEECC-CCCCeeE
Q psy13674 271 ASTTRISLRKGRG----ETRIAKIYDSP-DMPEAEA 301 (315)
Q Consensus 271 ~~~tRl~L~k~~g----~~R~~~I~KSp-~~p~~~~ 301 (315)
.+++.++|++.+. ..|.+.|.|++ +.|.+.+
T Consensus 432 ~aD~vi~l~r~~~~~~~~~~~l~v~K~R~~G~~g~~ 467 (503)
T 1q57_A 432 LSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 467 (503)
T ss_dssp HCSEEEEEEECSSSSCTTEEEEEEEEETTTCCCEEE
T ss_pred cCcEEEEEEeCCcCCCCCeEEEEEEeccCCCCCCce
Confidence 9999999987542 47899999999 7898875
No 22
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.62 E-value=3.7e-15 Score=130.22 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=108.3
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC-----------
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY----------- 219 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~----------- 219 (315)
..++||++.||++++||++.|.++.|+|++|+|||+|+.+++....- .+++++|++++....
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~ 75 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-------DGDPCIYVTTEESRDSIIRQAKQFNW 75 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-------HTCCEEEEESSSCHHHHHHHHHHTTC
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEcccCHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999876541 356888988775311
Q ss_pred ------------------------------hhh---HHHHHHHH--HH--H----------------HHHHHHHHHHHhh
Q psy13674 220 ------------------------------PLL---NIIAIASL--VT--L----------------VGSRLPMSFHITR 246 (315)
Q Consensus 220 ------------------------------~~~---Rl~~iaer--~~--l----------------L~~~~~~L~~LA~ 246 (315)
... ++.+.+.. .. + ..+++..|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~ 155 (235)
T 2w0m_A 76 DFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLN 155 (235)
T ss_dssp CCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHH
T ss_pred hHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHH
Confidence 000 00111110 01 1 4678888888988
Q ss_pred cc-cEEEEEccCC--CCcccccccccccccEEEEEEecC--C-CeEEEEEEECCCCCCe--eEEEEEeCC-Cccc
Q psy13674 247 ED-LIVFFPLNAD--PKKPVGGNIMAHASTTRISLRKGR--G-ETRIAKIYDSPDMPEA--EAMFAITNG-GIAD 312 (315)
Q Consensus 247 e~-iaVV~~~~~~--~~~PalG~~wah~~~tRl~L~k~~--g-~~R~~~I~KSp~~p~~--~~~F~It~~-GI~~ 312 (315)
++ ++||.+.... .... .+..|.+.++..++|++.. + ..|.++|.|++..+.. ...|+|+++ ||+-
T Consensus 156 ~~~~~vi~~~h~~~~~~~~-~~~~~~~~~d~vi~l~~~~~~~~~~r~l~v~K~r~~~~~~~~~~f~i~~~~Gi~~ 229 (235)
T 2w0m_A 156 KWNFTIYATSQYAITTSQA-FGFGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVL 229 (235)
T ss_dssp HTTEEEEEEEC------------CHHHHCSEEEEEEEEEETTEEEEEEEEEEETTCCCCCSCEEEEEETTTEEEE
T ss_pred hCCCeEEEEeccCcccccc-cccchheeeeEEEEEEEEecCCcEEEEEEEEeccCCcccceeEEEEEcCCCCeEE
Confidence 87 7776532211 0111 1156889999999998752 3 3689999999998864 499999999 9864
No 23
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.61 E-value=1.7e-14 Score=141.97 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC-----------
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL----------- 218 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F----------- 218 (315)
...|+||++.||+++ ||+++|.++.|+|+||+|||+||+++|.+++. ..+.+|+||+.|.+.
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~------~~g~~vl~~slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL------KEGVGVGIYSLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------hCCCeEEEEECCCCHHHHHHHHHHHH
Confidence 468999999999999 99999999999999999999999999998864 135678888887531
Q ss_pred -----------------------------------------ChhhHHHHHHHHH----H---------------------
Q psy13674 219 -----------------------------------------YPLLNIIAIASLV----T--------------------- 232 (315)
Q Consensus 219 -----------------------------------------~~~~Rl~~iaer~----~--------------------- 232 (315)
+.. .+...++++ +
T Consensus 253 ~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~-~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~ 331 (444)
T 2q6t_A 253 ARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLM-EVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSG 331 (444)
T ss_dssp TTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHH-HHHHHHHHHHHHSCCCEEEEECGGGCBCC------
T ss_pred cCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCC
Confidence 111 111111110 0
Q ss_pred -----HHHHHHHHHHHHhhcc-cEEEEEcc-------CCCCcccccc-----cccccccEEEEEEecC--------CCeE
Q psy13674 233 -----LVGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGGN-----IMAHASTTRISLRKGR--------GETR 286 (315)
Q Consensus 233 -----lL~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG~-----~wah~~~tRl~L~k~~--------g~~R 286 (315)
-+.++++.|+.+|+++ ++||.... ...++|.++. .|.+.++++++|++.+ ...|
T Consensus 332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~ 411 (444)
T 2q6t_A 332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIA 411 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCSEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCCeE
Confidence 0346788999999999 88886432 1135677665 5789999999998752 1478
Q ss_pred EEEEEECCCCCCeeEEEEEe
Q psy13674 287 IAKIYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 287 ~~~I~KSp~~p~~~~~F~It 306 (315)
.+.|.|+++.|.+.+.+...
T Consensus 412 ~l~i~K~R~g~~g~~~l~f~ 431 (444)
T 2q6t_A 412 EIIVGKQRNGPTGTVELQFH 431 (444)
T ss_dssp EEEEEECSSSCCEEEEEEEE
T ss_pred EEEEEecCCCCceEEEEEEE
Confidence 99999999999988665544
No 24
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.61 E-value=1.5e-14 Score=136.45 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=109.4
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC--hhhHHH-
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY--PLLNII- 225 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~--~~~Rl~- 225 (315)
....++||++.||+++ ||+++|.++.|+|+||+|||+||+++|.+++. .+.+|+||+.|.+.. .. |+.
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g~~vl~~slE~s~~~l~~-R~~~ 117 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSLEMGKKENIK-RLIV 117 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TTCEEEEEESSSCHHHHHH-HHHH
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEECCCCHHHHHH-HHHH
Confidence 3578999999999999 99999999999999999999999999998764 236888888874310 00 111
Q ss_pred ---------------------------------------------------HHHHHH------H--H-------------
Q psy13674 226 ---------------------------------------------------AIASLV------T--L------------- 233 (315)
Q Consensus 226 ---------------------------------------------------~iaer~------~--l------------- 233 (315)
+.++++ + +
T Consensus 118 ~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~ 197 (315)
T 3bh0_A 118 TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK 197 (315)
T ss_dssp HHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSC
T ss_pred HHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCC
Confidence 111110 1 1
Q ss_pred --------HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCccccc-----ccccccccEEEEEEecC--------CC
Q psy13674 234 --------VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGG-----NIMAHASTTRISLRKGR--------GE 284 (315)
Q Consensus 234 --------L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG-----~~wah~~~tRl~L~k~~--------g~ 284 (315)
+.++++.|+.+|+++ |+||.... ...+.|.++ ..|.|.+++.++|++.+ ..
T Consensus 198 ~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~ 277 (315)
T 3bh0_A 198 ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKN 277 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCCC
Confidence 677889999999999 88886432 112456544 35889999999998742 24
Q ss_pred eEEEEEEECCCCCCeeEEEEE
Q psy13674 285 TRIAKIYDSPDMPEAEAMFAI 305 (315)
Q Consensus 285 ~R~~~I~KSp~~p~~~~~F~I 305 (315)
.+.+.|.|+++.|.+.+.+..
T Consensus 278 ~~~l~v~K~R~G~~g~~~l~f 298 (315)
T 3bh0_A 278 IVEVIIAKHRDGPVGTVSLAF 298 (315)
T ss_dssp EEEEEEEEETTSCCEEEEEEE
T ss_pred cEEEEEECCcCCCCceEEEEE
Confidence 788999999999988755443
No 25
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.53 E-value=6.3e-14 Score=138.26 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=108.6
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh-hhHHH---
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP-LLNII--- 225 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~-~~Rl~--- 225 (315)
...|+||++.||+++ ||+++|.++.|+|+||+|||+||+++|.+++. ..+.+|+|++.|.+... ..|+.
T Consensus 183 ~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~------~~g~~Vl~~s~E~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 183 ITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT------KTNENVAIFSLEMSAQQLVMRMLCAE 255 (454)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH------HSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH------hCCCcEEEEECCCCHHHHHHHHHHHH
Confidence 578999999999999 89999999999999999999999999998763 12457889888853210 00111
Q ss_pred -----------------------------------------------HHHHHH----HH---------------------
Q psy13674 226 -----------------------------------------------AIASLV----TL--------------------- 233 (315)
Q Consensus 226 -----------------------------------------------~iaer~----~l--------------------- 233 (315)
..++++ +.
T Consensus 256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~ 335 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR 335 (454)
T ss_dssp HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence 111110 00
Q ss_pred ---HHHHHHHHHHHhhcc-cEEEEEcc--CC-----CCcccccc-----cccccccEEEEEEecC--------CCeEEEE
Q psy13674 234 ---VGSRLPMSFHITRED-LIVFFPLN--AD-----PKKPVGGN-----IMAHASTTRISLRKGR--------GETRIAK 289 (315)
Q Consensus 234 ---L~~~~~~L~~LA~e~-iaVV~~~~--~~-----~~~PalG~-----~wah~~~tRl~L~k~~--------g~~R~~~ 289 (315)
+.++++.|+.+|+++ ++||.... .+ .++|.++. .|.|.+++.++|++.+ ...|.+.
T Consensus 336 ~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~~~~~~~~~~l~ 415 (454)
T 2r6a_A 336 QQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEII 415 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-------CCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCcccCCCCeEEEE
Confidence 567888999999999 88886432 11 23476543 6889999999998753 1468899
Q ss_pred EEECCCCCCeeEEEEEe
Q psy13674 290 IYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 290 I~KSp~~p~~~~~F~It 306 (315)
|.|+++.|.+.+.+...
T Consensus 416 i~K~R~G~~g~v~l~f~ 432 (454)
T 2r6a_A 416 IAKQRNGPVGTVQLAFI 432 (454)
T ss_dssp EEEESSSCCEEEEEEEE
T ss_pred EecccCCCCeEEEEEEE
Confidence 99999999887555443
No 26
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.52 E-value=2.1e-13 Score=134.97 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=111.0
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC-----------
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT----------- 217 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~----------- 217 (315)
....++||++.||+++ ||+++|.++.|+|+||+|||+||+++|.+++. .+.+|+||+.|.+
T Consensus 176 ~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~-------~g~~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 176 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-------TTCEEEEECSSSCTTHHHHHHHHH
T ss_pred CCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-------cCCEEEEEECCCCHHHHHHHHHHH
Confidence 4578999999999999 79999999999999999999999999999864 2567777777742
Q ss_pred -------------------------------------------CChhhHHHHHHHHH------H--H-------------
Q psy13674 218 -------------------------------------------LYPLLNIIAIASLV------T--L------------- 233 (315)
Q Consensus 218 -------------------------------------------F~~~~Rl~~iaer~------~--l------------- 233 (315)
++.+ .+...++++ + +
T Consensus 248 ~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~-~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~ 326 (444)
T 3bgw_A 248 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN-YIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK 326 (444)
T ss_dssp HSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHH-HHHHHHHHHHHHSCSSCEEEEEECSTTSBCSC
T ss_pred HcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHHhCCCCeEEEEecHHhccCCC
Confidence 1111 111111111 1 1
Q ss_pred --------HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCcccccc-----cccccccEEEEEEecC--------CC
Q psy13674 234 --------VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGGN-----IMAHASTTRISLRKGR--------GE 284 (315)
Q Consensus 234 --------L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG~-----~wah~~~tRl~L~k~~--------g~ 284 (315)
+.++++.|+.+|+++ |+||.... ...++|.++. .+.|.+++.++|++.+ ..
T Consensus 327 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~ 406 (444)
T 3bgw_A 327 ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKN 406 (444)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCC
Confidence 678889999999999 88886432 1234576554 5899999999998752 13
Q ss_pred eEEEEEEECCCCCCeeEEEEEe
Q psy13674 285 TRIAKIYDSPDMPEAEAMFAIT 306 (315)
Q Consensus 285 ~R~~~I~KSp~~p~~~~~F~It 306 (315)
.+.+.|.|+++.|.+.+.+...
T Consensus 407 ~~~l~i~K~R~G~~g~v~l~f~ 428 (444)
T 3bgw_A 407 IVEVIIAKHRDGPVGTVSLAFI 428 (444)
T ss_dssp EEEEEEEEESSSCCEEEEEEEE
T ss_pred eEEEEEEcccCCCCeEEEEEEE
Confidence 6889999999999988665544
No 27
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.50 E-value=2.3e-13 Score=136.52 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=106.3
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHH
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIA 228 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~ia 228 (315)
....++||++.||++|+||++.|+++.|.|++|+|||+|+++++..... .+.+++|++.+.+ +. .+...+
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-------~G~~vi~~~~ee~--~~-~l~~~~ 328 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-------NKERAILFAYEES--RA-QLLRNA 328 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-------TTCCEEEEESSSC--HH-HHHHHH
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-------CCCCEEEEEEeCC--HH-HHHHHH
Confidence 3467899999999999999999999999999999999999999876531 2457899998864 22 222211
Q ss_pred HHH----------H----------------------------------------H--------HHHHHHHHHHHhhcc-c
Q psy13674 229 SLV----------T----------------------------------------L--------VGSRLPMSFHITRED-L 249 (315)
Q Consensus 229 er~----------~----------------------------------------l--------L~~~~~~L~~LA~e~-i 249 (315)
.++ + + ..+.+..|.+.+++. +
T Consensus 329 ~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 329 YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp HTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 110 0 0 122333333444556 6
Q ss_pred EEEEEccC--CCCccccc-ccccccccEEEEEEecC---CCeEEEEEEECCCCCC-ee-EEEEEeCCCcc
Q psy13674 250 IVFFPLNA--DPKKPVGG-NIMAHASTTRISLRKGR---GETRIAKIYDSPDMPE-AE-AMFAITNGGIA 311 (315)
Q Consensus 250 aVV~~~~~--~~~~PalG-~~wah~~~tRl~L~k~~---g~~R~~~I~KSp~~p~-~~-~~F~It~~GI~ 311 (315)
+||.+... .....++. ..+.|+++..+.|++.+ ...|.++|+|++..|. .+ ..|+|++.||+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~ 478 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPD 478 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEEETTEEEEEEEEEEESSSCCCCBCEEEEECSSCEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEEeCCEEEEEEEEEECCCCCCCCCEEEEEEcCCCEE
Confidence 66643221 11111222 67899999999998753 3479999999999997 34 99999999987
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.49 E-value=3.2e-13 Score=119.68 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=99.6
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC----------
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL---------- 218 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F---------- 218 (315)
...+++||++.||++|+||++.|+++-|.||+|+|||+|+..++....++ .+++++|++.+...
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE------YGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH------HCCCEEEEESSSCHHHHHHHHHTT
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEccCCHHHHHHHHHHc
Confidence 45789999999999999999999999999999999999999998544311 34567888776421
Q ss_pred --Chhh-------------------------------HHHHHHHHH----HH--------------H---------HH-H
Q psy13674 219 --YPLL-------------------------------NIIAIASLV----TL--------------V---------GS-R 237 (315)
Q Consensus 219 --~~~~-------------------------------Rl~~iaer~----~l--------------L---------~~-~ 237 (315)
.++. .+.++.++. .. + .+ +
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l 161 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVL 161 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHH
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHH
Confidence 1110 011111111 00 2 12 3
Q ss_pred HHHHHHHhhcccEEEEEcc-CCCCc-ccccccccccc-cEEEEEEec--CC-CeEEEEEEECCCCCCe--eEEEEEeCCC
Q psy13674 238 LPMSFHITREDLIVFFPLN-ADPKK-PVGGNIMAHAS-TTRISLRKG--RG-ETRIAKIYDSPDMPEA--EAMFAITNGG 309 (315)
Q Consensus 238 ~~~L~~LA~e~iaVV~~~~-~~~~~-PalG~~wah~~-~tRl~L~k~--~g-~~R~~~I~KSp~~p~~--~~~F~It~~G 309 (315)
...++.+.+..++||.+.. ..... ...+....+.+ +..++|++. .+ ..|.++|.|.+..+.. ...|.|+++|
T Consensus 162 ~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~~~~~~~~~r~l~i~K~r~~~~~~~~~~~~i~~~G 241 (251)
T 2ehv_A 162 LKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNG 241 (251)
T ss_dssp HHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTE
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEeeeccCCeeEEEEEEEEccCCCcCCceEEEEECCCC
Confidence 3344444333355554322 11110 22334456777 888888753 22 3688999999988753 4999999999
Q ss_pred ccc
Q psy13674 310 IAD 312 (315)
Q Consensus 310 I~~ 312 (315)
|.=
T Consensus 242 i~v 244 (251)
T 2ehv_A 242 IVV 244 (251)
T ss_dssp EEE
T ss_pred eEE
Confidence 863
No 29
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.42 E-value=1.6e-12 Score=124.84 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=107.8
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC-----------
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN----------- 216 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~----------- 216 (315)
.....|+||++.||+++ ||+++|.++.|+|+||+|||+|++++|.+++. .+.+|+||+.|-
T Consensus 24 ~~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fSlEms~~ql~~Rlls 95 (338)
T 4a1f_A 24 LEVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFSLEMSAEQLALRALS 95 (338)
T ss_dssp TCCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEESSSCHHHHHHHHHH
T ss_pred CCcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCCCCHHHHHHHHHH
Confidence 35788999999999999 69999999999999999999999999998763 244555665553
Q ss_pred -----------------------------------------CCChhhHHHHHHHHH-----HH-----------------
Q psy13674 217 -----------------------------------------TLYPLLNIIAIASLV-----TL----------------- 233 (315)
Q Consensus 217 -----------------------------------------~F~~~~Rl~~iaer~-----~l----------------- 233 (315)
.++++ .|...++++ ++
T Consensus 96 ~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~ 174 (338)
T 4a1f_A 96 DLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKAT 174 (338)
T ss_dssp HHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHH
T ss_pred HhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCC
Confidence 33333 332222221 11
Q ss_pred ------HHHHHHHHHHHhhcc-cEEEEEcc-------CCCCcccccc-----cccccccEEEEEEecC------------
Q psy13674 234 ------VGSRLPMSFHITRED-LIVFFPLN-------ADPKKPVGGN-----IMAHASTTRISLRKGR------------ 282 (315)
Q Consensus 234 ------L~~~~~~L~~LA~e~-iaVV~~~~-------~~~~~PalG~-----~wah~~~tRl~L~k~~------------ 282 (315)
+.++++.|+.+|+++ |+||+.-. ...+.|.+.. .+..-+++.++|+|.+
T Consensus 175 ~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~ 254 (338)
T 4a1f_A 175 KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKID 254 (338)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEECHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEecchhccccccccccc
Confidence 778999999999999 88886422 1235676543 5788889999998741
Q ss_pred -----C-C------------------------eEEEEEEECCCCCCeeEEEEE
Q psy13674 283 -----G-E------------------------TRIAKIYDSPDMPEAEAMFAI 305 (315)
Q Consensus 283 -----g-~------------------------~R~~~I~KSp~~p~~~~~F~I 305 (315)
+ + .-.+.|.|+++.|.+.+.+.-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~l~f 307 (338)
T 4a1f_A 255 KLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRF 307 (338)
T ss_dssp HHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEEEEE
T ss_pred ccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEEEEE
Confidence 1 1 235578899999999866543
No 30
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.42 E-value=4.6e-12 Score=116.90 Aligned_cols=159 Identities=10% Similarity=0.093 Sum_probs=107.2
Q ss_pred cCccceec-CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC--------
Q psy13674 148 KQVFKITT-GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL-------- 218 (315)
Q Consensus 148 ~~~~~isT-G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F-------- 218 (315)
.....|+| |++.||.++ +|++.|.++.|+|+||+|||+|+++++..... ..+.+++|++.|.+.
T Consensus 12 ~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~------~~G~~v~~~~~e~~~~~~~~r~~ 84 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT------AMGKKVGLAMLEESVEETAEDLI 84 (296)
T ss_dssp CCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH------TSCCCEEEEESSSCHHHHHHHHH
T ss_pred CCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH------HcCCeEEEEeCcCCHHHHHHHHH
Confidence 56788999 999999999 99999999999999999999999999987642 113367787766321
Q ss_pred ----------------------------------------------ChhhHHHHHHHHHHH-------------------
Q psy13674 219 ----------------------------------------------YPLLNIIAIASLVTL------------------- 233 (315)
Q Consensus 219 ----------------------------------------------~~~~Rl~~iaer~~l------------------- 233 (315)
++. .+.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~-~l~~~~~a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 85 GLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD-RLLAKLAYMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHH-HHHHHHHHHHHTTCCSEEEEEEEC------
T ss_pred HHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHH-HHHHHHHHHHHhcCCCEEEEcCccccCCCC
Confidence 111 11111110000
Q ss_pred --------HHHHHHHHHHHhhcc-cEEEEEccC----------CCCcccccc-----cccccccEEEEEEecCC----Ce
Q psy13674 234 --------VGSRLPMSFHITRED-LIVFFPLNA----------DPKKPVGGN-----IMAHASTTRISLRKGRG----ET 285 (315)
Q Consensus 234 --------L~~~~~~L~~LA~e~-iaVV~~~~~----------~~~~PalG~-----~wah~~~tRl~L~k~~g----~~ 285 (315)
+.+++..|+++|+++ ++||..... ....|.++. .+.+.++..++|.+.+. ..
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~~~~~ 243 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL 243 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccCCCCe
Confidence 234777899999988 777753221 134565554 67889999999987542 46
Q ss_pred EEEEEEECC-CCCCee---EEEEEeCCCcccCC
Q psy13674 286 RIAKIYDSP-DMPEAE---AMFAITNGGIADAK 314 (315)
Q Consensus 286 R~~~I~KSp-~~p~~~---~~F~It~~GI~~~~ 314 (315)
|.+.|.|++ +.|.+. ..|.++..|+.+++
T Consensus 244 ~~l~i~K~R~~g~~g~~~~~~f~~~~~~f~~~~ 276 (296)
T 1cr0_A 244 VLVRILKCRFTGDTGIAGYMEYNKETGWLEPSS 276 (296)
T ss_dssp EEEEEEEETTTCCCEEEEEEEECTTTCCEEECC
T ss_pred EEEEEEccccCCCCCceEEEEEEcCccEEecCC
Confidence 899999999 588776 46667788887764
No 31
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.35 E-value=4.1e-12 Score=116.66 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=103.2
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCC---CCCeEEEEeCCCCCChh-hHHHH
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY---TGGKVIYVDSENTLYPL-LNIIA 226 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg---~~~~vvyIDtE~~F~~~-~Rl~~ 226 (315)
..++||++.||.+| ||++.|.++.|+|++|+|||+|+++++..++....+.|. ..++++|++.|.....- .|+..
T Consensus 11 ~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 11 EAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp HHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred HHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 45899999999999 699999999999999999999999999866421110110 14689999999754210 13332
Q ss_pred HH------------HHH---------------H-H-------------------------------HHHHHHHHHHHhhc
Q psy13674 227 IA------------SLV---------------T-L-------------------------------VGSRLPMSFHITRE 247 (315)
Q Consensus 227 ia------------er~---------------~-l-------------------------------L~~~~~~L~~LA~e 247 (315)
+. +.+ + + +.++++.|++++++
T Consensus 90 ~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 90 LGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 21 111 0 0 37788899999988
Q ss_pred c-cEEEEEcc--------CCCC---cccccccccccccEEEEEEecC----------CC----eEEEEEEECCCCCCee-
Q psy13674 248 D-LIVFFPLN--------ADPK---KPVGGNIMAHASTTRISLRKGR----------GE----TRIAKIYDSPDMPEAE- 300 (315)
Q Consensus 248 ~-iaVV~~~~--------~~~~---~PalG~~wah~~~tRl~L~k~~----------g~----~R~~~I~KSp~~p~~~- 300 (315)
+ ++||.... +++. .+.++..+.+.+....++.+.. .+ ...++|.|++..|++.
T Consensus 170 ~g~tvi~i~H~~~~~~~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~v~K~~~~~~~~~ 249 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFAD 249 (279)
T ss_dssp HCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEECSSSSCCCC
T ss_pred cCCEEEEEecCCCcccccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEEeeeccccCCCCCCc
Confidence 7 77774211 1111 1234556665554444454321 11 2336899999999887
Q ss_pred EEEEEeCCCcccC
Q psy13674 301 AMFAITNGGIADA 313 (315)
Q Consensus 301 ~~F~It~~GI~~~ 313 (315)
..|.+.+.|+-.+
T Consensus 250 ~~~~~~~~G~l~~ 262 (279)
T 1nlf_A 250 RWFRRHDGGVLKP 262 (279)
T ss_dssp EEEEECGGGCEEE
T ss_pred eEEEEcCCeeEec
Confidence 7799998887544
No 32
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.25 E-value=3.9e-11 Score=111.49 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=50.1
Q ss_pred ceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 152 ~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.++||++.||++|+||++.|+++.|.|.||+|||.||+|++.+..- .+.+|+||..+.
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-------~Ge~~~~~~~~e 59 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-------SDNLVGMFSISY 59 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-------TTCEEEEEECSS
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-------CCCcEEEEEEeC
Confidence 4799999999999999999999999999999999999999887642 456677766664
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.04 E-value=9.7e-11 Score=112.29 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=87.9
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC--CCC---CC--hhhH
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS--ENT---LY--PLLN 223 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt--E~~---F~--~~~R 223 (315)
..++||++.||++| ||++.|.+++|+|+||+|||+||++++.+ . +++|+||+. +.. +. .+..
T Consensus 104 ~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~-~---------G~~VlyIs~~~eE~v~~~~~~le~~ 172 (331)
T 2vhj_A 104 GELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA-L---------GGKDKYATVRFGEPLSGYNTDFNVF 172 (331)
T ss_dssp TTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH-H---------HTTSCCEEEEBSCSSTTCBCCHHHH
T ss_pred hccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh-C---------CCCEEEEEecchhhhhhhhcCHHHH
Confidence 34789999999999 99999999999999999999999999875 1 345677776 211 11 1101
Q ss_pred HHHHHHHH----------------------------HHHHHHHHHHHHHhhcc-cEEEEEccCCCCcccccccc-----c
Q psy13674 224 IIAIASLV----------------------------TLVGSRLPMSFHITRED-LIVFFPLNADPKKPVGGNIM-----A 269 (315)
Q Consensus 224 l~~iaer~----------------------------~lL~~~~~~L~~LA~e~-iaVV~~~~~~~~~PalG~~w-----a 269 (315)
+..+.+.+ ..+.+++..|..++++. ++|+.........|+..... .
T Consensus 173 l~~i~~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s~deal~~l~~~~~~~ 252 (331)
T 2vhj_A 173 VDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRA 252 (331)
T ss_dssp HHHHHHHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSSCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcccchhHHHHHHHHHhc
Confidence 11111111 11667888888889988 88776544322233321111 1
Q ss_pred cc---------ccEEEEEEe-cCCCeEEEEEEECCCCCCe
Q psy13674 270 HA---------STTRISLRK-GRGETRIAKIYDSPDMPEA 299 (315)
Q Consensus 270 h~---------~~tRl~L~k-~~g~~R~~~I~KSp~~p~~ 299 (315)
++ ...|.++.+ ..|-.|+..|++..+.|..
T Consensus 253 ~a~~~~v~~~~d~~~~il~~~~~~~~r~~~vl~~~~~~~~ 292 (331)
T 2vhj_A 253 NSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHS 292 (331)
T ss_dssp HCSEEEEECSSTTEEEEEEECBTTCCEEEEEEEEEECGGG
T ss_pred CceeEEEecccCcceEEEEccCCeehhHHHHHHHhhcccE
Confidence 12 234555544 4566888888876565543
No 34
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.93 E-value=9.4e-09 Score=102.99 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=52.4
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+...+++||++.||.+..||++.|+++.|.|++|||||+|+.+++.+-.++ .+.+++||+.+.
T Consensus 16 ~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~------~~~g~i~v~g~~ 78 (525)
T 1tf7_A 16 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE------FDEPGVFVTFEE 78 (525)
T ss_dssp SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH------HCCCEEEEESSS
T ss_pred cccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEEEEeC
Confidence 456789999999999999999999999999999999999999976443332 235688888765
No 35
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=98.85 E-value=1.8e-09 Score=84.16 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhh
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKR 147 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~ 147 (315)
+||++..+++|+++||+|++||+..++.+|++++|+|+.++.++++.+++.+++.+++|.+++++-
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~~~~~~~~ 75 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEEL 75 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCCCCCCCCC
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999987654
No 36
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=98.66 E-value=5.3e-08 Score=73.41 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=51.2
Q ss_pred cchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 75 ~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+|..|+ |+++.++.+|.++||+|++||+.+++++|..++|+|+++|++|+.++++
T Consensus 8 ~l~~L~--Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLE--GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSST--TCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHcC--CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 444555 9999999999999999999999999999999999999999999999987
No 37
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=98.57 E-value=7.9e-08 Score=72.55 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=50.4
Q ss_pred hCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHh
Q psy13674 81 NYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKIC 133 (315)
Q Consensus 81 ~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~ 133 (315)
.+||++.++++|..+||+|+++|.++|+++|+.+.|+++++|++|+..+++.+
T Consensus 11 ~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l 63 (70)
T 1u9l_A 11 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 63 (70)
T ss_dssp HHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999998764
No 38
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00052 Score=64.17 Aligned_cols=117 Identities=20% Similarity=0.167 Sum_probs=72.7
Q ss_pred HHHHHhCCCCchHHHhcC--CHHHHHHHhCCCHHHHHHHHHHHHhHhcc----ccchHHHHHHhhcCccceecCChhHHH
Q psy13674 89 IKKLKSVGLCTIKGVQMT--TRRKMSQIKGFSEAKVDKIKEACMKICDN----SFLTAAQVVEKRKQVFKITTGSTELDK 162 (315)
Q Consensus 89 i~kL~~aGi~Tv~dll~~--~~~~L~~~~gis~~~v~ki~~~~~~~~~~----~~~tA~ell~~~~~~~~isTG~~~LD~ 162 (315)
+++|...+.-+-+++-.. .-++..-..+++..-+.++++.+.+.+.. ...+..+ ..+.++.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~ 82 (297)
T 1j8m_F 11 VRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERRE--------WFIKIVYDELSN 82 (297)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHH--------HHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHH--------HHHHHHHHHHHH
Confidence 445554444444332111 11223344688888888888877654311 1112222 123455667888
Q ss_pred hhcCCCCc-------ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 163 ILGGGIES-------MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 163 lL~GGl~~-------g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+++++... +.++-+.|++|+|||+++..+|..... .+++++++|.. .+++.
T Consensus 83 ~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~-------~g~~v~l~~~D-~~r~~ 140 (297)
T 1j8m_F 83 LFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKK-------KGFKVGLVGAD-VYRPA 140 (297)
T ss_dssp HTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHH-------TTCCEEEEECC-CSSSH
T ss_pred HhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEecC-CCCHH
Confidence 88765322 789999999999999999999987642 46789999987 35543
No 39
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=97.46 E-value=0.00015 Score=55.83 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=52.0
Q ss_pred ccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 70 EEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 70 ~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
.-...||+.|. |+++....|+++||+|+.||+..+..+|.++.++-...++.|.+.+.+
T Consensus 12 ~~l~~~Ie~L~---LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 12 KVLEMTIEELD---LSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp CGGGCBGGGSC---CBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHhC---CCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 34567888775 999999999999999999999999999999999999988888776653
No 40
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=97.46 E-value=0.00021 Score=54.10 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=50.4
Q ss_pred cccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 73 FQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 73 ~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
..||+.|. |+++....|+++||+|+.||+..+..+|.++.|+-...+++|.+.+.+
T Consensus 8 ~~~Ie~L~---LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 8 EMTIEELD---LSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp TCBGGGSC---CBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHhC---CCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46777775 999999999999999999999999999999999999998888877654
No 41
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=97.45 E-value=0.00029 Score=55.01 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=53.6
Q ss_pred cccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhH
Q psy13674 69 GEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132 (315)
Q Consensus 69 ~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~ 132 (315)
..-...||+.|. |+++....|+++||+|+.||+..+..+|.++.++-...++.|.+.+.+.
T Consensus 7 ~~~l~~~I~~L~---LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 7 DPILLRPVDDLE---LTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp CGGGGSBGGGGC---CCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred hHHHhCcHHHhC---CCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 344567888885 9999999999999999999999999999999999999998888776543
No 42
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.16 E-value=0.00029 Score=61.86 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=29.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++.|.|.+|||||+||.+++.. +.+++||+|+..|+.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----------~~~~~yiaT~~~~d~e 38 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----------APQVLYIATSQILDDE 38 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----------CSSEEEEECCCC----
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----------CCCeEEEecCCCCCHH
Confidence 4789999999999999999742 3479999999888776
No 43
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=97.14 E-value=0.0003 Score=56.23 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=51.4
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
...||+.|. |+++....|+++||+|+.||+..+..+|.++.++-...++.|.+.+.+
T Consensus 22 l~~~Ie~L~---LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 22 LLRPVDDLE---LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHSBGGGGT---CCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hcCcHHHhC---CCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 447788886 999999999999999999999999999999999999998888877654
No 44
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.94 E-value=0.0039 Score=61.50 Aligned_cols=118 Identities=19% Similarity=0.111 Sum_probs=70.0
Q ss_pred HHHHHHhCCCCchHHHhcC--CHHHHHHHhCCCHHHHHHHHHHHHhHhcc----ccchHHHHHHhhcCccceecCChhHH
Q psy13674 88 DIKKLKSVGLCTIKGVQMT--TRRKMSQIKGFSEAKVDKIKEACMKICDN----SFLTAAQVVEKRKQVFKITTGSTELD 161 (315)
Q Consensus 88 ~i~kL~~aGi~Tv~dll~~--~~~~L~~~~gis~~~v~ki~~~~~~~~~~----~~~tA~ell~~~~~~~~isTG~~~LD 161 (315)
.+++|...+..|-+++-.. .-.+..-..+++..-+..+.+.+.+.+.. ...+..+...+. =..+|-
T Consensus 9 ~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~--------v~~eL~ 80 (433)
T 3kl4_A 9 AVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISI--------VYDELS 80 (433)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHH--------HHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHH--------HHHHHH
Confidence 3455666666555544211 11122233478888888887777655421 112222211110 013456
Q ss_pred HhhcCCC-------CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 162 KILGGGI-------ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 162 ~lL~GGl-------~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
++|+++- ..+.++-++|++|+|||+++..+|.... ..+.+|+++++. .|++.
T Consensus 81 ~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~-------~~G~kVllv~~D-~~r~~ 139 (433)
T 3kl4_A 81 KLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYK-------KRGYKVGLVAAD-VYRPA 139 (433)
T ss_dssp HHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHH-------HTTCCEEEEEEC-CSCHH
T ss_pred HhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCeEEEEecC-ccchh
Confidence 6665432 2478999999999999999999997764 246889999887 46665
No 45
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.82 E-value=0.045 Score=54.13 Aligned_cols=43 Identities=33% Similarity=0.152 Sum_probs=35.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+.++-++|++|+|||+++..||.... ..+.+|+.|++. +|++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~-------~~G~kVllv~~D-~~R~a 142 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ-------KRGYKVGVVCSD-TWRPG 142 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-------TTTCCEEEEECC-CSSTH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH-------HCCCeEEEEeCC-Ccchh
Confidence 67999999999999999999998764 246789999976 56665
No 46
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=96.75 E-value=0.00068 Score=65.61 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccceecCChhHHHhhc-CCCCcccEEEEecCCCCChhhHHH
Q psy13674 150 VFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSH 189 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~-GGl~~g~ItEi~G~~GsGKTqLal 189 (315)
...++||+++||++|+ |||+.|.++.|.|+ |||.++.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 4779999999999999 99999999999998 9999984
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.71 E-value=0.007 Score=56.83 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=36.3
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
..+.++-|+|++|+|||+++..+|..... .+++|+++|++ .|++.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-------~g~kV~lv~~D-~~r~~ 146 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD-------EGKSVVLAAAD-TFRAA 146 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEEC-TTCHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh-------cCCEEEEEccc-cccHH
Confidence 46889999999999999999999987541 36789998876 46653
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0018 Score=55.76 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.0
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+....|+|++|+|||+|+..++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466788999999999999999987653
No 49
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.57 E-value=0.0019 Score=54.50 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++..|.++-|.|++|||||+|+..++-. .+.+.+++|..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----------~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----------PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----------SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----------cCCCeEEEccc
Confidence 4778999999999999999999988753 22346777754
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0088 Score=58.91 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
|+++..=+.++||||||||.||..+|..+-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 566666688999999999999999998754
No 51
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.43 E-value=0.015 Score=54.99 Aligned_cols=44 Identities=23% Similarity=0.145 Sum_probs=33.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
..|.++-|.|++|+|||+++..++.... | .++++.+++.. .|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~------~~g~V~l~g~D-~~r~ 170 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-N------HGFSVVIAASD-TFRA 170 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-H------TTCCEEEEEEC-CSST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-h------cCCEEEEEeec-cccc
Confidence 5799999999999999999999987643 1 35566666544 4554
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0061 Score=60.22 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=27.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
|+++..=+.++||||||||.||..+|..+-.|
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 77777778899999999999999999886553
No 53
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0095 Score=58.40 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
|+++..=+.++||||||||.||..+|..+..|
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 55554457899999999999999999876553
No 54
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.31 E-value=0.033 Score=51.92 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
+..|.++-|.|++|+|||+++..+|.... | .++++.+ +....|+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~------~~g~V~l-~g~d~~r~ 141 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-N------EGTKVLM-AAGDTFRA 141 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-H------TTCCEEE-ECCCCSCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-H------cCCeEEE-Eeecccch
Confidence 56799999999999999999999987653 1 2445554 44455654
No 55
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.28 E-value=0.014 Score=55.27 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred cCCHHHHHHHhC----CCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccceecCChhHHHhhcCC-CCcccEEEEecC
Q psy13674 105 MTTRRKMSQIKG----FSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGG-IESMAITEAFGE 179 (315)
Q Consensus 105 ~~~~~~L~~~~g----is~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~isTG~~~LD~lL~GG-l~~g~ItEi~G~ 179 (315)
..+..+|.++.| +|.++|..+.--+++++..-+ .+.+.+.. ....++++. -..--|+-|.|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~-~~~~~l~~------------~~~~~l~~~~~~~p~iigI~Gp 100 (321)
T 3tqc_A 34 TLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYV-TARQTLQQ------------ATYQFLGKPEPKVPYIIGIAGS 100 (321)
T ss_dssp CCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHH-HHHHHHHH------------HHHHHHTCCCCCCCEEEEEECC
T ss_pred CCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhh-cchHHHHH------------HHHHHhccCCCCCCEEEEEECC
Confidence 345566666666 455788888777766553221 12222211 122344331 122348999999
Q ss_pred CCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 180 ~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
+|||||+||..++..... . ..++.+.+|+..+-+.+
T Consensus 101 sGSGKSTl~~~L~~ll~~----~-~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLSR----W-PDHPNVEVITTDGFLYS 136 (321)
T ss_dssp TTSSHHHHHHHHHHHHTT----S-TTCCCEEEEEGGGGBCC
T ss_pred CCCCHHHHHHHHHHHhcc----c-CCCCeEEEEeecccccc
Confidence 999999999888664321 0 13467888887764443
No 56
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.26 E-value=0.023 Score=53.52 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=36.4
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
...+.++-++|++|+|||+++..+|.... ..+++|+++|.. .|++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-------~~g~kVllid~D-~~r~ 146 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA-------ELGYKVLIAAAD-TFRA 146 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH-------HTTCCEEEEECC-CSCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-------HCCCeEEEEeCC-Ccch
Confidence 35688999999999999999999988654 146889999876 4554
No 57
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.22 E-value=0.02 Score=53.16 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=35.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.|.++-++|++|+|||+++..+|..... ..+.+|+++|... |++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~------~~G~~V~lv~~D~-~r~~ 148 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML------EKHKKIAFITTDT-YRIA 148 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCCEEEEECCC-SSTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------hcCCEEEEEecCc-ccch
Confidence 5789999999999999999999876541 1345899999763 5543
No 58
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.22 E-value=0.034 Score=53.37 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=53.8
Q ss_pred HHhCCCHHHHHHHHHHHHhHhcc-ccchH---HHHHHhhcCccceecCChhHHHhhcC---------CCCcccEEEEecC
Q psy13674 113 QIKGFSEAKVDKIKEACMKICDN-SFLTA---AQVVEKRKQVFKITTGSTELDKILGG---------GIESMAITEAFGE 179 (315)
Q Consensus 113 ~~~gis~~~v~ki~~~~~~~~~~-~~~tA---~ell~~~~~~~~isTG~~~LD~lL~G---------Gl~~g~ItEi~G~ 179 (315)
-..+++..-+.++++.+.+.+.. ...++ ...+.+ .|-++|++ -+..|.++-|.|+
T Consensus 98 l~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~ 165 (359)
T 2og2_A 98 LVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKE------------SVLEMLAKKNSKTELQLGFRKPAVIMIVGV 165 (359)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHH------------HHHHHHCCC---CSCCCCSSSSEEEEEECC
T ss_pred HHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------HHHHHhCCcccCCCcceecCCCeEEEEEcC
Confidence 34588888888888888765422 11122 222221 12222221 2467999999999
Q ss_pred CCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 180 FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 180 ~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
+|+|||+++..+|.... | .++++.+ +....|++
T Consensus 166 nGsGKTTll~~Lag~l~-~------~~G~V~l-~g~D~~r~ 198 (359)
T 2og2_A 166 NGGGKTTSLGKLAHRLK-N------EGTKVLM-AAGDTFRA 198 (359)
T ss_dssp TTSCHHHHHHHHHHHHH-H------TTCCEEE-ECCCCSCH
T ss_pred CCChHHHHHHHHHhhcc-c------cCCEEEE-eccccccc
Confidence 99999999999987653 1 2445544 44445654
No 59
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.0087 Score=55.89 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.3
Q ss_pred hcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 164 LGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 164 L~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.|+..+..-..|+||||+|||.||..+|..+
T Consensus 38 ~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 38 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 33556666778899999999999999998765
No 60
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.07 E-value=0.0041 Score=55.96 Aligned_cols=38 Identities=18% Similarity=0.025 Sum_probs=31.6
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
..|.++.++|++|+|||+++++++.++. +.+.+|+|+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-------~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-------YADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-------HTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-------hcCCEEEEEE
Confidence 4588999999999999999999998875 2466788874
No 61
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.04 E-value=0.0044 Score=53.51 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=29.7
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
.|.|.-++|++|+|||+++++++.+... .+.+++|+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-------~g~~v~~~~ 38 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-------GKKKVAVFK 38 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEe
Confidence 4789999999999999999999987642 345677663
No 62
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.00 E-value=0.0074 Score=56.51 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=31.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
.|.++-|.|++|||||+++..++.... | .++++.+.+. ..|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~------~~g~V~l~g~-D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-N------LGKKVMFCAG-DTFRA 143 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-T------TTCCEEEECC-CCSST
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h------cCCEEEEEee-cCCCh
Confidence 588999999999999999999987653 1 2455555544 44543
No 63
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.98 E-value=0.015 Score=48.64 Aligned_cols=41 Identities=17% Similarity=-0.027 Sum_probs=27.7
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
+.|+|++|+|||+++..++....-+ +.....++++......
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGE-----NWRDNFIEMNASDERG 81 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG-----GGGGGEEEEETTCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc-----ccccceEEeccccccC
Confidence 7899999999999999998764211 1233455666544333
No 64
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.94 E-value=0.049 Score=54.79 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=52.9
Q ss_pred HhCCCHHHHHHHHHHHHhHhcc----ccchHHHHHHhhcCccceecCChhHHHhhcC-------CCCcccEEEEecCCCC
Q psy13674 114 IKGFSEAKVDKIKEACMKICDN----SFLTAAQVVEKRKQVFKITTGSTELDKILGG-------GIESMAITEAFGEFRT 182 (315)
Q Consensus 114 ~~gis~~~v~ki~~~~~~~~~~----~~~tA~ell~~~~~~~~isTG~~~LD~lL~G-------Gl~~g~ItEi~G~~Gs 182 (315)
..+++..-+.+|++.+.+.+.. .......++.. .|-++|++ -+..|.++-|.|++|+
T Consensus 237 ~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~------------~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGS 304 (503)
T 2yhs_A 237 IADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKE------------EMGEILAKVDEPLNVEGKAPFVILMVGVNGV 304 (503)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHH------------HHHHHHHTTBCCCCCCSCTTEEEEEECCTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH------------HHHHHhCCCCCCceeeccCCeEEEEECCCcc
Confidence 3578888888888877654421 11112222221 22233321 2567999999999999
Q ss_pred ChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 183 GKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 183 GKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
|||+|+..|+.... | .++++++.+. ..|+.
T Consensus 305 GKTTLl~~LAgll~-~------~~G~V~l~g~-D~~r~ 334 (503)
T 2yhs_A 305 GKTTTIGKLARQFE-Q------QGKSVMLAAG-DTFRA 334 (503)
T ss_dssp SHHHHHHHHHHHHH-H------TTCCEEEECC-CTTCH
T ss_pred cHHHHHHHHHHHhh-h------cCCeEEEecC-cccch
Confidence 99999999986543 1 2455555443 45654
No 65
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.0043 Score=52.64 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|...|.++-|+||+|+|||+|+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44678999999999999999999987653
No 66
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.92 E-value=0.032 Score=51.72 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCCchHHHhcCCHHHHHHHhCC--CHHHHHHHHHHHHhHhccccchHHHHHHhh-----------------
Q psy13674 87 ADIKKLKSVGLCTIKGVQMTTRRKMSQIKGF--SEAKVDKIKEACMKICDNSFLTAAQVVEKR----------------- 147 (315)
Q Consensus 87 ~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gi--s~~~v~ki~~~~~~~~~~~~~tA~ell~~~----------------- 147 (315)
..++.|-++||.|-.+++..++..-...+.- ....|...+..++.... ..+|+.+.+..+
T Consensus 3 ~mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m~r~~~~-~~~s~~~~i~~~~~~~~~~~n~i~~~l~~ 81 (267)
T 1u0j_A 3 ELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMS-LTKTAPDYLVGQQPVEDISSNRIYKILEL 81 (267)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HHCCHHHHHSCSSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHHHHHHHH-ccCCHHHHhcccCCCCCCchHHHHHHHHH
Confidence 4577888999999999997776644443321 22334444444443321 223444443322
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+...++. -..-|...|.|..+...-..|+||||+|||.||..+|..+
T Consensus 82 qg~~~~~-~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 82 NGYDPQY-AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCHHH-HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCHHH-HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 1111111 1122556666655766779999999999999999998754
No 67
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.90 E-value=0.0093 Score=55.02 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.+.++.|+|+||||||++|..++... ....++||+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~----------~~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET----------QGNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT----------TTCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEech
Confidence 46799999999999999999997652 2346778753
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.86 E-value=0.025 Score=52.41 Aligned_cols=50 Identities=20% Similarity=0.049 Sum_probs=35.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCC-CCeEEEEeCCCCCChhhHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT-GGKVIYVDSENTLYPLLNIIAIAS 229 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~-~~~vvyIDtE~~F~~~~Rl~~iae 229 (315)
.+-|+|++|+|||+|+..++....- . +..++|+++.....+..-+..+++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD-------KTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-------SCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh-------hcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 7889999999999999998876531 2 568999997655544412334444
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.01 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+..+.-..|+||||+|||+|+..+|...
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56666778999999999999999998764
No 70
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.83 E-value=0.0046 Score=51.97 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=31.3
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
++.|.++-|+|++|+|||+|+..++.... | ..+..++|++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-----~~g~~~~~~~~~ 76 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY-E-----KKGIRGYFFDTK 76 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH-H-----HSCCCCCEEEHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH-H-----HcCCeEEEEEHH
Confidence 45588999999999999999999887653 1 124467777644
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.81 E-value=0.011 Score=49.19 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=30.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.|.++-|+|++|+|||+|+..++....- .+.+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHH
Confidence 7889999999999999999988876531 133467776553
No 72
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.78 E-value=0.0057 Score=51.36 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=24.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|...+.++-|.|+||||||+++..|+..
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567789999999999999999999865
No 73
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.70 E-value=0.0051 Score=55.40 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=34.0
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..++.. +..|-.++. |+|...-+.|+||||+|||++|+.+|..+
T Consensus 39 ~~~~~f-~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 39 IEFITF-LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CCHHHH-HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCHHHH-HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444 566777775 58877779999999999999999998764
No 74
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.67 E-value=0.0071 Score=55.64 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.++..+.|+||||+|||.||..++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 67888889999999999999999998764
No 75
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.61 E-value=0.0083 Score=51.12 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=29.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+-|+|++|+|||+|+..++..... .+..++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~-------~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK-------RNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT-------TTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEhH
Confidence 46779999999999999998876541 35678888764
No 76
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.0095 Score=50.27 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=31.8
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|.++-|.|.+|||||+++..++.... ..++.+.++|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~-------~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ-------KEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH-------HTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH-------hcCCeEEEeeHH
Confidence 4678999999999999999999987643 235668888753
No 77
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.007 Score=51.35 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=23.4
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++.|.++-|.|++|||||+++..++-.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999988764
No 78
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.54 E-value=0.016 Score=56.92 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=35.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCC-CCeEEEEeCCCCCChh
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT-GGKVIYVDSENTLYPL 221 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~-~~~vvyIDtE~~F~~~ 221 (315)
..++-++|.+|+|||+++..||..... . +.+|+.||+. .|++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~-------~~G~kVllvd~D-~~r~~ 143 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE-------KHKKKVLVVSAD-VYRPA 143 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH-------TSCCCEEEEECC-CSSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-------hcCCeEEEEecC-CCCcc
Confidence 457888899999999999999987652 4 7899999988 45554
No 79
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.50 E-value=0.011 Score=50.83 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.8
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|.++-|.|++|||||+++..++..... .+..++|+|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~-------~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ-------KGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCceEEEecCc
Confidence 56899999999999999999999875421 23345788864
No 80
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.44 E-value=0.0084 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.2
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..|.++-|.|++|||||+|+..++-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999988765
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.44 E-value=0.022 Score=56.06 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=37.3
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...+.||.+.||.++ -+..|.++-|+|++|+|||+|...++-..
T Consensus 138 ~~~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 138 EHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CSBCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355677999999995 68899999999999999999977776654
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.43 E-value=0.01 Score=52.25 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
|+....-..|+||||+|||+++..++....
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 445555578999999999999999987653
No 83
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0084 Score=59.19 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
|+++..=+.++||||||||.||..+|..+..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 6666666789999999999999999987654
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.41 E-value=0.0059 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=21.0
Q ss_pred CCcccEEEEecCCCCChhhHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHT 190 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalq 190 (315)
++.|.++-|.|++|||||+|+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 46799999999999999999994
No 85
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.39 E-value=0.01 Score=55.15 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=27.9
Q ss_pred hhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 163 ILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 163 lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.+..|..++....|+||||+|||.||..++....
T Consensus 62 ~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 62 MIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3345666688899999999999999999987753
No 86
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.38 E-value=0.0094 Score=58.63 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=38.7
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+.||++.+|-++ -+..|.-.-|+|++|+|||+|+..++..+
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 57899999999997 67789999999999999999999987754
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.37 E-value=0.011 Score=54.47 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.......|+||||+|||.||..+|...
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55555678899999999999999998765
No 88
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.37 E-value=0.12 Score=50.69 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=36.1
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.+.++-++|++|+|||+++..+|..... .+++|+++|+. .+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~-------~g~~Vllvd~D-~~r~a 140 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-------KGRRPLLVAAD-TQRPA 140 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEECC-SSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEeecc-ccCch
Confidence 5788999999999999999999987642 46889999985 56664
No 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.36 E-value=0.016 Score=53.67 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++..+..-..|+||||+|||.||..+|....
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4445556688999999999999999987643
No 90
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.36 E-value=0.0089 Score=51.70 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=23.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-++.|.++-|.||+|||||+|+..++--.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999887543
No 91
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.35 E-value=0.022 Score=54.30 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=37.5
Q ss_pred ccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 150 VFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 150 ~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...+.||...||.++ -+..|.++-|.|++|+|||+|...++-..
T Consensus 52 ~~~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 52 DQPFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CSEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355778999999996 68899999999999999999977776654
No 92
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.036 Score=51.03 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=34.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.+..+-|+|+||+|||+|+..++....-... ..+.+..++|+++.....+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHH
Confidence 3457789999999999999999876521000 00236788999987544443
No 93
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.016 Score=52.22 Aligned_cols=43 Identities=16% Similarity=-0.031 Sum_probs=29.7
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+.|+|++|+|||+++..++....-+ .....+++++.......+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~ 87 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR-----SYADGVLELNASDDRGID 87 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG-----GHHHHEEEECTTSCCSHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC-----cccCCEEEecCccccChH
Confidence 8899999999999999998764311 123457777765433333
No 94
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.29 E-value=0.013 Score=58.62 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=40.2
Q ss_pred hcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
......+.||++.+|.+. -+-.|...-|+|++|+|||+|+..++.+..
T Consensus 129 ~~~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 129 ATEVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CCSCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cccCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 345678999999999996 455678899999999999999998877653
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.032 Score=52.76 Aligned_cols=70 Identities=10% Similarity=-0.148 Sum_probs=42.2
Q ss_pred HHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH
Q psy13674 160 LDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV 231 (315)
Q Consensus 160 LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~ 231 (315)
|...+.+| .+...-|+|+||+|||.++..++....-.....+.....++||++....++..-+..+++.+
T Consensus 36 L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L 105 (318)
T 3te6_A 36 IYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI 105 (318)
T ss_dssp HHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHH
T ss_pred HHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHh
Confidence 44455555 34456899999999999999998775321110011245789999876555541344555543
No 96
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.12 E-value=0.029 Score=56.35 Aligned_cols=56 Identities=21% Similarity=0.167 Sum_probs=39.3
Q ss_pred hhHHHhhcC---CCC----cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 158 TELDKILGG---GIE----SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 158 ~~LD~lL~G---Gl~----~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.+|.++|++ ++. ...++-|+|.+|+|||+++..|+.... ..+.+++.||.. .|++.
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~-------~~G~kVllVd~D-~~r~a 143 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQ-------RKGWKTCLICAD-TFRAG 143 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHH-------HTTCCEEEEEEC-CSSSH
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHH-------hCCCeEEEEecc-ccchh
Confidence 346677765 332 245788999999999999999997754 136788888875 35543
No 97
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.11 E-value=0.025 Score=54.67 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|||||+|..-++-
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 478899999999999999999876653
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.10 E-value=0.012 Score=50.51 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..|.++-|.|++|||||+++..++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999998654
No 99
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.05 E-value=0.072 Score=53.54 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=39.7
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
+..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+..
T Consensus 139 R~~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 139 RKSVHEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp BCCCCSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ccCCCCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3344678999999999997 566777888999999999999986666543
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.04 E-value=0.013 Score=50.61 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...|.++-|.|++|||||+|+..++-..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999887654
No 101
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.00 E-value=0.051 Score=50.85 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
+..|.++-|.|++|||||+|+..++--.. |. + ...++.||..+..+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~---~-G~~~v~~v~qd~~~~~~ 135 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RW---D-HHPRVDLVTTDGFLYPN 135 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TS---T-TCCCEEEEEGGGGBCCH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-cc---C-CCCeEEEEecCccCCcc
Confidence 67899999999999999999998876432 21 1 12467888877655443
No 102
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.97 E-value=0.02 Score=52.58 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=30.6
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.+....|+||||+|||+|+..++....- .+..++|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK-------RGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH-------TTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEHH
Confidence 4556789999999999999999876531 25678999865
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.93 E-value=0.018 Score=47.72 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.++-|.|+||||||+++..|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999999998764
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.93 E-value=0.027 Score=48.49 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...|.++-|.|++|||||+|+..++.... ..++.+++++...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-------~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-------EQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-------HTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-------hcCCeEEEeccCc
Confidence 45688999999999999999998876532 1356677776553
No 105
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.92 E-value=0.012 Score=51.68 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.||+|+|||+|+..++-.
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999999988764
No 106
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.91 E-value=0.016 Score=56.96 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred HhCCCHHHHHHHHHHHHhHhcc-----ccchHHHHHHhhcCccceecCChhHHHhhcCC---C--Ccc--cEEEEecCCC
Q psy13674 114 IKGFSEAKVDKIKEACMKICDN-----SFLTAAQVVEKRKQVFKITTGSTELDKILGGG---I--ESM--AITEAFGEFR 181 (315)
Q Consensus 114 ~~gis~~~v~ki~~~~~~~~~~-----~~~tA~ell~~~~~~~~isTG~~~LD~lL~GG---l--~~g--~ItEi~G~~G 181 (315)
..+++...+.++.+.+.+...+ ++.....+... =...|.++++++ + ..+ .++-|+|++|
T Consensus 39 ~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~G 109 (432)
T 2v3c_C 39 QADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKI---------VYEELVKLLGEEAKKLELNPKKQNVILLVGIQG 109 (432)
T ss_dssp HTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHH---------HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSS
T ss_pred HcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHH---------HHHHHHHHhCCCCcCccccCCCCeEEEEECCCC
Confidence 3577788888887777654421 11111111100 012466667654 3 213 5888999999
Q ss_pred CChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 182 TGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 182 sGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+|||+++..+|..... .+.+|+++|+.
T Consensus 110 vGKTTla~~La~~l~~-------~G~kVllv~~D 136 (432)
T 2v3c_C 110 SGKTTTAAKLARYIQK-------RGLKPALIAAD 136 (432)
T ss_dssp SSTTHHHHHHHHHHHH-------HHCCEEEECCS
T ss_pred CCHHHHHHHHHHHHHH-------cCCeEEEEecc
Confidence 9999999999987641 35788998876
No 107
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.91 E-value=0.019 Score=46.96 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=28.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
....|+|++|+|||+|+..++....-........+..++|++..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 34579999999999999999876531000000125667777654
No 108
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.91 E-value=0.033 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++.-+.|+||||+|||+|+..++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45667899999999999999998764
No 109
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.89 E-value=0.1 Score=52.61 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=39.1
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+.
T Consensus 139 R~~v~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 139 RQSVDQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CCCCCCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCCcCcccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 3345678999999999998 46667778899999999999998776653
No 110
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.88 E-value=0.02 Score=47.59 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=27.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
++-|.|+||||||++|..|+.... ..+..+.|+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~-------~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD-------NQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-------TTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-------hcCceEEEEEC
Confidence 678999999999999999987642 23456778863
No 111
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.88 E-value=0.015 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.4
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.|.++-|.||+|+|||+|+..|+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999999765
No 112
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.87 E-value=0.065 Score=53.98 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=38.1
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+.
T Consensus 141 ~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 141 SVREPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp CCCSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 34577999999999998 56677888899999999999988665554
No 113
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.9
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~ 193 (315)
.++-|+|+||||||++|..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4678999999999999999986
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.86 E-value=0.024 Score=46.19 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=29.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHcc---CCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQ---LPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~---lp~~~~gg~~~~vvyIDtE 215 (315)
+....|+|++|+|||+|+..++.... .|.. ..+..++|++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 87 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG---LKGRRVLALDMG 87 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG---GTTCEEEEECHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchh---hcCCcEEEeeHH
Confidence 34568999999999999999877642 1111 125677888754
No 115
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.015 Score=49.82 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.6
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..|.++-|.|++|||||+|+..++... +.+|||+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~------------g~~~i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET------------GLEFAEADA 62 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH------------CCEEEEGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh------------CCeEEcccc
Confidence 468899999999999999999887542 357788664
No 116
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.80 E-value=0.021 Score=51.70 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=28.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.+.-..|+||||+|||.++..++..+.... ......+++++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 345688999999999999998876652110 0123456666654
No 117
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.78 E-value=0.084 Score=55.91 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
|+.+-.=+.++||||||||.||..+|..+-
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 666555678999999999999999987543
No 118
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.77 E-value=0.017 Score=48.45 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=28.9
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
..|.++-|.|++|||||+++..|+.... ..+..++++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-------~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-------CHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-------HTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-------hCCCcEEEECC
Confidence 5788999999999999999999876531 02335677774
No 119
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.76 E-value=0.016 Score=51.91 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999999886653
No 120
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.75 E-value=0.085 Score=52.52 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=40.7
Q ss_pred hhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 146 ~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
+..-...+.||++.+|.++ -+-.|.=.-|+|.+|+|||.|+.+++..+..
T Consensus 124 R~~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 124 RRKPEQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp BCCCCCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred ccCccccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 3344578999999999998 4555666778999999999999999887654
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.75 E-value=0.018 Score=47.89 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=22.5
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..|.++-|.|++|||||+++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999999988753
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.74 E-value=0.017 Score=48.16 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=22.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|.++-|.|+||||||++|..|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999998753
No 123
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.73 E-value=0.023 Score=51.29 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=30.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...+.|+||||+|||+++..++.... ..++.+++++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~-------~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF-------DTEEAMIRIDMTE 85 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH-------SCGGGEEEEEGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc-------CCCcceEEeeccc
Confidence 45788999999999999999987653 2356688888653
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.70 E-value=0.016 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~ 193 (315)
|.++-|.|++|+|||+|+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999974
No 125
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.68 E-value=0.028 Score=54.88 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+..+..-+.|+||||+|||.||..+|..+
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 444555667899999999999999998765
No 126
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.64 E-value=0.03 Score=51.32 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=28.0
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+.|+||||+|||+++..++.....|. .....+++++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASD 99 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEcccc
Confidence 78999999999999999987653221 1234577777554
No 127
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.02 Score=56.63 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
.|+++..=+.++||||||||.||..+|..+..
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 36776666889999999999999999987654
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.57 E-value=0.017 Score=47.75 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.++-|.|++|||||+++..++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999998764
No 129
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.56 E-value=0.021 Score=49.01 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+..|.++-|.|++|||||+++..++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999988753
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.54 E-value=0.023 Score=48.10 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-++.|.++-|.|+.|+|||+|...++-..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46889999999999999999999887754
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.029 Score=52.00 Aligned_cols=45 Identities=20% Similarity=0.081 Sum_probs=30.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCC-CCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT-GGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~-~~~vvyIDtE~ 216 (315)
....|+|++|+|||+|+..++....-......+. +..++|+++..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 4788999999999999999987642100000012 67889998653
No 132
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.51 E-value=0.023 Score=53.75 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
++..+..-+.|+||||+|||.||..+|.....
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44455555788999999999999999876543
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.02 Score=57.08 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=26.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp 198 (315)
|+++-.=+.++||||||||.||..+|..+..|
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 66666667899999999999999999876543
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.50 E-value=0.019 Score=49.35 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=24.2
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...|.++-|+|+||||||+|+..|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467899999999999999999998754
No 135
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.50 E-value=0.032 Score=49.63 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-..|+|++|+|||.+|..++.... ..+...++|++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~-------~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS-------RWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST-------TTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC-------ccCCCeEEEecCC
Confidence 3467899999999999998886532 2356789998764
No 136
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.50 E-value=0.015 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=18.9
Q ss_pred CCcccEEEEecCCCCChhhHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla 192 (315)
++.|.++-|.|++|||||+|+..++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999999887
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.49 E-value=0.022 Score=51.03 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=28.5
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+.++-|.|+||||||+++..++... +..++++|.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l----------~~~~~~~~~D 66 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF----------QGNIVIIDGD 66 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT----------TTCCEEECGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc----------CCCcEEEecH
Confidence 346789999999999999999998653 1245677765
No 138
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.46 E-value=0.02 Score=46.44 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.2
Q ss_pred cEEEEecCCCCChhhHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTL 191 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalql 191 (315)
.++-|+|+||||||++|..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999998
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.43 E-value=0.021 Score=47.73 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.|.++-|.|++|||||++|..|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999864
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.42 E-value=0.025 Score=46.30 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|++|||||++|..|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998653
No 141
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.42 E-value=0.022 Score=50.64 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-.+.|.++-|.||+|+|||+|+..++-..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999999887653
No 142
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.39 E-value=0.027 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+.|+|+||+|||+|+..++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 143
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.38 E-value=0.02 Score=51.70 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|||||+|..-++-
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999887754
No 144
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.38 E-value=0.023 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=25.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++.|.++-|+|++|+|||+|+.-++--
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 7999999999999999999999988743
No 145
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.35 E-value=0.02 Score=52.82 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|...++-
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 467899999999999999999987754
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.33 E-value=0.033 Score=51.63 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=35.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChh
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~ 221 (315)
.|.++-++|++|+|||+++..+|..... .+++++++|.. .+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-------~~~~v~l~~~d-~~~~~ 140 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-------KGRRPLLVAAD-TQRPA 140 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-------TTCCEEEEECC-SSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEecCC-cccHh
Confidence 6789999999999999999999987541 46889999976 34443
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.33 E-value=0.06 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.2
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
..|+|+||+|||.||..++....
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 68999999999999999987643
No 148
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.32 E-value=0.055 Score=54.16 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=40.3
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
....+.||++.+|-++ -+-.|.=.-|+|++|+|||.|+.+++.+..
T Consensus 133 ~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp CCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 4578999999999997 566788889999999999999999998753
No 149
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.28 E-value=0.052 Score=54.52 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=40.2
Q ss_pred CccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 149 ~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
....+.||++.+|-++ -+-.|.=.-|+|++|+|||.|+..++.+..
T Consensus 145 ~~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 145 KLSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp CCCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred cccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence 4578999999999998 566777888999999999999999999853
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.25 E-value=0.022 Score=52.01 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
++.| +.|+||||||||+|+..+|-... ...++|+...
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~----------~~~i~i~g~~ 79 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESG----------LNFISVKGPE 79 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTT----------CEEEEEETTT
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcC----------CCEEEEEcHH
Confidence 3445 88999999999999999887532 2466776543
No 151
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=94.24 E-value=0.008 Score=55.02 Aligned_cols=64 Identities=14% Similarity=0.322 Sum_probs=0.0
Q ss_pred ccccccccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 66 EEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 66 ~~~~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+.|+......+..+ +||.+....+|-++||.|+++|...++.+|++..||+...+++|+..+..
T Consensus 7 ~~~~~a~~~~L~~I--pGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 7 DVEAEEEYTELTDI--SGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhhcccchhHHhcC--CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33333333344444 59999999999888999999999999999999999999999999877643
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.23 E-value=0.025 Score=48.47 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
..|.++-|.|++|||||+|+..++-... ..+.|++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG----------ERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG----------GGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC----------CCeEEEecCcc
Confidence 4678999999999999999998876421 14677776643
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.22 E-value=0.021 Score=49.32 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=20.9
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.|.++-|.||+|+|||+|+..++-.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999988764
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.22 E-value=0.024 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.6
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++.| +.|+||||+|||+|+..++...
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 4455 7899999999999999888653
No 155
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.21 E-value=0.017 Score=51.27 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
-++.|.++-|.|++|||||+|..-++
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999988765
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.21 E-value=0.034 Score=50.68 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=28.5
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.|+.+. +++|.++-|+||+|||||+|...++-.
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 4566664 889999999999999999998887654
No 157
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.19 E-value=0.023 Score=51.47 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999987754
No 158
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.17 E-value=0.017 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEecCCCCChhhHHHHHHHHccC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~l 197 (315)
..|+||||+|||.||..++.....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 568999999999999999886543
No 159
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.16 E-value=0.026 Score=51.73 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999999887754
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.15 E-value=0.036 Score=45.26 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-..|+|+||+|||.+|..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999887643
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.15 E-value=0.03 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++.|+|++|+|||+|+..++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999997654
No 162
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.14 E-value=0.052 Score=52.96 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|..++.-..++||||+|||.+|..+|...
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 44444557899999999999999998875
No 163
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.14 E-value=0.039 Score=55.62 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=39.8
Q ss_pred HhhcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 145 EKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 145 ~~~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++..-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+.
T Consensus 151 ~R~~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 151 YRKPVDTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp GBCCCCSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred cccCCCcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 33344578999999999998 56667888999999999999998766654
No 164
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.12 E-value=0.028 Score=47.54 Aligned_cols=26 Identities=15% Similarity=-0.023 Sum_probs=22.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++-|.|+||||||++|..|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999998764
No 165
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.10 E-value=0.029 Score=49.83 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=32.2
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
-++.|.++-|.|++|||||+|+..++-..-.+. .......+.|++...
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~--~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNE--VEQRQRKVVILSQDR 68 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG--SCGGGCSEEEEEGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhc--ccccCCceEEEeCCc
Confidence 467789999999999999999998875421000 001234677888874
No 166
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.09 E-value=0.022 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|||||+|..-++-
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999999987754
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.09 E-value=0.051 Score=49.28 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=28.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.++-|+|++|+|||.|+.+++.... ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchh
Confidence 5899999999999999999987642 2479999764
No 168
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.08 E-value=0.025 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999999887754
No 169
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.08 E-value=0.027 Score=51.52 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 478899999999999999999887753
No 170
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.06 E-value=0.028 Score=50.08 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCC--CCCeEEEEeCCCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY--TGGKVIYVDSENTL 218 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg--~~~~vvyIDtE~~F 218 (315)
-++.|.++-|.|++|+|||+|..-++--. -|.. |. ..+++-|+.-+..+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~--G~i~~~g~i~~v~q~~~~ 80 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE--GKIKHSGRISFCSQFSWI 80 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSE--EEEEECSCEEEECSSCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCc--cEEEECCEEEEEecCCcc
Confidence 46789999999999999999988765432 2211 11 12356677665443
No 171
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.06 E-value=0.048 Score=50.46 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHcc-CCccccCCCCCeEEEEeCCCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQ-LPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~-lp~~~~gg~~~~vvyIDtE~~ 217 (315)
...|.++-|.|++|||||+|+..++-... .| ..+.+.+|+..+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~------~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP------EHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST------TCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC------CCCeEEEEecCCc
Confidence 36788999999999999999998876432 12 3567778877753
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.05 E-value=0.029 Score=46.71 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.++-|.|+||||||++|..|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999865
No 173
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.00 E-value=0.04 Score=49.39 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=25.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-..|+||||+|||+++..++... +..+++++..
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~ 84 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEAT 84 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcch
Confidence 45699999999999999998754 2357777755
No 174
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.99 E-value=0.085 Score=49.22 Aligned_cols=60 Identities=18% Similarity=0.037 Sum_probs=36.6
Q ss_pred cccEEEE--ecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEA--FGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASL 230 (315)
Q Consensus 170 ~g~ItEi--~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer 230 (315)
.+....| +|++|+|||+|+..++....-... ..+.+..++|+++.....+..-+.++++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPNLYTILSLIVRQ 110 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778 999999999999998866421000 00124678999975444444123344443
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.99 E-value=0.045 Score=48.98 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.....-..|+||||+|||.||..++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455567899999999999999998763
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.97 E-value=0.032 Score=53.89 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+++.|.++-|+|++|+|||+|+..++-.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999999988853
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.96 E-value=0.034 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=18.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|.||||||++|..|+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35688999999999999999998653
No 178
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.94 E-value=0.031 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999999887754
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.93 E-value=0.03 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=31.0
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.+..+-|+|++|+|||+|+..++....- . . +.+..++|+++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~--~-~-~~~~~~~~i~~~ 85 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHK--K-F-LGKFKHVYINTR 85 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHH--H-T-CSSCEEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--H-h-cCCceEEEEECC
Confidence 4567889999999999999998876431 0 0 015678999864
No 180
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.91 E-value=0.053 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|+.+.|+||+|||.+|..++...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998876554
No 181
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.90 E-value=0.025 Score=51.56 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|||||+|..-++-
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 477899999999999999999987754
No 182
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.89 E-value=0.027 Score=50.78 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999987765
No 183
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.89 E-value=0.037 Score=46.82 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.+.++-|+|++|||||+++..|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999999875
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.87 E-value=0.094 Score=52.02 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.5
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+......|+||||+|||++|..+|... +..++++++..
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l----------~~~~i~in~s~ 112 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDILEQNASD 112 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEECTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeCCC
Confidence 345678999999999999999998753 45678888764
No 185
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.87 E-value=0.034 Score=46.49 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.++-|.|++|||||+++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999998753
No 186
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.87 E-value=0.03 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478899999999999999999987765
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.85 E-value=0.034 Score=58.87 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=53.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccCCcc----------ccC--------------CCCCeEEEEeCCCCCChh
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDE----------TRG--------------YTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~----------~~g--------------g~~~~vvyIDtE~~F~~~ 221 (315)
.|+.+..=..++||||||||.+|..+|..+..|.- |.| .....++|||--..+-+.
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~ 585 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhc
Confidence 46666666789999999999999999988765411 111 123468888866666665
Q ss_pred hHHHHHHHH----HHHHHHHHHHHHHHhhcc-cEEEE
Q psy13674 222 LNIIAIASL----VTLVGSRLPMSFHITRED-LIVFF 253 (315)
Q Consensus 222 ~Rl~~iaer----~~lL~~~~~~L~~LA~e~-iaVV~ 253 (315)
|=...... -.++++++..|..+.... |.||.
T Consensus 586 -R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 586 -RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp -------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred -cCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 53221111 123788888888776666 77773
No 188
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.83 E-value=0.024 Score=50.87 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999887754
No 189
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.83 E-value=0.046 Score=47.78 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=29.7
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEE
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYV 212 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyI 212 (315)
..|.|.-++|+.|+|||+.+++++.++. +.+.+|+++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-------~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-------IAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-------HTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCEEEEE
Confidence 3478999999999999999999999875 244556555
No 190
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.82 E-value=0.035 Score=46.51 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.6
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|++|||||++|..|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 191
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.82 E-value=0.029 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.084 Sum_probs=21.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|.++-|.||+|+|||+|+..++-..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999887653
No 192
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.81 E-value=0.049 Score=54.30 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=39.9
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
.-...+.||++.+|.++ -+-.|.=.-|+|.+|+|||.|..++|..+..
T Consensus 131 ~~~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 131 PPKDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCCSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999998 4555666678899999999999999998765
No 193
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.81 E-value=0.026 Score=50.63 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999999887754
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.80 E-value=0.046 Score=50.83 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
+.-.-|+|++|+|||.|+..++..+.. ..+..++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~------~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE------KKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH------HSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH------hcCCcEEEEEH
Confidence 466789999999999999988876530 13456777764
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.75 E-value=0.039 Score=47.62 Aligned_cols=41 Identities=15% Similarity=-0.018 Sum_probs=30.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
+..|.++-|.|++|||||+++..++.... | ..+..++|+|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~-----~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV-R-----DRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH-H-----HHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc-c-----ccCCcEEEECC
Confidence 45688999999999999999999976531 0 12334788874
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.74 E-value=0.026 Score=55.06 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.-.-|+|+||+|||+|+..++....- ...+..++|++++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~-----~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-----NEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH-----HCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-----hCCCCeEEEeeHH
Confidence 456789999999999999988765421 1135667787765
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.73 E-value=0.054 Score=49.10 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.++.|+|++|+|||+|+.+++... +++|++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~------------~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER------------PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS------------SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc------------CcEEEEeec
Confidence 689999999999999999987542 189998653
No 198
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.73 E-value=0.019 Score=50.61 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..|.++-|.|++|+|||+|..-++--
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999998887654
No 199
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.70 E-value=0.047 Score=49.85 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=33.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.+.++-|+|-.|+|||+++.++|...+. .+.+|+.||...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~-------~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI-------LGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH-------CCCeEEEEeCCC
Confidence 4567777799999999999999988752 477999999884
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.66 E-value=0.11 Score=47.36 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.++.++||||+|||+++..++... +..+++++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~ 82 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGS 82 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEccc
Confidence 578899999999999999998653 3456666654
No 201
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.66 E-value=0.037 Score=46.19 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||+++..++...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45677899999999999999998653
No 202
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.64 E-value=0.085 Score=54.00 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=40.0
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-...+.||++.+|.++ -+-.|.=.-|+|++|+|||.|+++++...
T Consensus 211 ~~~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp CCCSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhcc
Confidence 44578999999999997 56678888999999999999999998764
No 203
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.62 E-value=0.05 Score=46.34 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=22.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||++|..|+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998753
No 204
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.60 E-value=0.03 Score=50.99 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 477899999999999999999887754
No 205
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.59 E-value=0.034 Score=47.46 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..++-|.|++|||||++|..|+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999865
No 206
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.59 E-value=0.11 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
....|+|++|+|||+|+..++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999998754
No 207
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.57 E-value=0.038 Score=46.38 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||++|..|+...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998753
No 208
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.57 E-value=0.031 Score=50.84 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.++-|.|++|+|||+|..-++--
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4788999999999999999998877643
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.57 E-value=0.039 Score=48.59 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=26.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+++-|.|+|||||++.|..||... +..+|+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~------------g~~~istGd 33 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK------------GFVHISTGD 33 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH------------CCEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH------------CCeEEcHHH
Confidence 367789999999999999999764 346777764
No 210
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.55 E-value=0.04 Score=49.55 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|+|++|||||+|+..||...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 367899999999999999998753
No 211
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.55 E-value=0.045 Score=53.87 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=37.4
Q ss_pred cceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 151 FKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 151 ~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+.||++.+|-++ -+-.|.=.-|+|++|+|||.|+.+++.++
T Consensus 157 e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 157 DPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp STTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 57899999999997 46678889999999999999998888754
No 212
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.55 E-value=0.041 Score=46.76 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=23.7
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|.++-|.|.+|||||++|..|+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998754
No 213
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.54 E-value=0.074 Score=50.44 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=30.4
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
..+.-+-|+|++|+|||+++..++..... .+.++++||..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHH-------CCCEEEEEeCCcC
Confidence 34556789999999999999988876542 3455666665544
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.53 E-value=0.039 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.++-|.|++|||||+|+..++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998654
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.53 E-value=0.038 Score=48.18 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.8
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..+.++-|.|++|||||++|..|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578899999999999999999875
No 216
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.49 E-value=0.026 Score=50.16 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999887654
No 217
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.48 E-value=0.22 Score=42.67 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=22.7
Q ss_pred cccccchHHhhCCCCHHHHHHHHhCCCCc
Q psy13674 71 EFFQDVDILQNYNINVADIKKLKSVGLCT 99 (315)
Q Consensus 71 ~~~~~i~~L~~~gl~~~~i~kL~~aGi~T 99 (315)
....++......++++..++.|.+.||.+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~ 36 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEE 36 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCC
Confidence 34456677777889999999999988865
No 218
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.48 E-value=0.047 Score=48.74 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=25.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+....|+-|.|+|||||++.|..|+...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999999998764
No 219
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.46 E-value=0.074 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..-..|+|+||+|||.||..+|...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35668899999999999999998764
No 220
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.46 E-value=0.067 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.8
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...-+.|+|+||+|||.||..+|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999998754
No 221
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.42 E-value=0.04 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++.| +.|+||||+|||+|+..++...
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 4455 7899999999999999888653
No 222
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.41 E-value=0.06 Score=48.80 Aligned_cols=36 Identities=17% Similarity=-0.068 Sum_probs=28.8
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+-+.|++|+|||+++++++..... .+.+|+++|.+.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~-------~G~~V~v~d~D~ 44 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLR-------QGVRVMAGVVET 44 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-------CCCCEEEEEeCC
Confidence 667899999999999999987652 356788777764
No 223
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.40 E-value=0.043 Score=55.23 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=38.6
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|++....+..
T Consensus 142 ~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 142 SVYEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp CCCSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred ccCCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 34577999999999997 566677788999999999999987766643
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.39 E-value=0.059 Score=43.92 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=29.6
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccc--------------cCCCCCeEEEEeCCCCCChh
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDET--------------RGYTGGKVIYVDSENTLYPL 221 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~--------------~gg~~~~vvyIDtE~~F~~~ 221 (315)
..|+|+||+|||.+|..++.... |--. .....+.++|||--+.++++
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRN 90 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCHH
Confidence 67899999999999987754322 1000 00123567888866666654
No 225
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.38 E-value=0.15 Score=47.46 Aligned_cols=54 Identities=17% Similarity=0.006 Sum_probs=36.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC-CCChhhHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN-TLYPLLNIIAIAS 229 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~-~F~~~~Rl~~iae 229 (315)
...+.++||+|+|||+++..++..+.. .......+++++.++ ....+ -++++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~----~~~~~~d~~~l~~~~~~~~id-~ir~li~ 72 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEK----FPPKASDVLEIDPEGENIGID-DIRTIKD 72 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHT----SCCCTTTEEEECCSSSCBCHH-HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCch----hhccCCCEEEEcCCcCCCCHH-HHHHHHH
Confidence 458999999999999999999876421 111244678888764 45555 4555544
No 226
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.37 E-value=0.047 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.1
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++-|.|++|||||++|..|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998764
No 227
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.35 E-value=0.048 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 467899999999999999999887764
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.26 E-value=0.05 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.|.++-|.|++|||||++|..|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999864
No 229
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.25 E-value=0.034 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999999987754
No 230
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.24 E-value=0.034 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999887754
No 231
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.23 E-value=0.055 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=22.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||++|..|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999998753
No 232
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.23 E-value=0.053 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 467899999999999999999987764
No 233
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.18 E-value=0.067 Score=53.31 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=39.8
Q ss_pred hcCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 147 RKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 147 ~~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
..-...+.||++.+|.++ -+-.|.=.-|+|.+|+|||.|+.+++..+..
T Consensus 129 ~~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 129 DYPDEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp ECCCCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred cCcccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 344567999999999997 4555666778999999999999999887654
No 234
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.16 E-value=0.05 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|.|+||||||++|..|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999998753
No 235
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.15 E-value=0.035 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 477899999999999999999887653
No 236
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.08 E-value=0.051 Score=45.10 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..++-|.|++|||||++|..|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999865
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.06 E-value=0.14 Score=50.88 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=57.8
Q ss_pred cccEEEEecCCCCChhhHHHHHHH--HccCCccccCCCCCeEEEEeCCCCC--ChhhHHHHHHHHHHH------------
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSI--TAQLPDETRGYTGGKVIYVDSENTL--YPLLNIIAIASLVTL------------ 233 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~--~~~lp~~~~gg~~~~vvyIDtE~~F--~~~~Rl~~iaer~~l------------ 233 (315)
...+.-|+|..|+|||+||.+++. .... ...-..++|++....+ .+..-+.++++.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 225 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLI-----GINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH 225 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTB-----TTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHH-----hccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccccccccccc
Confidence 457889999999999999999985 1222 1234678999877653 454124445554431
Q ss_pred --HHHHHHHHHH-Hhhc-c-cEEEEEccCCCCcccccccccccccEEEEEE
Q psy13674 234 --VGSRLPMSFH-ITRE-D-LIVFFPLNADPKKPVGGNIMAHASTTRISLR 279 (315)
Q Consensus 234 --L~~~~~~L~~-LA~e-~-iaVV~~~~~~~~~PalG~~wah~~~tRl~L~ 279 (315)
...+...|+. |..+ . +.|++..+.. . .. .|......|+++.
T Consensus 226 ~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~--~-~~--~~~~~~gs~ilvT 271 (549)
T 2a5y_B 226 VTSVVLKRMICNALIDRPNTLFVFDDVVQE--E-TI--RWAQELRLRCLVT 271 (549)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEEEEEECCH--H-HH--HHHHHTTCEEEEE
T ss_pred ccHHHHHHHHHHHHcCCCcEEEEEECCCCc--h-hh--cccccCCCEEEEE
Confidence 2233445544 4454 5 7777654431 0 01 4554455566554
No 238
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.04 E-value=0.084 Score=53.83 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=39.6
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-...+.||++.+|.++ -+-.|.=.-|+|++|+|||.|+++++...
T Consensus 200 ~~~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKWS 245 (578)
T ss_dssp CSCSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred cCCCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence 45678999999999997 45667888999999999999999998764
No 239
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.01 E-value=0.053 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|++|||||+++..|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 56789999999999999998754
No 240
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.99 E-value=0.054 Score=47.02 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=22.9
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+..+-|.|+||||||++|..|+...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999998753
No 241
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.97 E-value=0.054 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.+.++-|+|.||||||++|..++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999875
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.97 E-value=0.077 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...-..|+|+||+|||++|..++...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 44557899999999999999998754
No 243
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.94 E-value=0.096 Score=52.09 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|+.+..-..|+||||+|||.+|..++...
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 45555568899999999999999997654
No 244
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.93 E-value=0.057 Score=54.29 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=40.5
Q ss_pred hhHHHhhcC-CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 158 TELDKILGG-GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 158 ~~LD~lL~G-Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.||++++| +-....+.-+.|.+|+|||+++..+|...+. .+.++++||+.
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-------~g~~vllvD~D 364 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-------MGFDVHLTTSD 364 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHH-------CCCcEEEEeCC
Confidence 667777754 3445667888999999999999999988752 56799999987
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.93 E-value=0.054 Score=51.51 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
++.|.++-|+|++|||||+|+..++-.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999999988654
No 246
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=92.93 E-value=0.018 Score=54.94 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
...||+.|+ |+.+-..-|+++||+|+.||+..+..+|.++.++-...+++|.+.+.+
T Consensus 253 l~~~I~eLe---LsvRs~NCLKra~I~tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~ 309 (329)
T 3lu0_A 253 LLRPVDDLE---LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 (329)
T ss_dssp ------------------------------------------------------------
T ss_pred hhhhHHhhc---CCHHHHHHHHHcCCcCHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHH
Confidence 456677776 999999999999999999999999999999999998887777766543
No 247
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.91 E-value=0.07 Score=54.49 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=39.4
Q ss_pred cCccceecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 148 ~~~~~isTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-..++.||++.+|.++ -+-.|.=.-|+|++|+|||.|+++++...
T Consensus 206 ~~~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 251 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLAKWS 251 (588)
T ss_dssp CSCSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred cCCcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence 44578999999999997 56668888999999999999999988753
No 248
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.90 E-value=0.038 Score=51.83 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.|++|+|||+|..-++-
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 478899999999999999999876653
No 249
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.87 E-value=0.055 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=20.0
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+.|+||+|+|||+++..++...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998764
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.84 E-value=0.067 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.0
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+.|+||+|+|||+++..+|...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998764
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.80 E-value=0.052 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|+||||||+++..|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57789999999999999998753
No 252
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.80 E-value=0.081 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=32.3
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
..|.|.-++|+.|+|||+.+++++.++. +.+.+|+++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-------~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-------FAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-------HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCEEEEEE
Confidence 4588999999999999999999999875 3567787774
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.77 E-value=0.14 Score=47.13 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.|.-..+-+|+|||+++..||...+. .+.+|+.||+.-
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~-------~G~rVLLID~D~ 131 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQ-------TNKRVLLIDCDM 131 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHT-------TTCCEEEEECCT
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh-------CCCCEEEEeccC
Confidence 34444556899999999999988763 578999999884
No 254
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.73 E-value=0.13 Score=45.12 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=32.0
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
...++-+.|.+|+|||+++.+++.... .+.+++.||.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~--------~g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE--------DNYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT--------TTSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH--------CCCeEEEEeCCC
Confidence 456889999999999999999987643 356888898773
No 255
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.72 E-value=0.089 Score=47.18 Aligned_cols=38 Identities=18% Similarity=0.025 Sum_probs=26.9
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+.|+||+|+|||+++..++....-+ +....+++++...
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~-----~~~~~~~~~~~~~ 78 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGE-----NWRDNFIEMNASD 78 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTT-----CHHHHCEEEETTS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCC-----cccCCeEEEeCcc
Confidence 7899999999999999998765211 1133456666543
No 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.69 E-value=0.2 Score=54.97 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=38.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHH-HHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNI-IAIAS 229 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl-~~iae 229 (315)
..++-|+|+.|+|||+||.+++....+- .....+++|++-...+.+. ++ ..+++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~----~~Fd~gV~WVsVs~~~d~~-~IL~~Ll~ 204 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQ----CKMDFKIFWLNLKNCNSPE-TVLEMLQK 204 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHH----HHHSSCEEEEECCCSSSHH-HHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHH----HhCCCcEEEEEeCCCCCHH-HHHHHHHH
Confidence 5789999999999999999998643221 1234579999988777776 43 34443
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.69 E-value=0.091 Score=46.71 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=32.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLY 219 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~ 219 (315)
.++-|.|++|||||++|..|+...-.+. ....+..+++||+..-++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~--~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE--VDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG--SCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc--ccccCCceEEEecCcccc
Confidence 4788999999999999999987543220 001346788899886443
No 258
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.69 E-value=0.069 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..++-|.|++|||||++|..|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999865
No 259
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.62 E-value=0.052 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+-|+||||+|||+|+..+|...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999999998764
No 260
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.61 E-value=0.4 Score=44.45 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=24.4
Q ss_pred cccccccchHHhhCCCCHHHHHHHHhCCCCc
Q psy13674 69 GEEFFQDVDILQNYNINVADIKKLKSVGLCT 99 (315)
Q Consensus 69 ~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~T 99 (315)
...+...+..+...++++...+.|.+.|+..
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~ 62 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEK 62 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCS
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCC
Confidence 3445556677778899999999999999875
No 261
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.58 E-value=0.067 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|.+|||||++|..|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.57 E-value=0.07 Score=47.05 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=23.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++-|+||+|+|||+|+..|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 68899999999999999999988653
No 263
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.56 E-value=0.079 Score=45.39 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|+||||||++|..|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999998653
No 264
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.55 E-value=0.13 Score=48.88 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=38.7
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc--CCccccCCCCCeEEEEeCCC
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ--LPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~--lp~~~~gg~~~~vvyIDtE~ 216 (315)
+.|+.++.. ....|.-+.|-.|+|||+++..+|...+ . .+.+|+.||+.-
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-------~G~rVLLvD~D~ 58 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ-------PNKQFLLISTDP 58 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHC-------TTSCEEEEECCS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-------CCCeEEEEECCC
Confidence 456777753 2356888899999999999999998765 3 567899998873
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.50 E-value=0.075 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=21.8
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++.-..|+||||+|||.+|..+|...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34557889999999999999998764
No 266
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.50 E-value=0.13 Score=48.98 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=49.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhH-hccc---------c-chHHHHHHhhcCccceecCChhHHHhhcCCCCcccEE
Q psy13674 106 TTRRKMSQIKGFSEAKVDKIKEACMKI-CDNS---------F-LTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAIT 174 (315)
Q Consensus 106 ~~~~~L~~~~gis~~~v~ki~~~~~~~-~~~~---------~-~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~It 174 (315)
.++.++++.+|++...++.++..+... ..++ + .|..++.+-+... +....- ..+-....|.
T Consensus 44 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-----~~~~~r---~~~~~~~vIa 115 (403)
T 3ez9_A 44 FTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQVGNVEQYALTIQNVIDIYAHR-----KIPKYR---DIHKSPYVIF 115 (403)
T ss_dssp BCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEEETTEEEECBCHHHHHHHHHHT-----TCCCHH---HHSCSCEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCCCCceeeeccCHHHHHHHHHHh-----ccCCcC---CCCCCceEEE
Confidence 456789999999998887776654321 1110 1 2444443322110 000000 0111223455
Q ss_pred EEecCCCCChhhHHHHHHHHccCCccccC---CCCCeEEEEeCCC
Q psy13674 175 EAFGEFRTGKTQLSHTLSITAQLPDETRG---YTGGKVIYVDSEN 216 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~~~lp~~~~g---g~~~~vvyIDtE~ 216 (315)
-+.|-.|+|||+++.++|...+. .| ..+.+|+.||..-
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~----~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRV----HQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp ECCC--------CHHHHHHHHHS----CGGGGGGCCCEEEEEESS
T ss_pred EEcCCCCchHHHHHHHHHHHHHh----cchhhcCCCeEEEEeCCC
Confidence 55688999999999999987652 11 2478999999873
No 267
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=92.48 E-value=0.31 Score=45.61 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+++++..+++|.++|+.|+.||...++.++.++++++.....++.+.+.+
T Consensus 163 p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 163 PHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999988888877764
No 268
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.47 E-value=0.064 Score=44.07 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++-|.|++|||||++|..|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999875
No 269
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.45 E-value=0.064 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhc
Confidence 467899999999999999999887764
No 270
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.45 E-value=0.09 Score=45.13 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|+||||||++|..|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998653
No 271
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.44 E-value=0.074 Score=47.61 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..|.++-|.|++|||||+++..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999998843
No 272
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.44 E-value=0.065 Score=51.44 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 467899999999999999999887764
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.42 E-value=0.072 Score=46.15 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||++|..|+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999998753
No 274
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.42 E-value=0.054 Score=50.28 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=32.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCC--CCCeEEEEeCCCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY--TGGKVIYVDSENTL 218 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg--~~~~vvyIDtE~~F 218 (315)
-++.|.++-|.|++|+|||+|..-++-- ++.. .|. ..+++-|+.-+..+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~-~G~I~~~g~i~~v~Q~~~l 110 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPS-EGKIKHSGRISFCSQNSWI 110 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTS--SCEE-EEEEECCSCEEEECSSCCC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCC-CcEEEECCEEEEEeCCCcc
Confidence 4678999999999999999998876532 2211 111 13356777665443
No 275
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.39 E-value=0.061 Score=51.61 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999999887764
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.34 E-value=0.076 Score=45.69 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.++-|.|++|||||+++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999887653
No 277
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.28 E-value=0.12 Score=47.37 Aligned_cols=24 Identities=25% Similarity=-0.020 Sum_probs=20.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-..|+|+||+|||+|+..++...
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357799999999999999998754
No 278
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.28 E-value=0.076 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|++|+|||+|+..++-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998887543
No 279
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.25 E-value=0.086 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
..| ++-|+|++|+|||+|.-.++.
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 345 899999999999999776654
No 280
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.24 E-value=0.099 Score=51.80 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=35.9
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.|.+.|..+-....++-|+|++|+|||+|+.+++....... +.....++|++...
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE---GCFPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH---HHCTTCEEEEEEES
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH---hhCCCceEEEECCC
Confidence 45556643223467899999999999999999875421100 01235688988654
No 281
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.23 E-value=0.1 Score=46.17 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=33.2
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.|.|.-|+|+.|+|||+.+++.+.+... .+.+|+|+..+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEccc
Confidence 5889999999999999999998888753 45889998766
No 282
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.21 E-value=0.45 Score=43.98 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=51.6
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHhccccchHHHHHHhhcCccce
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKI 153 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~~~~~~tA~ell~~~~~~~~i 153 (315)
.++..++..+|++..++.|.+.||.+...+ + ..
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~-----------------Q-----~~------------------------- 54 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKI-----------------Q-----EN------------------------- 54 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHH-----------------H-----HH-------------------------
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHH-----------------H-----HH-------------------------
Confidence 345666777999999999999999653211 1 11
Q ss_pred ecCChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 154 TTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 154 sTG~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
.+..++.| .+.-..+.+|.|+|||..++..+..... .+....+++|+.-
T Consensus 55 -----~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~~----~~~~~~~~lil~P 103 (412)
T 3fht_A 55 -----ALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVE----PANKYPQCLCLSP 103 (412)
T ss_dssp -----HHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHCC----TTSCSCCEEEECS
T ss_pred -----HHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHhh----hcCCCCCEEEECC
Confidence 12233333 2456788999999999776555554433 1234557888753
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.21 E-value=0.083 Score=47.04 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|.|+||||||++|..|+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999998653
No 284
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.15 E-value=0.073 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHc
Confidence 467899999999999999999887764
No 285
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.15 E-value=0.067 Score=51.50 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 467899999999999999999887764
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.11 E-value=0.063 Score=49.07 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++ |.++-|.|++|+|||+|..-++-
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 467 99999999999999999887754
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.11 E-value=0.077 Score=47.74 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++. .++-|.|++|+|||+|..-++-
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 4667 8999999999999999997764
No 288
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.11 E-value=0.3 Score=51.77 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=39.0
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
.|.++|..+-....++-|+|+.|+|||+||.+++.....- .+.....++|++....+..
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL---EGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHH---TTTSTTCEEEEECCSCCHH
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHH---HhhCCCeEEEEEECCcCch
Confidence 4555553222345688899999999999999987653110 1224678899998765443
No 289
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.10 E-value=0.25 Score=35.61 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=44.4
Q ss_pred cchHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHH-HHHHHHHHH
Q psy13674 75 DVDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAK-VDKIKEACM 130 (315)
Q Consensus 75 ~i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~-v~ki~~~~~ 130 (315)
|.+.|.. +||++...++|-+ .|.|+++|..++.++|++. ++... |++|.+...
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSI--LGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHhHHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHh
Confidence 6778888 8999999999986 7899999999999999999 45556 777766543
No 290
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.08 E-value=0.15 Score=45.14 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=31.0
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
++-|+|-.|+|||+++.++|...+. .+.+|+.||....
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~-------~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHA-------MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT-------TTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHH-------CCCcEEEEcCCCC
Confidence 4455789999999999999988752 4679999998843
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.07 E-value=0.1 Score=42.95 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|.|.+|||||+++..|+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 577899999999999999998753
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.06 E-value=0.086 Score=43.14 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
++-|.|.+|||||++|..|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999875
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.02 E-value=0.083 Score=45.00 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~ 193 (315)
++-|.|++|||||+++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998864
No 294
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.98 E-value=0.089 Score=44.03 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|++|||||++|..|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 295
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.97 E-value=0.17 Score=47.75 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=37.2
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.|+.++... ...|.-+.|-.|+|||+++..+|...+. .+.+|+.||+.
T Consensus 6 ~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~-------~g~~vllid~D 53 (334)
T 3iqw_A 6 TLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAK-------VRRSVLLLSTD 53 (334)
T ss_dssp SSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTT-------SSSCEEEEECC
T ss_pred cHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHh-------CCCcEEEEECC
Confidence 455566442 3467888999999999999999988752 56789999987
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.96 E-value=0.11 Score=49.67 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=24.6
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..|.++-|+|++|||||+|...++-..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999999998887643
No 297
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.95 E-value=0.055 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 467899999999999999999987764
No 298
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.95 E-value=0.11 Score=47.99 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=28.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.-..|+|+||+|||.+|..++.... ..+...++|++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~-------~~~~~~v~v~~~ 62 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA-------RSDRPLVTLNCA 62 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS-------CSSSCCCEEECS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc-------ccCCCeEEEeCC
Confidence 34567999999999999999877532 234567778765
No 299
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.91 E-value=0.1 Score=52.50 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+++|+++-|.|++|+|||+|..-++--
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999998877653
No 300
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.85 E-value=0.25 Score=46.97 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=57.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhH-hccc---------c-chHHHHHHhhcCccceecCChhHHHhhcCCCCcccEE
Q psy13674 106 TTRRKMSQIKGFSEAKVDKIKEACMKI-CDNS---------F-LTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAIT 174 (315)
Q Consensus 106 ~~~~~L~~~~gis~~~v~ki~~~~~~~-~~~~---------~-~tA~ell~~~~~~~~isTG~~~LD~lL~GGl~~g~It 174 (315)
.+..+|++++|++...+++++...... ..++ + .+..++.+-+.... +. ..-..+-....|.
T Consensus 41 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~-~~-------~~~~~~~~~~vIa 112 (398)
T 3ez2_A 41 YAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRG-VP-------KYRDRYSEAYVIF 112 (398)
T ss_dssp BCGGGGGGSTTCCHHHHHHHHHHHHHHTCCCCEEECSSSEEECBCHHHHHHHHHHTT-CC-------CGGGTCCSCEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCCCCCeeeecCCHHHHHHHHHHhc-cc-------ccCcCCCCCeEEE
Confidence 456788899999998888777764221 1111 1 13444432221110 00 0001222233455
Q ss_pred EEecCCCCChhhHHHHHHHHccCCccccC---CCCCeEEEEeCCC
Q psy13674 175 EAFGEFRTGKTQLSHTLSITAQLPDETRG---YTGGKVIYVDSEN 216 (315)
Q Consensus 175 Ei~G~~GsGKTqLalqla~~~~lp~~~~g---g~~~~vvyIDtE~ 216 (315)
-..|-.|+|||+++.++|...+. .| ..+.+|+.||...
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~----~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRA----HPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHH----CTTTGGGCCCEEEEEECT
T ss_pred EEeCCCCccHHHHHHHHHHHHHh----cchhhcCCCeEEEEeCCC
Confidence 55688999999999999987642 00 1478999999884
No 301
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.79 E-value=0.19 Score=43.51 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=29.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCC-CCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT-GGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~-~~~vvyIDtE~~ 217 (315)
|.-..+-.|+|||+++.++|...+. . +.+|++||....
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~-------~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQ-------EPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTT-------STTCCEEEEECCTT
T ss_pred EEEECCCCCcchHHHHHHHHHHHHh-------CcCCCEEEEECCCC
Confidence 3344456899999999999998753 4 789999998843
No 302
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.75 E-value=0.12 Score=43.60 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=44.1
Q ss_pred EecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCChhhHHHHHHHHH--HH------HHHHHHHHHHHhhc
Q psy13674 176 AFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLV--TL------VGSRLPMSFHITRE 247 (315)
Q Consensus 176 i~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~~~Rl~~iaer~--~l------L~~~~~~L~~LA~e 247 (315)
..+-.|+|||+++.++|..... .+.+|++||.....+.. .....- ++ -..+...|..+..+
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~-------~g~~vlliD~D~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 75 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSR-------SGYNIAVVDTDPQMSLT----NWSKAGKAAFDVFTAASEKDVYGIRKDLAD 75 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCTTCHHH----HHHTTSCCSSEEEECCSHHHHHTHHHHTTT
T ss_pred EeCCCCccHHHHHHHHHHHHHH-------CCCeEEEEECCCCCCHH----HHHhcCCCCCcEEecCcHHHHHHHHHhcCC
Confidence 3466899999999999988652 56799999988432222 221110 00 13455666777778
Q ss_pred c-cEEEEE
Q psy13674 248 D-LIVFFP 254 (315)
Q Consensus 248 ~-iaVV~~ 254 (315)
| +.||++
T Consensus 76 yD~viiD~ 83 (206)
T 4dzz_A 76 YDFAIVDG 83 (206)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEC
Confidence 8 888863
No 303
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.71 E-value=0.11 Score=46.20 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
....|.++-|.|++|||||+++..++...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999998764
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.70 E-value=0.095 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|..+.|.|++|+|||+|++.|+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 566889999999999999999865
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.69 E-value=0.084 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.112 Sum_probs=21.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|.++-|.|++|+|||+|+..++-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5678899999999999998887653
No 306
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.68 E-value=0.071 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
..|+|+||+|||.||..++...
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 7899999999999999998764
No 307
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.67 E-value=0.092 Score=44.57 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~ 193 (315)
++-|.|++|||||+++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 577999999999999998875
No 308
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.64 E-value=0.13 Score=44.45 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=29.3
Q ss_pred EecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 176 AFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 176 i~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|.|-.|+|||+++.++|...+. .+.+|+.||...
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~-------~g~~VlliD~D~ 38 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMAS-------DYDKIYAVDGDP 38 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTT-------TCSCEEEEEECT
T ss_pred EecCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCC
Confidence 4899999999999999988762 468999999875
No 309
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.61 E-value=0.34 Score=44.98 Aligned_cols=26 Identities=15% Similarity=-0.144 Sum_probs=22.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
...+.++||+|+|||+++..+|....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 45789999999999999999987754
No 310
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.61 E-value=0.088 Score=51.08 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 467899999999999999999987764
No 311
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.61 E-value=0.12 Score=51.52 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
-++.| +.|+||||+|||.|+..++.....
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 34445 669999999999999999876543
No 312
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.59 E-value=0.098 Score=49.22 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.|.++-|.|++|||||+|..-++--
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998876643
No 313
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.57 E-value=0.095 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=23.0
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++.|+||||+|||+|+..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999887653
No 314
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.54 E-value=0.075 Score=46.70 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=22.5
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
....|.++-|.|++|||||+|+..++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999988664
No 315
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.54 E-value=0.11 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=20.0
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+.|+||+|+|||+++..++...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988754
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.53 E-value=0.17 Score=46.87 Aligned_cols=28 Identities=14% Similarity=-0.065 Sum_probs=23.6
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-..+.++-|+|++|||||+|+..++...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999887654
No 317
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.49 E-value=0.078 Score=48.93 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=28.0
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTL 218 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F 218 (315)
+.++-|.|++|||||++|..|+... |..+..+.+||+..-+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l-------g~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF-------RREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH-------HHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH-------hhcCCCeeEeecchhh
Confidence 4578899999999999999997642 1123458889988644
No 318
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.47 E-value=0.098 Score=52.72 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-+++|+++-|.|++|+|||+|..-++--
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4678999999999999999999877653
No 319
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.38 E-value=0.33 Score=42.40 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=22.5
Q ss_pred cccccchHHhhCCCCHHHHHHHHhCCCCch
Q psy13674 71 EFFQDVDILQNYNINVADIKKLKSVGLCTI 100 (315)
Q Consensus 71 ~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv 100 (315)
++..++...++.++++..++.|.+.||...
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~ 53 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKP 53 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSC
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCC
Confidence 355567778888999999999999888643
No 320
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.37 E-value=0.052 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|++|||||+++..|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999999998754
No 321
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.35 E-value=0.099 Score=52.83 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|+++-|.|++|+|||+|..-++--
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999877653
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.35 E-value=0.12 Score=44.40 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=22.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..-.++-|+|++|+|||+|+..++...
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345688999999999999999987653
No 323
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.35 E-value=0.22 Score=47.41 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=37.9
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHcc--CCccccCCCCCeEEEEeCC
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ--LPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~--lp~~~~gg~~~~vvyIDtE 215 (315)
.|+.++.. ....|.-+.|-.|+|||+++..+|...+ . .+.+|+.||+.
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-------~g~~vllid~D 57 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-------PNEQFLLISTD 57 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC-------TTSCEEEEECC
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-------CCCeEEEEECC
Confidence 46667753 2347899999999999999999998765 3 56788888886
No 324
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.33 E-value=0.11 Score=54.82 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|+..+.-+.|+|+||||||+|+..++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 6788889999999999999999988764
No 325
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.32 E-value=0.16 Score=47.31 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=33.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..|.-+.|-.|+|||+++..+|...+. .+.+|+.||+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~-------~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR-------SGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH-------CCCcEEEEeCCC
Confidence 368888999999999999999988752 578999999874
No 326
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.32 E-value=0.056 Score=51.65 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|.++-|.||+|||||+|..-++-
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999999887764
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.28 E-value=0.2 Score=48.84 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=33.4
Q ss_pred hHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 159 ELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 159 ~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
.|+.++ ...|.++-|.|++|||||+|...++-... | ..++++++..
T Consensus 158 ~L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l~-~------~~g~I~~~ed 203 (418)
T 1p9r_A 158 NFRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQELN-S------SERNILTVED 203 (418)
T ss_dssp HHHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHHC-C------TTSCEEEEES
T ss_pred HHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhcC-C------CCCEEEEecc
Confidence 355554 36788999999999999999988776532 1 3466776654
No 328
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.25 E-value=0.21 Score=46.61 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...|.-+.|-.|+|||+++..+|...+. .+.+|+.||+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~-------~G~rVllvD~D 56 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSK-------VRSSVLLISTD 56 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHT-------SSSCEEEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH-------CCCeEEEEECC
Confidence 3567788999999999999999988752 57899999986
No 329
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.25 E-value=0.12 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..+.|+|++|+|||+++..++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 330
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.23 E-value=0.17 Score=44.68 Aligned_cols=37 Identities=35% Similarity=0.409 Sum_probs=30.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|.-..+-.|+|||+++..+|...+. .+.+|++||...
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~-------~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQ-------LGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHH-------TTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh-------CCCcEEEEECCC
Confidence 4555778999999999999987652 467999999874
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.20 E-value=0.11 Score=43.66 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~ 193 (315)
..++-|.|++|||||+++..|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999875
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.18 E-value=0.17 Score=47.65 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=30.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..++-|+|.||+|||+|+..++.... ..+.++..||..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~-------~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI-------ERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-------TTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-------hCCCceEEEecC
Confidence 34788999999999999999987754 245677777766
No 333
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.09 E-value=0.15 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-++.| +.|+||||+|||+|+..++...
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 44555 7899999999999999988754
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.05 E-value=0.15 Score=44.68 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=21.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+..+-|.|++|||||++|..|+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998763
No 335
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.02 E-value=0.12 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++-|.|+||||||+++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999863
No 336
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.00 E-value=0.17 Score=43.66 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|.-..+-.|+|||+++..+|...+. .+.+|++||...
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~-------~g~~VlliD~D~ 41 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGD-------RGRKVLAVDGDL 41 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-------cCCeEEEEeCCC
Confidence 4444567899999999999987652 467999999874
No 337
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.93 E-value=0.2 Score=45.54 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred ccEEEEecC-CCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFGE-FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G~-~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..++-|++. +|+|||+++..||...+. .+.+|+.||..-
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~-------~G~rVLLID~D~ 121 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQ-------AGYKTLIVDGDM 121 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHh-------CCCeEEEEeCCC
Confidence 456666654 899999999999988752 578999999883
No 338
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.87 E-value=0.23 Score=46.89 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.-+...|.-+.|-.|+|||+++..+|...+. .+.+|+.||+.-
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~-------~G~rVLlvD~D~ 64 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAE-------KGLKVVIVSTDP 64 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHH-------SSCCEEEEECCT
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHH-------CCCeEEEEeCCC
Confidence 3455678888999999999999999988752 477999999873
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.86 E-value=0.16 Score=45.84 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
++-|+|-.|+|||+++.++|...+. .+.+|+.||....
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~-------~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAE-------MGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH-------TTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHH-------CCCeEEEEecCCC
Confidence 4455799999999999999988652 4679999998843
No 340
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.85 E-value=0.13 Score=44.95 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
++-|.|+||||||++|..|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999865
No 341
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.85 E-value=0.27 Score=43.60 Aligned_cols=25 Identities=4% Similarity=0.088 Sum_probs=19.5
Q ss_pred chHHhhCCCCHHHHHHHHhCCCCch
Q psy13674 76 VDILQNYNINVADIKKLKSVGLCTI 100 (315)
Q Consensus 76 i~~L~~~gl~~~~i~kL~~aGi~Tv 100 (315)
+...++.|+++..++.|++.||.+.
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~ 66 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKP 66 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCC
Confidence 4456667899999999999988653
No 342
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.84 E-value=0.18 Score=50.53 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=33.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..|+-+.|.+|+|||+++..+|...+. .+.+|++||+.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~-------~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAE-------QGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHH-------CCCcEEEEECC
Confidence 568889999999999999999988752 47799999988
No 343
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=90.81 E-value=0.54 Score=44.22 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
+++++..+++|.++|+.|+.+|...++.++...++++..+..++.+.+.+
T Consensus 167 p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 167 PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999887777665543
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.80 E-value=0.21 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|+|++|+|||+|+..++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999987754
No 345
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=90.80 E-value=0.045 Score=51.93 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~ 130 (315)
...||+.|+ |+.+-..-|+++||+|+.||+..+..+|.++.++-...++.|++.+.
T Consensus 252 l~~~i~~L~---LsvRs~NcLk~a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~~~L~ 307 (315)
T 2a6h_A 252 LDLPLEELG---LSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALE 307 (315)
T ss_dssp -----------------------------------------------------------
T ss_pred ccCcHHHcc---CcHHHHHHHHHcCCcCHHHHhhCCHHHHhcCCCCCcchHHHHHHHHH
Confidence 346777777 99999999999999999999999999999999988877777766554
No 346
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.77 E-value=0.14 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~ 193 (315)
+.++-|.|++|||||+++..|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999875
No 347
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.76 E-value=0.14 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|+++-|.|++|+|||+|..-++-
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 478899999999999999999886654
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.75 E-value=0.15 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
....|+||||+|||+|+..++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999998764
No 349
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.70 E-value=0.13 Score=44.24 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|+||||||++|..|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998753
No 350
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.64 E-value=0.21 Score=46.12 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=31.5
Q ss_pred ccEEEEecC-CCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFGE-FRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G~-~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
..++-|++. +|+|||++|..||...+. .+.+|+.||..-
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~-------~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQ-------SDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHH-------TTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHh-------CCCcEEEEECCC
Confidence 456666665 899999999999988752 578999999874
No 351
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.53 E-value=0.09 Score=55.37 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHHHccC
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~~~~l 197 (315)
-|+.++..+.|+||||+|||+|+..+|.....
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 47788888999999999999999999877543
No 352
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.52 E-value=0.21 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...|+||||+|||.+|..++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 353
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.49 E-value=0.15 Score=43.00 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++-|.|++|||||+++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 77899999999999999987753
No 354
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.44 E-value=0.15 Score=44.34 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
+.|+||+|+|||+|+..|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999998765
No 355
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.34 E-value=0.16 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.5
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.++-|+||+|+|||+|+..||...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998753
No 356
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.31 E-value=0.19 Score=46.38 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=25.9
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
|++.|-..+ .|.++-|.|++|+|||+|...++
T Consensus 155 gi~~L~~~l-----~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYL-----EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHT-----TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhc-----cCcEEEEECCCCCCHHHHHHHHH
Confidence 445555544 47899999999999999999988
No 357
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.29 E-value=0.24 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++-|+|++|||||+|+..+|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999875
No 358
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.14 Score=50.64 Aligned_cols=27 Identities=33% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..|.++-|.|++|||||+|+.-++--
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999987653
No 359
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.21 E-value=0.22 Score=44.36 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=30.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
.|.-..+-.|+|||+++..+|...+. .+.+|++||....
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~-------~G~~VlliD~D~~ 58 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYAR-------QGKKVGILDADFL 58 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHH-------TTCCEEEEECCSS
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCCC
Confidence 35555677899999999999987652 4678999997743
No 360
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.11 E-value=0.88 Score=43.72 Aligned_cols=41 Identities=12% Similarity=-0.060 Sum_probs=26.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.-+.+.++.|+|||...+..+..... .+.....++|+.-.
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l~----~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVE----PANKYPQCLCLSPT 171 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTCC----TTSCSCCEEEECSS
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHh----hcCCCCcEEEEeCh
Confidence 467889999999999765555554432 12234478887533
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.98 E-value=0.12 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|.++-|.|++|||||+++..++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7889999999999999999998753
No 362
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.83 E-value=0.22 Score=47.74 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.1
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|+..|...+ .|.++-|.|++|+|||+|...|+-.
T Consensus 205 gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 205 GLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp THHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhcc
Confidence 556666654 5689999999999999999888643
No 363
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.81 E-value=0.25 Score=43.18 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=29.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|.-..+-.|+|||+++.++|...+. .+.+|++||...
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~-------~g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQ-------KGKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEECCC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHh-------CCCcEEEEECCC
Confidence 3444566899999999999988752 577999999885
No 364
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.76 E-value=0.21 Score=43.84 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
-..+.++-|.|++|||||+++..++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999999999988764
No 365
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.73 E-value=0.29 Score=42.33 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=29.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
|.-..+-.|+|||+++..+|..... .+ +|+.||....
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~-------~g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL-------QG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT-------TS-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh-------cC-CEEEEECCCC
Confidence 4445677899999999999988652 45 9999998853
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.66 E-value=0.17 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred CcccEEEEecCCCCChhhHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
..|.++-|+|++|||||+|...++-
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5788899999999999999987754
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.65 E-value=0.19 Score=47.95 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=22.1
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..|.++-|.|++|||||+|...++-.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56679999999999999998877554
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.63 E-value=0.25 Score=48.77 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
++++. +.++|+||+|||+++..+|...-
T Consensus 48 ~~~~~-iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 48 VTPKN-ILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCce-EEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444 67999999999999999987653
No 369
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.61 E-value=0.16 Score=49.03 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.9
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
...++.|+|+||||||++|..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998754
No 370
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=89.60 E-value=0.36 Score=45.63 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhC
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKG 116 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~g 116 (315)
+..||..|. ||.+...++|++.||+|+.||...++..|.+..|
T Consensus 176 ~~lpv~~l~--GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG 218 (356)
T 4dez_A 176 GDRPPDALW--GVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG 218 (356)
T ss_dssp TTSCGGGST--TCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC
T ss_pred hcCcHHHHc--CCchhHHHHHHHcCCCeecccccCCHHHHHHHhC
Confidence 456777776 9999999999999999999999999999999998
No 371
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.59 E-value=0.14 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+++|+++-|.|++|+|||+|..-++-
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999876643
No 372
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.50 E-value=0.2 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|+|++|||||+||..|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378899999999999999998753
No 373
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.48 E-value=0.21 Score=47.04 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=23.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+..|.++-|.|+||+|||+|...++-.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988754
No 374
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.48 E-value=0.11 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-++.|+++-|.||+|+|||+|..-++-
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhc
Confidence 368899999999999999999875543
No 375
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.38 E-value=0.7 Score=39.51 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=24.2
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDt 214 (315)
..+.++.|+|||...+-.+...... ...+.+++|+.-
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~----~~~~~~~lil~P 80 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKP----ERAEVQAVITAP 80 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCT----TSCSCCEEEECS
T ss_pred EEEECCCCChHHHHHHHHHHHHHHh----CcCCceEEEEcC
Confidence 4688999999997655444444321 124567888873
No 376
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.37 E-value=0.2 Score=50.23 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999887764
No 377
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.36 E-value=0.7 Score=34.98 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=47.7
Q ss_pred cchHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy13674 75 DVDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMK 131 (315)
Q Consensus 75 ~i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~ 131 (315)
.+..|.. +||++....+|-+. |.+++++...++.+|.++.|+....+..|+.....
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4566755 79999999988774 77999999999999999999999999999877653
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.31 E-value=0.2 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..++-|.|++|||||++|..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999988754
No 379
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.22 E-value=0.1 Score=52.26 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.-..|+||||+|||.||..++...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 457899999999999999987654
No 380
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.15 E-value=0.31 Score=46.13 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=29.6
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.|.-..|-.|+|||+++.++|...+. .+.+|++||.+
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~-------~g~rVlliD~D 181 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHAN-------MGKKVFYLNIE 181 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH-------HTCCEEEEECC
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHh-------CCCCEEEEECC
Confidence 34444568999999999999987652 46799999988
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.11 E-value=0.18 Score=47.43 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=27.5
Q ss_pred hhcCCCCc--ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 163 ILGGGIES--MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 163 lL~GGl~~--g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+.--+.. |..+-|.|++|||||+|+..++-..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44456667 8999999999999999999988764
No 382
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.08 E-value=1.2 Score=41.40 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=25.7
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.+.++.|+|||...+-.+..... ....+.+++|+.-.
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~----~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLD----IQVRETQALILAPT 114 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCC----TTSCSCCEEEECSS
T ss_pred EEEECCCCCCchHHHHHHHHHHHh----hccCCceEEEEcCc
Confidence 678999999999766655555432 12246688887743
No 383
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.08 E-value=0.21 Score=50.50 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=30.9
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+..|.++-|.|++|||||+|+..|+.... | ..++.+.|+|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~-~-----~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM-E-----MGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH-T-----TCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc-c-----cCCceEEEECCc
Confidence 34689999999999999999999887642 1 112356678764
No 384
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.06 E-value=1.2 Score=38.59 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=20.2
Q ss_pred ccccchHHhh----CCCCHHHHHHHHhCCCCc
Q psy13674 72 FFQDVDILQN----YNINVADIKKLKSVGLCT 99 (315)
Q Consensus 72 ~~~~i~~L~~----~gl~~~~i~kL~~aGi~T 99 (315)
.+.|+....+ .++++..++.|.+.||..
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~ 51 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQM 51 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCS
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCC
Confidence 4445555554 389999999999998864
No 385
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.95 E-value=0.22 Score=48.93 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCCcccE--EEEecCCCCChhhHHHHHHHH
Q psy13674 167 GIESMAI--TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 167 Gl~~g~I--tEi~G~~GsGKTqLalqla~~ 194 (315)
-++.|.+ +-|.|++|+|||+|...++-.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5788999 999999999999998887643
No 386
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.84 E-value=0.37 Score=43.77 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=31.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
.|.|.-++|+-|+|||+.+++.+.++. +.+.+|+++.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-------~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-------IAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-------TTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCeEEEEe
Confidence 489999999999999999999999875 3566777765
No 387
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.80 E-value=0.15 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
|..+.|+||||+|||+|+..++...
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4588999999999999999988743
No 388
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.71 E-value=0.33 Score=45.50 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=29.2
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+.++-|.|++|+|||+|+..++....- .++++..++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-------~~~~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR-------EGLKVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCeEEEEeec
Confidence 45778899999999999999999765431 24455555544
No 389
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.71 E-value=0.23 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
+.++-|+||+|||||+|+..+|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 347889999999999999999865
No 390
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.67 E-value=0.35 Score=42.86 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=30.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
.|.-..+-.|+|||+++..+|...+ .+.+|+.||....
T Consensus 29 vI~v~s~kGGvGKTT~a~~LA~~la--------~g~~VlliD~D~~ 66 (267)
T 3k9g_A 29 IITIASIKGGVGKSTSAIILATLLS--------KNNKVLLIDMDTQ 66 (267)
T ss_dssp EEEECCSSSSSCHHHHHHHHHHHHT--------TTSCEEEEEECTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH--------CCCCEEEEECCCC
Confidence 3444467789999999999998753 4689999998854
No 391
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.65 E-value=0.28 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..+.-|+||+|||||+|+..+|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457889999999999999999876
No 392
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.62 E-value=0.2 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHcc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~ 196 (315)
.=+.|+|++|+|||.+...++.++.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~ 78 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGL 78 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999766665543
No 393
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.49 E-value=0.64 Score=46.82 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=29.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
+.++-+.|.+|||||++|..|+.... ..+..+.++|.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~-------~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ-------ARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-------HTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh-------hcCCeEEEECch
Confidence 67889999999999999999987532 124567788754
No 394
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.48 E-value=1.4 Score=40.18 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=20.0
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCc
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCT 99 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~T 99 (315)
.++..+...+|++..++.|.+.||.+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~ 114 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNR 114 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCS
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCC
Confidence 34566777788998888888888855
No 395
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.47 E-value=0.29 Score=44.16 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=30.3
Q ss_pred ccEEEEec---CCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 171 MAITEAFG---EFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 171 g~ItEi~G---~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
+.++-|++ -.|+|||+++.++|...+. .+.+|+.||...
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~-------~G~rVlliD~D~ 75 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK-------LNLKVLMIDKDL 75 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH-------TTCCEEEEEECT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh-------CCCeEEEEeCCC
Confidence 34555554 8999999999999987652 467999999874
No 396
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=88.45 E-value=0.46 Score=44.81 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=43.4
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHH
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEAC 129 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~ 129 (315)
+..||..|. ||.+.+.++|++.||+|+.||...++..|.+..|.. ....+.+.+
T Consensus 177 ~~lpv~~l~--GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~~--~g~~l~~~a 230 (354)
T 3bq0_A 177 NELDIDEIP--GIGSVLARRLNELGIQKLRDILSKNYNELEKITGKA--KALYLLKLA 230 (354)
T ss_dssp HHCBSTTST--TCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCHH--HHHHHHHHH
T ss_pred HhCCccccc--CcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCHH--HHHHHHHHh
Confidence 455777774 999999999999999999999999999999999831 144555544
No 397
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=88.44 E-value=0.34 Score=45.70 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=43.3
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHH
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEAC 129 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~ 129 (315)
+..||..|. ||.+.+.++|++.||+|+.||...++..|.+..|.. ....+++.+
T Consensus 176 ~~lpv~~l~--GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~~--~g~~l~~~a 229 (352)
T 1jx4_A 176 RELDIADVP--GIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEA--KAKYLISLA 229 (352)
T ss_dssp HHSBGGGST--TCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCHH--HHHHHHHHH
T ss_pred HhCCCCccc--ccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcChh--HHHHHHHHh
Confidence 455777775 999999999999999999999999999999999832 144455444
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.34 E-value=0.51 Score=40.12 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|.|.+|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 367889999999999999998764
No 399
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.31 E-value=0.22 Score=50.03 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=31.8
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCC--CCeEEEEeCCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT--GGKVIYVDSEN 216 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~--~~~vvyIDtE~ 216 (315)
+..|.++-|.|++|+|||+|+..++--. -|. .|.. ..++-|+.-+.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~--~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPT--EGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS-CCS--BCCCCCCCCEEEECSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC-CCC--CeEEEECceEEEEecCC
Confidence 3679999999999999999999876532 221 1211 34567777654
No 400
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.30 E-value=0.19 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
++.|.++-|.|++|||||+|+..++-
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999987764
No 401
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.27 E-value=0.13 Score=43.33 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.2
Q ss_pred hhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHH
Q psy13674 158 TELDKILGGGIESMAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 158 ~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla 192 (315)
..|+. + -+..|..+-|.|++|+|||+|...++
T Consensus 16 ~~l~~-~--~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-L--PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-S--SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-C--CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34554 3 46678899999999999999988765
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.26 E-value=0.27 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.0
Q ss_pred ccEEEEecCCCCChhhHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla 192 (315)
..++-|+|++|||||++|..|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999999998
No 403
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.17 E-value=0.24 Score=48.60 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHcc---CCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQ---LPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~---lp~~~~gg~~~~vvyIDtE 215 (315)
-..|+||||+|||.++..+|.... .|.. -.+..++++|..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~---l~~~~~~~l~~~ 245 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEI---LRDKRVMTLDMG 245 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTT---TSSCCEECC---
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChh---hcCCeEEEeeCC
Confidence 357999999999999999987752 2211 124556666654
No 404
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.12 E-value=0.63 Score=37.15 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4678999999999999997653
No 405
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.08 E-value=0.29 Score=45.07 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=25.5
Q ss_pred CChhHHHhhcCCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 156 GSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 156 G~~~LD~lL~GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
|++.|-..+ .|.++-|.|++|+|||+|...++-
T Consensus 159 gv~~lf~~l-----~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYL-----KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHH-----SSSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHh-----cCCeEEEECCCCCcHHHHHHHhcc
Confidence 455555554 468999999999999999887754
No 406
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.89 E-value=0.57 Score=35.75 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=54.7
Q ss_pred hccCCCccchhccccccccccccccccccchHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHH
Q psy13674 47 SSSQQSTGSVRTAAVEEEDEEDGEEFFQDVDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKI 125 (315)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki 125 (315)
--||-++..++.... ....-..+..|.. +||++....+|-+. |.+++++...++.+|.++.|+....+.+|
T Consensus 9 ~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 9 HHSQDPADLLMEKLE-------QDFVSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp ----CCSHHHHHHHH-------HHHHHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred ccccCCHHHHhhhcc-------CCHHHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 346677777766431 1112224567755 79999999988764 67899999999999999999999999999
Q ss_pred HHHHH
Q psy13674 126 KEACM 130 (315)
Q Consensus 126 ~~~~~ 130 (315)
++.+.
T Consensus 81 ~~~l~ 85 (91)
T 2a1j_B 81 FDVLH 85 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 407
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=87.80 E-value=0.72 Score=35.32 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=46.5
Q ss_pred cccccchHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHH-HHHHHHHH
Q psy13674 71 EFFQDVDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAK-VDKIKEAC 129 (315)
Q Consensus 71 ~~~~~i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~-v~ki~~~~ 129 (315)
--..|.+.|.. +||++..+.+|-+ .|.|+++|...+.++|++..| ... |++|.+.+
T Consensus 12 ~N~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vig--~~~~A~~I~~~l 69 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILG--NAANAKQLYDFI 69 (84)
T ss_dssp SCHHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHHS--CHHHHHHHHHHH
T ss_pred ccccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHhC--chHHHHHHHHHH
Confidence 45567888988 8999999999986 799999999999999999954 445 77776654
No 408
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.70 E-value=0.36 Score=50.79 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=29.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
....|+||+|+|||.+|..++.... +.+...++|++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~-------~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF-------DTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH-------SSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc-------CCCCcEEEEechh
Confidence 4678999999999999999987652 2356788888653
No 409
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.34 E-value=0.33 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.++-|.|.+|||||+++..++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999998764
No 410
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.30 E-value=0.42 Score=40.89 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=26.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEe
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVD 213 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyID 213 (315)
|.-..+-.|+|||+++..||...+. .+.+|+++|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~-------~G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKA-------AGYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHH-------TTCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEc
Confidence 3344456899999999999987652 467899998
No 411
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.16 E-value=1.2 Score=45.50 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=45.7
Q ss_pred hHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHh
Q psy13674 77 DILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKIC 133 (315)
Q Consensus 77 ~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~ 133 (315)
..|.+ +||+.....+|.++||+|++||. .++.+|.+++| +..+.++++.+.+.+
T Consensus 657 ~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~--~~~~~~i~~~~~~~~ 711 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLG--QKLGEKVVQEAARLL 711 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhC--hhHHHHHHHHHHHhh
Confidence 33444 69999999999999999999999 99999999998 777888888766544
No 412
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.11 E-value=0.28 Score=50.11 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCC--CCeEEEEeCCC
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT--GGKVIYVDSEN 216 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~--~~~vvyIDtE~ 216 (315)
+..|.++-|.|++|+|||+|...++--. -|. .|.. ..++-|+.-+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~--~G~I~~~~~i~~v~Q~~ 426 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPT--EGKVEWDLTVAYKPQYI 426 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS-CCS--BSCCCCCCCEEEECSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC-CCC--ceEEEEeeEEEEEecCc
Confidence 4679999999999999999999876532 222 1221 34567777653
No 413
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=87.11 E-value=0.82 Score=45.11 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred eecCChhHHHhhcC---CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 153 ITTGSTELDKILGG---GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 153 isTG~~~LD~lL~G---Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
+..--+.|+.+|.. +=.+-.+.-|+|++++|||+|.-++.-
T Consensus 46 l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 46 FELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 33444667777753 112456788999999999999998864
No 414
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.09 E-value=0.28 Score=43.50 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=30.0
Q ss_pred cEEEEe-cCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 172 AITEAF-GEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 172 ~ItEi~-G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.++-++ +-.|+|||+++..+|...+. .+.+|++||...
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~-------~g~~VlliD~D~ 45 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLAR-------LGKRVLLVDLDP 45 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHH-------TTCCEEEEECCT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHH-------CCCCEEEEECCC
Confidence 455554 67899999999999987652 468999999874
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.06 E-value=0.35 Score=41.90 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
..++-|+|.+|||||+++..|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457789999999999999999864
No 416
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.96 E-value=0.33 Score=40.75 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.5
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
+-|.|++|+|||+|...++-.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 568999999999999998764
No 417
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.92 E-value=0.35 Score=38.49 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|+..++-..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999997653
No 418
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.79 E-value=0.43 Score=43.13 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
|.-..+-.|+|||+++..||...+. .+.+|+.||...
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~-------~G~~VlliD~D~ 43 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLY-------GGAKVAVIDLDL 43 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHH-------TTCCEEEEECCT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 3344567899999999999987652 467999999885
No 419
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.78 E-value=2 Score=37.04 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=18.8
Q ss_pred cchHHhhCCCCHHHHHHHHhCCCCc
Q psy13674 75 DVDILQNYNINVADIKKLKSVGLCT 99 (315)
Q Consensus 75 ~i~~L~~~gl~~~~i~kL~~aGi~T 99 (315)
+...+++.++++..++.|++.||..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~ 46 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFER 46 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCS
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCC
Confidence 4445666789999999999999864
No 420
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.63 E-value=0.37 Score=38.16 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.3
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|+..++-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999764
No 421
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=86.62 E-value=0.67 Score=39.83 Aligned_cols=66 Identities=9% Similarity=-0.103 Sum_probs=27.8
Q ss_pred ccceecCChhHHHhh-cCCCCcccEEEEec-CCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCCCCh
Q psy13674 150 VFKITTGSTELDKIL-GGGIESMAITEAFG-EFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220 (315)
Q Consensus 150 ~~~isTG~~~LD~lL-~GGl~~g~ItEi~G-~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~F~~ 220 (315)
...++.|.+.+|.-+ +||++.|.++|+.. .+|.|=..|.+-+..... .+..++.++||..-.....
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~-----~~~~~r~vlwI~Pp~~l~~ 89 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELS-----EEQDARWLTLIAPPASLTH 89 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHH-----TCSSSSEEEEESCCTTSCH
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhc-----ccccCccEEEECCCCCCCH
Confidence 366899999999988 68999999999974 577776655554444321 0114567788876654333
No 422
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.59 E-value=0.34 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.4
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
...++.|.||||+|||....++....
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999888776654
No 423
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.58 E-value=0.52 Score=38.58 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
..-+.|++|+|||+|...++-.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999763
No 424
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.57 E-value=0.37 Score=40.43 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
.+-|.|++|+|||+|...++-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5679999999999999998764
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.57 E-value=0.41 Score=40.85 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|.+|+|||+|+.+++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 56788999999999999998764
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.54 E-value=0.41 Score=42.14 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=23.2
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|.++-|.|++|+|||+++..++...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987764
No 427
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.50 E-value=1.4 Score=38.43 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=26.3
Q ss_pred cccccccchHHhhCCCCHHHHHHHHhCCCCch
Q psy13674 69 GEEFFQDVDILQNYNINVADIKKLKSVGLCTI 100 (315)
Q Consensus 69 ~~~~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv 100 (315)
....+.|+..+.+.++++..++.|.+.||.+.
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~ 52 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQNFTEP 52 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSC
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 34467788888889999999999999998653
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.49 E-value=0.2 Score=42.82 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=25.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.++-|+|++|||||+|+..++.... | . +.....+.+|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~---~-g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-E---R-GLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-H---T-TCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-h---c-CCceEEEEEcCc
Confidence 4678999999999999998876543 1 1 223466776654
No 429
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=86.48 E-value=0.26 Score=36.59 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHH
Q psy13674 82 YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEAC 129 (315)
Q Consensus 82 ~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~ 129 (315)
+||.+...++|-+. |.+++++...++.+|.++.|+.+..+..|+...
T Consensus 30 ~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 30 EGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp TTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 59999998888775 778999999999999999999999999887654
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.41 E-value=0.34 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+..|.++-|.|++|+|||+|..-++-
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 468999999999999999999987754
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.36 E-value=0.31 Score=40.40 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.6
Q ss_pred EEEecCCCCChhhHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~ 193 (315)
+-|.|++|+|||+|...++-
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46899999999999998865
No 432
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.34 E-value=0.46 Score=41.97 Aligned_cols=38 Identities=24% Similarity=0.090 Sum_probs=30.6
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
...+.+++.+|.|||+.|+-++..+. +.+.+|+++-.-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-------g~G~rV~~vQF~ 65 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-------GHGKNVGVVQFI 65 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-------HTTCCEEEEESS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-------HCCCeEEEEEee
Confidence 34677888889999999999999875 567889988533
No 433
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.33 E-value=0.95 Score=32.54 Aligned_cols=52 Identities=12% Similarity=0.266 Sum_probs=44.7
Q ss_pred HHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy13674 78 ILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACM 130 (315)
Q Consensus 78 ~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~ 130 (315)
.|.. +|+++....+|-+ .|.++.+|...++.+|.++.|+....+..|.....
T Consensus 15 ~L~~i~giG~~~a~~Ll~-~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLK-HFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHTTSTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHH-HcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4554 7999999998887 57889999999999999999999999999877654
No 434
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=86.29 E-value=0.55 Score=47.05 Aligned_cols=43 Identities=28% Similarity=0.173 Sum_probs=39.3
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhC
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKG 116 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~g 116 (315)
+..||..|. ||.+.+.++|++.||+|+.||...++..|.+.+|
T Consensus 313 ~~LPV~~l~--GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG 355 (504)
T 3gqc_A 313 RGQLVTNLP--GVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG 355 (504)
T ss_dssp HHSBGGGST--TCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC
T ss_pred hcCChhHhh--CcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhC
Confidence 456777776 9999999999999999999999999999999988
No 435
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.27 E-value=0.41 Score=48.99 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=23.0
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
+..|.++-|.||+|+|||+|..-++-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc
Confidence 56899999999999999999887654
No 436
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.21 E-value=0.4 Score=37.88 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++...
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999987653
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.17 E-value=0.42 Score=43.01 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=23.3
Q ss_pred hcCCCCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 164 LGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 164 L~GGl~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
+.+.-..|.++-|.|++|+|||+++..++...
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33455567899999999999999999987654
No 438
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.15 E-value=0.42 Score=46.81 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|+||+|+|||+|+..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999999998753
No 439
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.14 E-value=0.41 Score=37.87 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.7
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++..-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999997653
No 440
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.07 E-value=0.4 Score=37.77 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=18.9
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 5689999999999999997653
No 441
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.06 E-value=0.42 Score=50.28 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=28.1
Q ss_pred EEEecCCCCChhhHHHHHHHHcc---CCccccCCCCCeEEEEeCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ---LPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~---lp~~~~gg~~~~vvyIDtE~ 216 (315)
..|+|+||+|||+++..+|.... .|.. -.+..++|+|...
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~~~~p~~---l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEG---LKGKRIVSLQMGS 236 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHTCSCTT---STTCEEEEECC--
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCCCchh---hcCCeEEEeehHH
Confidence 57899999999999999987652 1211 1256788888654
No 442
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.00 E-value=1.4 Score=37.92 Aligned_cols=26 Identities=8% Similarity=0.295 Sum_probs=20.3
Q ss_pred cchHHhhCCCCHHHHHHHHhCCCCch
Q psy13674 75 DVDILQNYNINVADIKKLKSVGLCTI 100 (315)
Q Consensus 75 ~i~~L~~~gl~~~~i~kL~~aGi~Tv 100 (315)
++......++++..++.|++.||...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~ 48 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLV 48 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 44556677899999999999888653
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.00 E-value=0.43 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=20.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|.-+.|.|++|+|||++|+.+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 556789999999999999999764
No 444
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.00 E-value=0.39 Score=41.07 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.++-|.|++|||||+++..++...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999887653
No 445
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.96 E-value=0.62 Score=47.95 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=26.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
-..|+||||+|||.+|..++... +...++||..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s 522 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMS 522 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEech
Confidence 57899999999999999988753 3467778754
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.89 E-value=0.37 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
...|.++-|.||+|+|||+|..-++-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 34699999999999999999887754
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.85 E-value=0.43 Score=38.82 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~ 194 (315)
.+-+.|++|+|||+|...++-.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999753
No 448
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.81 E-value=1.1 Score=45.32 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=35.0
Q ss_pred hHHHhhcCCCC----cccEEEEecCCCCChhhHHHHHHHHccCCccccCCCC-CeEEEEeCC
Q psy13674 159 ELDKILGGGIE----SMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTG-GKVIYVDSE 215 (315)
Q Consensus 159 ~LD~lL~GGl~----~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~-~~vvyIDtE 215 (315)
.+.+.+.-..+ .+.++-|.|.+|||||+++..|+.... ..+ ..++++|.+
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~-------~~G~~~~~~lD~D 434 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN-------QQGGRSVSLLLGD 434 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH-------HHCSSCEEEEEHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc-------ccCCceEEEECcH
Confidence 45555554443 467899999999999999999987642 112 457787754
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.64 E-value=0.4 Score=43.24 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHHHHHcc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQ 196 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~ 196 (315)
.-|.|+||||||++|..|+...-
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999987653
No 450
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.63 E-value=0.33 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-..|+||||+|||+||..++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 57899999999999999887543
No 451
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.62 E-value=0.3 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.1
Q ss_pred CCCcccEEEEecCCCCChhhHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHT 190 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalq 190 (315)
-++.|+++-|.|++|||||+|...
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTT
T ss_pred EecCCCEEEEEeeCCCCHHHHHHH
Confidence 467899999999999999999853
No 452
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.46 E-value=0.46 Score=38.02 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.8
Q ss_pred EEEecCCCCChhhHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla 192 (315)
.-+.|++|+|||+|...++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4579999999999999885
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.42 E-value=0.38 Score=49.21 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 166 GGIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 166 GGl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
|-+..|.|+-|.|++|+|||+|...++-
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHT
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhc
Confidence 4566779999999999999999987764
No 454
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.42 E-value=0.46 Score=38.16 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++-.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 468999999999999988643
No 455
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.34 E-value=0.46 Score=38.30 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+-+.|++|+|||+|...++-..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 5689999999999999987643
No 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.30 E-value=0.42 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
-..|+||||+|||.+|..+|...
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998764
No 457
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=85.27 E-value=1.7 Score=38.48 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=47.2
Q ss_pred ccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHhHh
Q psy13674 74 QDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKIC 133 (315)
Q Consensus 74 ~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~gis~~~v~ki~~~~~~~~ 133 (315)
-||..| .|+.....+|-++||-.+++|+..+| .+.+.+||+...+.+|++.+.+++
T Consensus 141 ~pi~~l---~~~~~e~~~l~~~~~v~~k~~~~~~~-~~l~~~gi~~~~~~~i~~~~~~l~ 196 (199)
T 1y88_A 141 YPITIL---RIDKEVLDELVRAGLVFCRDVVSAGE-EKLREIGLSAKKAREVIAEAKKVI 196 (199)
T ss_dssp CBGGGS---SCCHHHHHHHHHTTCCBHHHHHHHCH-HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEE---eeCHHHHhhhhcCCcEEEehhhhcCh-HHHHHcCCcHHHHHHHHHHHHHHh
Confidence 345555 68889999999999999999999885 455559999999999999988776
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.18 E-value=0.26 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.7
Q ss_pred cccEEEEecCCCCChhhHHHHHHHH
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.+.++-|.|.+|||||+++..|+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578899999999999999888754
No 459
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.09 E-value=0.5 Score=37.57 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999997654
No 460
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.95 E-value=0.44 Score=44.15 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
.++-|.|+.|+|||+|...++-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58899999999999999988754
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.90 E-value=0.44 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+++|+.+-|+|++|||||+|..-+..
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhc
Confidence 467899999999999999999987754
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.89 E-value=0.49 Score=37.72 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=18.1
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999998754
No 463
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=84.87 E-value=0.34 Score=45.75 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~~ 217 (315)
|.-..+-.|+|||+++.++|...+. .+.+|+.||....
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~-------~G~rVLlID~D~q 41 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFAL-------QGKRVLYVDCDPQ 41 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHH-------TTCCEEEEECCTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh-------CCCcEEEEEcCCC
Confidence 3444577899999999999987652 5789999998844
No 464
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.86 E-value=0.51 Score=37.57 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999754
No 465
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.81 E-value=2 Score=36.69 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=27.2
Q ss_pred ccccccccccchHHhh-CCCCHHHHHHHHhCCCCc
Q psy13674 66 EEDGEEFFQDVDILQN-YNINVADIKKLKSVGLCT 99 (315)
Q Consensus 66 ~~~~~~~~~~i~~L~~-~gl~~~~i~kL~~aGi~T 99 (315)
..+....+.|+...++ .++++..++.|.+.||.+
T Consensus 8 ~~~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~ 42 (228)
T 3iuy_A 8 SGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILK 42 (228)
T ss_dssp SSSCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCS
T ss_pred CCccCcCCCChhhHhhhhccCHHHHHHHHHCCCCC
Confidence 3455567778888888 799999999999989865
No 466
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.79 E-value=0.56 Score=43.36 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.0
Q ss_pred CcccEEEEecCCCCChhhHHHHHHH
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
.+| ++-|+|++|+|||+|.--++.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHH
Confidence 455 999999999999999776653
No 467
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=84.69 E-value=0.39 Score=45.77 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=38.5
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHHHHhC
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKG 116 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~~~~g 116 (315)
+..||..|. ||.+.+.++|++.||+|+.||...++..|.+..|
T Consensus 177 ~~lpv~~l~--GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG 219 (362)
T 4f4y_A 177 NELDIDEIP--GIGSVLARRLNELGIQKLRDILSKNYNELEKITG 219 (362)
T ss_dssp HTCBSTTST--TCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHC
T ss_pred HhCChhhcc--CCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhC
Confidence 455777666 9999999999999999999999999999999888
No 468
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.63 E-value=0.53 Score=37.43 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=28.8
Q ss_pred EEEecCCCCChhhHHHHHHHHccC---Ccc-c----cCCCCCeEEEEeCCCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQL---PDE-T----RGYTGGKVIYVDSENT 217 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~l---p~~-~----~gg~~~~vvyIDtE~~ 217 (315)
.-+.|++|+|||+|...++-..-. |.. + ....+..+.++||-|.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 54 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCC
Confidence 357999999999999999765321 100 0 1123456778888874
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.63 E-value=0.51 Score=38.91 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHc
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
--.-+.|++|+|||+|...++-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999997653
No 470
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.60 E-value=0.54 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.3
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999764
No 471
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.51 E-value=0.54 Score=37.45 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++-..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5678999999999999997653
No 472
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.49 E-value=0.51 Score=45.42 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
+-|.|++|+|||+++..+|..
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 778999999999999877654
No 473
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.48 E-value=0.55 Score=37.30 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=18.2
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++..
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999764
No 474
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.44 E-value=0.54 Score=37.91 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.3
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999754
No 475
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.42 E-value=0.52 Score=39.84 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCc--cc-----cCCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPD--ET-----RGYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~--~~-----~gg~~~~vvyIDtE~~ 217 (315)
-.-+.|++|+|||+|...++.....+. .+ .......+.++||-|.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH 65 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCc
Confidence 356899999999999999986542210 00 0001235667888764
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.42 E-value=0.52 Score=42.11 Aligned_cols=27 Identities=15% Similarity=-0.097 Sum_probs=20.8
Q ss_pred CcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 169 ESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 169 ~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
..|.++-|.|++|+|||+++..++...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987654
No 477
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.37 E-value=0.47 Score=52.57 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+++|+.+-|+|++|||||+|+.-+.-
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 468899999999999999999986654
No 478
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=84.35 E-value=0.55 Score=37.91 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 458899999999999998754
No 479
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.33 E-value=0.62 Score=38.43 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.2
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~ 193 (315)
.++-|+|+.|+|||++.-.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999655543
No 480
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.24 E-value=1.7 Score=36.21 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=25.5
Q ss_pred EEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
..+.+++|+|||..++-.+........ ..+.+.+++|+.-.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQ-ERGRKPRALVLTPT 81 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCC-CTTCCCSEEEECSS
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCcEEEEECC
Confidence 678899999999775555544432211 11245678887643
No 481
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=84.23 E-value=0.76 Score=42.88 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=34.8
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCCC
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSEN 216 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE~ 216 (315)
.+..-.|+-|+|=-|+|||+.+.+||+..+. .+.+|+-||..-
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~-------~GkkVllID~Dp 86 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSI-------LGKRVLQIGCDP 86 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEESS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHH-------CCCeEEEEecCC
Confidence 4455679999999999999999999988652 678999999883
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.03 E-value=0.6 Score=46.56 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=22.9
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
++. .++-|.|++|||||+|..-++--.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 566 899999999999999998776543
No 483
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.02 E-value=0.56 Score=37.71 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|++|+|||+|...++..
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999754
No 484
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.00 E-value=0.57 Score=38.50 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+-++|.+|+|||+|+..++...
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999998653
No 485
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.99 E-value=0.45 Score=52.57 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.6
Q ss_pred CCCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
-+++|+++-|+|++|||||+|+.-++-
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999886654
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.99 E-value=0.55 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHc
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.+-|.|++|+|||+|...++-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999988887543
No 487
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=83.94 E-value=0.59 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
.-+.|++|+|||+|...++-..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5678999999999999997653
No 488
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.85 E-value=0.6 Score=37.29 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=28.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHccCCcc-cc-------CCCCCeEEEEeCCCC
Q psy13674 173 ITEAFGEFRTGKTQLSHTLSITAQLPDE-TR-------GYTGGKVIYVDSENT 217 (315)
Q Consensus 173 ItEi~G~~GsGKTqLalqla~~~~lp~~-~~-------gg~~~~vvyIDtE~~ 217 (315)
-.-+.|++|+|||+|...++.....+.. .. ...+..+.++||-+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~ 61 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCC
Confidence 3678999999999999999754321100 00 011355677888764
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=83.81 E-value=0.54 Score=37.48 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.7
Q ss_pred EEEecCCCCChhhHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLS 192 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla 192 (315)
.-+.|++|+|||+|...++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 4579999999999999885
No 490
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=83.75 E-value=0.6 Score=37.96 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.3
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
+-|.|++|+|||+|...++-.
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999754
No 491
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=83.75 E-value=0.63 Score=36.39 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=31.5
Q ss_pred chHHhh-CCCCHHHHHHHHhCCCCchHHHhcCCHHHH
Q psy13674 76 VDILQN-YNINVADIKKLKSVGLCTIKGVQMTTRRKM 111 (315)
Q Consensus 76 i~~L~~-~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L 111 (315)
+..|.. ++|++..-..|.++||+|+++|....+.++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHH
Confidence 455667 799999999999999999999998887766
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=83.71 E-value=0.65 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy13674 171 MAITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 171 g~ItEi~G~~GsGKTqLalqla~~ 194 (315)
|.-+-|.|++|+|||+|...++-.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445679999999999999999754
No 493
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=83.67 E-value=0.44 Score=42.41 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=25.4
Q ss_pred ccccchHHhhCCCCHHHHHHHHhCCCCchHHHhcCCHHHHH
Q psy13674 72 FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMS 112 (315)
Q Consensus 72 ~~~~i~~L~~~gl~~~~i~kL~~aGi~Tv~dll~~~~~~L~ 112 (315)
+..||..|. ||.+.+.++|++.||+|+.||...++..|.
T Consensus 182 ~~lpv~~l~--giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 182 NELDIDEIP--GIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp HTCBGGGST--TCCHHHHHHHHHTTCCBTTC----------
T ss_pred HhCCccccc--CCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 455777774 999999999999999999999999887764
No 494
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=83.60 E-value=0.59 Score=37.64 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.6
Q ss_pred EEEecCCCCChhhHHHHHHHH
Q psy13674 174 TEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~ 194 (315)
.-+.|.+|+|||+|...++-.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 568999999999999999765
No 495
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.59 E-value=0.67 Score=44.52 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCcccEEEEecCCCCChhhHHHHHHH
Q psy13674 168 IESMAITEAFGEFRTGKTQLSHTLSI 193 (315)
Q Consensus 168 l~~g~ItEi~G~~GsGKTqLalqla~ 193 (315)
+..+.++-|.|++|+|||+|.-.++.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999999776654
No 496
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.57 E-value=0.62 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.9
Q ss_pred EEEecCCCCChhhHHHHHHHHc
Q psy13674 174 TEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 174 tEi~G~~GsGKTqLalqla~~~ 195 (315)
+-+.|++|+|||+|...++...
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 5689999999999999998653
No 497
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.29 E-value=0.68 Score=41.04 Aligned_cols=26 Identities=27% Similarity=0.097 Sum_probs=23.3
Q ss_pred cccEEEEecCCCCChhhHHHHHHHHc
Q psy13674 170 SMAITEAFGEFRTGKTQLSHTLSITA 195 (315)
Q Consensus 170 ~g~ItEi~G~~GsGKTqLalqla~~~ 195 (315)
.|.++-|.|++|+|||+++..++...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998764
No 498
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.29 E-value=1.6 Score=39.67 Aligned_cols=40 Identities=20% Similarity=0.074 Sum_probs=27.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHccCCccccCCCCCeEEEEeCC
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSE 215 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~~~lp~~~~gg~~~~vvyIDtE 215 (315)
.-..+.+|.|+|||..++..+.....+ ...+.+++|+.-.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~lil~P~ 84 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNP----EDASPQAICLAPS 84 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCT----TCCSCCEEEECSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcc----CCCCccEEEECCC
Confidence 456789999999998776666554432 1245678887643
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.28 E-value=0.42 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.3
Q ss_pred CCCcccEEEEecCCCCChhhHH
Q psy13674 167 GIESMAITEAFGEFRTGKTQLS 188 (315)
Q Consensus 167 Gl~~g~ItEi~G~~GsGKTqLa 188 (315)
-++.|.++-|.||+|||||+|.
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 5688999999999999999995
No 500
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.24 E-value=0.65 Score=37.46 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy13674 172 AITEAFGEFRTGKTQLSHTLSIT 194 (315)
Q Consensus 172 ~ItEi~G~~GsGKTqLalqla~~ 194 (315)
--.-+.|++|+|||+|...++-.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999754
Done!