RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13674
(315 letters)
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 181 bits (460), Expect = 6e-55
Identities = 112/202 (55%), Positives = 140/202 (69%), Gaps = 9/202 (4%)
Query: 57 RTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKG 116
+ A E +++ E FQD+D+LQ + INVADIKKLKSVG+CTIKG+QMTTRR + +KG
Sbjct: 8 QVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKG 67
Query: 117 FSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEA 176
SEAKVDKIKEA K+ + FLTA + EKRK VF ITTGS E DK+LGGGIESMAITEA
Sbjct: 68 LSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEA 127
Query: 177 FGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGS 236
FGEFRTGKTQLSHTL +TAQLP GY GGK+I++D+ENT P + IA
Sbjct: 128 FGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTENTFRPDR-LRDIA-------D 178
Query: 237 RLPMSFHITREDLIVFFPLNAD 258
R + ++++ ++
Sbjct: 179 RFNVDHDAVLDNVLYARAYTSE 200
Score = 106 bits (267), Expect = 9e-27
Identities = 50/70 (71%), Positives = 55/70 (78%)
Query: 246 REDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAI 305
D ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA FAI
Sbjct: 274 TADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAI 333
Query: 306 TNGGIADAKD 315
T GGI DAK+
Sbjct: 334 TAGGIGDAKE 343
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 180 bits (459), Expect = 6e-55
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 4/185 (2%)
Query: 64 EDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVD 123
+E + ++ + ++ L I+ I KL G +++ + + + + +S G +
Sbjct: 2 SNEVEQKKNIKTINDLPG--ISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQ 59
Query: 124 KIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTG 183
KI + D F TA +V ++R V KI+TGS LD +L GGIE+ +TE FGEF +G
Sbjct: 60 KIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSG 119
Query: 184 KTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFH 243
KTQL H LS+ QLP E +G GK +Y+D+E T I +A + L + + +
Sbjct: 120 KTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWER-IENMAKALGLDIDNVMNNIY 177
Query: 244 ITRED 248
R
Sbjct: 178 YIRAI 182
Score = 104 bits (260), Expect = 7e-26
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 256 NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAKD 315
DP VGG+ + H RI L+K RG RIA++ D+P +PE E +FA+T GI DA++
Sbjct: 265 YGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAEE 324
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 181 bits (459), Expect = 3e-54
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 6 MQKKMSQIVDENNNNLSQMSLVQQQPS------------QGRASSQQSVHQARSSSQQST 53
M + Q + E+ SL+ P+ + + Q
Sbjct: 1 MSQVQEQHISESQLQYGNGSLMSTVPADLSQSVVDGNGNGSSEDIEATNGSGDGGGLQEQ 60
Query: 54 GSVRTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQ 113
+ +E +E F ++ LQ I +AD+KKL+ GL T + V R+ + +
Sbjct: 61 AEAQGEMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLE 120
Query: 114 IKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAI 173
IKG SEAK DK+ ++ F+TAA +R ++ +TTGS LD +LGGG+E+ +I
Sbjct: 121 IKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSI 180
Query: 174 TEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
TE FGEFRTGK+QL HTL++T Q+P + G GK +Y+D+E T P
Sbjct: 181 TELFGEFRTGKSQLCHTLAVTCQIPLDI-GGGEGKCLYIDTEGTFRP 226
Score = 88.6 bits (219), Expect = 5e-20
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 255 LNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADAK 314
N DPKKP+GGNIMA++STTR+ +KG+G R+ K+ DSP +PEAE +FAI G+ D +
Sbjct: 337 FNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396
Query: 315 D 315
+
Sbjct: 397 E 397
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 165 bits (420), Expect = 6e-49
Identities = 62/163 (38%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Query: 59 AAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFS 118
A E ++ E+ + ++ L + A +KL+ G T++ + + + ++ ++ G S
Sbjct: 20 ATEETPKKKKKEKIIRSIEDLPG--VGPATAEKLREAGYDTLEAIAVASPIELKEVAGIS 77
Query: 119 EAKVDKIKEACMKICD-NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAF 177
E KI +A K + +F+ A + ++KR + +I+TGS LDK+LGGGIE+ AITE F
Sbjct: 78 EGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVF 137
Query: 178 GEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
GEF +GKTQL+HTL++ QLP E G G VI++D+ENT P
Sbjct: 138 GEFGSGKTQLAHTLAVMVQLPPE-EGGLNGSVIWIDTENTFRP 179
Score = 83.5 bits (206), Expect = 2e-18
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 256 NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
DP +P+GG+I+AH++T R+ LRKG+G RIA++ D+P +PE EA+F+IT GI D
Sbjct: 293 FGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP
complex, calcium stimulation, RECA, DMC1; HET: DNA ANP;
1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11
PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A*
3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A*
3etl_A* 4dc9_A* 2gdj_A*
Length = 322
Score = 149 bits (377), Expect = 7e-43
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 77 DILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNS 136
++ + + +KL G + T +++ I+G SE K+ +CD
Sbjct: 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLG 63
Query: 137 FLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196
F + ++++R V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q
Sbjct: 64 FKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123
Query: 197 LPDE---------TRGYTGGKVIYVDSENTLYP 220
P+ K +Y+D+E T P
Sbjct: 124 NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156
Score = 81.6 bits (201), Expect = 7e-18
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 256 NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 266 FGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 322
>1b22_A DNA repair protein RAD51; DNA binding, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; HET: DNA; NMR {Homo
sapiens} SCOP: a.60.4.1
Length = 114
Score = 114 bits (287), Expect = 4e-32
Identities = 38/110 (34%), Positives = 60/110 (54%)
Query: 55 SVRTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQI 114
++ A + E+ Q + L+ IN D+KKL+ G T++ V ++++ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 115 KGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKIL 164
KG SEAK DKI K+ F TA + ++R ++ +ITTGS ELDK+L
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLL 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous
recombination, breast cancer susceptibility, RECA-like
ATPase, protein complex; HET: DNA MSE; 1.70A {Homo
sapiens} SCOP: c.37.1.11
Length = 243
Score = 102 bits (255), Expect = 7e-26
Identities = 47/62 (75%), Positives = 52/62 (83%)
Query: 254 PLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIADA 313
ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEAMFAI G+ DA
Sbjct: 182 MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 241
Query: 314 KD 315
KD
Sbjct: 242 KD 243
Score = 99.9 bits (249), Expect = 5e-25
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+ HTL++T QLP + RG GK
Sbjct: 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPID-RGGGEGK 60
Query: 209 VIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITR 246
+Y+D+E T P ++A+A L GS + + R
Sbjct: 61 AMYIDTEGTFRPER-LLAVAERYGLSGSDVLDNVAYAR 97
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 93.0 bits (232), Expect = 9e-23
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYV 212
++TG+ LD +LGGG +T+ +G + +GKT L+ + + KV YV
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSG----------KKVAYV 51
Query: 213 DSENTLYPLLNIIAIASLVTLVGSRLPMSFHITRE 247
D+E P ++ +A L F +
Sbjct: 52 DTEGGFSP-ERLVQMAETRGLNPEEALSRFILFTP 85
Score = 85.3 bits (212), Expect = 7e-20
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 251 VFFPLNADPKKPVGGNIMAHASTTRISLRK-GRGETRIAKIYDSPDMPEAE-AMFAITNG 308
V F + KPV + + + L K + R+A + PE A F IT
Sbjct: 155 VHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITER 214
Query: 309 GIADAK 314
GI D +
Sbjct: 215 GIEDVE 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 38/300 (12%), Positives = 85/300 (28%), Gaps = 65/300 (21%)
Query: 13 IVDENNNNLSQMSLVQQQPSQGRASSQQSV-HQARSS-SQQSTGSVRTAAVEEEDEEDGE 70
+ + + + ++L + Q + +Q + + +S S + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 71 EFFQDVDILQNYNI------NVADIKKLKSVGL-CTIKGVQMTTRRKMSQIKGFSEAKVD 123
+ + Y NV + K + L C I +TTR K Q+
Sbjct: 236 RLLKS----KPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFK--QV--TDFLSAA 284
Query: 124 KIKEACMKICDNSFLTA------AQVVEKRKQVFK--ITTGSTELDKILGGGIESMAITE 175
+ + + ++ R Q + T + I+ I T
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT- 343
Query: 176 AFGEFRT-GKTQLSHTL--SITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVT 232
+ ++ +L+ + S+ P E R + +++
Sbjct: 344 -WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDR-----------LSV----- 380
Query: 233 LVGSRLPMSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYD 292
P S HI L + + D K ++ + SL + + + I
Sbjct: 381 -----FPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLH--KYSLVEKQPKESTISIPS 430
Score = 46.0 bits (108), Expect = 1e-05
Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 70/276 (25%)
Query: 61 VEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEA 120
+ + EE ++F ++V NY ++ IK + M TR + Q
Sbjct: 71 LLSKQEEMVQKFVEEVL-RINYKFLMSPIKT-------EQRQPSMMTRMYIEQ------- 115
Query: 121 KVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEF 180
D++ DN V + + K+ EL I+ + G
Sbjct: 116 -RDRLYN------DNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVL-----G-- 160
Query: 181 RTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLV------ 234
+GKT +++ L + + K+ +++ +N P + + L+ +
Sbjct: 161 -SGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 235 ----GSRLPMSFHITREDLIVFFPL----NA--------DPK--KPVGGN--IMAHASTT 274
S + + H + +L N + K + I+ TT
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---TT 272
Query: 275 R----ISLRKGRGETRIAKIYDSPDM--PEAEAMFA 304
R T I+ + S + E +++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Score = 41.4 bits (96), Expect = 3e-04
Identities = 39/346 (11%), Positives = 96/346 (27%), Gaps = 110/346 (31%)
Query: 1 MSQIMMQKKMSQIVDENNNNLSQ----MSLVQQQPSQGRASSQQSVHQARSS---SQQST 53
I+ ++++ I+ + +S + + + + V + S T
Sbjct: 42 PKSILSKEEIDHIIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 54 GSVRTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQ 113
+ + + E + + D + YN+ +R +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----------------------SRLQ--- 135
Query: 114 IKGFSEAKVDKIKEACMKICDNSFLT------------AAQVVEKRK-------QVFKIT 154
K+++A +++ + A V K ++F +
Sbjct: 136 -------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 155 TGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYVDS 214
+ + + +E + +L + + P+ T I +
Sbjct: 189 LKNCNSPETV---LEML-------------QKLLYQID-----PNWTSRSDHSSNIKLRI 227
Query: 215 ENTLYPLLNIIAIA----SLVTL-------------VGSRLPMSFHITREDLIVFFPLNA 257
+ L ++ L+ L + ++ + TR V L+A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---TTR-FKQVTDFLSA 283
Query: 258 DPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSP--DMPEAEA 301
+ + H S T L ++ + K D D+P E
Sbjct: 284 ATTTHI---SLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPR-EV 322
Score = 36.4 bits (83), Expect = 0.012
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 28/118 (23%)
Query: 143 VVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQ-----LSHTLS----- 192
V + K + E+D I+ F + + + + L
Sbjct: 38 VQDMPKSILS----KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 193 ITAQLPDETRGYTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITREDLI 250
+ + + E R + +Y++ + LY N ++++R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLY---N----------DNQVFA-KYNVSRLQPY 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 7e-04
Identities = 54/358 (15%), Positives = 121/358 (33%), Gaps = 106/358 (29%)
Query: 33 QGRASSQQSVHQARSSS---QQSTGSVRTAAVEEEDEEDG-----EEFFQDVDILQN--- 81
R +++ + +S+ G+ + A+ G +++F++ L++
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDDYFEE---LRDLYQ 178
Query: 82 -YNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIK--EACMKICDNSFL 138
Y++ V D+ K + L + R + K F++ ++ ++ E D +L
Sbjct: 179 TYHVLVGDLIKFSAETLSEL------IRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYL 231
Query: 139 TAAQV--------------VEKRK------QVFKITTGSTELDK-ILGGGIESMAIT-EA 176
+ + V + ++ G+T + ++ + + E+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 177 FGE---------FRTG-KTQLSH-TLSITAQLPDETRGYTGGKVIYVDSENTLYPLLNII 225
F F G + ++ S+ + +++ E P+L+I
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENN-------EGVPSPMLSIS 342
Query: 226 -----AIASLVTLVGSRLPMSFHI------TREDLIVF-FP-----LNA---DPKKPVGG 265
+ V S LP + ++L+V P LN K P G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 266 NIMAHASTTRI--SLRKGRGETR---IAKIYDSPDMPEAEAMFA--ITNGGIA-DAKD 315
+ +RI S RK + R +A + S + A + + ++ +AKD
Sbjct: 403 D------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Score = 31.9 bits (72), Expect = 0.29
Identities = 44/281 (15%), Positives = 81/281 (28%), Gaps = 97/281 (34%)
Query: 11 SQIVDENNNNLSQMSLVQQQPSQGRASSQQSVHQARSSSQQSTGSVRTAAVEEEDEEDGE 70
IV N NL+ + +G+ + + A G ++T + +E E
Sbjct: 1662 LDIVINNPVNLT----IHFGGEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 71 E--FFQDVDIL---QN-----YNINVADIKKLK--------------SVG----LCTIKG 102
F + +L Q + A + LK S+G L ++
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 103 VQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKR-----KQVFKITTGS 157
V MS +VV R V + G
Sbjct: 1776 V-------MS----IESL--------------------VEVVFYRGMTMQVAVPRDELGR 1804
Query: 158 TELDKILGGGIESMAIT---EAFGEF------RTGKTQLSHTLSITA--QLPDETRGY-T 205
+ ++ +A + EA RTG + I + ++ Y
Sbjct: 1805 SNYG-MIAINPGRVAASFSQEALQYVVERVGKRTGW-----LVEI-VNYNVENQQ--YVA 1855
Query: 206 GGKVIYVDSENTLYPLLNIIAIASLVTLVGSRLPMSFHITR 246
G + +D T+ +LN I + + ++ L S +
Sbjct: 1856 AGDLRALD---TVTNVLNFIKLQK-IDII--ELQKSLSLEE 1890
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 36.2 bits (84), Expect = 0.016
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 7 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 61
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 62 --GKTCAFIDAEHALDP 76
Score = 35.8 bits (83), Expect = 0.021
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 89 IKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVV---E 145
+++L + G + + + K A + + F + + +
Sbjct: 996 VRELLLSNPNSTTGSTGSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGED 1055
Query: 146 KRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGY 204
+ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 1056 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE---- 1109
Query: 205 TGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 1110 -GKTCAFIDAEHALDP 1124
Score = 35.4 bits (82), Expect = 0.028
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 356 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 410
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 411 --GKTCAFIDAEHALDP 425
Score = 35.4 bits (82), Expect = 0.028
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 1404 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 1458
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 1459 --GKTCAFIDAEHALDP 1473
Score = 35.4 bits (82), Expect = 0.028
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 705 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 759
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 760 --GKTCAFIDAEHALDP 774
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 35.3 bits (81), Expect = 0.016
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYT 205
+ V ++ +G D+++ GG G TGKT + I +
Sbjct: 5 AYQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF-IYKGAEEY----- 58
Query: 206 GGKVIYVDSE 215
G ++V E
Sbjct: 59 GEPGVFVTLE 68
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 35.8 bits (83), Expect = 0.018
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 7 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 61
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 62 --GKTCAFIDAEHALDP 76
Score = 35.4 bits (82), Expect = 0.027
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 1054 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 1108
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 1109 --GKTCAFIDAEHALDP 1123
Score = 35.4 bits (82), Expect = 0.027
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 1748 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 1802
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 1803 --GKTCAFIDAEHALDP 1817
Score = 35.4 bits (82), Expect = 0.027
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 356 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 410
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 411 --GKTCAFIDAEHALDP 425
Score = 35.4 bits (82), Expect = 0.027
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 705 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 759
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 760 --GKTCAFIDAEHALDP 774
Score = 35.4 bits (82), Expect = 0.027
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 1400 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 1454
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 1455 --GKTCAFIDAEHALDP 1469
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
DNA-repair, ATP-binding, DNA DA recombination, DNA
repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium
smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A*
1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A
2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A*
2zrp_A* 2zre_A* ...
Length = 349
Score = 35.4 bits (82), Expect = 0.020
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
E R+ + I TGS LD LG GG+ + E +G +GKT + L A
Sbjct: 34 EVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTV--ALHAVANAQAA--- 88
Query: 204 YTGGKVIYVDSENTLYP 220
GG ++D+E+ L P
Sbjct: 89 --GGIAAFIDAEHALDP 103
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding,
cytoplasm, damage, DNA recombination, DNA repair,
DNA-binding; 1.95A {Thermotoga maritima}
Length = 356
Score = 35.0 bits (81), Expect = 0.023
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 126 KEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGK 184
K + M + D + + +V I TGS +D G GG I E FG+ +GK
Sbjct: 24 KGSIMILGDETQVQPVEV---------IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGK 74
Query: 185 TQLSHTLSITAQLPDETRGYTGGKVIYVDSENTLYP 220
T L L A+ GG ++D+E+ L P
Sbjct: 75 TTL--ALHAIAEAQKM-----GGVAAFIDAEHALDP 103
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA
repair, DNA binding protein; 1.90A {Escherichia coli}
SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A*
1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Length = 356
Score = 35.0 bits (81), Expect = 0.024
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L TL + A E
Sbjct: 36 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE--- 90
Query: 204 YTGGKVIYVDSENTLYP 220
G ++D+E+ L P
Sbjct: 91 --GKTCAFIDAEHALDP 105
>1xp8_A RECA protein, recombinase A; recombination, radioresistance,
DNA-repair, ATPase, DNA-BIND protein, DNA binding
protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP:
c.37.1.11 d.48.1.1
Length = 366
Score = 35.0 bits (81), Expect = 0.027
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
E + V ++TGS LD LG GGI ITE +G GKT L L+I AQ
Sbjct: 47 ESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTL--ALAIVAQAQKA--- 101
Query: 204 YTGGKVIYVDSENTLYP 220
GG ++D+E+ L P
Sbjct: 102 --GGTCAFIDAEHALDP 116
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.60A
{Pyrococcus horikoshii}
Length = 260
Score = 34.4 bits (78), Expect = 0.033
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 153 ITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIYV 212
++ ELD+ +G + I + + + I ++ V
Sbjct: 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDIL--FYILSRKLKS-----DNLVGMF 55
Query: 213 DSENTLYPLLNIIAIASLVTLVGSRLPMSFHITREDLIVF 252
+ YPL II I S + + ++ L +
Sbjct: 56 ---SISYPLQLIIRILSRF-----GVDVIKYLENHRLAIV 87
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y*
1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y*
1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y*
1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Length = 241
Score = 34.1 bits (77), Expect = 0.044
Identities = 16/114 (14%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 63 EEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKV 122
++EED E + ++ + + + L+ G +++ V+ + ++ + G A
Sbjct: 2 ADNEEDVEAEEEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALA 61
Query: 123 DKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEA 176
+IK + +V + + + G D+ + +++ +TE
Sbjct: 62 ARIKAD---------VGGLEVESETEAEVEEEGGEEAPDEDVETELQARGLTEK 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.1 bits (78), Expect = 0.050
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 148 KQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGG 207
++++G LD++ GGG +I A G TGKT L
Sbjct: 258 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV--SRFVENACAN-----KE 310
Query: 208 KVIYV 212
+ I
Sbjct: 311 RAILF 315
Score = 32.2 bits (73), Expect = 0.21
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 135 NSFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSIT 194
++ +T+ + + + K+ T D I GG+ T G TGKT SI
Sbjct: 3 SAEMTSPNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKT----LFSI- 57
Query: 195 AQLPDETRGYTGGKVIYV 212
Q ++V
Sbjct: 58 -QFLYNGIIEFDEPGVFV 74
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 33.1 bits (76), Expect = 0.091
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 152 KITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGKVIY 211
+++TG + DK++ GGI GE TGKT S L A+ + G IY
Sbjct: 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS--LHFIAKGLRD-----GDPCIY 56
Query: 212 V 212
V
Sbjct: 57 V 57
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 31.2 bits (71), Expect = 0.30
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 152 KITTGSTELDKILGGGI---ESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRGYTGGK 208
++ TG +D+IL GGI + ++ G TGKT S G
Sbjct: 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPG---TGKTIFS--QQFLWNGLKM-----GEP 53
Query: 209 VIYV 212
IYV
Sbjct: 54 GIYV 57
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand,
structural genomics, seattle S genomics center for
infectious disease, ssgcid; 1.90A {Entamoeba
histolytica} PDB: 3sia_A 3sib_A
Length = 220
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 22 SQMSLVQQQPSQGRASSQQSVHQARSSSQQSTGSVRTAAVEEEDEEDGEEFFQDVDILQN 81
+ L QP QG ++Q S + + + + ++F VD ++
Sbjct: 6 ANFCLWNLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTIPLDQYTRIYQWFMGVDRDRS 65
Query: 82 YNINVADIKK-LKSVGL 97
+ + ++ G+
Sbjct: 66 GTLEINELMMGQFPGGI 82
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 27.0 bits (59), Expect = 7.6
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 46 RSSSQQSTGSVRTAAVEEEDEEDGEEFFQDVDILQN----YNINVADIKKLKSVGLCTIK 101
+++ A + EEFF+ V+ ++ + NV +KK S L +
Sbjct: 15 KAAVSDEEDVEEVAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQ 74
Query: 102 GVQMTTRRKMSQIKGFSEAKVDKIKEACMKI 132
+ ++ ++ + +K++ I
Sbjct: 75 TDDQ-MKEELEELMTDIKRTANKVRGKLKTI 104
>2joe_A Hypothetical lipoprotein YEHR; six antiparallel beta strands, alpha
+ beta sandwich, structural genomics, PSI-2, protein
structure initiative; NMR {Escherichia coli} SCOP:
d.371.1.1
Length = 139
Score = 26.5 bits (58), Expect = 8.5
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 61 VEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSV------GLCTIKGVQMTTRRKMSQI 114
VEE+ ++V I ++ D K L+ + KG+ M + +
Sbjct: 69 VEEKLTYTDTYAQENVTI----DMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKA 124
Query: 115 KGFSEAK 121
GF E K
Sbjct: 125 AGFKEVK 131
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 26.8 bits (60), Expect = 9.6
Identities = 4/34 (11%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 204 YTGGKVIYVDSENTLYPLLNIIAIASLVTLVGSR 237
Y K +++D + T +++ + + +
Sbjct: 91 YLKAKPVFIDCDETY--NIDVDLLKLAIKECEKK 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,508,463
Number of extensions: 268694
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 51
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.9 bits)