RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13674
(315 letters)
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 85.1 bits (209), Expect = 6e-20
Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 136 SFLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITA 195
+F+ A + ++KR + +I+TGS LDK+LGGGIE+ AITE FGEF +GKTQL+HTL++
Sbjct: 1 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 60
Query: 196 QLPDETRGYTGGKVIYVDSENTLYP 220
QLP E G G VI++D+ENT P
Sbjct: 61 QLPPEEGGL-NGSVIWIDTENTFRP 84
Score = 63.9 bits (154), Expect = 2e-12
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 240 MSFHITREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEA 299
+ + FF DP +P+GG+I+AH++T R+ LRKG+G RIA++ D+P +PE
Sbjct: 185 FVTNQVQARPDAFFG---DPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEG 241
Query: 300 EAMFAITNGGIAD 312
EA+F+IT GI D
Sbjct: 242 EAVFSITEKGIED 254
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 84.4 bits (207), Expect = 1e-19
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 137 FLTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196
FLTA + EKRK VF ITTGS E DK+LGGGIESMAITEAFGEFRTGKTQLSHTL +TAQ
Sbjct: 3 FLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 62
Query: 197 LPDETRGYTGGKVIYVDSENTLYP 220
LP GY GGK+I++D+ENT P
Sbjct: 63 LPGA-GGYPGGKIIFIDTENTFRP 85
Score = 73.2 bits (178), Expect = 1e-15
Identities = 50/74 (67%), Positives = 56/74 (75%)
Query: 242 FHITREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEA 301
+ D ADPKKP+GG+I+AHASTTRISLRKGRGE RIAKIYDSP+MPE EA
Sbjct: 185 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEA 244
Query: 302 MFAITNGGIADAKD 315
FAIT GGI DAK+
Sbjct: 245 TFAITAGGIGDAKE 258
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 81.7 bits (200), Expect = 1e-18
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 138 LTAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197
+TAA +R ++ +TTGS LD +LGGG+E+ +ITE FGEFRTGK+QL HTL++T Q+
Sbjct: 1 VTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI 60
Query: 198 PDETRGYTGGKVIYVDSENTLYP 220
P + G GK +Y+D+E T P
Sbjct: 61 PLD-IGGGEGKCLYIDTEGTFRP 82
Score = 64.7 bits (156), Expect = 9e-13
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 242 FHITREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEA 301
+ + N DPKKP GGNIMAH+STTR+ +KG+G R+ K+ DSP +PEAE
Sbjct: 180 TNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAEC 239
Query: 302 MFAITNGGIAD 312
+FAI G+ D
Sbjct: 240 VFAIYEDGVGD 250
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 73.9 bits (182), Expect = 1e-17
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 67 EDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIK 126
E+ Q + L+ IN D+KKL+ G T++ V ++++ IKG SEAK DKI
Sbjct: 1 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 60
Query: 127 EACMKICD 134
K+
Sbjct: 61 AEAAKLVP 68
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 69.0 bits (169), Expect = 5e-16
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 75 DVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
++ LQ I +AD+KKL+ GL T + V R+ + +IKG SEAK DK+ ++
Sbjct: 2 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP 61
Query: 135 NSF 137
F
Sbjct: 62 MGF 64
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 72.8 bits (177), Expect = 1e-15
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 139 TAAQVVEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLP 198
+ ++++R V+K++T S+ELD +LGGG+ES ++TE G F +GKTQ+ H + Q P
Sbjct: 2 SGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP 61
Query: 199 D---------ETRGYTGGKVIYVDSENTLYPL 221
+ K +Y+D+E T P
Sbjct: 62 EFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE 93
Score = 65.9 bits (159), Expect = 4e-13
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 256 NADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEAMFAITNGGIAD 312
++ +GG+I+ HA+T R +RKG+G+ R+AK+YDSP +P+AEA+F IT GI D
Sbjct: 202 FGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 258
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 69.2 bits (169), Expect = 3e-14
Identities = 48/237 (20%), Positives = 78/237 (32%), Gaps = 71/237 (29%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ V I+TGS LD LG GG+ I E +G +GKT L+ + AQ +T
Sbjct: 27 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 86
Query: 204 YTGG-------------------------------------------KVIYVDSENTLYP 220
+ VI VDS L P
Sbjct: 87 FIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 146
Query: 221 LLNIIAIASLVTLVGSRLPMSFHITRE-------DLIVFF---------PLNADPKKPVG 264
I + + MS + + + ++ F + +P+ G
Sbjct: 147 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 206
Query: 265 GNIMAHASTTRISLRKGR----------GETRIAKIYDSPDMPEAEAMFAITNG-GI 310
GN + ++ R+ +R+ ETR+ + + P +A F I G GI
Sbjct: 207 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 263
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 63.7 bits (153), Expect = 2e-12
Identities = 47/74 (63%), Positives = 54/74 (72%)
Query: 242 FHITREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAKIYDSPDMPEAEA 301
+ + ADPKKP+GGNI+AHASTTR+ LRKGRGETRI KIYDSP +PEAEA
Sbjct: 169 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 228
Query: 302 MFAITNGGIADAKD 315
MFAI G+ DAKD
Sbjct: 229 MFAINADGVGDAKD 242
Score = 61.3 bits (147), Expect = 1e-11
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 149 QVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
++ +ITTGS ELDK+L GGIE+ +ITE FGEFRTGKTQ+ HTL++T QLP + G
Sbjct: 1 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG 55
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 61.1 bits (148), Expect = 2e-11
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
E + V ++TGS LD LG GGI ITE +G GKT L+ + AQ
Sbjct: 30 ESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----- 84
Query: 204 YTGGKVIYVDSENTLYP 220
GG ++D+E+ L P
Sbjct: 85 --GGTCAFIDAEHALDP 99
Score = 33.3 bits (76), Expect = 0.026
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 245 TREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGRGETRIAK 289
RE + V + +P+ GG + ++ R+ +RK T++
Sbjct: 193 VREKIGVMY---GNPETTTGGRALKFYASVRLDVRKIGQPTKVGN 234
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 269
Score = 57.6 bits (139), Expect = 3e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 145 EKRKQVFKITTGSTELDKILG-GGIESMAITEAFGEFRTGKTQLSHTLSITAQLPDETRG 203
E R+ + I TGS LD LG GG+ + E +G +GKT ++ AQ
Sbjct: 33 EARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----- 87
Query: 204 YTGGKVIYVDSENTLYP 220
GG ++D+E+ L P
Sbjct: 88 --GGVAAFIDAEHALDP 102
Score = 42.2 bits (99), Expect = 4e-05
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 245 TREDLIVFFPLNADPKKPVGGNIMAHASTTRISLRKGR---------GETRIAKIYDSPD 295
R+ + V F P+ GG + ++ R+ +R+ G K+ +
Sbjct: 196 LRDKIGVMFG---SPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKC 252
Query: 296 MPE-AEAMFAITNG-GI 310
+ +A F I G GI
Sbjct: 253 LAPFKQAEFDILYGKGI 269
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 50.8 bits (120), Expect = 5e-08
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQL 197
+ + + K+ T D I GG+ T G TGKT S +
Sbjct: 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 52
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 50.7 bits (120), Expect = 6e-08
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 146 KRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQLSHTLSITAQ 196
+R ++++G LD++ GGG +I A G TGKT L A
Sbjct: 1 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 51
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 41.9 bits (99), Expect = 2e-06
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICD 134
+ A +KL+ G T++ + + + ++ ++ G SE KI +A K +
Sbjct: 9 VGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 59
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 40.9 bits (96), Expect = 6e-06
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 84 INVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEACMKICDNSF 137
+ + +KL G + T +++ I+G SE K+ +CD F
Sbjct: 7 VGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGF 60
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 33.1 bits (75), Expect = 0.038
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 2 SQIMMQKKMSQIVDENNNNLSQMSLVQQQPSQGRASSQQSVHQARSSSQQSTGSVRTAAV 61
Q M+ + +E N+ +L+ + + + SV A+
Sbjct: 259 EQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAM 318
Query: 62 EEEDEEDGEE--FFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMS 112
+ + +E F +DIL Y+ KK K V+ ++S
Sbjct: 319 KSHESSPKKEVYFMAIIDILTPYDT----KKKAAH----AAKTVKHGAGAEIS 363
>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 163
Score = 28.6 bits (63), Expect = 0.68
Identities = 23/153 (15%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 56 VRTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQ-I 114
++ EF + + ++ V K L+ G+ +K +T + + +
Sbjct: 9 IKLEDFLHTLNTFNPEFVRY-EEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENN 67
Query: 115 KGFSEAKVDK-IKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKILGGG--IESM 171
+ F E + + E +++ ++K++ V+K+ + E++++ G G ++
Sbjct: 68 EEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIE 127
Query: 172 AITEAFGEFRTGKTQLSHTLSITAQLPDETRGY 204
I+++ E + +++ L + + E R Y
Sbjct: 128 VISDSPEEAKEKIWEVAKMLGLKEEDV-EPRLY 159
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 28.2 bits (62), Expect = 1.0
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 109 RKMSQIKGFSEAKVDKIKEACMKICDNSFLTAAQVVEKRKQVFKITTGSTELDKIL 164
+ Q F ++ + + ++ C + L V+ KQ F + + +
Sbjct: 14 TCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLF 69
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 25.9 bits (57), Expect = 1.9
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 106 TTRRKMSQIKGFSEAKVDKIKEACMKICDN 135
T +M + G K+++ + M +
Sbjct: 43 ITASEMLSVNGVGMRKLERFGKPFMALIRA 72
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha
subunit {Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 25.8 bits (57), Expect = 2.1
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 67 EDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIK 126
E EE ++ L ++ + LK G+ +++ + + + I G E +++IK
Sbjct: 1 EQEEELDLPLEEL---GLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIK 57
Query: 127 EA 128
EA
Sbjct: 58 EA 59
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.3 bits (59), Expect = 2.1
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 144 VEKRKQVFKITTGSTELDKILGGGIESMAITEAFGEFRTGKTQL 187
+ + V + +G T ++ G I GK+
Sbjct: 9 LSSEESVGLLFSGCTGINDKTLGARGGEVIMVT-SGSGMGKSTF 51
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic
protein PsbU {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 98
Score = 25.6 bits (56), Expect = 3.5
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 65 DEEDGEEFFQDVDILQNYNINVADIKKLKSVGLCTIKGVQMT----TRRKMSQIKGFSEA 120
DE+ G + + +D+ N N+A + + + K + + + I G +E
Sbjct: 8 DEKLGTAYGEKIDLN---NTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTER 64
Query: 121 KVDKIKE 127
+ ++E
Sbjct: 65 QKQILRE 71
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 25.1 bits (55), Expect = 4.2
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 12 QIVDENNNNLSQMSLVQQQPSQGRASSQQSVHQARSSSQQSTGSVRTAAVEEEDEEDGEE 71
++V N +S+M L + P+Q + + + + + + V + +E+ EE
Sbjct: 11 EMVSGNVRVMSEM-LTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEE 69
Query: 72 FFQDVDILQN 81
D L N
Sbjct: 70 LLIVNDNLNN 79
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 24.3 bits (53), Expect = 5.4
Identities = 8/52 (15%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 83 NINVADIKKLKSV-GLCT------IKGVQMTTRRKMSQIKGFSEAKVDKIKE 127
++N A +++L ++ G+ ++G + ++KG A +++++
Sbjct: 10 SLNEASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRP 61
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha
subunit {Escherichia coli [TaxId: 562]}
Length = 72
Score = 24.2 bits (53), Expect = 7.4
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 73 FQDVDILQNYNINVADIKKLKSVGLCTIKGVQMTTRRKMSQIKGFSEAKVDKIKEA 128
+ VD L + V LK+ + I + T ++ + + + +IK+
Sbjct: 5 LRPVDDL---ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 57
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like
protein {Leishmania major [TaxId: 5664]}
Length = 182
Score = 25.4 bits (54), Expect = 7.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 52 STGSVRTAAVEEEDEEDGEEFFQDVDILQNYNINVADIKKL 92
STG +A D ++ E+F+ VD + I+V ++
Sbjct: 3 STGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAA 43
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.4 bits (53), Expect = 9.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 106 TTRRKMSQIKGFSEAKVDK 124
TT + +I G SE K
Sbjct: 52 TTVENVKRIDGVSEGKAAM 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,818
Number of extensions: 46940
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 40
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)