BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13676
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 81 GFIIV--KYDS--DLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQCILK 136
GFIIV K D+ DLFI+DQHA+DEKYNFETLQ TV KSQKL++PQ + L+ I++ ++
Sbjct: 50 GFIIVTRKVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVL 109
Query: 137 DNLPVFYKNGFEFRI 151
DNLPVF KNGF+ +I
Sbjct: 110 DNLPVFEKNGFKLKI 124
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 81 GFIIV--KYDS--DLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQCILK 136
GFIIV K D+ DLFI+DQHA+DEKYNFETLQ TV KSQKL++PQ + L+ I++ ++
Sbjct: 49 GFIIVTRKVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVL 108
Query: 137 DNLPVFYKNGFEFRI 151
DNLPVF KNGF+ +I
Sbjct: 109 DNLPVFEKNGFKLKI 123
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 10 QLINIIPITQSSPDASLLEEFRIPPD--ITAMFTLSGFISSAIHGHGRSTADRQFYFVNS 67
QL ++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N
Sbjct: 235 QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINR 294
Query: 68 RPCEPSKV 75
RPC+P+KV
Sbjct: 295 RPCDPAKV 302
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 10 QLINIIPITQSSPDASLLEEFRIPPD--ITAMFTLSGFISSAIHGHGRSTADRQFYFVNS 67
QL ++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N
Sbjct: 235 QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINR 294
Query: 68 RPCEPSKV 75
RPC+P+KV
Sbjct: 295 RPCDPAKV 302
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 10 QLINIIPITQSSPDASLLEEFRIPPD--ITAMFTLSGFISSAIHGHGRSTADRQFYFVNS 67
QL ++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N
Sbjct: 235 QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINR 294
Query: 68 RPCEPSKV 75
RPC+P+KV
Sbjct: 295 RPCDPAKV 302
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 35 DITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPS 73
D+ + G+IS G GR++ DRQF +VN RP E S
Sbjct: 257 DLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYS 295
>pdb|3NCV|A Chain A, Ngol
pdb|3NCV|B Chain B, Ngol
Length = 220
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETL----QKTTVIKSQKLVVPQNLHLTKINQCILKD 137
+I+ + + L +ID HA E+ N+E + Q+ ++SQ L++P + L D
Sbjct: 40 YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALAD 99
Query: 138 NLPVFYKNGFEF 149
+ G E
Sbjct: 100 HAETLAGFGLEL 111
>pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
Length = 197
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 77 GQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTKINQ 132
GQ G +I+ + ++ L+IIDQHA E+ +E ++ + Q+++VP H +
Sbjct: 13 GQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEA 72
Query: 133 CILKDN 138
I++ +
Sbjct: 73 LIIEQH 78
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 30.0 bits (66), Expect = 0.85, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 29 EFRIPPDITAMFTLSGFISSAIHGHG------RSTADRQFYFVNSRPCEPSKVSGQAEGF 82
EF PP T +F+L GF + +H G + Y N RP P+K
Sbjct: 106 EFESPP--TLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNXRPXYPTKTFPNHYSI 163
Query: 83 IIVKYDSDLFIIDQHATDEKYN 104
+ Y IID D K N
Sbjct: 164 VTGLYPESHGIIDNKXYDPKXN 185
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 29 EFRIPPDITAMFTLSGFISSAIHGHG------RSTADRQFYFVNSRPCEPSKVSGQAEGF 82
EF PP T +F+L GF + +H G + Y N RP P+K
Sbjct: 106 EFESPP--TLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNMRPMYPTKTFPNHYSI 163
Query: 83 IIVKYDSDLFIIDQHATDEKYN 104
+ Y IID D K N
Sbjct: 164 VTGLYPESHGIIDNKMYDPKMN 185
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 29 EFRIPPDITAMFTLSGFISSAIHGHG------RSTADRQFYFVNSRPCEPSKVSGQAEGF 82
EF PP T +F+L GF + +H G + Y N RP P+K
Sbjct: 102 EFESPP--TLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNMRPMYPTKTFPNHYSI 159
Query: 83 IIVKYDSDLFIIDQHATDEKYN 104
+ Y IID D K N
Sbjct: 160 VTGLYPESHGIIDNKMYDPKMN 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,924,059
Number of Sequences: 62578
Number of extensions: 176137
Number of successful extensions: 361
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 13
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)