BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13676
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54278|PMS2_HUMAN Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2
Length = 862
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 57/71 (80%)
Query: 81 GFIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQCILKDNLP 140
GFII K + D+FI+DQHATDEKYNFE LQ+ TV++ Q+L+ PQ L+LT +N+ +L +NL
Sbjct: 685 GFIITKLNEDIFIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQTLNLTAVNEAVLIENLE 744
Query: 141 VFYKNGFEFRI 151
+F KNGF+F I
Sbjct: 745 IFRKNGFDFVI 755
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 10 QLINIIPITQSSPDASLLEEFRIPPD--ITAMFTLSGFISSAIHGHGRSTADRQFYFVNS 67
QL ++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N
Sbjct: 235 QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINR 294
Query: 68 RPCEPSKV 75
RPC+P+KV
Sbjct: 295 RPCDPAKV 302
>sp|P54279|PMS2_MOUSE Mismatch repair endonuclease PMS2 OS=Mus musculus GN=Pms2 PE=1 SV=1
Length = 859
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 56/71 (78%)
Query: 81 GFIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQCILKDNLP 140
GFI+ K DLF++DQHA DEKYNFE LQ+ TV+++Q+L+ PQ L+LT +N+ +L +NL
Sbjct: 682 GFIVTKLKEDLFLVDQHAADEKYNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVLIENLE 741
Query: 141 VFYKNGFEFRI 151
+F KNGF+F I
Sbjct: 742 IFRKNGFDFVI 752
>sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PMS1 PE=1 SV=3
Length = 873
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 74 KVSGQAE-GFIIV--KYDS--DLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLT 128
+V GQ GFIIV K D+ DLFI+DQHA+DEKYNFETLQ TV KSQKL++PQ + L+
Sbjct: 675 EVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELS 734
Query: 129 KINQCILKDNLPVFYKNGFEFRI 151
I++ ++ DNLPVF KNGF+ +I
Sbjct: 735 VIDELVVLDNLPVFEKNGFKLKI 757
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 35 DITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKV 75
D+ + G+IS G GR++ DRQF +VN RP E S +
Sbjct: 255 DLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTL 295
>sp|P54280|PMS1_SCHPO DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1
Length = 794
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQ 132
+V GQ GFI+V + ++LFIIDQHA+DEK+N+E L+ VI SQ LV+P+ L L +
Sbjct: 612 RVVGQFNRGFIVVVHGNNLFIIDQHASDEKFNYEHLKSNLVINSQDLVLPKRLDLAATEE 671
Query: 133 CILKDNLPVFYKNGFEFRITM 153
+L D++ + + GF I +
Sbjct: 672 TVLIDHIDLIRRKGFGVAIDL 692
>sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum
GN=pms1 PE=3 SV=1
Length = 1022
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 81 GFIIVKYDSDLFIIDQHATDEKYNFETLQKT--TVIKSQKLVVPQNL-HLTKINQCILKD 137
GFII K +DLFIIDQHA DEKYNFE L K+ + I SQ L+ P L LT + I+ +
Sbjct: 823 GFIIAKLGNDLFIIDQHAADEKYNFEILSKSVESSINSQPLLKPDTLSDLTSEEELIIIE 882
Query: 138 NLPVFYKNGFEFRI 151
N+ +F KNGF+F I
Sbjct: 883 NVDLFKKNGFKFII 896
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 55 RSTADRQFYFVNSRPCEPSKVS 76
RS ADRQF+FVNSRP E SK++
Sbjct: 291 RSCADRQFFFVNSRPFEHSKLA 312
>sp|A5GEV5|MUTL_GEOUR DNA mismatch repair protein MutL OS=Geobacter uraniireducens
(strain Rf4) GN=mutL PE=3 SV=1
Length = 602
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 17 ITQSSPDASLLEEFRIPPDITAMFTLSGFISSAIHGHGRSTA----DRQFYFVNSRPCEP 72
+ + SP+ L + F +PP T G +S + TA + + Y+ C
Sbjct: 362 LARYSPEKHLQQSFTVPPAATFQ-RQQGAVSLPVAAREDDTASDKTESKGYY-----CSL 415
Query: 73 SKVSGQAEGFIIVKYDSDLFIIDQHATDEKYNFETLQ---KTTVIKSQKLVVPQNLHLTK 129
S + +I+ + +DL IIDQHA E+ FE L+ ++SQ+L+ P+ + L+
Sbjct: 416 SVIGQFNAAYILCQDGTDLVIIDQHAAHERVAFEKLKAQFAAAQVESQRLLFPETIELSF 475
Query: 130 INQCILKDNLPVFYKNGFEF 149
L+++L + GF
Sbjct: 476 KEGATLREHLAELGRLGFSL 495
>sp|B1H0C7|MUTL_UNCTG DNA mismatch repair protein MutL OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=mutL PE=3 SV=1
Length = 595
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 74 KVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFE---TLQKTTVIKSQKLVVPQNLHLTK 129
KV GQ + +II DL+I DQHA E+ +E + K+ IK Q++++P+N L+
Sbjct: 410 KVIGQVFDTYIIASNKGDLYIFDQHAAAERVRYEFYLSQMKSQTIKIQQMLMPENFDLSP 469
Query: 130 INQCILKDNLPVFYKNGF--------EFRITMMFANLRN 160
+LK N+ +F + G FRIT A L N
Sbjct: 470 SISELLKANINIFNELGISIEEFGQNSFRITAYPALLGN 508
>sp|A3CWX7|MUTL_METMJ DNA mismatch repair protein MutL OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=mutL PE=3 SV=1
Length = 585
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 77 GQAEGFIIVKYDSD--LFIIDQHATDEK--YNFETLQKTTVIKSQKLVVPQNLHLTKINQ 132
GQ IV +D L+++DQHA E+ Y+ T Q+ SQ+L+ P L L
Sbjct: 402 GQVAATYIVAEGADGTLYLVDQHAAHERVLYDQVTEQRDKAAGSQELITPVVLSLPPKES 461
Query: 133 CILKDNLPVFYKNGF 147
L+D +P+ GF
Sbjct: 462 AALRDAIPLLADEGF 476
>sp|C5CF28|MUTL_KOSOT DNA mismatch repair protein MutL OS=Kosmotoga olearia (strain TBF
19.5.1) GN=mutL PE=3 SV=1
Length = 602
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 57 TADRQFYFVNSRPC-EPSKVSGQAEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIK 115
TA R+F ++ EP E +I+ + L I+DQHA E+ +E L+K I+
Sbjct: 405 TASRRFEKTEAKETGEPRLFGVFGERYILAETKDGLLIVDQHAAHERLIYEKLKKAAKIQ 464
Query: 116 SQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEF 149
SQKL+ P L L + +L++ K GF+
Sbjct: 465 SQKLLSPIRLTLEDSRKSLLREKKNDVEKLGFQI 498
>sp|Q895H3|MUTL_CLOTE DNA mismatch repair protein MutL OS=Clostridium tetani (strain
Massachusetts / E88) GN=mutL PE=3 SV=1
Length = 620
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQ---KTTVIKSQKLVVPQNLHLTK 129
K+ GQ + +I+ + +L+IIDQHA EK FET + K +KSQ L+ P L L
Sbjct: 433 KIIGQFDNTYILAESVKNLYIIDQHAAHEKILFETYRDKIKKDEVKSQLLLQPIVLELDS 492
Query: 130 INQCILKDNLPVFYKNGFEFRI 151
+ DN +FYK GF +
Sbjct: 493 EDFSYYVDNKELFYKTGFNIEV 514
>sp|A2SSN1|MUTL_METLZ DNA mismatch repair protein MutL OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=mutL PE=3 SV=1
Length = 588
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 74 KVSGQ-AEGFIIVKYDS-DLFIIDQHATDEKYNFETL--QKTTVIKSQKLVVPQNLHLTK 129
+V GQ + +I+ K +S DL ++DQHA E+ ++ L + ++ Q+L+VPQ + L+K
Sbjct: 403 EVLGQIGDTYILAKNESGDLIVVDQHAAHERIMYDQLLARSSSAEAGQELIVPQPITLSK 462
Query: 130 INQCILKDNLPVFYKNGF 147
L D L V G+
Sbjct: 463 KETAALPDLLDVLAAAGY 480
>sp|C0QSY6|MUTL_PERMH DNA mismatch repair protein MutL OS=Persephonella marina (strain
DSM 14350 / EX-H1) GN=mutL PE=3 SV=1
Length = 520
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 77 GQAEG-FIIVKYDSDLFIIDQHATDEKYNFET----LQKTTVIKSQKLVVPQNLHLTKIN 131
GQ E FI+V YD D+++IDQH E+ N+E L++ IK + L ++++
Sbjct: 344 GQVENTFIVVYYDGDIYLIDQHVVHERINYEILMEDLREDGFIKRKILNRNITHSISELE 403
Query: 132 QCILKDNLPVFYKNGFEFRI 151
+ +++D ++GF F I
Sbjct: 404 KALIEDKKGTLERSGFSFDI 423
>sp|B5EGD4|MUTL_GEOBB DNA mismatch repair protein MutL OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=mutL PE=3 SV=1
Length = 647
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETLQKTTV---IKSQKLVVPQNLHLTKINQCILKDN 138
+I+ + +DL +IDQHA E+ FE L+ + SQ L+ P+ + + +L+++
Sbjct: 469 YILCQRGTDLVLIDQHAAHERVAFEKLKGQFAGREVDSQGLLFPETMEFSFRESAVLREH 528
Query: 139 LPVFYKNGFEF 149
L + GFEF
Sbjct: 529 LAELARLGFEF 539
>sp|O83325|MUTL_TREPA DNA mismatch repair protein MutL OS=Treponema pallidum (strain
Nichols) GN=mutL PE=3 SV=2
Length = 620
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLH 126
KV GQ G FI V+ ++ L++IDQHA E+ F+TLQ+ + +Q L++P ++H
Sbjct: 444 KVLGQVAGTFIAVERNNALYLIDQHAAHERIIFDTLQR-NLGTAQILLIPYHIH 496
>sp|B8CX97|MUTL_HALOH DNA mismatch repair protein MutL OS=Halothermothrix orenii (strain
H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1
Length = 644
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETL---QKTTVIKSQKLVVPQNLHLTK 129
+V GQ + +II + L+IIDQH E+ +++ + I SQ LVVP N+ T
Sbjct: 457 RVLGQIKNTYIIAEGRDGLYIIDQHNAHERILYQSFIEKYNNSEIVSQPLVVPVNIETTA 516
Query: 130 INQCILKDNLPVFYKNGFEFRI 151
+LK LP K GF+ +
Sbjct: 517 PEAEVLKSYLPQLEKMGFKLEV 538
>sp|Q67NL0|MUTL_SYMTH DNA mismatch repair protein MutL OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=mutL PE=3 SV=1
Length = 635
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 91 LFIIDQHATDEKYNFETL------QKTTVIKSQKLVVPQNLHLTKINQCILKDNLPVFYK 144
L++IDQHA E+ FE L Q T V Q+L+ P L LT I ++N +F +
Sbjct: 464 LYLIDQHAAHERIFFERLYAAAQEQATAV---QRLLFPLTLDLTPAQMAIWQENAAIFAE 520
Query: 145 NGFE 148
+GFE
Sbjct: 521 SGFE 524
>sp|A6TR78|MUTL_ALKMQ DNA mismatch repair protein MutL OS=Alkaliphilus metalliredigens
(strain QYMF) GN=mutL PE=3 SV=1
Length = 637
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 74 KVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNF----ETLQKTTVIKSQKLVVPQNLHLT 128
KV GQ +I+++ D +++IDQHA EK + E L+K TV SQ+L+ P L +
Sbjct: 451 KVVGQLFNTYIVIEKDQSVYLIDQHAAHEKLLYIQFHEELKKETV-ASQQLLTPVVLEFS 509
Query: 129 KINQCILKDNLPVFYKNGFEFR 150
+ L +N+ F GFE
Sbjct: 510 HEDYITLIENISEFIPLGFELE 531
>sp|Q1ILN0|MUTL_KORVE DNA mismatch repair protein MutL OS=Koribacter versatilis (strain
Ellin345) GN=mutL PE=3 SV=1
Length = 647
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 80 EGFIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTKINQCILK 136
E FI+ + L+IIDQH E+ FE + K +++Q+L++P + LT Q +
Sbjct: 467 ESFILATSNEGLWIIDQHVAHERVLFEKVLKQRAAASVETQQLLMPLIVELTPGQQAVFT 526
Query: 137 DNLPVFYKNGFE 148
+ ++NGFE
Sbjct: 527 EIAEELHQNGFE 538
>sp|Q9HSM6|MUTL_HALSA DNA mismatch repair protein MutL OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=mutL PE=3 SV=1
Length = 659
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 52 GHGRSTADRQFYFVNSRPCEPSKVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQK 110
G G AD Q +V GQ + +++ + L ++DQHA DE+ ++E LQ
Sbjct: 440 GAGGPEADDQDTTSERDSLPDLRVLGQLHDTYVVAEAGDGLVLVDQHAADERVHYERLQA 499
Query: 111 TTVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFE 148
SQ LV P L LT + + L + GF+
Sbjct: 500 RVDGASQALVAPAELELTAGEAAVFEAALGGLRELGFD 537
>sp|B0R2S6|MUTL_HALS3 DNA mismatch repair protein MutL OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=mutL PE=3 SV=1
Length = 659
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 52 GHGRSTADRQFYFVNSRPCEPSKVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQK 110
G G AD Q +V GQ + +++ + L ++DQHA DE+ ++E LQ
Sbjct: 440 GAGGPEADDQDTTSERDSLPDLRVLGQLHDTYVVAEAGDGLVLVDQHAADERVHYERLQA 499
Query: 111 TTVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFE 148
SQ LV P L LT + + L + GF+
Sbjct: 500 RVDGASQALVAPAELELTAGEAAVFEAALGGLRELGFD 537
>sp|A6LWJ1|MUTL_CLOB8 DNA mismatch repair protein MutL OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=mutL PE=3 SV=1
Length = 664
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 72 PSKVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLH 126
P + GQ + +I+ +YD L++IDQHA EK FE +++ T+I Q L+VP +
Sbjct: 475 PITIIGQYNKTYILGEYDGTLYMIDQHAAHEKILFEKYLKEIEEGTII-IQPLIVPSIID 533
Query: 127 LTKINQCILKDNLPVFYKNGF 147
L+ + ++N +F + GF
Sbjct: 534 LSIDDYSYFEENKDIFREAGF 554
>sp|C6E4L2|MUTL_GEOSM DNA mismatch repair protein MutL OS=Geobacter sp. (strain M21)
GN=mutL PE=3 SV=1
Length = 650
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETLQKTTV---IKSQKLVVPQNLHLTKINQCILKDN 138
+I+ + +DL +IDQHA E+ FE L+ + SQ L+ P+ + + +L+++
Sbjct: 472 YILCQRGTDLILIDQHAAHERVAFEKLKGQFAGREVDSQGLLFPETMEFSFRESAVLREH 531
Query: 139 LPVFYKNGFEF 149
+ GFEF
Sbjct: 532 QAELARLGFEF 542
>sp|C0R515|MUTL_WOLWR DNA mismatch repair protein MutL OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=mutL PE=3 SV=1
Length = 605
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQC------IL 135
+II + L I+DQHA E+ +E L++ + IK QKL++P+ + + NQ I
Sbjct: 429 YIIAEVRDKLIIVDQHAAHERLVYECLKQKSSIKRQKLLLPETVEIK--NQAGMEMIEIY 486
Query: 136 KDNLPVFYKNGFEFRI 151
KD L ++ GF+ I
Sbjct: 487 KDKL---FEMGFDIEI 499
>sp|Q0STR3|MUTL_CLOPS DNA mismatch repair protein MutL OS=Clostridium perfringens (strain
SM101 / Type A) GN=mutL PE=3 SV=1
Length = 674
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTV---IKSQKLVVPQNLHLTK 129
KV GQ + +I+ +YDS L++IDQHA EK FE ++ Q L++P + L
Sbjct: 487 KVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIPLVVTLPT 546
Query: 130 INQCILKDNLPVFYKNGF 147
+ +N +F K GF
Sbjct: 547 EDYLYYDENKEIFEKAGF 564
>sp|Q0TRD5|MUTL_CLOP1 DNA mismatch repair protein MutL OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=mutL PE=3 SV=1
Length = 674
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTV---IKSQKLVVPQNLHLTK 129
+V GQ + +I+ +YDS L++IDQHA EK FE ++ Q L++P + L
Sbjct: 487 RVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKRVEIQPLMIPLVVTLPT 546
Query: 130 INQCILKDNLPVFYKNGF 147
+ +N +F K GF
Sbjct: 547 EDYLYYDENKEIFEKAGF 564
>sp|Q8XL86|MUTL_CLOPE DNA mismatch repair protein MutL OS=Clostridium perfringens (strain
13 / Type A) GN=mutL PE=3 SV=1
Length = 674
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTV---IKSQKLVVPQNLHLTK 129
+V GQ + +I+ +YDS L++IDQHA EK FE ++ Q L++P + L
Sbjct: 487 RVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIPLVVTLPT 546
Query: 130 INQCILKDNLPVFYKNGF 147
+ +N +F K GF
Sbjct: 547 EDYLYYDENKEIFEKAGF 564
>sp|B1KSA2|MUTL_CLOBM DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=mutL PE=3 SV=1
Length = 666
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLHLT 128
K+ GQ +I+++ D +L+IIDQHA EK FE ++K VI SQ L+ P + L+
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKSEIEKGYVI-SQILLSPVVIELS 537
Query: 129 KINQCILKDNLPVFYKNGF 147
+ I ++N +F +GF
Sbjct: 538 EDEFNIYEENKDIFKNSGF 556
>sp|A7FUK9|MUTL_CLOB1 DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=mutL PE=3 SV=1
Length = 666
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLHLT 128
K+ GQ +I+++ D +L+IIDQHA EK FE ++K VI SQ L+ P + L+
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKCEIEKGYVI-SQILLSPVVIELS 537
Query: 129 KINQCILKDNLPVFYKNGF 147
+ I ++N +F +GF
Sbjct: 538 EDEFNIYEENKDIFKNSGF 556
>sp|B1IM67|MUTL_CLOBK DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
Okra / Type B1) GN=mutL PE=3 SV=1
Length = 666
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLHLT 128
K+ GQ +I+++ D +L+IIDQHA EK FE ++K VI SQ L+ P + L+
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKSEIEKGYVI-SQILLSPVVIELS 537
Query: 129 KINQCILKDNLPVFYKNGF 147
+ I ++N +F +GF
Sbjct: 538 EDEFNIYEENKDIFKNSGF 556
>sp|C1FNT8|MUTL_CLOBJ DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=mutL PE=3 SV=1
Length = 666
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLHLT 128
K+ GQ +I+++ D +L+IIDQHA EK FE ++K VI SQ L+ P + L+
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKSEIEKGYVI-SQILLSPVVIELS 537
Query: 129 KINQCILKDNLPVFYKNGF 147
+ I ++N +F +GF
Sbjct: 538 EDEFNIYEENKDIFKNSGF 556
>sp|B9DPC0|MUTL_STACT DNA mismatch repair protein MutL OS=Staphylococcus carnosus (strain
TM300) GN=mutL PE=3 SV=1
Length = 646
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTK 129
+V GQ G +II + ++ +F+IDQHA E+ +E + + Q L++P H +K
Sbjct: 459 EVVGQVHGTYIIAQNETGMFMIDQHAAQERIKYEYFRDKIGEVTNEVQNLLIPMTFHFSK 518
Query: 130 INQCIL---KDNL 139
Q I+ KD L
Sbjct: 519 DEQMIINQYKDEL 531
>sp|C3KX34|MUTL_CLOB6 DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
657 / Type Ba4) GN=mutL PE=3 SV=1
Length = 666
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFE----TLQKTTVIKSQKLVVPQNLHLT 128
K+ GQ +I+++ D +L+IIDQHA EK FE ++K V+ SQ L+ P + L+
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKSEIEKGYVV-SQILLSPVVIELS 537
Query: 129 KINQCILKDNLPVFYKNGF 147
+ I ++N +F +GF
Sbjct: 538 EDEFNIYEENKDIFKNSGF 556
>sp|A7GE44|MUTL_CLOBL DNA mismatch repair protein MutL OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=mutL PE=3 SV=1
Length = 666
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQ---KTTVIKSQKLVVPQNLHLTK 129
K+ GQ +I+++ D +L+IIDQHA EK FE + + + SQ L+ P + L++
Sbjct: 479 KIIGQFNNTYILIEKDKELYIIDQHAAHEKVLFEKFKSEIENRYVISQILLSPVVIELSE 538
Query: 130 INQCILKDNLPVFYKNGF 147
I ++N +F +GF
Sbjct: 539 DEFNIYEENKDIFKNSGF 556
>sp|B0ST13|MUTL_LEPBP DNA mismatch repair protein MutL OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mutL PE=3
SV=1
Length = 614
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 80 EGFIIVKYDSDLFIIDQHATDEKYNFETL---QKTTVIKSQKLVVPQNLHLTK 129
E FI+ + + L+IIDQH E+ +E + K+ KSQ L+ P L LTK
Sbjct: 436 ETFILAEAEDGLYIIDQHTAHERIRYEEVLRDLKSKAYKSQSLLTPIRLELTK 488
>sp|B0SB85|MUTL_LEPBA DNA mismatch repair protein MutL OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / Ames) GN=mutL PE=3 SV=1
Length = 614
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 80 EGFIIVKYDSDLFIIDQHATDEKYNFETL---QKTTVIKSQKLVVPQNLHLTK 129
E FI+ + + L+IIDQH E+ +E + K+ KSQ L+ P L LTK
Sbjct: 436 ETFILAEAEDGLYIIDQHTAHERIRYEEVLRDLKSKAYKSQSLLTPIRLELTK 488
>sp|Q8CPE9|MUTL_STAES DNA mismatch repair protein MutL OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mutL PE=3 SV=1
Length = 645
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTK 129
++ GQ G +II + ++ +F+IDQHA E+ +E ++ + Q L++P H +K
Sbjct: 458 EIVGQVHGTYIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSK 517
Query: 130 INQCIL 135
Q I+
Sbjct: 518 DEQMII 523
>sp|Q5HPP4|MUTL_STAEQ DNA mismatch repair protein MutL OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mutL PE=3 SV=1
Length = 645
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 74 KVSGQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTK 129
++ GQ G +II + ++ +F+IDQHA E+ +E ++ + Q L++P H +K
Sbjct: 458 EIVGQVHGTYIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSK 517
Query: 130 INQCIL 135
Q I+
Sbjct: 518 DEQMII 523
>sp|A1QZ05|MUTL_BORT9 DNA mismatch repair protein MutL OS=Borrelia turicatae (strain
91E135) GN=mutL PE=3 SV=1
Length = 612
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVP 122
F+IV+ D+++F IDQHA EK ++TL + I +QKL++P
Sbjct: 444 FLIVEKDNEVFFIDQHALHEKIIYQTLINSEKI-TQKLLIP 483
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
GN=Taf3 PE=1 SV=2
Length = 932
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
A +R DG R++++K K KKK +++ K++K K+++
Sbjct: 602 AKVRLKDGIVRREREKHKDKKKDRERSKREKDKRER 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,087,521
Number of Sequences: 539616
Number of extensions: 3266922
Number of successful extensions: 117967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 85724
Number of HSP's gapped (non-prelim): 19173
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)