Query psy13676
Match_columns 200
No_of_seqs 205 out of 1119
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:34:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdg_A DNA mismatch repair pro 99.8 2.8E-21 9.5E-26 160.4 8.3 87 70-156 6-96 (197)
2 3ncv_A DNA mismatch repair pro 99.8 1.1E-20 3.8E-25 159.8 8.9 86 71-156 28-118 (220)
3 1x9z_A DNA mismatch repair pro 99.8 2.8E-19 9.6E-24 147.0 8.8 85 71-156 7-94 (188)
4 3h4l_A DNA mismatch repair pro 98.8 1.2E-09 4E-14 98.5 2.5 86 37-122 259-366 (367)
5 1h7s_A PMS1 protein homolog 2; 98.5 9.7E-08 3.3E-12 85.7 5.3 74 38-111 265-358 (365)
6 3na3_A DNA mismatch repair pro 97.8 4.4E-06 1.5E-10 74.8 0.8 96 11-110 213-329 (348)
7 1b63_A MUTL; DNA mismatch repa 97.6 1.4E-05 4.7E-10 70.6 1.0 72 38-111 234-327 (333)
8 1914_A Signal recognition part 38.2 2.7 9.4E-05 35.4 -2.4 13 127-139 90-102 (232)
9 3rbn_A DNA mismatch repair pro 33.1 35 0.0012 29.4 3.7 38 74-111 62-100 (284)
10 3cwv_A DNA gyrase, B subunit, 20.8 67 0.0023 28.2 3.3 30 38-72 235-264 (369)
11 2ioq_A Chaperone protein HTPG; 20.7 55 0.0019 31.0 2.9 34 38-71 270-307 (624)
12 1s16_A Topoisomerase IV subuni 20.2 74 0.0025 28.1 3.5 31 38-72 245-275 (390)
No 1
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=99.84 E-value=2.8e-21 Score=160.36 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=81.2
Q ss_pred CCCCcccccc-ceEEEEEeCCceeeeechhhhHHHHHHHHhhh---ccccccccccCceeecCHHHHHHHHhhHHHHHhC
Q psy13676 70 CEPSKVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQKT---TVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKN 145 (200)
Q Consensus 70 ~~~~Kv~gq~-~~yIla~~~~~L~lIDqHAAhERIlyE~L~~~---~~~~sQ~Ll~P~~l~Ls~~e~~ll~e~~~~L~~l 145 (200)
+...+++||+ ++|||++.+++|++||||||||||+||+|++. ....+|+|++|+.+++++.|.+.+.++.+.|++|
T Consensus 6 ~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~ls~~e~~~l~~~~~~l~~~ 85 (197)
T 3kdg_A 6 VPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELESV 85 (197)
T ss_dssp CCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHHHT
T ss_pred CCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEecCHHHHHHHHHHHHHHHhC
Confidence 4557899999 99999999999999999999999999999987 4578999999999999999999999999999999
Q ss_pred CCeeEEcCCcc
Q psy13676 146 GFEFRITMMFA 156 (200)
Q Consensus 146 Gf~ie~~g~~~ 156 (200)
||+++.+|+++
T Consensus 86 Gf~~e~~g~~~ 96 (197)
T 3kdg_A 86 GVFLESFGSNS 96 (197)
T ss_dssp TCCCEECSTTE
T ss_pred CCEEEECCCCE
Confidence 99999988765
No 2
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=99.83 E-value=1.1e-20 Score=159.80 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=79.9
Q ss_pred CCCcccccc-ceEEEEEeCCceeeeechhhhHHHHHHHHhhh----ccccccccccCceeecCHHHHHHHHhhHHHHHhC
Q psy13676 71 EPSKVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQKT----TVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKN 145 (200)
Q Consensus 71 ~~~Kv~gq~-~~yIla~~~~~L~lIDqHAAhERIlyE~L~~~----~~~~sQ~Ll~P~~l~Ls~~e~~ll~e~~~~L~~l 145 (200)
...+++||+ ++|||++.+++|++||||||||||+||+|+++ ....+|+|++|+.+++++.|.+++.++.+.|++|
T Consensus 28 p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~Ls~~e~~~l~~~~~~L~~l 107 (220)
T 3ncv_A 28 PLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETLAGF 107 (220)
T ss_dssp TTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred CCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEEcCHHHHHHHHHHHHHHHhC
Confidence 346899999 99999999999999999999999999999985 3478999999999999999999999999999999
Q ss_pred CCeeEEcCCcc
Q psy13676 146 GFEFRITMMFA 156 (200)
Q Consensus 146 Gf~ie~~g~~~ 156 (200)
||+++.+|++.
T Consensus 108 Gf~ie~fg~~~ 118 (220)
T 3ncv_A 108 GLELSDMGGNT 118 (220)
T ss_dssp TCEEECCSTTE
T ss_pred CCEEEECCCCE
Confidence 99999987765
No 3
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=99.78 E-value=2.8e-19 Score=147.03 Aligned_cols=85 Identities=12% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCcccccc-ceEEEEEeCCceeeeechhhhHHHHHHHHhhh--ccccccccccCceeecCHHHHHHHHhhHHHHHhCCC
Q psy13676 71 EPSKVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQKT--TVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGF 147 (200)
Q Consensus 71 ~~~Kv~gq~-~~yIla~~~~~L~lIDqHAAhERIlyE~L~~~--~~~~sQ~Ll~P~~l~Ls~~e~~ll~e~~~~L~~lGf 147 (200)
...+++||+ ++|||++.+++|++|||||| |||+||++++. ....+|+|++|+.+++++.|.+.+.++.+.|+++||
T Consensus 7 ~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~Gf 85 (188)
T 1x9z_A 7 SFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGI 85 (188)
T ss_dssp CCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred CCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhCCc
Confidence 445788999 99999999999999999999 99999999986 457899999999999999999999999999999999
Q ss_pred eeEEcCCcc
Q psy13676 148 EFRITMMFA 156 (200)
Q Consensus 148 ~ie~~g~~~ 156 (200)
+++.+|++.
T Consensus 86 ~~e~~g~~~ 94 (188)
T 1x9z_A 86 DFQSDAQHV 94 (188)
T ss_dssp EEEECSSEE
T ss_pred EEEEcCCcE
Confidence 999998873
No 4
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.2e-09 Score=98.55 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=69.9
Q ss_pred CcceEEEEEEeccccCCCCCCCcceeeeecCCCCCCCcccccc-----------ceEEEEEeCCceeeeechh-------
Q psy13676 37 TAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVSGQA-----------EGFIIVKYDSDLFIIDQHA------- 98 (200)
Q Consensus 37 ~~~~~v~G~is~~~~g~gRs~~Drq~~~INkrp~~~~Kv~gq~-----------~~yIla~~~~~L~lIDqHA------- 98 (200)
...++|+||||.|.++++|+++|+||+|||+|||..+.+.+.+ .+++++.+.-+.-.+|.|.
T Consensus 259 ~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDVNVhP~K~eV 338 (367)
T 3h4l_A 259 DYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVI 338 (367)
T ss_dssp CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTCSSCBCCEEEEEECCGGGEECCCSSSTTCC
T ss_pred CCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcCCCCCcEEEEEEEcChHHcceeECCCCCEE
Confidence 3678999999999999999999999999999999988776654 3667888888888899887
Q ss_pred --hhHHHHHHHHhhh--ccccccccccC
Q psy13676 99 --TDEKYNFETLQKT--TVIKSQKLVVP 122 (200)
Q Consensus 99 --AhERIlyE~L~~~--~~~~sQ~Ll~P 122 (200)
.+|+.+++.+... ..+..+...+|
T Consensus 339 ~f~~e~~i~~~i~~~l~~~~~~~~~~~~ 366 (367)
T 3h4l_A 339 LLHNERAVIDIFKTTLSDYYNRQELALP 366 (367)
T ss_dssp EETTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEcCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 7899999988876 34444444444
No 5
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.49 E-value=9.7e-08 Score=85.73 Aligned_cols=74 Identities=39% Similarity=0.751 Sum_probs=60.4
Q ss_pred cceEEEEEEeccccCCCCCCCcceeeeecCCCCCCCcccccc-----------ceEEEEEeCCceeeeechh--------
Q psy13676 38 AMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVSGQA-----------EGFIIVKYDSDLFIIDQHA-------- 98 (200)
Q Consensus 38 ~~~~v~G~is~~~~g~gRs~~Drq~~~INkrp~~~~Kv~gq~-----------~~yIla~~~~~L~lIDqHA-------- 98 (200)
..++|+||||.|.+++||+++|+||+|||+||+..+.+.+.+ .+++++.+.-+.-.+|.|.
T Consensus 265 ~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDvNVhP~K~eV~ 344 (365)
T 1h7s_A 265 NLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQIL 344 (365)
T ss_dssp CCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTTCBCCEEEEEECCGGGEEEC------CEE
T ss_pred ccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCccCCcEEEEEEEeChHHcceEECCCcCEEE
Confidence 568999999999999999999999999999999988765444 3667788888878889888
Q ss_pred -hhHHHHHHHHhhh
Q psy13676 99 -TDEKYNFETLQKT 111 (200)
Q Consensus 99 -AhERIlyE~L~~~ 111 (200)
.+|+.+++.+...
T Consensus 345 f~~e~~i~~~i~~~ 358 (365)
T 1h7s_A 345 LQEEKLLLAVLKTS 358 (365)
T ss_dssp ETTHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHH
Confidence 6677777766553
No 6
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.77 E-value=4.4e-06 Score=74.77 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=53.0
Q ss_pred hhhccccccCCCccccccccCCCCCCCcceEEEEEEeccccCCCCCCCcceeeeecCCCCCCCcccccc-----------
Q psy13676 11 LINIIPITQSSPDASLLEEFRIPPDITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVSGQA----------- 79 (200)
Q Consensus 11 l~~~l~~~~~~~~~~~L~~~~~~~~~~~~~~v~G~is~~~~g~gRs~~Drq~~~INkrp~~~~Kv~gq~----------- 79 (200)
+.+.+..+++..-...|.+++... ....+.|+||||.|... +..++||+|||+|++..+.+.+.+
T Consensus 213 ~~~~i~~i~G~~~~~~l~~v~~~~-~~~~~~i~G~is~p~~~---~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~ 288 (348)
T 3na3_A 213 TVDNIRSIFGNAVSRELIEIGCED-KTLAFKMNGYISNANYS---VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKN 288 (348)
T ss_dssp HHHHHHHHHCHHHHTTEEEEEEEE-GGGTEEEEEEEECSSCC---BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhChHhHhhcEEEEeec-CCccEEEEEEEeCCccC---CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCC
Confidence 344444444433333344444431 11358999999999855 234689999999999988776554
Q ss_pred -ceEEEEEeCCceeeeechh---------hhHHHHHHHHhh
Q psy13676 80 -EGFIIVKYDSDLFIIDQHA---------TDEKYNFETLQK 110 (200)
Q Consensus 80 -~~yIla~~~~~L~lIDqHA---------AhERIlyE~L~~ 110 (200)
.|++++.+.-+.-.+|.|. .+|+.+++.+..
T Consensus 289 ~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~ 329 (348)
T 3na3_A 289 THPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQ 329 (348)
T ss_dssp CBCEEEEEEECC----------------------CTHHHHH
T ss_pred CceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHHH
Confidence 2678888888888899988 445555554444
No 7
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.58 E-value=1.4e-05 Score=70.57 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=55.6
Q ss_pred cceEEEEEEeccccCCCCCC-CcceeeeecCCCCCCCcccccc------------ceEEEEEeCCceeeeechh------
Q psy13676 38 AMFTLSGFISSAIHGHGRST-ADRQFYFVNSRPCEPSKVSGQA------------EGFIIVKYDSDLFIIDQHA------ 98 (200)
Q Consensus 38 ~~~~v~G~is~~~~g~gRs~-~Drq~~~INkrp~~~~Kv~gq~------------~~yIla~~~~~L~lIDqHA------ 98 (200)
..++|+|+|+.|.. +|+. .++||+|+|+|++..+.+.+.+ .+++++.+.-+.-.+|.|+
T Consensus 234 ~~~~v~G~i~~p~~--~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~e 311 (333)
T 1b63_A 234 GDLTLRGWVADPNH--TTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHE 311 (333)
T ss_dssp TTEEEEEEEECGGG--CCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCC
T ss_pred CCEEEEEEEEcCcc--ccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCE
Confidence 56899999999984 5777 8999999999999987665443 2456777777777888887
Q ss_pred ---hhHHHHHHHHhhh
Q psy13676 99 ---TDEKYNFETLQKT 111 (200)
Q Consensus 99 ---AhERIlyE~L~~~ 111 (200)
.+|+.+++.+...
T Consensus 312 v~f~~~~~v~~~i~~~ 327 (333)
T 1b63_A 312 VRFHQSRLVHDFIYQG 327 (333)
T ss_dssp CEETTHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHH
Confidence 6677777766543
No 8
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=38.16 E-value=2.7 Score=35.41 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=5.9
Q ss_pred cCHHHHHHHHhhH
Q psy13676 127 LTKINQCILKDNL 139 (200)
Q Consensus 127 Ls~~e~~ll~e~~ 139 (200)
+.+.|.+.+....
T Consensus 90 V~~~dl~~F~~~Y 102 (232)
T 1914_A 90 VSSKEVNKFQMAY 102 (232)
T ss_dssp EETTSHHHHHHHH
T ss_pred ECHHHHHHHHHHH
Confidence 3444455544433
No 9
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=33.07 E-value=35 Score=29.41 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=33.5
Q ss_pred cccccc-ceEEEEEeCCceeeeechhhhHHHHHHHHhhh
Q psy13676 74 KVSGQA-EGFIIVKYDSDLFIIDQHATDEKYNFETLQKT 111 (200)
Q Consensus 74 Kv~gq~-~~yIla~~~~~L~lIDqHAAhERIlyE~L~~~ 111 (200)
.++|.+ ..+.+++.+..||++|..+.-+-.-|...+.+
T Consensus 62 tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~ 100 (284)
T 3rbn_A 62 SFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYD 100 (284)
T ss_dssp EEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHS
T ss_pred eEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHH
Confidence 466777 67889999999999999999999999998887
No 10
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=20.81 E-value=67 Score=28.23 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=24.1
Q ss_pred cceEEEEEEeccccCCCCCCCcceeeeecCCCCCC
Q psy13676 38 AMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEP 72 (200)
Q Consensus 38 ~~~~v~G~is~~~~g~gRs~~Drq~~~INkrp~~~ 72 (200)
..+.|+|.++-+ ++..+.++.|+|+++...
T Consensus 235 ~~i~ve~a~~~~-----~~~~~~~~sFVN~i~t~~ 264 (369)
T 3cwv_A 235 DGLRVQCALQWC-----EDEDSTLLSFANAVRTVR 264 (369)
T ss_dssp TTEEEEEEEEEB-----SSSCCEEEEEETTEECTT
T ss_pred CCEEEEEEEEec-----CCCCeeEEEEECCEEeCC
Confidence 357899998865 456788999999999875
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=20.67 E-value=55 Score=31.03 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=27.1
Q ss_pred cceEEEEEEeccccC----CCCCCCcceeeeecCCCCC
Q psy13676 38 AMFTLSGFISSAIHG----HGRSTADRQFYFVNSRPCE 71 (200)
Q Consensus 38 ~~~~v~G~is~~~~g----~gRs~~Drq~~~INkrp~~ 71 (200)
+.+.+.|++..|... ..|+..+++++|+|++.+.
T Consensus 270 g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~ 307 (624)
T 2ioq_A 270 GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIM 307 (624)
T ss_dssp SSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEE
T ss_pred ceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEee
Confidence 357789999999744 3477889999999998874
No 12
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=20.15 E-value=74 Score=28.13 Aligned_cols=31 Identities=10% Similarity=-0.139 Sum_probs=24.2
Q ss_pred cceEEEEEEeccccCCCCCCCcceeeeecCCCCCC
Q psy13676 38 AMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEP 72 (200)
Q Consensus 38 ~~~~v~G~is~~~~g~gRs~~Drq~~~INkrp~~~ 72 (200)
..+.|+|.++-| .++..+.++.|+|+++...
T Consensus 245 ~~~~ve~a~~~~----~~~~~~~~~sFvN~i~t~~ 275 (390)
T 1s16_A 245 DTEAVDWALLWL----PEGGELLTESYVNLIPTMQ 275 (390)
T ss_dssp SSEEEEEEEEEC----TTCCCCCEEEEETTEECTT
T ss_pred CCEEEEEEEEec----cCCCCceEEEEECCEecCC
Confidence 357899998876 3456788999999998864
Done!