RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13676
(200 letters)
>gnl|CDD|214857 smart00853, MutL_C, MutL C terminal dimerisation domain. MutL and
MutS are key components of the DNA repair machinery that
corrects replication errors. MutS recognises mispaired
or unpaired bases in a DNA duplex and in the presence of
ATP, recruits MutL to form a DNA signaling complex for
repair. The N terminal region of MutL contains the
ATPase domain and the C terminal is involved in
dimerisation.
Length = 140
Score = 76.2 bits (188), Expect = 5e-18
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 77 GQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTV-IKSQKLVVPQNLHLTKINQCI 134
GQ A +I+ + + L+++DQHA E+ +E L K ++SQ L++P L L+ +
Sbjct: 3 GQVAGTYILAEREDGLYLLDQHAAHERILYEQLLKQAGGLESQPLLIPVRLELSPQEAAL 62
Query: 135 LKDNLPVFYKNGFEFRI 151
L+++L + + GFE I
Sbjct: 63 LEEHLELLRQLGFELEI 79
>gnl|CDD|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain. MutL and
MutS are key components of the DNA repair machinery that
corrects replication errors. MutS recognises mispaired
or unpaired bases in a DNA duplex and in the presence of
ATP, recruits MutL to form a DNA signaling complex for
repair. The N terminal region of MutL contains the
ATPase domain and the C terminal is involved in
dimerisation.
Length = 144
Score = 66.1 bits (162), Expect = 3e-14
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 GQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTT--VIKSQKLVVPQNLHLTKINQC 133
GQ +I+ + + L+++DQHA E+ +E L+ +SQ L++P L L+
Sbjct: 7 GQVHGTYILAENEDGLYLVDQHAAHERILYEKLKSKLKEGGQSQPLLIPLTLELSPEEAA 66
Query: 134 ILKDNLPVFYKNGFEF 149
+L+++ + + GFE
Sbjct: 67 LLEEHKELLARLGFEL 82
>gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like:
transducer domain, having a ribosomal S5 domain 2-like
fold, found in proteins similar to human PSM2 (hPSM2).
hPSM2 belongs to the DNA mismatch repair
(MutL/MLH1/PMS2) family. This transducer domain is
homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes. Included in this group are
proteins similar to yeast PMS1. The yeast MLH1-PMS1 and
the human MLH1-PMS2 heterodimers play a role in
meiosis. hMLH1-hPMS2 also participates in the repair of
all DNA mismatch repair (MMR) substrates. Cells lacking
hPMS2 have a strong mutator phenotype and display
microsatellite instability (MSI). Mutation in hPMS2
causes predisposition to HPNCC and Turcot syndrome.
Length = 142
Score = 65.8 bits (161), Expect = 5e-14
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 8 ISQLINIIPITQSSPDASLLEEFRIPPD-ITAMFTLSGFISSAIHGHGRSTADRQFYFVN 66
+ +IPI EE D + ++G+IS HG GRS++DRQF+++N
Sbjct: 12 GKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYIN 71
Query: 67 SRPCEPSKVS 76
RP + KV+
Sbjct: 72 GRPVDLKKVA 81
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA
replication, recombination, and repair].
Length = 638
Score = 68.1 bits (167), Expect = 1e-13
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKT--TVIKSQKLVVPQNLHLTKI 130
+ GQ +I+ +++ L ++DQHA E+ +E L+ V + Q L++P L L+
Sbjct: 453 EAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLELSPE 512
Query: 131 NQCILKDNLPVFYKNGFEF 149
+L+++ K GFE
Sbjct: 513 EADVLEEHKEELEKLGFEI 531
Score = 30.4 bits (69), Expect = 0.69
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRP 69
LSG++S R++ D Q+ FVN RP
Sbjct: 235 LRLSGYVSLPEFT--RASRDYQYLFVNGRP 262
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed.
Length = 617
Score = 48.3 bits (116), Expect = 8e-07
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 77 GQAEG-FIIVKYDSDLFIIDQHATDEKYNFETLQ---KTTVIKSQKLVVPQNLHLTKINQ 132
GQ G +I+ + + L+++DQHA E+ +E L+ + SQ L++P L L++
Sbjct: 435 GQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPLVLELSEDEA 494
Query: 133 CILKDNLPVFYKNGFEF 149
L+++ + + G E
Sbjct: 495 DRLEEHKELLARLGLEL 511
Score = 32.9 bits (76), Expect = 0.11
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 40 FTLSGFISS-AIHGHGRSTADRQFYFVNSRP 69
LSG++ + R+ D Q+ FVN R
Sbjct: 230 LRLSGYVGLPTLS---RANRDYQYLFVNGRY 257
>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a
ribosomal S5 domain 2-like fold, conserved in the
C-terminal domain of DNA mismatch repair
(MutL/MLH1/PMS2) family. This transducer domain is
homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes. Included in this group are
proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and
E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1
and MLH3. These three complexes have distinct functions
in meiosis. hMLH1-hPMS2 also participates in the repair
of all DNA mismatch repair (MMR) substrates. Roles for
hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been
established. Cells lacking either hMLH1 or hPMS2 have a
strong mutator phenotype and display microsatellite
instability (MSI). Mutation in hMLH1 causes
predisposition to HNPCC, Muir-Torre syndrome and Turcot
syndrome (HNPCC variant). Mutation in hPMS2 causes
predisposition to HPNCC and Turcot syndrome. Mutation
in hMLH1 accounts for a large fraction of HNPCC
families. There is no convincing evidence to support
hPMS1 having a role in HNPCC predisposition. It has
been suggested that hMLH3 may be a low risk gene for
colorectal cancer; however there is little evidence to
support it having a role in classical HNPCC. It has
been suggested that during initiation of DNA mismatch
repair in E. coli, the mismatch recognition protein
MutS recruits MutL in the presence of ATP. The
MutS(ATP)-MutL ternary complex formed, then recruits
the latent endonuclease MutH.
Length = 122
Score = 45.6 bits (109), Expect = 1e-06
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVS 76
F +SG+IS GRS+ DRQF FVN RP +S
Sbjct: 27 FRISGYISKP--DFGRSSKDRQFLFVNGRPVRDKLLS 61
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 46.5 bits (111), Expect = 3e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +KK+K+K+K K KK+ + K KR
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 44.2 bits (105), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + K KK K+ +KK+K+K+K K KKR
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 44.2 bits (105), Expect = 2e-05
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK+K+K+K K KK+ + K K+R
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 43.0 bits (102), Expect = 5e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S+K K+ +KK+K+K+K K KK+ + I K+
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 42.2 bits (100), Expect = 7e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K+K+K+K K KK+ + K K++K
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 41.9 bits (99), Expect = 9e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK+K+K+K K KK+ + K K+++
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S KK K KK K+ +KK+K+K+K +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G KK K+ +KK+K+K+K K KK+ +
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T + KK K+ +KK+K+K+K K KK+
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRH 416
Score = 40.7 bits (96), Expect = 3e-04
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K+K+K K KK+ + K K++K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 39.9 bits (94), Expect = 4e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G + + K+ +KK+K+K+K K KK+ + +
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 39.9 bits (94), Expect = 5e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K+K+K K KK+ + K K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 38.8 bits (91), Expect = 0.001
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+KK K KK K+ +KK+K+K++ + K+H
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRH 416
Score = 38.8 bits (91), Expect = 0.001
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++K+K K KK+ + K K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 35.7 bits (83), Expect = 0.011
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKK 190
++K K KK+ + K K++K
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.9 bits (81), Expect = 0.019
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ +KK K KK K+ +KK+K++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEK 407
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 43.3 bits (103), Expect = 1e-05
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYI--FK 197
K +KK +K K K +KKK KK++ K RL++ FK
Sbjct: 72 EKAEKKAEKAKAKAEKKKAKKEEPKPRLFVLDFK 105
Score = 34.8 bits (81), Expect = 0.011
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
KK+ K +K +KK +K K K +KK+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKA 90
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 44.2 bits (105), Expect = 1e-05
Identities = 16/27 (59%), Positives = 25/27 (92%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+++KK +K+KKKKK+KKK KK+KK+
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/27 (59%), Positives = 25/27 (92%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK+++KK +K+KKKKK+KKK KK+K+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 42.6 bits (101), Expect = 5e-05
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R++KK +K+KKKKK+KKK KK+KKK R
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 42.6 bits (101), Expect = 5e-05
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++KK +K+KKKKK+KKK KK+KKK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 41.9 bits (99), Expect = 1e-04
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
KK +K+KKKKK+KKK KK+KKK +K
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK +K+KKKKK+KKK KK+KKK ++
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.5 bits (98), Expect = 1e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KKK+++KK +K+KKKKK+KKK KKR
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKR 408
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K KKK+++KK +K+KKKKK+KKK +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 35.7 bits (83), Expect = 0.010
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+K K KKK+++KK +K+KKKKKR
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKR 401
Score = 35.3 bits (82), Expect = 0.016
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K KKK+++KK +K+KKKKK+K+
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRKK 403
Score = 34.9 bits (81), Expect = 0.017
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++K K KKK+++KK +K+KKKKK++
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRK 402
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 162 DGTSRKKKKKKKKKKKKKKKK 182
+KK+KKK KK+KKK +K
Sbjct: 394 KRKKKKKRKKKGKKRKKKGRK 414
Score = 27.2 bits (61), Expect = 6.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ ++ K+K K KKK+++KK +KR
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKR 395
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 41.4 bits (97), Expect = 7e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G +K KKKK + K++KKKKK+KKKKKKR
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 39.8 bits (93), Expect = 2e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G KK KKKK + K++KKKKK+KKKKK+
Sbjct: 136 GLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 33.6 bits (77), Expect = 0.028
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KK KKKK + K++KKKKK+KK+
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Score = 31.7 bits (72), Expect = 0.13
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
D K +KK KKKK + K++KKKKK+K+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKK 163
Score = 26.7 bits (59), Expect = 7.0
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 167 KKKKKKKKKKKKKKKKK 183
K++KKKKK+KKKKKK+
Sbjct: 153 KERKKKKKEKKKKKKRH 169
Score = 26.7 bits (59), Expect = 7.0
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 168 KKKKKKKKKKKKKKKKK 184
K++KKKKK+KKKKKK+
Sbjct: 153 KERKKKKKEKKKKKKRH 169
Score = 26.3 bits (58), Expect = 8.3
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 162 DGTSRKKKKKKKKKKKKKK 180
D RKKKKK+KKKKKK+
Sbjct: 151 DDKERKKKKKEKKKKKKRH 169
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 42.1 bits (100), Expect = 8e-05
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYI--FK 197
K K +KKK+K++ K K K K RL++ FK
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKPRLFVLDFK 98
Score = 26.7 bits (60), Expect = 9.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 166 RKKKKKKKKKKKKKKKKK 183
+KK+K++ K K K K +
Sbjct: 74 KKKEKQEAKAAKAKSKPR 91
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL. All proteins in
this family for which the functions are known are
involved in the process of generalized mismatch repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 312
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVS 76
L GFIS R + QF F+N RP E +
Sbjct: 235 LQLEGFISQPNVTRSRRSGW-QFLFINGRPVELKLLL 270
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 37.0 bits (86), Expect = 0.001
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K+KK+KKKKKKKKKKK KK KK+
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 37.0 bits (86), Expect = 0.002
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+++KK+KKKKKKKKKKK KK KKKK
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 35.8 bits (83), Expect = 0.003
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K+K K+KK+KKKKKKKKKKK KK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 35.4 bits (82), Expect = 0.005
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K+K K+KK+KKKKKKKKKKK KK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKK 129
Score = 35.0 bits (81), Expect = 0.007
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K+K K+KK+KKKKKKKKKKK K
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 34.3 bits (79), Expect = 0.015
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K+ K+K K+KK+KKKKKKKKKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKT 126
Score = 33.9 bits (78), Expect = 0.017
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ K+K K+KK+KKKKKKKKKKK +
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSK 128
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 36.4 bits (84), Expect = 0.002
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D +K KKKKKK KK KK KK KK
Sbjct: 89 PDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.8 bits (72), Expect = 0.074
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 172 KKKKKKKKKKKKKKKKKKKKR 192
K KKKKKK KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 30.6 bits (69), Expect = 0.24
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 173 KKKKKKKKKKKKKKKKKKKRL 193
K KKKKKK KK KK KK +
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 27.9 bits (62), Expect = 1.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKK 182
+KK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein,
C-terminal domain. This family represents the
C-terminal domain of the mutL/hexB/PMS1 family. This
domain has a ribosomal S5 domain 2-like fold.
Length = 119
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRP 69
LSGFIS RS D Q+ FVN RP
Sbjct: 23 LRLSGFISKP--ELSRSNRDYQYLFVNGRP 50
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having
a ribosomal S5 domain 2-like fold, conserved in the
C-terminal domain of type II DNA topoisomerases (Topo
II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins.
This transducer domain is homologous to the second
domain of the DNA gyrase B subunit, which is known to
be important in nucleotide hydrolysis and the
transduction of structural signals from ATP-binding
site to the DNA breakage/reunion regions of the
enzymes. The GyrB dimerizes in response to ATP binding,
and is homologous to the N-terminal half of eukaryotic
Topo II and the ATPase fragment of MutL. Type II DNA
topoisomerases catalyze the ATP-dependent transport of
one DNA duplex through another, in the process
generating transient double strand breaks via covalent
attachments to both DNA strands at the 5' positions.
Included in this group are proteins similar to human
MLH1 and PMS2. MLH1 forms a heterodimer with PMS2
which functions in meiosis and in DNA mismatch repair
(MMR). Cells lacking either hMLH1 or hPMS2 have a
strong mutator phenotype and display microsatellite
instability (MSI). Mutation in hMLH1 accounts for a
large fraction of Lynch syndrome (HNPCC) families.
Length = 107
Score = 35.7 bits (83), Expect = 0.003
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSK 74
F + G IS GRS+ DRQF FVN RP
Sbjct: 27 FRVEGAISYP--DSGRSSKDRQFSFVNGRPVREGG 59
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KK+ K++KKK+KKKKKKK KK KK
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 35.0 bits (81), Expect = 0.007
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
T++K+ K++KKK+KKKKKKK KK KK
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 33.9 bits (78), Expect = 0.018
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
+K KK+ K++KKK+KKKKKKK KK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 33.9 bits (78), Expect = 0.020
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K KK+ K++KKK+KKKKKKK KK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 33.9 bits (78), Expect = 0.022
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKR 192
KK+ K++KKK+KKKKKKK KK +
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNK 108
Score = 33.1 bits (76), Expect = 0.033
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R K++KKK+KKKKKKK KK KK++K
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 31.2 bits (71), Expect = 0.15
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+KKK+KKKKKKK KK KK++K+ +
Sbjct: 90 RQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 30.8 bits (70), Expect = 0.24
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+K ++K KK+ K++KKK+KKKKK+
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Score = 30.4 bits (69), Expect = 0.30
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK ++K KK+ K++KKK+KKKKKKK
Sbjct: 77 RKDEEKTAKKRAKRQKKKQKKKKKKKA 103
Score = 30.4 bits (69), Expect = 0.32
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KKK+KKKKKKK KK KK++K+ K
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 28.9 bits (65), Expect = 0.95
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+KK+K ++K KK+ K++KKK+KKK+ KK
Sbjct: 73 EEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KK+KKKKKKK KK KK++K+ K
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K+KKKKKKK KK KK++K+ K
Sbjct: 93 KKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 26.2 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K+++KK+K ++K KK+ K++KKK
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKK 94
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 36.2 bits (84), Expect = 0.005
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++KK KK+K + K KKKKKKKKKK
Sbjct: 164 KKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 34.3 bits (79), Expect = 0.023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + KK+KK KK+K + K KKKKKKKK+
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 33.9 bits (78), Expect = 0.032
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K+KKKKK+ KK+KK+KK KK+K + KK
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Score = 33.5 bits (77), Expect = 0.033
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+KK KK+K + K KKKKKKKKK+
Sbjct: 165 KEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 33.5 bits (77), Expect = 0.035
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++KK+KKKKK+ KK+KK+KK KK+K
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 32.0 bits (73), Expect = 0.12
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+++KK+KKKKK+ KK+KK+KK KK+
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 30.5 bits (69), Expect = 0.41
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ ++++KK+KKKKK+ KK+KK+KK +
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
TS K+ K +K+ + ++++KK+KKKKK
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKKK 161
Score = 28.1 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 25/29 (86%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T++ +K+ + ++++KK+KKKKK+ KK+K+
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKK 168
Score = 28.1 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+ + ++++KK+KKKKK+ KK+KK
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 28.1 bits (63), Expect = 2.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +K+ + ++++KK+KKKKK+ K+
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
Score = 27.8 bits (62), Expect = 2.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ + + K +K+ + ++++KK+KKKKK+ KK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEK 167
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 37.0 bits (86), Expect = 0.005
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 161 GDGTSRKKKKKKKKKKKKKK----KKKKKKKKKKKRLYI 195
GDG ++KKK+K+K++ K KK+K+K KK K + I
Sbjct: 623 GDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVII 661
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 36.4 bits (85), Expect = 0.006
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
N RKK +KK++K +KK +K++ +K K
Sbjct: 401 GENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 34.1 bits (79), Expect = 0.033
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
RKK++K +KK +K++ +K KKK +
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 32.6 bits (75), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
NG+ + ++KK +KK++K +KK +K++ +K
Sbjct: 400 EGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA 434
Score = 32.2 bits (74), Expect = 0.16
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
++KK +KK++K +KK +K++ +K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKA 433
Score = 32.2 bits (74), Expect = 0.16
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
S ++KK +KK++K +KK +K++ +K
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEKEEAEKAAA 435
Score = 32.2 bits (74), Expect = 0.16
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KK +KK++K +KK +K++ +K +
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
RK +KK +K++ +K KKK + K
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ +K++ +K KKK + KK K
Sbjct: 424 KAEKEEAEKAAAKKKAEAAAKKAKGP 449
Score = 28.4 bits (64), Expect = 2.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K +KK +K++ +K KKK + +
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 28.0 bits (63), Expect = 4.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK +K++ +K KKK + KK +
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 27.2 bits (61), Expect = 6.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
+K++ +K KKK + KK K
Sbjct: 426 EKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 26.8 bits (60), Expect = 9.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
K KKK + KK K + KK
Sbjct: 431 EKAAAKKKAEAAAKKAKGPDGETKKV 456
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 34.2 bits (79), Expect = 0.006
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
D K ++ ++ ++KKKKKKK KKK + +I +K
Sbjct: 23 DDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRK 60
Score = 30.7 bits (70), Expect = 0.13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S++ ++KKKKKKK KKK K+ +KK++
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 30.0 bits (68), Expect = 0.20
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 153 MMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKK----KKKKKR 192
+ R ++ ++KKKKKKK KKK K +KK++
Sbjct: 21 EEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQM 64
Score = 28.4 bits (64), Expect = 0.65
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
++KKKKKKK KKK K+ +KK++ R
Sbjct: 32 VRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRR 66
Score = 26.1 bits (58), Expect = 4.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 159 RNGDGTSRKKKKKKKKKKK------KKKKKKKKKKKKKKR 192
R RKKKKKKK KKK +KK++ +++ K+ K
Sbjct: 34 RISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKP 73
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 36.4 bits (85), Expect = 0.007
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G + KK KK +K +KK++++KK+KKKK
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAF 435
Score = 35.3 bits (82), Expect = 0.015
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
T KK KK KK +K +KK++++KK+K+ F
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAG 437
Score = 33.0 bits (76), Expect = 0.089
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +KK++++KK+KKKK KKK++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 33.0 bits (76), Expect = 0.091
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K +KK++++KK+KKKK KKK
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKK 440
Score = 32.2 bits (74), Expect = 0.15
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+++KK+KKKK KKK+++++++K
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 32.2 bits (74), Expect = 0.16
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K +KK++++KK+KKKK KKK+
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
KK++++KK+KKKK KKK+++++
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +K +KK++++KK+KKKK K+
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 31.8 bits (73), Expect = 0.20
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +K +KK++++KK+KKKK KK+
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKK 440
Score = 31.0 bits (71), Expect = 0.34
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KK++++KK+KKKK KKK++++
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 31.0 bits (71), Expect = 0.37
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K++++KK+KKKK KKK++++++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 30.7 bits (70), Expect = 0.48
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+KKKK KKK+++++++K+KK+
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 30.3 bits (69), Expect = 0.58
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+++++KK+KKKK KKK+++++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEE 447
Score = 29.5 bits (67), Expect = 1.0
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++KKKK KKK+++++++K+KK++
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 29.5 bits (67), Expect = 1.3
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + KKKK KKK+++++++K+KK++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 28.3 bits (64), Expect = 3.1
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KK KKK+++++++K+KK+++K+
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 33.7 bits (78), Expect = 0.007
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++K+ +K + K+ KK+ KK +KKKR IFK+
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKR 37
Score = 26.8 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
R KK+ KK +KKK+K K+ +K
Sbjct: 16 RAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 26.4 bits (59), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ KK+ KK +KKK+K K+ +K
Sbjct: 15 KRAKKRAAKKAARKKKRKLIFKRAEK 40
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 36.3 bits (85), Expect = 0.009
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K KK K +K K+ Y+ +
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQYVASE 853
Score = 35.9 bits (84), Expect = 0.009
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D ++ KK K +K K++ +K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 34.4 bits (80), Expect = 0.034
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KK K +K K++ +K K
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 34.4 bits (80), Expect = 0.035
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KK K +K K++ +K K
Sbjct: 834 GKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 34.0 bits (79), Expect = 0.049
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
D +K K +K K++ +K K
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.6 bits (78), Expect = 0.060
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K KK K +K K++
Sbjct: 813 LLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 32.8 bits (76), Expect = 0.11
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK K +K K++ +K +
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 32.5 bits (75), Expect = 0.13
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +K + K KK K R
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSR 843
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 35.9 bits (83), Expect = 0.011
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
D R +KK K K KK +K KK K +++
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 30.9 bits (70), Expect = 0.45
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKK--KKKKKR 192
R K KK +K KK K +K K KR
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR 805
Score = 29.3 bits (66), Expect = 1.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKK-----KKKKKKKKKR 192
F + + KK +K KK K +K K K+ KKK
Sbjct: 769 FRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 34.6 bits (80), Expect = 0.019
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K K KK K K ++K+K K++K++K L
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 33.1 bits (76), Expect = 0.057
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K K KK K K ++K+K K++K+++
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 32.3 bits (74), Expect = 0.11
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K KK K K ++K+K K++K++K R
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 31.9 bits (73), Expect = 0.13
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K K K K KK K K ++K+K KR
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKRE 75
Score = 31.9 bits (73), Expect = 0.17
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ KK K K ++K+K K++K++K + L
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 31.6 bits (72), Expect = 0.21
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K K K KK K K ++K+K K+++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 30.8 bits (70), Expect = 0.40
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
KK K K ++K+K K++K++K ++
Sbjct: 59 KKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 30.4 bits (69), Expect = 0.45
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+++K K K K KK K K ++K++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 30.4 bits (69), Expect = 0.51
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+++K K K K KK K K +++
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 30.0 bits (68), Expect = 0.59
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K KK K K ++K+K K++K
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKREKE 77
Score = 29.6 bits (67), Expect = 0.76
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K+++K K K K KK K K ++K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 29.6 bits (67), Expect = 0.77
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K K K K KK K K ++K+K
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 29.6 bits (67), Expect = 0.93
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKK 189
+K K +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAK 214
Score = 29.6 bits (67), Expect = 0.98
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRL 193
+K K +K K KKKK K K +L
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKL 215
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKK 190
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKK 191
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 29.2 bits (66), Expect = 1.0
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
K K KKKK K K K + +
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 28.5 bits (64), Expect = 2.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
+ ++K+++K K K K KK K K
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAK 65
Score = 28.5 bits (64), Expect = 2.2
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDD 223
Score = 28.5 bits (64), Expect = 2.3
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+ K KKKK K K K Y
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDDDDDY 227
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K +K K KKKK K K K
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGG 219
Score = 27.3 bits (61), Expect = 5.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ ++K+++K K K K KK K ++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKI 66
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 32.7 bits (75), Expect = 0.021
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T KKKKKKKKKK + K KK
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKK 45
Score = 31.6 bits (72), Expect = 0.064
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KKKKKKKKKK + K KK
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 31.2 bits (71), Expect = 0.068
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KKKKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKA 46
Score = 27.7 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATA 41
Score = 26.9 bits (60), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKK 188
D +KKKKKKKK + K KK
Sbjct: 21 DLVKKKKKKKKKKAEDTAATAKAKKAT 47
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 35.0 bits (80), Expect = 0.021
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
GD + +KK KK KKK+KK+K+K++ K KKK + FK
Sbjct: 189 KGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 33.5 bits (76), Expect = 0.065
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
S+K KKK+KK+K+K++ K KKK+ + + +
Sbjct: 199 SKKPKKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Score = 32.0 bits (72), Expect = 0.19
Identities = 8/27 (29%), Positives = 21/27 (77%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +++ +K K++KKK++K+K+ +++
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.0 bits (72), Expect = 0.22
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ T + K KKKK++K+K++KKKKKK R
Sbjct: 272 EETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 31.2 bits (70), Expect = 0.33
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ + KK K KKKK++K+K++KKKKKK
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHH 300
Score = 30.8 bits (69), Expect = 0.52
Identities = 8/27 (29%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+ +++ +K K++KKK++K+K+ +++
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 30.4 bits (68), Expect = 0.64
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
D + + KK K KKKK++K+K++KKKKKK
Sbjct: 265 EPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 30.4 bits (68), Expect = 0.72
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
S K KKKK++K+K++KKKKKK +
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 29.6 bits (66), Expect = 1.3
Identities = 8/27 (29%), Positives = 21/27 (77%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+++ +K K++KKK++K+K+ +++ L
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHSL 117
Score = 29.3 bits (65), Expect = 1.5
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ +++ +K K++KKK++K+K+ +R
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRR 112
Score = 28.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KKKK++K+K++KKKKKK +
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHRCHHS 306
Score = 27.7 bits (61), Expect = 4.1
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++ +++ +K K++KKK++K+K+ R
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGR 111
Score = 27.7 bits (61), Expect = 4.3
Identities = 8/25 (32%), Positives = 22/25 (88%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKR 192
+++++ +++ +K K++KKK++K+KR
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKR 109
Score = 27.7 bits (61), Expect = 5.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KK++K+K++KKKKKK +
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
Score = 27.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
+KK+KK+K+K++ K KKK+ + K L +
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLAL 232
Score = 27.3 bits (60), Expect = 7.1
Identities = 7/25 (28%), Positives = 22/25 (88%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
+++++ +++ +K K++KKK++K+K+
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKR 109
Score = 27.0 bits (59), Expect = 7.8
Identities = 8/34 (23%), Positives = 25/34 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
K +++++ +++ +K K++KKK++K++ + H+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 34.4 bits (79), Expect = 0.038
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
S K K K KKK K K KK KK+ LY
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYT 789
Score = 31.3 bits (71), Expect = 0.30
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KK K KKK K K K KKK K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSK 773
Score = 31.3 bits (71), Expect = 0.32
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T +KK K KKK K K K KKK +
Sbjct: 745 TPYEKKTKAKKKSASTKGKAAKTVKKKSK 773
Score = 31.3 bits (71), Expect = 0.34
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T KKK K K K KKK K K KK
Sbjct: 751 TKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 30.9 bits (70), Expect = 0.47
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K K KKK K K K KKK K + K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 30.6 bits (69), Expect = 0.66
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
++KK K K K KKK K K KK
Sbjct: 751 TKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
GT + +KK K KKK K K K K+
Sbjct: 741 GTPKTPYEKKTKAKKKSASTKGKAAKTVKK 770
Score = 28.2 bits (63), Expect = 3.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+KK K KKK K K K KK+ K T
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKT 779
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 32.6 bits (75), Expect = 0.047
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R K++ +K+K+ +K ++KK K+++K++
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 31.9 bits (73), Expect = 0.077
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R ++++ K++ +K+K+ +K ++KK KR
Sbjct: 97 RLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 31.5 bits (72), Expect = 0.14
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+++ K++ +K+K+ +K ++KK K++
Sbjct: 99 RRERTKERAEKEKRTRKNREKKFKRR 124
Score = 31.1 bits (71), Expect = 0.14
Identities = 10/36 (27%), Positives = 26/36 (72%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
LR ++++ +K+K+ +K ++KK K+++K+K++
Sbjct: 95 ALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.9 bits (68), Expect = 0.35
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
KK++ + ++++ K++ +K+K+ R KK
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTRKNREKK 120
Score = 28.0 bits (63), Expect = 2.1
Identities = 5/29 (17%), Positives = 20/29 (68%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
R + ++++ K++ +K+K+ +K +++ +
Sbjct: 93 RIALRLRRERTKERAEKEKRTRKNREKKF 121
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 34.1 bits (78), Expect = 0.051
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKK 188
SRKKKKKKK K+KKKKK ++ K+
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQ 706
Score = 32.9 bits (75), Expect = 0.098
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLY 194
+KKKKKKK K+KKKKK ++ K+++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIH 708
Score = 31.4 bits (71), Expect = 0.34
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
+KKKKKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 31.0 bits (70), Expect = 0.48
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKK 191
+KKKKKKK K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.2 bits (68), Expect = 0.77
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKK 187
G+ +KKKKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 32.7 bits (75), Expect = 0.063
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K K KKKK KKKK K K KK KK
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 32.4 bits (74), Expect = 0.096
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S+KKK K K KK KK K +KK +K+
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 32.4 bits (74), Expect = 0.097
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
K KKKK KKKK K K KK KK K
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 31.6 bits (72), Expect = 0.16
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K K KKKK KKKK K K KK KK
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 31.2 bits (71), Expect = 0.24
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
KKKK K K KK KK K +KK +K
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 30.8 bits (70), Expect = 0.29
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KKK KKKK K K KK KK K +K
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEK 112
Score = 30.8 bits (70), Expect = 0.30
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K KKKK K K KK KK K +KK
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 30.8 bits (70), Expect = 0.30
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+K K KKKK KKKK K K KK +
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDK 105
Score = 30.4 bits (69), Expect = 0.35
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KKKK KKKK K K KK KK K
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 30.4 bits (69), Expect = 0.39
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KKKK K K KK KK K +KK
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 28.9 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K KK KK K +KK +K+ + K + L
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDL 125
Score = 28.5 bits (64), Expect = 1.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K K KK KK K +KK +K+ + +L
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 28.5 bits (64), Expect = 1.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K K KK KK K +KK +K+ + K
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 27.7 bits (62), Expect = 3.2
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KK+ ++K+K K KKKK KKKK K K
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDK 99
Score = 27.7 bits (62), Expect = 3.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K+ ++K+K K KKKK KKKK K K
Sbjct: 74 VKKEYEEKQKWKWKKKKSKKKKDKDKD 100
Score = 26.6 bits (59), Expect = 7.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KK KK K +KK +K+ + K +
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLED 124
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 32.9 bits (75), Expect = 0.067
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
T+ +KKKK K KK K K KK + KKK + +
Sbjct: 87 TAVEKKKKGKSKKNKLKGKKDEDKKKAREGW 117
Score = 32.1 bits (73), Expect = 0.12
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
KKKK K KK K K KK + KKK ++ F
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGWNNF 120
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.8 bits (75), Expect = 0.067
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
RKKKK + K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 30.9 bits (70), Expect = 0.26
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+KKKK + K +K+ K+K +KK++
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 30.1 bits (68), Expect = 0.46
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KKK + K +K+ K+K +KKK
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 29.3 bits (66), Expect = 0.81
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+KK + K +K+ K+K +KKK +
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKINII 31
Score = 26.2 bits (58), Expect = 9.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 174 KKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+KKKK + K +K+ + KK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 33.0 bits (76), Expect = 0.068
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +++ KK++ +K+K ++++K K
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKP 140
Score = 31.8 bits (73), Expect = 0.14
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ KK++ +K+K ++++K K K R
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 31.8 bits (73), Expect = 0.16
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK++ +K+K ++++K K K ++
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 31.4 bits (72), Expect = 0.21
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ +++ KK++ +K+K ++++K +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 31.4 bits (72), Expect = 0.22
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
A R G K ++++K K K +KK+K + +K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 31.0 bits (71), Expect = 0.24
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+K ++++K K K +KK+K + ++
Sbjct: 128 KEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 31.0 bits (71), Expect = 0.28
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+ +K+K ++++K K K +KK++
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 31.0 bits (71), Expect = 0.29
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K++ +K+K ++++K K K +K+
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKK 146
Score = 30.7 bits (70), Expect = 0.32
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++K ++++K K K +KK+K + +K
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 29.5 bits (67), Expect = 0.99
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ KK++ +K+K ++++K K +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPK 141
Score = 29.1 bits (66), Expect = 1.2
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ ++ +++ KK++ +K+K +++R
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRER 136
Score = 28.4 bits (64), Expect = 2.1
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ ++++K K K +KK+K + +K +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 28.0 bits (63), Expect = 2.5
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++K K K +KK+K + +K + +
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 28.0 bits (63), Expect = 3.2
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++K K K +KK+K + +K + +
Sbjct: 131 APRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 27.6 bits (62), Expect = 4.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R++K K K +KK+K + +K + +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Score = 27.6 bits (62), Expect = 4.3
Identities = 4/27 (14%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + ++ +++ KK++ +K+K ++
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRE 135
Score = 27.6 bits (62), Expect = 4.3
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ K + ++ +++ KK++ +K+K R
Sbjct: 106 AKAKVQAQRAEQQAKKREAAGEKEKAPR 133
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 33.1 bits (76), Expect = 0.075
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
A + KKKK K+ K K KK K KK
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 31.9 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KK+K K++ KKKK K+ K K KK
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKK 274
Score = 31.9 bits (73), Expect = 0.19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ + KKKK K+ K K KK K K++
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 31.5 bits (72), Expect = 0.20
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K+K K++ KKKK K+ K K KK
Sbjct: 251 KRKSKEEIKKKKPKESKGVKALKKV 275
Score = 31.1 bits (71), Expect = 0.26
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
SR +KK+K K++ KKKK K+ K K
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 30.8 bits (70), Expect = 0.41
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K++ KKKK K+ K K KK K
Sbjct: 253 KSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 28.8 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ +KK+K K++ KKKK K+ K K L
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + + +KK+K K++ KKKK K+ K +
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVK 270
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 31.4 bits (72), Expect = 0.076
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 165 SRKKKKKKKKKKKKKKKKKKK--KKKKKKRL 193
SRKKK+KK+ K + K+ KK +++K R+
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKARV 90
Score = 29.1 bits (66), Expect = 0.43
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
R +KKK+KK+ K + K+ KK
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 33.2 bits (76), Expect = 0.079
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ K KK KKKKKKKKK++K +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELE 298
Score = 32.8 bits (75), Expect = 0.11
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
D + K KK KKKKKKKKK++K
Sbjct: 265 DYYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 32.4 bits (74), Expect = 0.13
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKK 186
D + K KK KKKKKKKKK++K
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 27.0 bits (60), Expect = 7.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KK++KKK+ ++KK +K+K
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKE 121
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 32.8 bits (75), Expect = 0.087
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R KK++ + ++KKK+KK K +++ +
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 32.8 bits (75), Expect = 0.11
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
L+ K K ++ KK++ + ++KKK+KK +
Sbjct: 353 LKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAK 387
Score = 32.0 bits (73), Expect = 0.16
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T K ++ KK++ + ++KKK+KK K +R
Sbjct: 362 TKAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 31.6 bits (72), Expect = 0.21
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K ++ KK++ + ++KKK+KK K
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 30.4 bits (69), Expect = 0.58
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ KK++ + ++KKK+KK K +++ L
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 30.1 bits (68), Expect = 0.73
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK++ + ++KKK+KK K +++ +
Sbjct: 370 KKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.1 bits (68), Expect = 0.76
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K K ++ KK++ + ++KKK+KK
Sbjct: 361 PTKAKPERDKKERPGRYRRKKKEKKAK 387
Score = 30.1 bits (68), Expect = 0.87
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ ++ KK++ + ++KKK+KK K ++R
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 28.5 bits (64), Expect = 2.5
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K++ + ++KKK+KK K +++ +
Sbjct: 369 DKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 28.5 bits (64), Expect = 2.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K K ++ KK++ + ++KKK +
Sbjct: 359 KPPTKAKPERDKKERPGRYRRKKKEKKAKSE 389
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.7 bits (75), Expect = 0.090
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+++ KKKK+ K K K+ KKKKKK
Sbjct: 80 REERLKKKKRVKTKAYKEPTKKKKKK 105
Score = 32.4 bits (74), Expect = 0.11
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R KKKK+ K K K+ KKKKKK
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTA 109
Score = 32.0 bits (73), Expect = 0.15
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++++ KKKK+ K K K+ KKKKK+
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKK 105
Score = 32.0 bits (73), Expect = 0.15
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
++ KKKK+ K K K+ KKKKKK
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 32.0 bits (73), Expect = 0.16
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
L+ + +KK+ K K K+ KKKKKK K
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 30.4 bits (69), Expect = 0.49
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KKKKK K K + KKK +R
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R K+++ ++KK + K +K+K+KKK+K L
Sbjct: 155 ERLKEREIRRKKIQAKARKRKEKKKEKEL 183
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
KKKKKK K K + KKK I T
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSERISWAPT 132
Score = 28.1 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+G +++++ KKKK+ K K K+ KKK+
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKK 103
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
T +KKKK K K + KKK ++ +
Sbjct: 99 TKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 26.6 bits (59), Expect = 8.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K+ +++++ KKKK+ K K KK
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKK 101
Score = 26.6 bits (59), Expect = 9.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KKKKKK K K + KK+
Sbjct: 97 EPTKKKKKKDPTAAKSPKAAAPRPKKK 123
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.9 bits (75), Expect = 0.10
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RKKKK++K K+K+ KK K +K+ K +L
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLY 194
++KKKK++K K+K+ KK K +K+
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKA 45
Score = 28.7 bits (64), Expect = 2.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T + ++KKKK++K K+K+ KK K +K
Sbjct: 14 TEEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 27.6 bits (61), Expect = 5.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
++ ++KKKK++K K+K+ KK K ++ K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.7 bits (75), Expect = 0.12
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K+ K++K+ +K KK+++KKKK+ ++L
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 31.2 bits (71), Expect = 0.40
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R+K++K+ K++K+ +K KK+++KKK+
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKE 582
Score = 30.8 bits (70), Expect = 0.56
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++K+ K++K+ +K KK+++KKKK+
Sbjct: 557 KEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K++K+ +K KK+++KKKK+ +K
Sbjct: 561 EALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+ K++K+ +K KK+++KKKK+ +K +K
Sbjct: 562 ALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 28.8 bits (65), Expect = 2.4
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
K++K+ +K KK+++KKKK+ +K ++ I
Sbjct: 563 LKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 28.5 bits (64), Expect = 2.7
Identities = 9/27 (33%), Positives = 23/27 (85%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++K++K+ K++K+ +K KK+++KK+
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKK 580
Score = 27.7 bits (62), Expect = 4.9
Identities = 7/26 (26%), Positives = 21/26 (80%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+++K++K+ K++K+ +K KK++++
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKK 579
>gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain,
having a ribosomal S5 domain 2-like fold, found in
proteins similar to Escherichia coli MutL. EcMutL
belongs to the DNA mismatch repair (MutL/MLH1/PMS2)
family. This transducer domain is homologous to the
second domain of the DNA gyrase B subunit, which is
known to be important in nucleotide hydrolysis and the
transduction of structural signals from the ATP-binding
site to the DNA breakage/reunion regions of the
enzymes. It has been suggested that during initiation
of DNA mismatch repair in E. coli, the mismatch
recognition protein MutS recruits MutL in the presence
of ATP. The MutS(ATP)-MutL ternary complex formed,
then recruits the latent endonuclease MutH. Prokaryotic
MutS and MutL are homodimers.
Length = 123
Score = 31.4 bits (72), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSR 68
LSG+I A+ RS AD Q+++VN R
Sbjct: 27 LRLSGWI--ALPTFARSQADIQYFYVNGR 53
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 30.9 bits (70), Expect = 0.13
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G KKKKKKKKKK K K++ +K+++++
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEK 45
Score = 30.5 bits (69), Expect = 0.14
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKR 192
K KK KKKKKKKKKK K K++
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVV 37
Score = 30.5 bits (69), Expect = 0.14
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
K KK KKKKKKKKKK K K++
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEV 36
Score = 30.5 bits (69), Expect = 0.17
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K K KK KKKKKKKKKK K K++
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEE 35
Score = 28.5 bits (64), Expect = 0.74
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
L+ +KKKKKKKKK K K++ +K++++K
Sbjct: 12 LKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKS 46
Score = 28.5 bits (64), Expect = 0.78
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
K K K KK KKKKKKKKKK K
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKS 32
Score = 25.8 bits (57), Expect = 6.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKR 192
K K K KK KKKKKKKKK+
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKK 29
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 30.7 bits (70), Expect = 0.14
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ K+K + KKKKK+K KKKR
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKR 60
Score = 29.1 bits (66), Expect = 0.55
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++K+ K+K + KKKKK+K
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKA 56
Score = 29.1 bits (66), Expect = 0.56
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+K + KKKKK+K KKK+
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKKRDE 62
Score = 28.8 bits (65), Expect = 0.61
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K+K + KKKKK+K KKK+
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKR 60
Score = 28.4 bits (64), Expect = 0.82
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
++K+ K+K + KKKKK+K K+
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKK 58
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++K+ K+K + KKKKK+K +
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAK 57
Score = 26.4 bits (59), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K + KKKKK+K KKK+ +
Sbjct: 38 KQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 26.4 bits (59), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K + KKKKK+K KKK+ +
Sbjct: 39 QKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase. Proteins of the
YlqF family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in all
eukaryotes as well as a phylogenetically diverse array
of bacteria (including gram-positive bacteria,
proteobacteria, Synechocystis, Borrelia, and
Thermotoga).
Length = 171
Score = 31.3 bits (72), Expect = 0.16
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
+F N +NG G + KK KK K+ +K K K + R +
Sbjct: 79 LFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMV 120
>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
oxidoreductase, homodimeric. This model represents a
single chain form of pyruvate:ferredoxin (or
flavodoxin) oxidoreductase. This enzyme may transfer
electrons to nitrogenase in nitrogen-fixing species.
Portions of this protein are homologous to gamma
subunit of the four subunit pyruvate:ferredoxin
(flavodoxin) oxidoreductase.
Length = 1165
Score = 32.4 bits (74), Expect = 0.17
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 2 GHVSLTISQLINIIPITQSSPDASLLEE---------FRIPPDITAMFTLSGFISSAIHG 52
HV+ S++ I PIT SS +++ F + M + +G + A+HG
Sbjct: 11 AHVAYAFSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAG-AAGAVHG 69
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.4 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKK 188
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 31.4 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKK 189
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 31.4 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKK 190
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 31.4 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKK 191
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 30.3 bits (69), Expect = 0.42
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKK 187
+KK KK KK+K+K++K+ +K
Sbjct: 12 VDKKKAKKAKKEKRKQRKQARKGA 35
Score = 29.9 bits (68), Expect = 0.67
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 173 KKKKKKKKKKKKKKKKKKKR 192
KKK KK KK+K+K++K+ ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARK 33
Score = 27.6 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKK 186
L+ G +K KK KK+K+K++K+ +K
Sbjct: 7 LKAGLVDKKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 31.8 bits (72), Expect = 0.22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ KK KK + K K K KK KKK
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKKG 171
Score = 31.0 bits (70), Expect = 0.37
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+ KK KK + K K K KK KKK
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKK 170
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KK + K K K KK KKK
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGS 172
Score = 28.7 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K K K KK KKK + K
Sbjct: 154 QSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 28.3 bits (63), Expect = 2.6
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+ + K K KK KKK + K
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
G S K K K KK KKK + K
Sbjct: 153 GQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K KK + K K K KK KKK
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSV 173
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 31.5 bits (72), Expect = 0.22
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
+++K+KKK K++KK K++K+K +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYG 124
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
++K+KKK K++KK K++K+K + Y +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYGY 125
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.6 bits (72), Expect = 0.25
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 131 NQCILKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ K+ L F + + T + D + KKK +KKKKKKK+KK+ K + +
Sbjct: 31 VLVLSKEILSTFSEEENKVA-TTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGET 89
Query: 191 KRLYIFKKHT 200
K FK
Sbjct: 90 KL--GFKTPK 97
Score = 28.9 bits (65), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KKKKKK+KK+ K + + K K K+
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KK+KK+ K + + K K KK KK
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 28.1 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KKKKK+KK+ K + + K K KK
Sbjct: 69 KSEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 27.8 bits (62), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S KKKKKKK+KK+ K + + K K + K
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTK 103
Score = 27.4 bits (61), Expect = 5.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKK---------KKKKKKKKKKKRLYIFKK 198
+ N +KKKKKKK+KK+ K K KK KK KK+ K
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.4 bits (71), Expect = 0.27
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T K+ K + K+++K+K++ K++KKK+
Sbjct: 92 TKPAKEPKNESGKEEEKEKEQVKEEKKKK 120
Score = 30.6 bits (69), Expect = 0.49
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + K+++K+K++ K++KKKKK+K K+
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 30.6 bits (69), Expect = 0.55
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
N G +K+K++ K++KKKKK+K K++ K ++
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 30.2 bits (68), Expect = 0.67
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+G ++K++ K++KKKKK+K K++ K +K
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 29.5 bits (66), Expect = 1.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ K + K+++K+K++ K++KKKK+
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK 121
Score = 29.5 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K++ K++KKKKK+K K++ K +K K
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 29.1 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
S K+++K+K++ K++KKKKK+K K++ + K+
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 28.7 bits (64), Expect = 2.2
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK K++ K+K+ K+K+K+K+KK ++
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 27.9 bits (62), Expect = 3.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KKKKK+K K++ K +K K++ K+K+
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 27.9 bits (62), Expect = 4.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ +K K++ K+K+ K+K+K+K+KK
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 27.5 bits (61), Expect = 4.6
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K++ K+K+ K+K+K+K+KK ++ +
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 27.5 bits (61), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R + KK KKK KKK+ +++K+++ R
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAR 201
Score = 27.5 bits (61), Expect = 5.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +K K++ K+K+ K+K+K+K+K+
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 27.2 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KKKKK+K K++ K +K K++ K+KR
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +K K++ K+K+ K+K+K+K+KK
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKV 154
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.7 bits (72), Expect = 0.27
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RK K K +K KKK K KKKKK L
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVL 143
Score = 30.6 bits (69), Expect = 0.52
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
FA + K K +K KKK K KKKKK
Sbjct: 106 FAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 28.6 bits (64), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ +K K K +K KKK K KKKK++
Sbjct: 108 GPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
>gnl|CDD|223789 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and
metabolism].
Length = 183
Score = 30.7 bits (70), Expect = 0.28
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 24 ASLLEEFRIPPDITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEP 72
A LE IP D+ A T GRS+ R V+ +P
Sbjct: 85 AVTLEYVEIPEDVAAFCT------------GRSSLARLGLIVHVGVIDP 121
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 29.5 bits (67), Expect = 0.29
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
R KK+KK +K K+ K +++ +++ Y
Sbjct: 27 RRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGY 59
Score = 25.7 bits (57), Expect = 6.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G +RK+KK ++ + KK+KK +K K+ K
Sbjct: 18 GLTRKRKKDRRNPRVKKRKKYEKAVKRLKS 47
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 30.4 bits (69), Expect = 0.30
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+ KKK KK K KK K KK+K + + F+ T
Sbjct: 3 PAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKT 40
Score = 29.3 bits (66), Expect = 0.82
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KKK KK K KK K KK+K R
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKRKVR 30
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.5 bits (71), Expect = 0.31
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
DG K KKKKKK K KKK KK K+
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 30.7 bits (69), Expect = 0.48
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G ++K KKKKKK K KKK KK KR
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 29.5 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ G+ +K KKKKKK K KKK KK K+
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 29.9 bits (68), Expect = 0.31
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
RK+++K +++++ K+ K K+++ +++L KK
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVA 37
Score = 28.4 bits (64), Expect = 0.96
Identities = 6/25 (24%), Positives = 20/25 (80%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K++K+++K +++++ K+ K K+++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREE 25
Score = 27.6 bits (62), Expect = 2.0
Identities = 5/25 (20%), Positives = 20/25 (80%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
+++K+++K +++++ K+ K K+++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREE 25
Score = 27.2 bits (61), Expect = 2.6
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K++K+++K +++++ K+ K KR I +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEK 29
Score = 26.5 bits (59), Expect = 3.9
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKR 192
K++K+++K +++++ K+ K K+
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE 24
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 31.1 bits (70), Expect = 0.32
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
L+N D + ++ ++ KK+K KK + +KK
Sbjct: 29 LKNEDCATPQENDEQNPGKKRKNNKKNRSRKK 60
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.1 bits (66), Expect = 0.43
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R K++++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.8 bits (60), Expect = 3.6
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLY 194
K++++K KKK KK + ++ KK+++
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.0 bits (58), Expect = 5.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKK 190
+++++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 30.8 bits (70), Expect = 0.46
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K +K K ++ +KK KK + K K LY
Sbjct: 348 AKGAQKVKNRRARKKAKKARLAKVAKALY 376
Score = 30.0 bits (68), Expect = 0.68
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++K K +K K ++ +KK KK RL K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
A L T++ +K K ++ +KK KK + K K
Sbjct: 339 AVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.8 bits (70), Expect = 0.49
Identities = 14/28 (50%), Positives = 24/28 (85%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
++K KKKKKK+KKK+++ K+++K R+ I
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 28.5 bits (64), Expect = 3.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 173 KKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+ KK+K KK+ K + L F K
Sbjct: 1563 ESDIKKRKNKKQYKSNTEAELDFFLKR 1589
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.7 bits (70), Expect = 0.54
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T+ K K KKK K + KK +K
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 30.3 bits (69), Expect = 0.63
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K KKK K + KK +KK
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 30.0 bits (68), Expect = 0.76
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T K K KKK K + KK
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 30.0 bits (68), Expect = 0.88
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K K K KKK K + K
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Score = 29.2 bits (66), Expect = 1.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S KKK K K K KKK K L KK
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKK 105
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D T KKK K K K KKK K
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D +K K K K KKK K +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D + KKK K K K KKK
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKL 96
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K KKK K + KK +KK
Sbjct: 83 AKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 28.8 bits (65), Expect = 2.2
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K KKK K + KK +KK
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 27.7 bits (62), Expect = 5.0
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ + KKK K K K KKK
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
Score = 27.7 bits (62), Expect = 5.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
KKK K + KK +KK K Y+
Sbjct: 90 APAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 26.9 bits (60), Expect = 8.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ KKK K + KK +KK K
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Score = 26.9 bits (60), Expect = 9.6
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T + KKK K K K K+
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 30.0 bits (68), Expect = 0.55
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
++KKKKKKK KKKK KK K +
Sbjct: 180 EEKKKKKKKSAKKKKLKKVAAVGMKAI 206
Score = 29.2 bits (66), Expect = 1.0
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
KKKKKKK KKKK KK K
Sbjct: 179 EEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+KKKKKKK KKKK KK K
Sbjct: 179 EEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
S +++KKKKKKK KKKK KK
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
N +KKKKKK KKKK KK K
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 27.7 bits (62), Expect = 3.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D +++KKKKKKK KKKK KK
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAA 200
Score = 26.5 bits (59), Expect = 9.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + KKK +++KKKKKKK KKKK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKK 194
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 29.5 bits (67), Expect = 0.55
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
++ K++KKK+ K+KK+++K++K++L KK
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKK 126
Score = 29.1 bits (66), Expect = 0.86
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+ K++KKK+ K+KK+++K++K++ K+ KH
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
Score = 28.4 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 6/33 (18%)
Query: 166 RKKKKKKKKKKKKKKKKKKK------KKKKKKR 192
K++KKK+ K+KK+++K++K KKK K R
Sbjct: 98 NKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.4 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R K+KK+++K++K++ K++KKK K +
Sbjct: 104 KRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 27.2 bits (61), Expect = 4.0
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K + ++ K++KKK+ K+KK+++K+R K+
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQ 122
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 30.4 bits (69), Expect = 0.55
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
L++ +K + K+KKK+KKK++KKKK+ +RL
Sbjct: 313 LKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERL 348
Score = 28.5 bits (64), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 152 TMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
M+ D + K K ++ +K + K+KKK+KKK
Sbjct: 298 KMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKK 337
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 30.3 bits (69), Expect = 0.55
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK-RLYIFKK 198
L + G ++ + ++ K+KKKKKKKKKKK++ R ++ +K
Sbjct: 66 EKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 0.59
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G T KK K KKK KK KKK+ K+ K
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDE 172
Score = 27.5 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K K KKK KK KKK+ K+ K +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEE 173
>gnl|CDD|221054 pfam11274, DUF3074, Protein of unknown function (DUF3074). This
eukaryotic family of proteins has no known function but
appears to be part of the START superfamily.
Length = 183
Score = 30.0 bits (68), Expect = 0.59
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 48 SAIHGHGRSTADRQFYFVNSRPCEPSKVSGQAEGFIIVKYDS 89
+A + R+F V S P + S + +GF+ Y S
Sbjct: 88 TASLPEEAESNPREFMVV-SLPIDHSPDAPPRKGFVRGAYAS 128
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 30.1 bits (68), Expect = 0.59
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKR 192
+K K K KK KK R
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKMR 213
Score = 29.7 bits (67), Expect = 0.96
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
T+ +K K K KK KK +K
Sbjct: 184 AAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K +K K K KK K++
Sbjct: 175 EGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKM 212
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.1 bits (68), Expect = 0.61
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+K K +KK KK K K K K K K +
Sbjct: 84 PKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 29.4 bits (66), Expect = 0.99
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K K +KK KK K K K K K K K
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 28.6 bits (64), Expect = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KK K K K K K K K K + K
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 28.6 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK K K K K K K K K + K KK
Sbjct: 94 PKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +KK KK K K K K K K K K +
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 27.8 bits (62), Expect = 3.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T K K+K K +KK KK K K K K K
Sbjct: 80 TPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 27.4 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK KK K K K K K K K K + +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 27.4 bits (61), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK KK K K K K K K K K +
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 27.1 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K K K K K K K K + K KK
Sbjct: 96 KPKPKPKPKPKPKPKVKPQPKPKKPP 121
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 29.5 bits (67), Expect = 0.63
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
+ G SR K ++++K K+KKKKKKK+ +
Sbjct: 61 KRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 28.7 bits (65), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
R + + K ++++K K+KKKKKKK+ +
Sbjct: 60 RKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 28.7 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ K ++++K K+KKKKKKK+ + Y F
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELENFYRF 95
Score = 27.2 bits (61), Expect = 3.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
G RK + K ++++K K+KKKKKKK L
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKEL 89
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 30.4 bits (69), Expect = 0.64
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ K K K K K +K K KKK+KKK+
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
Score = 27.7 bits (62), Expect = 4.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K K K K +K K KKK+KKKKK
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 27.7 bits (62), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
S+ K K K +K K KKK+KKKKK
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSA 1186
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+++ K K K K K +K K KKK++
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEK 1179
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK K KKK+KKKKK K KK
Sbjct: 1169 LRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 27.3 bits (61), Expect = 7.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++ K K +K K KKK+KKKKK K
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVV 1195
Score = 27.3 bits (61), Expect = 7.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G + K +K K KKK+KKKKK K KK
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Score = 27.3 bits (61), Expect = 7.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K +K K KKK+KKKKK K KK
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 26.9 bits (60), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
T K K +K K KKK+KKKKK K + ++
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.1 bits (66), Expect = 0.65
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 165 SRKKKKKK------KKKKKKKKKKKKKKKKKKKRLYIF 196
+R +K K + K K+K+KKKKKKK+ + Y F
Sbjct: 57 TRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRF 94
Score = 28.8 bits (65), Expect = 0.89
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RK K +++ + K K+K+KKKKKKK L
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKEL 88
Score = 28.4 bits (64), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKK---------KKKKRL 193
R G + + K K+K+KKKKKKK+ + KKK+ L
Sbjct: 61 RKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEEL 104
Score = 26.4 bits (59), Expect = 5.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T +K K +++ + K K+K+KKKKK+
Sbjct: 57 TRGGRKGKTAREEAVEAKAKEKEKKKKKK 85
Score = 26.1 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKK------KKKKKKKK 190
+ K K+K+KKKKKKK+ + ++KKK++
Sbjct: 63 GKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 29.6 bits (67), Expect = 0.78
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R + +KKK + KKK K KK + L
Sbjct: 148 RTEILAEKKKPRSKKKSSKNSKKLRIDL 175
Score = 28.5 bits (64), Expect = 1.9
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 149 FRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKK 184
R+ + +K + KKK K KK +
Sbjct: 139 KRMANYWCERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 28.5 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+ T +KKK + KKK K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 28.5 bits (64), Expect = 1.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKK 187
+KKK + KKK K KK +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRL 193
+KKK + KKK K KK + +
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRIDLV 176
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 29.6 bits (67), Expect = 0.79
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 151 ITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKK 183
+ FA+L + G + K K+++K +K+ +K
Sbjct: 134 VLGPFASLPSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 29.6 bits (67), Expect = 0.80
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
N + K + ++++ KKKKKKKKKK KK
Sbjct: 163 NPTEEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 29.6 bits (67), Expect = 1.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KKKKKKKKKK KK +
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEA 204
Score = 29.2 bits (66), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K + ++++ KKKKKKKKKK KK
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNA 197
Score = 28.9 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + ++++ KKKKKKKKKK KK
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNAT 198
Score = 28.1 bits (63), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
++++ KKKKKKKKKK KK
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSS 201
Score = 28.1 bits (63), Expect = 2.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R KKKKKKKKKK KK +
Sbjct: 180 RAKKKKKKKKKKTKKNNATGSSAEAT 205
Score = 27.7 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R ++++ KKKKKKKKKK KK
Sbjct: 175 RLEEERAKKKKKKKKKKTKKNNATGSSA 202
Score = 27.7 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ KKKKKKKKKK KK
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAE 203
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++KKKKKKKKK KK +
Sbjct: 181 AKKKKKKKKKKTKKNNATGSSAEATVS 207
Score = 26.9 bits (60), Expect = 7.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KKKKKKKK KK +
Sbjct: 183 KKKKKKKKKTKKNNATGSSAEATVSSA 209
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 29.3 bits (66), Expect = 0.80
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S+K K KKK K +K +KK K++ + ++ +K
Sbjct: 27 SKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
SR KK K KKK K +K +KK K++ +
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRA 52
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K KKK K +K +KK K++ + +K++ L
Sbjct: 29 KLLKAKKKLKSEKLEKKAKRQLRAEKRQAL 58
Score = 26.2 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ KK K KKK K +K +KK K++
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLR 51
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.1 bits (68), Expect = 0.87
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
A L + + + K+ KKKKKKKKKKKKK + Y
Sbjct: 39 FLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAY 79
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + + K++K++ K+K KKK KK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKK 31
Score = 26.6 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
N +G + K++K++ K+K KKK KK KK
Sbjct: 3 NENGENEVKQQKQQNKQKGTKKKNKKSKKD 32
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 28.6 bits (64), Expect = 0.90
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ +KKKK+ K + K KK +KK KKK
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDE 52
Score = 27.4 bits (61), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K+KKKKK+ K + K KK +KK +
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFP 54
Score = 25.5 bits (56), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
T+R K KK +KK KKK + + ++ KR
Sbjct: 34 TARPKATKKGQKKDKKKDEFPEFPEESKRRRT 65
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.0 bits (68), Expect = 0.95
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 175 KKKKKKKKKKKKKKKKKRLYIFKK 198
++KKK KK +K+ + RLY+ KK
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKK 107
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
R+KKK KK +K+ + + KK+K L
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQ 112
Score = 26.9 bits (60), Expect = 9.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++KKK KK +K+ + + KKR +
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQAL 114
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 29.2 bits (65), Expect = 0.96
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
A R G ++ +K KKKK+K +KK K KKK++K
Sbjct: 11 AKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 29.4 bits (66), Expect = 0.99
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S+K KKKK +KKK KK KKKKK++ + +
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 28.2 bits (63), Expect = 2.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + KKKK +KKK KK KKKKK+K
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEK 74
Score = 28.2 bits (63), Expect = 2.5
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
TS+KKK +KKK KK KKKKK+K++
Sbjct: 50 TSKKKKTTPRKKKTTKKTKKKKKEKEE 76
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 133 CILKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKK-----KKK 187
C++K LP K ++ + RN + K + +++ ++ +K+ + K
Sbjct: 260 CLIKRLLPERLKEKLVLIDEVIKRSKRNREEPRLKYENFREELRELLEKEPEIVYLFIKA 319
Query: 188 KKKKRLYI 195
KK Y
Sbjct: 320 KKNPGPYY 327
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 29.4 bits (67), Expect = 1.2
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G R+ +++K+K + K++++K+
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.5 bits (62), Expect = 5.7
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKK 185
A LR ++K + K++++K+
Sbjct: 474 AGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.1 bits (61), Expect = 6.7
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
G +++K+K + K++++K+
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R++ +++K+K + K++++KR
Sbjct: 477 RRRTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K + K K K K K K KK +++ KR
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 28.9 bits (65), Expect = 1.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K K K KK +++ K++ K + R
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K K K K K KK +++ K++ K
Sbjct: 98 KPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K K K K K KK +++ K++ +
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPKREVK 122
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 27.6 bits (62), Expect = 1.3
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
KKKK KK KK +KKKK KK++ I
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKKIII 56
Score = 27.6 bits (62), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
KKKK KK KK +KKKK KKK +
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKKIII 56
Score = 26.1 bits (58), Expect = 4.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
N + ++KKK KK KK +KKKK KKK
Sbjct: 24 NNNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 28.8 bits (65), Expect = 1.3
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 166 RKKKKKK--KKKKKKKKKKKKKKKKKKKR 192
R+KK+++ KK+K KK KKKKK KKK R
Sbjct: 176 RQKKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 28.4 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+K++++K +KK+K+K+ KKK+ +K
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQK 37
Score = 28.4 bits (64), Expect = 2.1
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R++K++++K +KK+K+K+ KKK+ ++
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKEDAQK 37
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKK 188
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKK 189
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKK 190
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKK 187
+K+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 27.3 bits (61), Expect = 4.3
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++K++++K +KK+K+K+ KKK+
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/26 (34%), Positives = 23/26 (88%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++++K++++K +KK+K+K+ KKK+
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKED 34
Score = 26.9 bits (60), Expect = 6.5
Identities = 9/27 (33%), Positives = 23/27 (85%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++K++++K +KK+K+K+ KKK+ +
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQ 36
Score = 26.5 bits (59), Expect = 7.8
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK+K+KKK KK+ K++K+K +KKK +R
Sbjct: 150 RKEKQKKKSKKEWKERKEKVEKKKAER 176
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKK 189
SRK+K KK KK KK+K+K+
Sbjct: 224 SRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
S +K+K KK KK KK+K+K+ F
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSPPPPF 253
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S +K+K KK KK KK+K+KR
Sbjct: 220 SSSPSRKRKAPKKVAKKVAAAKKRKQKR 247
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+S +K+K KK KK KK+K+K+
Sbjct: 220 SSSPSRKRKAPKKVAKKVAAAKKRKQKR 247
Score = 27.3 bits (61), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ +K+K KK KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.0 bits (65), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ ++ KKK+ +K KK KKK K++L
Sbjct: 47 SPKQPKKKRPTTPRKPATTKKSKKKDKEKL 76
Score = 26.6 bits (59), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKK 189
T+ +K KK KKK K+K +++KK
Sbjct: 57 TTPRKPATTKKSKKKDKEKLTEEEKK 82
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 28.6 bits (64), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K K K K +K+ K + +KR IFK
Sbjct: 2 PKNKGKGGKNRKRGKNEADDEKRELIFK 29
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 28.6 bits (64), Expect = 1.4
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ + +++K+ K+ ++K+ K KK+KK+KK + +K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 26.6 bits (59), Expect = 6.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K+ ++K+ K KK+KK+KK+KK ++L
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
Score = 26.3 bits (58), Expect = 8.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
T K+ K KK+KK+KK+KK +K KK+ K+T
Sbjct: 106 TEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.3 bits (65), Expect = 1.4
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K + + + + ++K + +KK+
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 29.3 bits (65), Expect = 1.5
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
K + + + + ++K + +KKK
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 29.3 bits (65), Expect = 1.5
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ + + ++K + +KKK++ KK+ KK
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 29.0 bits (64), Expect = 2.0
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK + K + + + + ++K
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 29.0 bits (64), Expect = 2.1
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ ++ + + + + ++K + +KKK+
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Score = 28.6 bits (63), Expect = 2.6
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K + K + + + + ++K +
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 28.2 bits (62), Expect = 4.1
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ D +K ++ KK + K + + + +
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Score = 28.2 bits (62), Expect = 4.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
KKK ++ KK + K + + ++
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 27.8 bits (61), Expect = 5.0
Identities = 4/36 (11%), Positives = 15/36 (41%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+ + KK + K + + + + +++ +K
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 27.8 bits (61), Expect = 5.8
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK ++ KK + K + + + +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEA 1361
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 28.4 bits (64), Expect = 1.4
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ +K+ K K++K+++ ++K+K+ L
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEIL 147
Score = 28.0 bits (63), Expect = 2.2
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
K+ K K++K+++ ++K+K+ K+++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQM 151
Score = 28.0 bits (63), Expect = 2.3
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ K K++K+++ ++K+K+ K++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQM 151
Score = 27.6 bits (62), Expect = 2.9
Identities = 6/28 (21%), Positives = 21/28 (75%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
++ K K++K+++ ++K+K+ K++ ++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQMKM 153
Score = 27.6 bits (62), Expect = 3.2
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
+ +K+ K K++K+++ ++K+K+
Sbjct: 122 ELLEKELAKLKREKRRENERKQKE 145
Score = 26.5 bits (59), Expect = 6.7
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K K++K+++ ++K+K+ K++ K L
Sbjct: 128 LAKLKREKRRENERKQKEILKEQMKML 154
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
+++ K K +K+K K + KK K K +LYI
Sbjct: 125 KKREVPKPKTEKEKPKTEPKKPKPSKPKLYI 155
Score = 28.6 bits (64), Expect = 1.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ D T ++ + K + K+KKK++ K K +K
Sbjct: 105 STDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K + K+KKK++ K K +K+K K
Sbjct: 116 ETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 27.0 bits (60), Expect = 4.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K + K+KKK++ K K +K+K
Sbjct: 114 PPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 26.3 bits (58), Expect = 8.6
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ + K + K+KKK++ K K ++
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEK 136
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R K +K+ K +K+KKKKKKK+
Sbjct: 58 KGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T + ++ K +K+ K +K+KKKKK+
Sbjct: 56 TKKGRRPKTARKESVAAKAAEKEKKKKKK 84
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 29.0 bits (65), Expect = 1.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+RK+K +K K KK KK + +
Sbjct: 354 AEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 28.7 bits (64), Expect = 2.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 144 KNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+G + +T+ + D +K + +K+K +K K KK KK
Sbjct: 330 KDGTQTELTLKEDGAFDVDAYPKKAEAARKRKGDRKGVSHKAKKGGKKN 378
Score = 26.7 bits (59), Expect = 8.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKK 187
RK +K K KK KK + +
Sbjct: 355 EAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KKKKKKKK KK K KK K++K
Sbjct: 256 KKKKKKKKKVVHKKYKTKKLTGKQRKA 282
Score = 28.9 bits (65), Expect = 1.8
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S+ KKKKKKKKK KK K KK K+R
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLTGKQR 280
Score = 28.5 bits (64), Expect = 2.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
N +KKKKKKK KK K KK K++K R
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKAR 283
Score = 28.5 bits (64), Expect = 2.6
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R K KKKKKKKKK KK K KK
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKL 275
Score = 27.0 bits (60), Expect = 7.9
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 172 KKKKKKKKKKKKKKKKKKKKRL 193
K KKKKKKKKK KK K K+L
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKL 275
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 28.9 bits (65), Expect = 1.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++K +++ + K+ K KKK KKKR FK+
Sbjct: 6 KRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 27.7 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K+ K KKK KKK+K KR
Sbjct: 12 ELAVQVAKQAKAKKKANKKKRKIYFKRA 39
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 28.1 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RKK K+K ++ K K KK++ +K+K+K
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKE 91
Score = 27.7 bits (62), Expect = 2.5
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
LR KK++ +K+K+K+++ K + +K+R + KK
Sbjct: 70 EKLRRDKL-KAKKEEAEKEKEKEERFMKALAEAEKERAELEKK 111
Score = 26.6 bits (59), Expect = 6.4
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+G + K+K ++ K K KK++ +K+K+K++R
Sbjct: 63 EGRKKAKEKLRRDKLKAKKEEAEKEKEKEERF 94
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 27.9 bits (62), Expect = 1.8
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRL 193
+++ KK KKK++KKKKKKK K L
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNL 123
Score = 27.5 bits (61), Expect = 2.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKK 189
R+ KK KKK++KKKKKKK K
Sbjct: 100 QRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 27.1 bits (60), Expect = 3.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 26.7 bits (59), Expect = 5.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKK 190
++++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.9 bits (65), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
R++ ++ K KKKK+KKK+ +K R ++
Sbjct: 416 REELIEEGLLKSKKKKRKKKEWFEKFRWFVSS 447
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 28.1 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK +K+ K ++KK + K+K K KK+
Sbjct: 104 AGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 27.3 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R G +K +K +K+ K ++KK + K+K K
Sbjct: 95 RLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVS 128
Score = 26.5 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
G +KKK +K +K+ K ++KK + K+K ++ KK
Sbjct: 97 GLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
K++K ++KK+K + + ++++ K R K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTR 65
Score = 28.1 bits (63), Expect = 2.7
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+++K ++KK+K + + ++++ K +K++L
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKL 62
Score = 27.3 bits (61), Expect = 4.4
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K++K ++KK+K + + ++++ K +K
Sbjct: 31 ALALKREKAQEKKRKAEAQAERRELKARK 59
Score = 26.1 bits (58), Expect = 9.4
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ ++KK+K + + ++++ K +K+K K + K
Sbjct: 38 KAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.4 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKK 185
KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 2.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 173 KKKKKKKKKKKKKKKKKKKRLYIF 196
KK K K+ +K + KKKK+
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDN 108
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 167 KKKKKKKKKKKKKKKKKKKKK 187
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 168 KKKKKKKKKKKKKKKKKKKKK 188
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 169 KKKKKKKKKKKKKKKKKKKKK 189
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 170 KKKKKKKKKKKKKKKKKKKKK 190
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 171 KKKKKKKKKKKKKKKKKKKKK 191
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 172 KKKKKKKKKKKKKKKKKKKKRLYI 195
KK K K+ +K + KKKKK+
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDN 108
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.7 bits (64), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 173 KKKKKKKKKKKKKKKKKKKRLY 194
++ K+KKKKK KKKK K L
Sbjct: 86 NQENKQKKKKKDKKKKSPKSLL 107
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKK 185
S K+K++ KK+KKKK KK K
Sbjct: 352 ALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R K+K++ KK+KKKK KK K
Sbjct: 345 AAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 174 KKKKKKKKKKKKKKKKKKRL 193
K+K++ KK+KKKK KK +L
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.8 bits (65), Expect = 2.2
Identities = 9/36 (25%), Positives = 24/36 (66%), Gaps = 9/36 (25%)
Query: 166 RKKKKKKKKKKKK---------KKKKKKKKKKKKKR 192
+K++KKK++++ K +K ++K++KK+ ++
Sbjct: 287 KKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 28.4 bits (64), Expect = 2.3
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 9/37 (24%)
Query: 166 RKKKKKKKKKKKKKKK---------KKKKKKKKKKRL 193
++KK++KKK++++ K +K ++K++KK+
Sbjct: 284 AQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S K+K+K++ + +K K+ ++KK+++KR
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
Score = 27.9 bits (62), Expect = 3.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + D RK+ K+K+K++ + +K K+ ++KK
Sbjct: 150 LSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKK 185
Score = 26.8 bits (59), Expect = 7.6
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +K+ K+K+K++ + +K K+ ++K+
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKK 185
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
+ +K+KKK K++KK K++K K +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPYG 125
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 28.2 bits (64), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
KK +K +K KKKKK++K K R+ +
Sbjct: 192 KKLLEKPEKPKKKKKRRKGFSKDVRIAV 219
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 26.3 bits (58), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 25.9 bits (57), Expect = 3.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
KK KKK ++KKKK KKK+K +L
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPKL 31
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R K KK+K KK+K+ K++ K
Sbjct: 351 RVKAKKEKLAKKRKQVSKEEAAAIKAA 377
Score = 27.1 bits (60), Expect = 7.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K KK+K KK+K+ K++ K
Sbjct: 350 ARVKAKKEKLAKKRKQVSKEEAAAIKA 376
>gnl|CDD|240239 PTZ00041, PTZ00041, 60S ribosomal protein L35a; Provisional.
Length = 120
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 174 KKKKKKKKKKKKKKKKKKRLY 194
+ KKKKK +KKK RLY
Sbjct: 1 MHQLTKKKKKTNRKKKPVRLY 21
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
KKK++KKK K+ +K++K++KK
Sbjct: 43 NEGVSKKKQRKKKPKRLTRKQRKRQKKG 70
Score = 26.3 bits (58), Expect = 6.4
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
KKK++KKK K+ +K++K++KK L
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQKKGL 71
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.2 bits (63), Expect = 2.6
Identities = 7/35 (20%), Positives = 29/35 (82%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++++K++++++K++KK+++++++K+K ++K
Sbjct: 192 LKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 28.2 bits (63), Expect = 2.7
Identities = 7/27 (25%), Positives = 24/27 (88%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK K++++K++++++K++KK+++++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 27.4 bits (61), Expect = 5.6
Identities = 7/26 (26%), Positives = 23/26 (88%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
KK K++++K++++++K++KK++++
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEE 213
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 28.5 bits (64), Expect = 2.6
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K + K+K K ++ K+K++K+
Sbjct: 261 GFESEYEPINKPVRPKRKTKAQRNKEKRRKELE 293
Score = 28.1 bits (63), Expect = 2.9
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RK K ++ K+K++K+ +++ K++K+ +
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKK 304
Score = 27.4 bits (61), Expect = 5.0
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
T ++ K+K++K+ +++ K++K+ KKK
Sbjct: 279 TKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 27.4 bits (61), Expect = 5.4
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K + K+K K ++ K+K++K+ ++
Sbjct: 263 ESEYEPINKPVRPKRKTKAQRNKEKRRKELEREA 296
Score = 27.4 bits (61), Expect = 5.6
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
++ ++ K+K++K+ +++ K++K+ KKK + +
Sbjct: 279 TKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311
Score = 27.4 bits (61), Expect = 6.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K+K K ++ K+K++K+ +++ K KK
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 27.8 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K++K+ K KK K K KK KK L
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAAL 133
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 28.6 bits (64), Expect = 2.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
A + + +KK+K++ + K+K++K ++KK
Sbjct: 400 AKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 27.1 bits (60), Expect = 6.8
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
++ +KK+K++ + K+K++K ++KK
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 28.1 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+++ KK K KKKK K K K +Y +KK
Sbjct: 206 LQRELMKKGKGKKKKIVKDKDGKVVYKWKK 235
Score = 27.3 bits (61), Expect = 4.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK K KKKK K K K K KK+R
Sbjct: 211 MKKGKGKKKKIVKDKDGKVVYKWKKER 237
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
R+ +GT + +K K++K+ +K + + K
Sbjct: 256 RDPNGTFQVARKAAMKRRKRNRKLRARNAK 285
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.1 bits (63), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K +K++KK K++KK K +K+K +
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 26.5 bits (59), Expect = 2.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK++KKK+ KK K +++ +++ K K+
Sbjct: 11 RKEQKKKELKKNKAERQARREAKLAKK 37
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 28.2 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFK 197
KKKKKKKKK K+ + + IF
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFM 35
Score = 27.4 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLY 194
KKKKKKKKK K+ + KK ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIF 34
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 27.4 bits (61), Expect = 3.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ KKK+KK + + KK KK+++
Sbjct: 76 QTHKKKRKKSRHVSSRSAKKISAKKRRRS 104
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+S+ KKK+KK + + KK KK+R
Sbjct: 74 SSQTHKKKRKKSRHVSSRSAKKISAKKRR 102
Score = 26.6 bits (59), Expect = 5.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T +KK+KK + + KK KK+++
Sbjct: 77 THKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 167 KKKKKKKKKKKKKKKKKKKKK 187
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 168 KKKKKKKKKKKKKKKKKKKKK 188
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 169 KKKKKKKKKKKKKKKKKKKKK 189
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 170 KKKKKKKKKKKKKKKKKKKKK 190
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 171 KKKKKKKKKKKKKKKKKKKKK 191
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 8.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 173 KKKKKKKKKKKKKKKKKKKR 192
+K++ KKKKK+KK KK +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVE 752
Score = 26.7 bits (60), Expect = 8.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 172 KKKKKKKKKKKKKKKKKKKKR 192
+K++ KKKKK+KK KK + ++
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|216256 pfam01032, FecCD, FecCD transport family. This is a sub-family
of bacterial binding protein-dependent transport
systems family. This Pfam entry contains the inner
components of this multicomponent transport system.
Length = 311
Score = 28.2 bits (64), Expect = 3.1
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 2 GHVSLTISQLINIIPITQSSPDASLLEEFRIPPDITAMFT-----LSGFI 46
G VS++ S + + + S A ++ + R+P + A+ +SG +
Sbjct: 13 GSVSISPSDVFSALFGPDDSLAAFIVWDLRLPRVLAALLVGAALAVSGAL 62
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.5 bits (63), Expect = 3.1
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKK--------KKKKKKKKKKKKR 192
+ N D K+ KK ++ ++K +++K +KK +K+R
Sbjct: 99 VVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRR 141
>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein.
Expression of this protein was found to be markedly
reduced in patients with Alzheimer's disease. It is
involved in the regulation of actin polymerisation in
the brain as part of a WAVE2 signalling complex.
Length = 1118
Score = 28.2 bits (63), Expect = 3.3
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 3 HVSLTISQLINIIPITQSSPDASLLEEFRIPPDITAMFT---LSGFISSAIHGHGRSTAD 59
+VS+ I+++I + + Q+ P S E ITA++T L + G +
Sbjct: 752 YVSMDITRVIRNVLLQQTQPLDSHGE-----GTITALYTNWYLDNLLRQVSGGG-IVFSP 805
Query: 60 RQFYFVNSRPCEPS 73
FV+S P E
Sbjct: 806 AMKAFVSSPPEELG 819
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/31 (25%), Positives = 25/31 (80%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
D + R ++K+++K+++K++K++K++K++
Sbjct: 6 DKSGRIIDIEEKREEKEREKEEKERKEEKEK 36
Score = 26.9 bits (60), Expect = 5.3
Identities = 9/33 (27%), Positives = 26/33 (78%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+ G ++K+++K+++K++K++K++K+K+
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 27.3 bits (61), Expect = 3.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+RK+ K ++++ +K +K+ KK KK
Sbjct: 98 ARKEALKAYQQEELRKIQKRSKKSKKAE 125
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 27.2 bits (61), Expect = 3.5
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIF 196
K +++KK+K+KKKKKKK+ + Y F
Sbjct: 72 KAAEEEKKEKEKKKKKKKELEDFYRF 97
Score = 26.5 bits (59), Expect = 5.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKK------KKKKKKKRL 193
G + +++KK+K+KKKKKKK+ + ++KKK+
Sbjct: 65 AAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQ 107
Score = 26.5 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
R G + K +++KK+K+KKKKKKK+ +
Sbjct: 61 RKGPAAGEEAGKAAEEEKKEKEKKKKKKKELE 92
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 25.2 bits (56), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+R++ KK KKKKK K + K K
Sbjct: 10 ARERNAKKAAKKKKKGAKSQLKAAAKA 36
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 153 MMFANLRNGDGTSR-----KKKKKKKKKKKKKKKKKKKKKKKKKR 192
A G G +KKK++KK+++K+ K+ R
Sbjct: 155 EKEAAGSGGGGGGTWGLVGVPGHSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.2 bits (60), Expect = 3.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKK 184
S ++ +KK +KK+KK
Sbjct: 55 KKISAEEAEKKLLQKKEKKALTN 77
Score = 26.8 bits (59), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
KK KK ++ +KK +KK+KK +
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALTNV 78
Score = 26.4 bits (58), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
G ++K KK ++ +KK +KK+KK L
Sbjct: 49 GLNKKPKKISAEEAEKKLLQKKEKKALTNVL 79
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.0 bits (62), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 163 GTSRKKKKKKKKKKKKKKK------KKKKKKKKKKRLYIFKKHT 200
G R+ K KK KK KK ++ KK+KKK + KK+
Sbjct: 604 GGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYG 647
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 25.3 bits (56), Expect = 3.8
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
+RKKK +K KKK KK K K + YI K
Sbjct: 2 NRKKKINQKLKKKAKKANAKLHPSNKPK-YISK 33
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 27.3 bits (61), Expect = 3.8
Identities = 8/28 (28%), Positives = 25/28 (89%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RK++++KK +++ K+K+++++ +++KR+
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRI 57
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 26.0 bits (58), Expect = 3.9
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
R+++ +K +K+K+KK +K+++K+L
Sbjct: 33 RRREFYEKPSEKRKRKKAAARKRRRKKLA 61
Score = 25.2 bits (56), Expect = 7.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLY 194
K +K+K+KK +K+++KK R
Sbjct: 40 KPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
KK KK KK K KK KK K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 27.2 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
KK KK KK K KK KK K
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 27.2 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++K KK KK KK K KK KK +
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 27.2 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S+KK K KK K K KK K+
Sbjct: 223 AKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K K KK KKK K KK
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 26.8 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKK 189
++K KK KK K KK KK K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 26.8 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
++ KK K K KK KK KK L K
Sbjct: 232 AKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAV 267
Score = 26.8 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ K KK KK KK KK K KK
Sbjct: 242 AKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 26.8 bits (59), Expect = 9.2
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK K KK KK K K K
Sbjct: 261 KKAAKAVKKAAKKAAKAAAKAAKGAA 286
Score = 26.8 bits (59), Expect = 9.6
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
KK K K KK KK KK
Sbjct: 231 AAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 26.8 bits (59), Expect = 9.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K KK KK KK KK K KK
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKK 269
Score = 26.8 bits (59), Expect = 9.9
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ KK K K KK KKK K
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAV 236
Score = 26.8 bits (59), Expect = 9.9
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G + K K KK KKK K K+
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G + KK K KK KK KK K
Sbjct: 259 GGPGKKPAKKATAAKAKKTTAKKAAAKKAAKT 290
Score = 27.4 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R G KK KK K KK KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKA 287
Score = 27.0 bits (60), Expect = 7.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++K K KK KK KK K KK
Sbjct: 265 PAKKATAAKAKKTTAKKAAAKKAAKTKK 292
Score = 26.6 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
T+ K KK KK KK K KK KK
Sbjct: 270 TAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 27.2 bits (61), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 165 SRKKKKKKKKKKKKKKKKK---------KKKKKKKKR 192
+KK K+ K K KKK +++K+KKK
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKH 37
Score = 27.2 bits (61), Expect = 4.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 15/50 (30%)
Query: 159 RNGDGTSRKKKKKKKKKK------KKK---------KKKKKKKKKKKKRL 193
R+ +G ++ K K + +KK KK K KKKK K KK +L
Sbjct: 45 RHNEGNTQSKGKGQAQKKDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPKL 94
Score = 26.4 bits (59), Expect = 9.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 165 SRKKKKKKKKKKKKKKKK---------KKKKKKKKKR 192
+K K+ K K KKK +++K+KKK +
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional.
Length = 116
Score = 27.0 bits (59), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
KK KK K KKK K K + ++YI+K
Sbjct: 7 KKPAKKAAKGAKKKGSKSKTETYKIYIYK 35
>gnl|CDD|241543 cd13392, PH_AKAP13, A-kinase anchoring protein 13 Pleckstrin
homology (PH) domain. The Rho-specific GEF activity of
AKAP13 (also called Brx-1, AKAP-Lbc, and proto-Lbc)
mediates signaling downstream of G-protein coupled
receptors and Toll-like receptor 2. It plays a role in
cell growth, cell development and actin fiber formation.
Protein kinase A (PKA) binds and phosphorylates AKAP13,
regulating its Rho-GEF activity. Alternative splicing of
this gene in humans has at least 3 transcript variants
encoding different isoforms (i.e. proto-/onco-Lymphoid
blast crisis, Lbc and breast cancer nuclear
receptor-binding auxiliary protein, Brx) containing a
dbl oncogene homology (DH) domain and PH domain which
are required for full transforming activity. The DH
domain is associated with guanine nucleotide exchange
activation while the PH domain has multiple functions
including determine protein sub-cellular localisation
via phosphoinositide interactions, while others bind
protein partners. Other ligands include protein kinase C
which is bound by the PH domain of AKAP13, serving to
activate protein kinase D and mobilize a cardiac
hypertrophy signaling pathway. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 157
Score = 27.2 bits (60), Expect = 4.1
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 89 SDLFIIDQHATDEKYNFETL-QKTTVIKSQKLVVPQNLHLTK 129
SD+ + Q D+KY F +L QK+TVI +KL+V + H K
Sbjct: 79 SDILVFLQE-KDQKYVFASLDQKSTVISLKKLIVREVAHEEK 119
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 4.1
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 160 NGDGTSRKKKKKKKKKKKKKK---KKKKKKKKKKKR 192
G G ++K K KKK+KKKK+ + K+KKK+K
Sbjct: 5 QGQGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRKG 40
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 27.3 bits (61), Expect = 4.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K+ K + KKK + K++
Sbjct: 106 LKRVAANDAIKAEAKKKGELPSTKRQP 132
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 28.0 bits (62), Expect = 4.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKK 184
G SRKK K KK KKK K
Sbjct: 660 GGSRKKSSKSSKKGSDKKKSGK 681
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 27.9 bits (62), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+R + KK ++ KK KK KK
Sbjct: 1185 AAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 27.9 bits (62), Expect = 4.9
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+K ++ + + KK ++ KK
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKK 1204
Score = 27.9 bits (62), Expect = 5.1
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
L+ KK ++ KK KK KK
Sbjct: 1180 EKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 27.1 bits (60), Expect = 7.2
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KK ++ KK KK KK
Sbjct: 1182 LQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 27.5 bits (61), Expect = 4.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKK 181
GD +S KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 26.7 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKK 185
K KK KK KKKKKKK+
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 27.2 bits (61), Expect = 4.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+ KK+++KK++ K +K++ K KK
Sbjct: 135 DPKEDPFAKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 27.1 bits (60), Expect = 4.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
R++ K++ K+KK +KK K+ ++ + Y KK
Sbjct: 103 REESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEG 137
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K K++ KK+ +++ K K + KKK KK
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Score = 27.5 bits (61), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++KK + KKK + + K K + K K K
Sbjct: 164 AKKKAAEAKKKAEAEAKAKAEAKAKAKA 191
Score = 26.7 bits (59), Expect = 8.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+ +++ K K + KKK + KKK
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKA 175
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 27.2 bits (61), Expect = 4.6
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+ + K +KKK ++ +K+ + RL+ F++
Sbjct: 24 NRATLRDDKLEKKKAERAEKRSLELDRLFFFQEQ 57
Score = 26.4 bits (59), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
SRK K+ + + K +KKK ++ +KR
Sbjct: 17 SRKAKQLNRATLRDDKLEKKKAERAEKR 44
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 27.6 bits (62), Expect = 4.6
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
R G K + K +K+K K+ + I
Sbjct: 291 RPGTDRIVFDGTKWEDKSAFQKRKDLKEDPEDADRLI 327
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 26.8 bits (60), Expect = 4.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K +KK+++KK + +K K ++K Y +K
Sbjct: 21 KAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEK 53
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 27.1 bits (61), Expect = 4.6
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRL 193
K+KKKKKKKKK+ + ++KKKK +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
Score = 26.7 bits (60), Expect = 5.6
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
K+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYV 105
Score = 26.7 bits (60), Expect = 5.6
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYV 105
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 26.9 bits (60), Expect = 4.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
SRKK K +K K K K+KK K KR
Sbjct: 15 SRKKGVKALRKAAVAKSKDKQKKPKSKR 42
Score = 26.9 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +KK K +K K K K+KK K
Sbjct: 13 KRSRKKGVKALRKAAVAKSKDKQKKPKS 40
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.4 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKK----KKKKRLYIFKKH 199
+S + ++ KKK++ + KKKK+ ++ +KK YI +K
Sbjct: 79 ELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 27.5 bits (61), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K + K +K K+ KK+KK+++K L
Sbjct: 21 PRPVKDEAKPRKIKRVKKRKKREEKDEL 48
Score = 27.1 bits (60), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKK 188
G K + K +K K+ KK+KK+++K
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEK 45
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 27.6 bits (61), Expect = 5.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+G+ + ++ KKKK KK K +K+ K+K KK K L
Sbjct: 60 QANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIKSL 96
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.5 bits (62), Expect = 5.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 158 LRNGDGTSRKKKK---KKKKKKKKKKKKKKKKKKKKKRLYIFK 197
L+ G S K + +K+ K +KK+KKKKK+K++ K
Sbjct: 596 LQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 27.7 bits (62), Expect = 5.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 144 KNGFEF-----RITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K GFEF + + K +K KK KK KK +K
Sbjct: 808 KIGFEFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.1 bits (60), Expect = 5.5
Identities = 10/23 (43%), Positives = 21/23 (91%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKR 192
++K+K++KKK K+ K+++K++KR
Sbjct: 185 QQKEKEEKKKVKEAKRREKEEKR 207
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 27.4 bits (60), Expect = 5.6
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 4 VSLTISQLINIIPITQSSPDASLLEEFRIPPDITAM-FTLSGFISSAIHGHGRSTAD 59
++ T S + + P+T SS +S L FR P+I+++ F+ + S A+ RS AD
Sbjct: 34 MAATSSSALLLNPLTSSS-SSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFAD 89
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 26.7 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 163 GTSRKKKKKKKKKKKK-------KKKKKKKKKKKKKRLYIFK 197
G SR + +++ +K+KK +K KK + KK +I +
Sbjct: 57 GISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINR 98
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.5 bits (62), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
L+ ++K+KKK+KKK KKKK K + K
Sbjct: 384 ELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 26.8 bits (60), Expect = 8.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
++K+KKK+KKK KKKK K + ++Y
Sbjct: 393 VGVAPEQKEKKKEKKKNKKKKYKVPRGKIY 422
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 27.2 bits (60), Expect = 6.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKK 186
K KKK K KK KKK+ K+
Sbjct: 206 HEKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 6.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKR 192
K K KKK K KK KKK+ KR
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKK 188
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKK 189
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKK 190
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKK 191
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 26.4 bits (59), Expect = 6.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+KK++K K + + ++ +K+K R Y F
Sbjct: 75 ELQKKREKTKPTRASQVRRGDRKEKIRTYNF 105
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an exchange
factor for Cdc42 and an effector of Ras1, the homolog of
the human H-Ras. Scd2/Bem1 mediates Cdc42 activation by
binding to Scd1/Cdc24 and to Cdc42. Ras1 regulates
Scd1/Cdc24/Ral1, which is a putative guanine nucleotide
exchange factor for Cdc42, a member of the Rho family of
Ras-like proteins. Cdc42 then activates the Shk1/Orb2
protein kinase. Scd1 interacts with Klp5 and Klp6
kinesins to mediate cytokinesis. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 26.5 bits (59), Expect = 6.2
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
KKKKKK K K KKKKKK L +
Sbjct: 63 VKKKKKKSSLKSKSSSSSKKKKKKGPLQL 91
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 27.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+KKK+K++ KK K KK++K K
Sbjct: 563 RRKKKRKRRAAKKAVTKAKKERKIGK 588
Score = 27.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K ++++KKK+K++ KK K KK+R
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKER 584
>gnl|CDD|203441 pfam06421, LepA_C, GTP-binding protein LepA C-terminus. This
family consists of the C-terminal region of several pro-
and eukaryotic GTP-binding LepA proteins.
Length = 108
Score = 26.0 bits (58), Expect = 6.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKK 183
A GD SRKKK +K+K+ KK+ K+
Sbjct: 65 AKCYGGD-ISRKKKLLEKQKEGKKRMKQ 91
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 27.3 bits (60), Expect = 6.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 153 MMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
M+ L + + +KK KK++ K+K+K ++ K++R
Sbjct: 380 MLDEFLGSYLPKVQGRKKAKKREDKRKRKSALEELDKERR 419
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 27.0 bits (60), Expect = 6.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKK 189
T R+ K K KK+KKK+ K+KKK
Sbjct: 187 TLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 26.9 bits (60), Expect = 7.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
+ D KKK +K + K K+K K
Sbjct: 187 DFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAK 219
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 26.6 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKK 190
RK++ KKK K +K K+ +KK
Sbjct: 157 EKRKERAAAYYKKKVKLRKAWKEARKK 183
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 26.9 bits (60), Expect = 7.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 144 KNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K ++ I + ++ D +S KKKK+KK+ K KK +++ KK + +K
Sbjct: 26 KELYDKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEK 80
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 27.1 bits (60), Expect = 8.0
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K + K +K K ++
Sbjct: 224 KAAAAKAAAEAKAAAEKAAAAKAAEK 249
Score = 26.7 bits (59), Expect = 8.3
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K K + K +K K
Sbjct: 223 AKAAAAKAAAEAKAAAEKAAAAKAA 247
>gnl|CDD|239568 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transducer domain,
having a ribosomal S5 domain 2-like fold, found in
proteins similar to yeast and human MLH3 (MutL
homologue 3). MLH3 belongs to the DNA mismatch repair
(MutL/MLH1/PMS2) family. This transducer domain is
homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes. MLH1 forms heterodimers with
MLH3. The MLH1-MLH3 complex plays a role in meiosis. A
role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has
not been established. It has been suggested that hMLH3
may be a low risk gene for colorectal cancer; however
there is little evidence to support it having a role in
classical HNPCC.
Length = 141
Score = 26.1 bits (58), Expect = 8.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVSG 77
+ +SG+ISS H + QF +VN R ++
Sbjct: 28 YEVSGYISSEGHY----SKSFQFIYVNGRLYLKTRFHK 61
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 26.1 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RKK KK K+++ KKK++K K K KK+
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 26.9 bits (59), Expect = 9.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 149 FRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
F + ++ R+ RK KK + KK K +KK+ ++++
Sbjct: 525 FGVQLLVDYFRHNKPPKRKGIKKAQNAKKDLKVVQKKRHGRRRK 568
>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in
neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin
(Ig)-like domain in neuregulins (NRGs). NRGs are
signaling molecules, which participate in cell-cell
interactions in the nervous system, breast, heart, and
other organ systems, and are implicated in the pathology
of diseases including schizophrenia, multiple sclerosis,
and breast cancer. There are four members of the
neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1
protein, binds to and activates the tyrosine kinases
receptors ErbB3 and ErbB4, initiating signaling
cascades. The other NRGs proteins bind one or the other
or both of these ErbBs. NRG-1 has multiple functions;
for example, in the brain it regulates various processes
such as radial glia formation and neuronal migration,
dendritic development, and expression of
neurotransmitters receptors; in the peripheral nervous
system NRG-1 regulates processes such as target cell
differentiation, and Schwann cell survival. There are
many NRG-1 isoforms, which arise from the alternative
splicing of mRNA. Less is known of the functions of the
other NRGs. NRG-2 and -3 are expressed predominantly in
the nervous system. NRG-2 is expressed by motor neurons
and terminal Schwann cells, and is concentrated near
synaptic sites and may be a signal that regulates
synaptic differentiation. NRG-4 has been shown to direct
pancreatic islet cell development towards the delta-cell
lineage.
Length = 75
Score = 25.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K K+ +K K + K + KKK L I K
Sbjct: 20 KDGKELNRKNKPRNIKIRNKKKNSELQINK 49
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 26.5 bits (58), Expect = 9.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
SRKK + K++KK K K + +++ + +R K
Sbjct: 217 SRKKSRSKRRKKAKLKLARLRERIRNRRKDFHKLAK 252
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 26.4 bits (58), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 161 GDGTSRKKKKKKKKKKKKKK 180
D +S K KKKKKK+ K
Sbjct: 26 NDSSSSKSKKKKKKRSKATS 45
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 26.7 bits (59), Expect = 9.3
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 151 ITMMFANL----RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ F L N KK K K ++K
Sbjct: 253 VDKKFDELQQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLD 297
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 26.7 bits (60), Expect = 9.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 176 KKKKKKKKKKKKKKKKRLYIF 196
+K KK KK KK K K L IF
Sbjct: 343 RKSKKYKKNKKNKWTKALSIF 363
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 26.7 bits (59), Expect = 9.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ ++ K++ +KK+K KKK +K+K
Sbjct: 343 EDEDDEESKEEVEKKQKVKKKPRKRK 368
Score = 26.7 bits (59), Expect = 9.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
D + ++ K++ +KK+K KKK +K+K
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKRKV 369
>gnl|CDD|188624 cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease. The Xeroderma pigmentosum complementation
group G (XPG) nuclease plays a central role in
nucleotide excision repair (NER) in cleaving DNA bubble
structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. Members of this subgroup include the
H3TH (helix-3-turn-helix) domains of XPG and other
similar eukaryotic 5' nucleases. These nucleases contain
a PIN (PilT N terminus) domain with a helical arch/clamp
region/I domain (not included here) and inserted within
the PIN domain is an atypical helix-hairpin-helix-2
(HhH2)-like region. This atypical HhH2 region, the H3TH
domain, has an extended loop with at least three turns
between the first two helices, and only three of the
four helices appear to be conserved. Both the H3TH
domain and the helical arch/clamp region are involved in
DNA binding. Studies suggest that a glycine-rich loop
in the H3TH domain contacts the phosphate backbone of
the template strand in the downstream DNA duplex. These
nucleases have a carboxylate rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+ or Mn2+) required for nuclease activity.
The first metal binding site is composed entirely of
Asp/Glu residues from the PIN domain, whereas, the
second metal binding site is composed generally of two
Asp residues from the PIN domain and one Asp residue
from the H3TH domain. Together with the helical arch and
network of amino acids interacting with metal binding
ions, the H3TH region defines a positively charged
active-site DNA-binding groove in structure-specific 5'
nucleases.
Length = 97
Score = 25.7 bits (57), Expect = 9.5
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ +K + K++ K+K K K L +
Sbjct: 47 ENAQPEKSEDSDNDKQEFKRKHKNYLKNLILP 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,073,158
Number of extensions: 957624
Number of successful extensions: 15423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10375
Number of HSP's successfully gapped: 1651
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)