RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13676
(200 letters)
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA
repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis}
PDB: 3gab_A* 3kdk_A*
Length = 197
Score = 64.1 bits (157), Expect = 4e-13
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 82 FIIVKYDSDLFIIDQHATDEKYNFETLQK---TTVIKSQKLVVPQNLHLTKINQCILKDN 138
+I+ + ++ L+IIDQHA E+ +E ++ + Q+++VP H + I++ +
Sbjct: 19 YILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQH 78
Query: 139 LPVFYKNGFEF 149
G
Sbjct: 79 KQELESVGVFL 89
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase;
HET: DNA; 2.40A {Neisseria gonorrhoeae}
Length = 220
Score = 64.2 bits (157), Expect = 5e-13
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 77 GQAEG-FIIVKYDSDLFIIDQHATDEKYNFETL----QKTTVIKSQKLVVPQNLHLTKIN 131
Q G +I+ + + L +ID HA E+ N+E + Q+ ++SQ L++P +
Sbjct: 34 AQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEE 93
Query: 132 QCILKDNLPVFYKNGFEF 149
L D+ G E
Sbjct: 94 CAALADHAETLAGFGLEL 111
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 63.0 bits (154), Expect = 4e-12
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 13 NIIPITQSSPDASLLEEFRIPPD--ITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPC 70
++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N RPC
Sbjct: 238 SLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPC 297
Query: 71 EPSKVS 76
+P+KV
Sbjct: 298 DPAKVC 303
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer,
replication, signaling protein; HET: DNA MSE; 2.10A
{Escherichia coli} SCOP: d.292.1.1
Length = 188
Score = 58.9 bits (143), Expect = 2e-11
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTV-IKSQKLVVPQNLHLTKIN 131
+V +++ D ++ ++ + L + +Q L++P L ++
Sbjct: 10 RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 69
Query: 132 QCILKDNLPVFYKNGFEFRI 151
+ L+ + G +F+
Sbjct: 70 KSALEKAQSALAELGIDFQS 89
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 56.8 bits (138), Expect = 5e-10
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 7 TISQLINIIPITQSSPDASLLEEFRIPP----DITAMFTLSGFISSAIHGHGRSTADRQF 62
+ L + + +P + + D+ + G+IS G GR++ DRQF
Sbjct: 225 GMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQF 284
Query: 63 YFVNSRPCEPSKVS 76
+VN RP E S +
Sbjct: 285 IYVNKRPVEYSTLL 298
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 32.7 bits (74), Expect = 0.023
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
TS K KK K +K K KKKK+K+K Y
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 33.8 bits (77), Expect = 0.025
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K KK +K KK +KKK K KR
Sbjct: 68 KTPPPKPKKTQKPKKPTQKKKSKPGKR 94
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.7 bits (77), Expect = 0.028
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
R+ D KKKKKKKKK+ K
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 33.4 bits (76), Expect = 0.037
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
D KKKKKKKKK+ K
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.6 bits (74), Expect = 0.079
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ L + + + KKKKKKKKK+
Sbjct: 74 SALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 31.8 bits (72), Expect = 0.14
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ KKKKKKKKK+ K
Sbjct: 86 EDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.15
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ R + + KKKKKKKKKR
Sbjct: 75 ALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 28.7 bits (64), Expect = 1.4
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
L +++ + + KKKKKKK
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 28.7 bits (64), Expect = 1.5
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+ + + + KKKKKKKK+
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 33.6 bits (76), Expect = 0.030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++KK+ K+ K KK K ++KKKK+
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 33.2 bits (75), Expect = 0.041
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+KK+ K+ K KK K ++KKKK+ +
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 32.9 bits (74), Expect = 0.046
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+KK+ K+ K KK K ++KKKK+
Sbjct: 70 RQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 32.9 bits (74), Expect = 0.046
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K+ K KK K ++KKKK+ K K
Sbjct: 74 QAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 32.9 bits (74), Expect = 0.056
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K KK K ++KKKK+ K K K++R+
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPGKRQRM 106
Score = 30.9 bits (69), Expect = 0.20
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K KK K ++KKKK+ K K K+
Sbjct: 76 PKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 30.9 bits (69), Expect = 0.24
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ L G T + + + ++KK+ K+ K KK +
Sbjct: 50 SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPK 86
Score = 27.9 bits (61), Expect = 2.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+K K ++KKKK+ K K K+++ +L
Sbjct: 80 PKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 33.7 bits (77), Expect = 0.031
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 143 YKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + R+ F + RK+ + K KKK K K K+ K
Sbjct: 331 RQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.096
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
F + ++++K+ + K KKK K K K+ +
Sbjct: 342 FFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 32.9 bits (74), Expect = 0.044
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++++++ +KK+K +K K + I+ +
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 32.1 bits (72), Expect = 0.081
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+KK+K +K K + K R +
Sbjct: 23 VWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEY 57
Score = 27.1 bits (59), Expect = 3.3
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R + + +KK+K +K K + K + ++
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQY 53
Score = 26.7 bits (58), Expect = 5.1
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
KK+K +K K + K + ++ ++
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQ 60
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.5 bits (73), Expect = 0.056
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K ++K ++ ++ +K K+KR I ++
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILER 47
Score = 31.7 bits (71), Expect = 0.12
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ ++ ++ +K K+K+ +R ++K
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQK 53
Score = 28.6 bits (63), Expect = 1.4
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
++ ++ +K K+K+ ++ K++
Sbjct: 22 TAEQVAAERAARKAANKEKRAIILERNAAYQKEY 55
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.4 bits (73), Expect = 0.056
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ + +K +K K +++K + K+++ K
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISK 44
Score = 31.7 bits (71), Expect = 0.13
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ +K K +++K + K++K + + +
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWISKAQKYAA 50
Score = 28.6 bits (63), Expect = 1.3
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+K K +++K + K++K + K ++
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEY 52
Score = 27.1 bits (59), Expect = 3.7
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ + K +++K + K++K + K ++
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKY 48
Score = 26.3 bits (57), Expect = 7.5
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+++K + K++K + K +K Y
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQKYAAEY 52
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 32.4 bits (75), Expect = 0.073
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRP 69
TL G+++ H + A+ Q+ +VN R
Sbjct: 236 LTLRGWVADPNHTTP-ALAEIQYCYVNGRM 264
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 31.3 bits (70), Expect = 0.074
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR-----LYIFK 197
S KK KK K +KK KK+KK R +Y++K
Sbjct: 7 SAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYK 44
Score = 26.7 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K KK KK K +KK K+
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKK 29
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.6 bits (71), Expect = 0.14
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+KK KK+ KKK+ + K +KK R+
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDRV 280
Score = 28.1 bits (62), Expect = 1.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ KK KK+ KKK+ + K +KK +
Sbjct: 250 NPVYEKKPKKEVKKKRWNRPKMSLAQKKDR 279
Score = 26.5 bits (58), Expect = 6.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
KK+ KKK+ + K +KK + ++ F +
Sbjct: 258 KKEVKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
Score = 26.2 bits (57), Expect = 9.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++ +KK KK+ KKK+ + K KK
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKK 277
Score = 25.8 bits (56), Expect = 9.5
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+K+ KKK+ + K +KK + +K+ +
Sbjct: 256 KPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRA 290
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical
protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii}
PDB: 2zdc_A
Length = 169
Score = 30.9 bits (70), Expect = 0.15
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 24 ASLLEEFRIPPDITAMFTLSGFISSAIHGHGRSTADRQFYFVNSRPCEP 72
EEF +P D+ + +ST R + +
Sbjct: 83 FESCEEFNMPADLAVLI------------TLKSTLARNGFLAPPTVIDA 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.15
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKK-----KKKKKKKKKKKKR 192
L+ D S+ +++ ++K KK +++ ++ +K K
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Score = 30.9 bits (69), Expect = 0.16
Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 166 RKKKKK--KKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
R++++K ++ K +++ ++K KK L + +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 27.0 bits (59), Expect = 3.9
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+K +++++K+ ++ K ++
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEW 112
Score = 26.3 bits (57), Expect = 6.0
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 168 KKKKKKKKKKKKK---------KKKKKKKKKKKR 192
K +++ ++K KK ++ +K K R
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Score = 25.9 bits (56), Expect = 7.7
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
++ K +++ ++K KK ++ +
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Score = 25.9 bits (56), Expect = 8.7
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S +K +++++K+ ++ K +++ R
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWR 113
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 31.6 bits (72), Expect = 0.15
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R++ ++K ++ K K+K +K++ +K+
Sbjct: 315 RRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.35
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+++ ++K ++ K K+K +K++ ++
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 30.1 bits (68), Expect = 0.47
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++ ++K ++ K K+K +K++ +K+
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.9 bits (65), Expect = 0.90
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
++ +K+++ ++K ++ K K+K +K+RL
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERL 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.15
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 95 DQHATDEKYNFETLQKTTVIKSQKLVVPQNLHL-TKINQCILKDNLPVFYKNGFEFRITM 153
+ TD T + S L + L K C +D LP R+++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSI 332
Query: 154 MFANLRNGDGTSR----KKKKKKKKKKKKKKKKKKKKKKKKKRLY----IFKKHT 200
+ ++R DG + K K + + + ++++ +F
Sbjct: 333 IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Score = 27.1 bits (59), Expect = 5.4
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 37/117 (31%)
Query: 93 IIDQHATDEKYNFETLQKTTVIKSQKLVVPQNL----------HLTKINQCILKDNLPVF 142
I+D + + ++ + L +P L HL I +
Sbjct: 449 IVDHYNIPKTFDSDDL------------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 143 YKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+ + F F + +R+ D T+ ++ K K YI
Sbjct: 497 FLD-FRF----LEQKIRH-DSTAWNASGSILNTLQQLKFYKP---------YICDND 538
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.0 bits (69), Expect = 0.22
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+++ + K K+ +KK K +K +R I++K
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYEK 75
Score = 30.2 bits (67), Expect = 0.43
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K+ +KK K +K ++K ++ + K
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYEKAKHYHK 81
Score = 28.7 bits (63), Expect = 1.4
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
R + K+ +KK K +K ++K +K + Y +
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYR 84
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 30.0 bits (67), Expect = 0.28
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
M G RK + +K ++ K+ + R
Sbjct: 1 MGVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR 39
Score = 26.2 bits (57), Expect = 5.3
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
L R K+ + + + + +K
Sbjct: 15 LARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIG 57
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 30.6 bits (68), Expect = 0.29
Identities = 11/59 (18%), Positives = 17/59 (28%)
Query: 135 LKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
L L + L + +++ K K K KK K +K L
Sbjct: 249 LSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKAL 307
Score = 29.4 bits (65), Expect = 0.72
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K K KK K +K K
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 29.4 bits (65), Expect = 0.77
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K KK K +K K K
Sbjct: 286 FNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 29.0 bits (64), Expect = 0.87
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K K K KK K +K K
Sbjct: 283 YTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 29.0 bits (64), Expect = 0.96
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
D T K K KK K +K K
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 29.0 bits (64), Expect = 1.1
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ + K KK K +K K K K +
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 12/45 (26%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKK------------KKKKKKKKK 191
D + KK K +K K K KK K
Sbjct: 287 NTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 27.5 bits (60), Expect = 2.9
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K K KK K +K + K
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 30.7 bits (69), Expect = 0.30
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
M +N R + +R + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 30.7 bits (69), Expect = 0.34
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ + + K K+ +K + I
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNVIIIIL 41
Score = 29.5 bits (66), Expect = 0.81
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
++ + + + K K+ +K I
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 28.8 bits (64), Expect = 1.2
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ + + K K+ +K + I
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 28.4 bits (63), Expect = 1.7
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++R+ ++ + + + K K+ R
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGR 31
Score = 28.4 bits (63), Expect = 1.9
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
++ + + + K K+ +K +
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 27.6 bits (61), Expect = 3.1
Identities = 4/36 (11%), Positives = 7/36 (19%)
Query: 153 MMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
M + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.6 bits (61), Expect = 3.1
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
R ++ + + + K K+ +++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 30.0 bits (68), Expect = 0.36
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ + K KKKK KR+ +
Sbjct: 7 HHHHSSGLVPRGSHMQPVGKPPKKKKSKRILLK 39
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 30.6 bits (68), Expect = 0.37
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K K++ K +K K KK + K
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKA 383
Score = 29.8 bits (66), Expect = 0.56
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
+ K K++ K +K K KK +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNK 382
Score = 28.6 bits (63), Expect = 1.3
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+ + + K++ K +K K KK +
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFN 381
Score = 27.9 bits (61), Expect = 2.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ KK + K K++ K +K K
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKT 368
Score = 27.5 bits (60), Expect = 3.4
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K +K K KK + K K
Sbjct: 358 TLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Score = 27.5 bits (60), Expect = 3.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K++ KK + K K++ K +K K
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Score = 27.1 bits (59), Expect = 3.9
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+++ KK + K K++ K +K +
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAK 367
Score = 27.1 bits (59), Expect = 4.0
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
A ++++ K +K K KK + ++
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEE 386
Score = 26.7 bits (58), Expect = 5.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K++ KK + K K++ K R
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANR 363
Score = 26.7 bits (58), Expect = 5.4
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 149 FRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ A + K +K K KK + K
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKA 383
Score = 26.7 bits (58), Expect = 5.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K++ KK + K K++ K +K KK
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKK 371
Score = 25.9 bits (56), Expect = 9.3
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K +K K KK + K I K
Sbjct: 360 KANRKAAKTHKKGSQAWIAAFNKANEEAIAKA 391
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 29.6 bits (67), Expect = 0.38
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIP 28
Score = 28.8 bits (65), Expect = 0.58
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ K ++ + +K +K +
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.8 bits (65), Expect = 0.59
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
K ++ + +K +K K +++
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPKGVIHVQ 35
Score = 28.8 bits (65), Expect = 0.62
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRL 193
K K ++ + +K +++
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKI 27
Score = 26.1 bits (58), Expect = 5.4
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKK 189
K ++ + +K +K K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 28.3 bits (63), Expect = 0.38
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+ ++K+ K K+ KK ++ ++ RLY
Sbjct: 42 TTERKRAKASAVKRHAKKLARENARRTRLY 71
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 28.8 bits (65), Expect = 0.43
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K+ +K++ KK K +
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.5 bits (64), Expect = 0.72
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K+ +K++ KK K +
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.1 bits (63), Expect = 0.94
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ + K+ +K++ KK K
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 27.3 bits (61), Expect = 1.7
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G ++ + + K+ +K++ KK
Sbjct: 77 GILKEVVPEGYEMKRVGDYYVFEKRESKK 105
Score = 27.3 bits (61), Expect = 1.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+G + + K+ +K++ KK K
Sbjct: 75 NHGILKEVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 26.5 bits (59), Expect = 2.9
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ + + K+ +K++ K+
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKK 105
Score = 26.5 bits (59), Expect = 3.2
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + K+ +K++ KK +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 25.8 bits (57), Expect = 5.2
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 151 ITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKK 184
I +K++ KK K +
Sbjct: 78 ILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 30.3 bits (67), Expect = 0.46
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
K K+ ++ + +++K+R Y +
Sbjct: 16 KPSSKRNSDARRTSRNVCSNEERKRRKYFHMLYL 49
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 29.5 bits (67), Expect = 0.53
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ +K + ++ + +K+K K
Sbjct: 229 WASAGQKVGLRAARRTGLVRGGQKEKMAMKA 259
Score = 26.0 bits (58), Expect = 9.7
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKK 188
R ++ + +K+K K
Sbjct: 239 RAARRTGLVRGGQKEKMAMKAAA 261
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 29.8 bits (66), Expect = 0.55
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K K KK KK+ +K Y F+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKEWYDFR 35
Score = 26.7 bits (58), Expect = 5.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K KK KK+ +K+
Sbjct: 4 GKNPGLKAGGGKKGAKKRTIDPLSRKE 30
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.6 bits (66), Expect = 0.56
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
D T K KK+ K+ KK +++K L
Sbjct: 250 DPTMAKSTKKEPATHKRYNLKKLTYEQRKASL 281
Score = 26.9 bits (59), Expect = 4.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 173 KKKKKKKKKKKKKKKKKKKRLYIFKK 198
K KK+ K+ KK Y +K
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRK 278
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 29.0 bits (65), Expect = 0.58
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+K +K+ + +I
Sbjct: 4 KKTAPVQKEVISYGPPNVGANENVFGVCHIM 34
Score = 28.3 bits (63), Expect = 1.1
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKK 189
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 1.1
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKK 190
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 1.1
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKK 191
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 27.9 bits (62), Expect = 1.4
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKK 188
+ KK +K+ +
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANE 25
Score = 27.5 bits (61), Expect = 1.8
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKR 192
KK +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 27.1 bits (60), Expect = 2.5
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIF 196
KK +K+ +F
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 29.2 bits (65), Expect = 0.82
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 172 KKKKKKKKKKKKKKKKKKKKRLY 194
KK+ KK K KK K + +++L
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLI 136
Score = 28.0 bits (62), Expect = 1.9
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 129 KINQCILKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
KI+ + + F M ++NL + KK+ KK K KK K + ++K
Sbjct: 85 KISTVVSSKEVNKFQ---------MAYSNLLRANMDGLKKRDKKNKSKKSKPAQGGEQKL 135
Query: 189 KK 190
Sbjct: 136 IS 137
Score = 27.3 bits (60), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
KK+ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 27.3 bits (60), Expect = 3.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
KK+ KK K KK K + ++K +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSA 143
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 29.1 bits (64), Expect = 0.93
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
RKK KK KK KK KK K+ KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 29.1 bits (64), Expect = 1.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
G + KK KK KK KK +K+
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 29.1 bits (64), Expect = 1.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G KK ++KK KK KK KK KK
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 29.1 bits (64), Expect = 1.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R + KK KK KK KK KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 28.7 bits (63), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
S +K KK ++KK KK KK KK + K
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Score = 28.7 bits (63), Expect = 1.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ + KK ++KK KK KK KK K+
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 28.7 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
R+KK KK KK KK KK + K
Sbjct: 372 PRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 28.3 bits (62), Expect = 1.7
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 157 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R G KK KK KK KK K+
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 28.3 bits (62), Expect = 1.9
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
G +K KK KK KK +KK
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 27.9 bits (61), Expect = 2.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ ++KK KK KK KK KK
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAA 396
Score = 27.9 bits (61), Expect = 2.6
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ +K KK KK KK KK
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 27.1 bits (59), Expect = 4.7
Identities = 13/86 (15%), Positives = 30/86 (34%)
Query: 106 ETLQKTTVIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFRITMMFANLRNGDGTS 165
+T+++ T+++ K + + ++ K + +
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+K KK KK +KK ++KK
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 27.1 bits (59), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KK KK +KK ++K+
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 26.0 bits (56), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
KK KK KK +KK +++
Sbjct: 391 VGKKAAATKKPAADKKPAEKKPTTEEK 417
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 28.3 bits (63), Expect = 0.95
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K KK K ++ K K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKS 33
Score = 27.9 bits (62), Expect = 1.6
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKK 189
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 27.9 bits (62), Expect = 1.6
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKK 190
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 26.8 bits (59), Expect = 3.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
K ++ K K K K+K KK
Sbjct: 9 KADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.4 bits (58), Expect = 4.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K ++ K K K K+K K++
Sbjct: 10 ADGKTQQALKVAKAVKSGSIKRKSKKIR 37
Score = 26.0 bits (57), Expect = 6.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKK----KKKKKKR 192
+ KK K ++ K K K +K KK R
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSKKIR 37
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 28.1 bits (62), Expect = 0.99
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKR 192
++K+K+ KK K+K+ KKKK+ R
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.1 bits (57), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKK 188
RK+K+ KK K+K+ KKKK+ +
Sbjct: 81 ERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.1 bits (57), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 25.7 bits (56), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKK 189
+K+K+ KK K+K+ KKKK+ +
Sbjct: 79 VDERKRKESPKKNKEKRMKKKKRLNR 104
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 27.7 bits (62), Expect = 0.99
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
S K K KK+ +++ +K K K +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLR 32
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
KK K K K K+KKKK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKK 27
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
KK K K K K+KKKK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKK 27
Score = 27.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
S K K K+KKKK K K+K+K +F K T
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSVLFDKAT 47
Score = 27.7 bits (61), Expect = 1.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
D K K K+KKKK K K+K+++
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKV 37
Score = 26.9 bits (59), Expect = 2.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K K K+KKKK K K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 26.5 bits (58), Expect = 3.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K K K K K+KKKK +
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSK 30
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 27.7 bits (61), Expect = 1.1
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
++ KK KKK KK K + + I +
Sbjct: 9 KAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEK 46
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
K++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
Score = 27.3 bits (60), Expect = 1.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K KK KKK KK +
Sbjct: 8 SKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 26.9 bits (59), Expect = 2.3
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+ K K KK KKK KK
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSKKS 31
Score = 26.9 bits (59), Expect = 2.6
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
S+ K KK KKK KK K R
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDRA 36
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
+++ K K KK KKK K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSK 29
Score = 26.1 bits (57), Expect = 4.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKR 192
K++ K K KK KK+
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 145 NGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKK 183
+GF + N + +K KKK+++ K K+K
Sbjct: 68 SGFNVSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 106
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.0 bits (65), Expect = 1.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T K+ ++K + KK+ K + +
Sbjct: 630 TWGKQGGGTQQKAEGKKRPSTKGRGPDEV 658
Score = 26.7 bits (59), Expect = 6.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K K+ ++K + KK+ K R
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGR 653
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K K K K KK + KKKK KK+ +K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 27.8 bits (61), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
+ K K K KK + KKKK KK++++ +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKW 29
Score = 27.0 bits (59), Expect = 4.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+ + +K+ K++K K K++ +K + Y F
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKEYGF 166
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
S K+KK +K+ K+ +KK+K K +
Sbjct: 152 SILKRKKFEKELKELQKKQKHKLEHHHH 179
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
Score = 25.9 bits (58), Expect = 7.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
RKK +K+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHHHH 181
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 28.5 bits (63), Expect = 1.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKK 189
+ K +KK K++ + KK ++ K
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTK 276
Score = 28.1 bits (62), Expect = 1.8
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++ + K +KK K++ + KK ++ K +
Sbjct: 239 IYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERA 283
Score = 26.6 bits (58), Expect = 6.1
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 137 DNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
D+L Y + E + A+ + K++ + KK ++ K K+++ R+
Sbjct: 234 DSLEDIYTSAHE----AIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARV 286
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 28.5 bits (63), Expect = 1.5
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
R K K K +K + + Y
Sbjct: 23 RGLWAIKAKHGGALPKAEKPAAIAEPKFY 51
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 28.6 bits (64), Expect = 1.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 156 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
L+ + K+K K+KK+K
Sbjct: 472 LGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 27.8 bits (61), Expect = 1.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K K+ K + KK KKK K K +
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 27.1 bits (59), Expect = 3.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
+KK K+ K + KK KKK
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKK 29
Score = 27.1 bits (59), Expect = 3.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
+KK K+ K + KK KKK
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKK 29
Score = 26.7 bits (58), Expect = 3.3
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
K + KK KKK K K K K +K
Sbjct: 14 EAIAKAAQAKKGGKKKWTKGKAKDKVNHAVFIEKKN 49
Score = 26.7 bits (58), Expect = 3.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +KK K+ K + KK KKK K +
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGK 34
Score = 26.7 bits (58), Expect = 3.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K+ K + KK KKK K K K ++
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
Score = 25.9 bits (56), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++ +KK K+ K + KK KK+
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKK 29
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.9 bits (63), Expect = 1.6
Identities = 2/28 (7%), Positives = 13/28 (46%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K++ + + + + +K+ + +
Sbjct: 160 PKPKREAFLEANRAELVRFQKEARALLK 187
Score = 27.9 bits (63), Expect = 1.6
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K++ + + + + +K+ + K L
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKEL 189
Score = 27.2 bits (61), Expect = 2.9
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKK 189
+ + + + +K+ + K+ +
Sbjct: 168 LEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 3.0
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
+ + + + +K+ + K+ +
Sbjct: 168 LEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 3.0
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
+ + + + +K+ + K+ +
Sbjct: 168 LEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 4.4
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K++ + + + + +K+ + L +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 5.2
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R+ + + + + +K+ + K+
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELS 190
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.0 bits (63), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R +K + K+K KKK+K K+ ++R
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 27.6 bits (61), Expect = 1.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
R G +K ++++K+KK + KK K+
Sbjct: 93 RYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRL 125
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.0 bits (62), Expect = 1.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
T +++ K +++ +KKK +KK KK++L
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Score = 27.6 bits (61), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K +++ +KKK +KK KK+K R
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 26.0 bits (57), Expect = 8.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K +++ +KKK +KK KK+K +
Sbjct: 155 QIVPKPEEEVAQKKKISQKKLKKQKLM 181
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 27.4 bits (59), Expect = 1.9
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ + K + R
Sbjct: 111 KRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.0 bits (58), Expect = 3.0
Identities = 1/26 (3%), Positives = 6/26 (23%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ + K + +
Sbjct: 111 KRLANEAGSTGSAPATGGVXKPHRYR 136
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 27.4 bits (60), Expect = 2.0
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R ++ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPF 43
Score = 25.4 bits (55), Expect = 9.8
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 189
L + ++ + + KK+ K
Sbjct: 9 LNSARKLRVHRRNNRWAENNYKKRLLGTAFKS 40
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 28.3 bits (63), Expect = 2.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 3 HVSLTISQLINIIPITQSSPDASLLEEF 30
HV+ +S++ I PIT SS +++
Sbjct: 15 HVAYAMSEVAAIYPITPSSTMGEEADDW 42
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 2.1
Identities = 8/57 (14%), Positives = 31/57 (54%)
Query: 136 KDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K F+ +F + A N + +K++++++ + + + K+++++++K ++
Sbjct: 371 KIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRK 427
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 27.8 bits (63), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 37 TAMFTLSGFISSAIHGHGRSTADRQFYFVNSR 68
T F ++G+IS+A + + F+N R
Sbjct: 238 TLAFKMNGYISNANYSVKKCI---FLLFINHR 266
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ K KK K K K K+
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKK 471
Score = 27.6 bits (62), Expect = 2.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K KK K K K KK
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKK 471
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K KK K K K KK K +
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 26.4 bits (59), Expect = 6.3
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ K KK K K K +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVK 470
Score = 26.4 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKK 186
+ TS KK K K K KK K K
Sbjct: 451 NTTSVKKAKGKNPKNTTSVKKAKGK 475
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K K K +++ K + + +KR +FK+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 27.5 bits (60), Expect = 2.3
Identities = 3/29 (10%), Positives = 16/29 (55%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+K+K ++ K+ ++++ + + + +
Sbjct: 137 QDVRKRKTREAAKRNRRRRPQARFTPQNK 165
Score = 27.5 bits (60), Expect = 2.4
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
RK+K ++ K+ ++++ + + + K+
Sbjct: 140 RKRKTREAAKRNRRRRPQARFTPQNKQ 166
Score = 26.8 bits (58), Expect = 4.7
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ +K+K ++ K+ ++++ + R
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARF 160
Score = 26.4 bits (57), Expect = 5.5
Identities = 3/30 (10%), Positives = 16/30 (53%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ +K+K ++ K+ ++++ + + +
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQN 164
Score = 26.4 bits (57), Expect = 5.9
Identities = 4/33 (12%), Positives = 19/33 (57%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
++K ++ K+ ++++ + + + K+ + K+
Sbjct: 141 KRKTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
Score = 26.0 bits (56), Expect = 6.7
Identities = 3/26 (11%), Positives = 15/26 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +K+K ++ K+ ++++ + +
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARF 160
Score = 25.6 bits (55), Expect = 9.5
Identities = 4/27 (14%), Positives = 17/27 (62%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
++++ + + +K+K ++ K+ ++R
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRR 154
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L
1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M*
1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Length = 114
Score = 26.8 bits (60), Expect = 2.3
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFK--KH 199
++K + ++K + + RL +++ KH
Sbjct: 3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKH 37
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.6 bits (61), Expect = 2.4
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 140 PVFYKNGFEFRITMMFANLRNGDGTSRKK--------------KKKKKKKKKKKKKKKKK 185
PVF KN F + ++ + +G K+ +K++KK+ ++KK+
Sbjct: 60 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 119
Query: 186 KKKKKKRLYIFK 197
+ +++K +K
Sbjct: 120 RLEREKFEEDYK 131
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.9 bits (61), Expect = 2.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
T+ + K + KK KK+K +++KKK+ +
Sbjct: 817 TTARAKARAKKTKKEKGPNEEEKKKEHE 844
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 27.8 bits (61), Expect = 2.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
K K+ K KK +KK+ +K + K
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKEWFDIK 33
Score = 25.9 bits (56), Expect = 9.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
K K+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 25.9 bits (56), Expect = 9.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K K+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 26.3 bits (57), Expect = 2.7
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 166 RKKKKKKKKKKKKKKKKK 183
K+ ++ K K++K++K
Sbjct: 73 CKEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 168 KKKKKKKKKKKKKKKKK 184
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 169 KKKKKKKKKKKKKKKKK 185
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 170 KKKKKKKKKKKKKKKKK 186
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 171 KKKKKKKKKKKKKKKKK 187
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 172 KKKKKKKKKKKKKKKKK 188
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 173 KKKKKKKKKKKKKKKKK 189
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 174 KKKKKKKKKKKKKKKKK 190
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 175 KKKKKKKKKKKKKKKKK 191
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 25.5 bits (55), Expect = 6.6
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 176 KKKKKKKKKKKKKKKKR 192
K+ ++ K K++K+++
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.9 bits (63), Expect = 2.7
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
RN + ++K+ + K+ + ++
Sbjct: 461 RNIENWVQRKRPGSPAAQASKRASEMACQQ 490
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.2 bits (60), Expect = 2.8
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
K++ K +KK + +++ +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAA 178
Score = 26.8 bits (59), Expect = 4.2
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRL 193
K +KK + +++ + +KR+
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQKRI 182
Score = 26.5 bits (58), Expect = 5.0
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
T +++ K +KK + +++ + +
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQ 179
Score = 25.7 bits (56), Expect = 8.5
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKK 190
K +KK + +++ + +K+
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 25.7 bits (56), Expect = 8.5
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKK 191
K +KK + +++ + +K+
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 25.7 bits (56), Expect = 9.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRL 193
K++ K +KK + +++ +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIA 177
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 27.5 bits (60), Expect = 3.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+R K +K+K K+ K ++ K K + K
Sbjct: 350 ARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYK 383
Score = 26.7 bits (58), Expect = 6.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
GT+RK + + K +K+K K+ K
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKL 366
Score = 26.7 bits (58), Expect = 6.6
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
F R + + K +K+K K+ K ++ K
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAK 373
Score = 26.3 bits (57), Expect = 7.0
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
N + +K + + K +K+K K+ K
Sbjct: 333 LNPYFGTARKMATLAEAARIKARKEKLDSKRTKLS 367
Score = 26.3 bits (57), Expect = 7.4
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ + K +K+K K+ K ++ K +
Sbjct: 342 KMATLAEAARIKARKEKLDSKRTKLSPEEAAKVK 375
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.7 bits (61), Expect = 3.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
+++KK + K++KK K+K+ + Y +
Sbjct: 113 VQREKKLSRTKEEKKAIKEKQDAEAEPYRY 142
Score = 26.9 bits (59), Expect = 5.0
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
+++KK + K++KK K+K+ ++
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEPYR 141
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 26.5 bits (58), Expect = 3.1
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R K+ + K K+ K K
Sbjct: 2 RLTKEAAAVAEGKSKQDASPKPYAVKY 28
Score = 25.3 bits (55), Expect = 7.5
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
++ K+ + K K+ K +
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAV 26
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.4 bits (61), Expect = 3.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+++ KK+KK+ + KKK + L
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTL 502
Score = 27.0 bits (60), Expect = 5.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K +++ KK+KK+ + KKK
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAA 496
Score = 26.6 bits (59), Expect = 7.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ KK+KK+ + KKK + + +
Sbjct: 477 EQEPSKKQKKQHEGSKKKAAARDVTLENR 505
Score = 26.2 bits (58), Expect = 7.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +++ KK+KK+ + KKK R
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAAR 498
Score = 26.2 bits (58), Expect = 7.6
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+++ KK+KK+ + KKK + + + +
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENR 505
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 27.4 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
RK ++ K KK K K+ KK +L
Sbjct: 255 RKNPERVKSTKKNDKPKRDHKKFYPTKL 282
Score = 27.4 bits (60), Expect = 3.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKK 187
R K KK K K+ KK K
Sbjct: 259 ERVKSTKKNDKPKRDHKKFYPTK 281
Score = 26.6 bits (58), Expect = 5.6
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K KK K K+ KK K +K
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQRK 288
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 27.5 bits (61), Expect = 3.6
Identities = 13/100 (13%), Positives = 34/100 (34%)
Query: 76 SGQAEGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTVIKSQKLVVPQNLHLTKINQCIL 135
S + I + + + + Y+ +T ++ + K +++ I+
Sbjct: 337 SKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKII 396
Query: 136 KDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKK 175
+L FY+ ++ + D S + K + K
Sbjct: 397 NGDLLRFYEPKGFKKVNPSDYDYTKHDEDSSETSKDNEDK 436
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 26.5 bits (58), Expect = 3.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K K K +++ K + KR +FK+
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKE 30
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.9 bits (60), Expect = 3.7
Identities = 2/22 (9%), Positives = 11/22 (50%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKK 185
+ ++K+ +++K ++
Sbjct: 177 VVLQPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 168 KKKKKKKKKKKKKKKKKKK 186
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 169 KKKKKKKKKKKKKKKKKKK 187
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 170 KKKKKKKKKKKKKKKKKKK 188
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 171 KKKKKKKKKKKKKKKKKKK 189
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 172 KKKKKKKKKKKKKKKKKKK 190
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 173 KKKKKKKKKKKKKKKKKKK 191
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 26.1 bits (57), Expect = 4.2
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
F L + ++ ++++K++ K KR
Sbjct: 69 FCYLLKQLVAEDQITIQEWNYIRQEEKERINAKNILKR 106
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 26.6 bits (59), Expect = 4.5
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ ++ K +++ +KK + K
Sbjct: 129 AAASVVAREMKIVTERRAEKKADSRVTYSK 158
Score = 25.4 bits (56), Expect = 9.3
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKK 188
+R+ K +++ +KK + K
Sbjct: 130 AASVVAREMKIVTERRAEKKADSRVTYSK 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 26.5 bits (59), Expect = 4.7
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 166 RKKKKKKKKKKKKKKKKKKKK 186
R ++ K+K +++ +K+K+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKE 191
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 25.9 bits (56), Expect = 4.9
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKK 186
T+ +K+++ +K +++ + K +
Sbjct: 80 TNLQKQRELQKANQEQYAEGKMR 102
Score = 25.9 bits (56), Expect = 5.2
Identities = 5/28 (17%), Positives = 16/28 (57%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKK 185
L+ D +K+++ +K +++ + K +
Sbjct: 75 LKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 25.1 bits (54), Expect = 9.4
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 172 KKKKKKKKKKKKKKKKKKKKR 192
+K+++ +K +++ + K R
Sbjct: 82 LQKQRELQKANQEQYAEGKMR 102
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 27.2 bits (60), Expect = 5.0
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K++ + ++++K + + K+ R
Sbjct: 993 PSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 26.3 bits (59), Expect = 5.1
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 165 SRKKKK--KKKKKKKKKKKKKKKKKKKKKR 192
++ KK + K + + K +
Sbjct: 157 TQVDKKKVRPKLNELIRDYKATHSLEHHHH 186
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.4 bits (59), Expect = 5.2
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K+ K+K+ + K K
Sbjct: 170 TRRNMSLNIDGKRSGKQKRTDRVKGK 195
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 26.7 bits (58), Expect = 5.6
Identities = 2/33 (6%), Positives = 7/33 (21%)
Query: 160 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+G ++ + K+
Sbjct: 12 SGLVPRGSHMASMTGGQQMGRGSSSVLASCPKK 44
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 26.5 bits (58), Expect = 5.7
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
RK + KK+ KK
Sbjct: 160 RKVSSAEYYAKKRAFTKKVASANATA 185
>3ffd_P PTH-RP, PTHRP, parathyroid hormone-related protein; PTHRP complexed
to FAB, alternative splicing, calcium, cleavage on PAIR
of basic residues; 2.00A {Homo sapiens} PDB: 1bzg_A
Length = 108
Score = 25.9 bits (56), Expect = 5.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 138 NLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
N PV + + E R N K KKKK K K+K+++KKK++ R
Sbjct: 54 NHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 108
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.5 bits (58), Expect = 5.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRL 193
K +K+ K KK K KK K +
Sbjct: 155 VAAKVRKEAPKDAAKKVPKTKKGKLAI 181
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 26.1 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
KKK KK+K K K +K K + ++ K
Sbjct: 5 VAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDE 37
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 25.4 bits (56), Expect = 6.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKR 192
++ KK+ +KKK KR
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 26.2 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
+ K K+KKK +K +K +K K + F K
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSAGTQSSKFSK 140
Score = 25.5 bits (55), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R++K K K+KKK +K +K +K K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKAKS 130
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 26.9 bits (58), Expect = 6.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
M + + + + K+ K +K K +K+K K
Sbjct: 1 MHHHHHHAAAMNEHYTESDIKRNHKTEKNKTEKEKFKD 38
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.3 bits (57), Expect = 7.0
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 158 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKK 187
L+ D R + + + K ++ K+
Sbjct: 237 LKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 26.1 bits (57), Expect = 7.2
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
++ K+K + K++K+++K +K K+
Sbjct: 144 KEIKEKYPRPPKRRKEERKGRKPWKE 169
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 26.3 bits (58), Expect = 7.2
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKH 199
KKK+ + + K+ K +KK+ FK
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDK 265
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 26.0 bits (57), Expect = 8.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
R+ + K KK K+ +KK+ L K
Sbjct: 159 RRARAKTYHDKKVKQADARKKELAAPALKAIKD 191
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 25.8 bits (56), Expect = 8.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKK 191
R+ ++ K++ KK K +KK KK +
Sbjct: 108 REAALREIKERIKKTKDEKKAKKAEV 133
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 25.8 bits (57), Expect = 8.8
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 154 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK------KKRLYIFK--KH 199
FA + + + K K +++ + + + +KK + RL +F+ KH
Sbjct: 23 KFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKH 76
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 25.9 bits (57), Expect = 9.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
+S +K +KKKKKK K + +
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGETL 394
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 26.2 bits (58), Expect = 9.4
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
G+S + +K KK R
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMQKPIKKDPNRY 32
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 25.8 bits (56), Expect = 9.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
RK+K K +KKK+ + +K+ +K
Sbjct: 160 RKEKAKIHYRKKKQLMRLRKQAEKN 184
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 24.7 bits (53), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
+ K +K+ K +KK K +K K + KR+
Sbjct: 11 AGKVRKQTPKVEKKDKPRKTPKGRSYKRI 39
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 25.0 bits (55), Expect = 9.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKR 192
+ ++ +K KK KR
Sbjct: 3 GASDRTGVRRPRKAKKDPNAPKR 25
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 25.4 bits (55), Expect = 9.9
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKR 192
R++ + K+ KK K+ KK +
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAK 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,935,557
Number of extensions: 173746
Number of successful extensions: 5096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3474
Number of HSP's successfully gapped: 737
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)