RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13676
(200 letters)
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 63.7 bits (155), Expect = 2e-13
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 74 KVSGQ-AEGFIIVKYDSDLFIIDQHATDEKYNFETL-QKTTVIKSQKLVVPQNLHLTKIN 131
+V +++ D ++ ++ + L + +Q L++P L ++
Sbjct: 5 RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 64
Query: 132 QCILKDNLPVFYKNGFEFRITMMFANLR 159
+ L+ + G +F+ +R
Sbjct: 65 KSALEKAQSALAELGIDFQSDAQHVTIR 92
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 55.0 bits (132), Expect = 1e-10
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 10 QLINIIPITQSSPDASLLEEFRIPP--DITAMFTLSGFISSAIHGHGRSTADRQFYFVNS 67
QL ++IP Q P S+ EE+ + + +F +SGFIS HG GRS+ DRQF+F+N
Sbjct: 4 QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINR 63
Query: 68 RPCEPSKVS 76
RPC+P+KV
Sbjct: 64 RPCDPAKVC 72
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 37.2 bits (86), Expect = 2e-04
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 40 FTLSGFISSAIHGHGRSTADRQFYFVNSRPCEPSKVSGQAEGFII 84
TL G+++ H + A+ Q+ +VN R ++
Sbjct: 18 LTLRGWVADPNH-TTPALAEIQYCYVNGRMMRDRLINHAIRQACE 61
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.1 bits (68), Expect = 0.15
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 140 PVFYKNGFE-FRITM------MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+F KN F+ +R M + NL D T + K + + +K+ K++K K K++
Sbjct: 72 EIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN 131
Query: 193 LYIFKKHT 200
+ K++
Sbjct: 132 EKLLKEYG 139
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.9 bits (67), Expect = 0.20
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
++ +K+++ ++K ++ K K+K +K+RL
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 24.9 bits (54), Expect = 6.7
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ K+ +K+++ ++K ++ K K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEK 326
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.24
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 140 PVFYKNGFEFRITMMFANLRNGDGTSRK--------------KKKKKKKKKKKKKKKKKK 185
PVF KN F + ++ + +G K + +K++KK+ ++KK+
Sbjct: 60 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 119
Query: 186 KKKKKKRLYIFK 197
+ +++K +K
Sbjct: 120 RLEREKFEEDYK 131
Score = 26.6 bits (59), Expect = 2.1
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKRLY 194
K++KK+ ++KK+ + +++K ++ +
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYKF 132
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Yeast (Candida
tropicalis) [TaxId: 5482]}
Length = 124
Score = 28.1 bits (62), Expect = 0.34
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 13 NIIPITQSSPDASLLEEFRIPPDITAMFTLSG 44
N + +PD + + + D+ A++ LSG
Sbjct: 1 NQFLAPKRAPDYQV--DVPVSEDLAALYRLSG 30
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 28.3 bits (63), Expect = 0.36
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKRLYIFKK 198
K K K K +++ K + + +KR +FK+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRL 193
K K K K +++ K + + +K+ L
Sbjct: 2 KNKGKGGKNRRRGKNENESEKREL 25
Score = 25.6 bits (56), Expect = 2.9
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRL 193
K K K K +++ K + + +K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVF 27
Score = 25.6 bits (56), Expect = 3.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKKRLY 194
K K K K +++ K + + +K++ ++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVF 27
Score = 24.8 bits (54), Expect = 6.3
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKK 189
K K K K +++ K + + +K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 24.4 bits (53), Expect = 8.3
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKK 191
K K K +++ K + + +K++ K
Sbjct: 4 KGKGGKNRRRGKNENESEKRELVFK 28
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 26.8 bits (59), Expect = 0.79
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFK 197
KK + ++ + ++K ++ RL + +
Sbjct: 1 KKSARIRRATRARRKLQELGATRLVVHR 28
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 25.9 bits (57), Expect = 1.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G G ++K + K +K K K + +
Sbjct: 10 GGGNAQKSAMARAKNLEKAKAAGKGSQLEAN 40
Score = 25.9 bits (57), Expect = 1.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYI 195
G+ + K +K K K + + KK + I
Sbjct: 12 GNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSI 46
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 26.8 bits (59), Expect = 1.2
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
K KK K + ++ K + HT
Sbjct: 80 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHT 112
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 26.6 bits (59), Expect = 1.4
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 191
G SR + ++++KK+ +K +K K
Sbjct: 56 GNSRGRARERQKKRAYGHQKGAGSRKGKA 84
Score = 24.7 bits (54), Expect = 6.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
R ++++KK+ +K +K K R
Sbjct: 60 GRARERQKKRAYGHQKGAGSRKGKAGARQ 88
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 25.9 bits (56), Expect = 2.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 15 IPITQSSPDASLLEEFRIPPDITAMFTLSG 44
+ I PDA L + A++ LSG
Sbjct: 2 VAIPNRPPDAVL--TDTTSLNQAALYRLSG 29
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.3 bits (57), Expect = 2.5
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 164 TSRKKKKKKKKKKKKKKKKKKKKKKK 189
R K K++ + + + + +K+
Sbjct: 156 FERLPKPKREAFLEANRAELVRFQKE 181
Score = 25.5 bits (55), Expect = 4.0
Identities = 2/25 (8%), Positives = 12/25 (48%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKK 186
+ + K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 5.8
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKK 190
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 5.8
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKK 191
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 24.7 bits (53), Expect = 8.0
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 171 KKKKKKKKKKKKKKKKKKKKKR 192
K K++ + + + + +K
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 25.6 bits (56), Expect = 2.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKK 189
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 2.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKK 190
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 2.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 169 KKKKKKKKKKKKKKKKKKKKKKK 191
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 2.9
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 165 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
K+ + + K+ +KR
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKR 100
Score = 24.4 bits (53), Expect = 4.8
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKKKKK 188
G ++ + + K+ +K++
Sbjct: 76 GILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 26.2 bits (57), Expect = 3.1
Identities = 3/50 (6%), Positives = 15/50 (30%)
Query: 151 ITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+T ++ + + + + +++ + + HT
Sbjct: 97 LTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHT 146
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.7 bits (54), Expect = 3.1
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 175 KKKKKKKKKKKKKKKKKRL 193
+K KKK L
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
Score = 24.7 bits (54), Expect = 3.5
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 165 SRKKKKKKKKKKKKKKKK 182
S +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 167 KKKKKKKKKKKKKKKKKK 184
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 168 KKKKKKKKKKKKKKKKKK 185
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 169 KKKKKKKKKKKKKKKKKK 186
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 170 KKKKKKKKKKKKKKKKKK 187
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 171 KKKKKKKKKKKKKKKKKK 188
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 172 KKKKKKKKKKKKKKKKKK 189
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 173 KKKKKKKKKKKKKKKKKK 190
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 5.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 174 KKKKKKKKKKKKKKKKKK 191
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.0 bits (54), Expect = 3.6
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 155 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+ L + + + K KKK + K
Sbjct: 79 WEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.1 bits (54), Expect = 3.7
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 131 NQCILKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 190
+C++ + R D K+ K+K ++ ++K+++++ +
Sbjct: 46 GKCVIDKVTRNQCQE---CRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELE 102
Query: 191 K 191
K
Sbjct: 103 K 103
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.7 bits (56), Expect = 4.0
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +K++ K K+ + ++
Sbjct: 206 SWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 236
Score = 25.4 bits (55), Expect = 6.0
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 124 NLHLTKINQCILKDNLPVFYKNGFEFRITMMFANLRNGDGTSRKKKKKKKKKKKKKKKKK 183
N L K + L ++ + N + + +K++ K K+ +
Sbjct: 176 NDILCK--TYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 233
Query: 184 KKKKKKKK 191
+K +
Sbjct: 234 IEKITPIE 241
Score = 25.0 bits (54), Expect = 6.9
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 162 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
D + +K++ K K+ + +K + F
Sbjct: 209 DNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESF 243
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 24.5 bits (53), Expect = 4.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 168 KKKKKKKKKKKKKKKKKKKKKKKKRLYIF 196
++ KK+ +KKK K+ Y+F
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMF 30
Score = 23.7 bits (51), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 164 TSRKKKKKKKKKKKKKKKKKK 184
T R+ KK+ +KKK K+
Sbjct: 3 TPREPKKRTTRKKKDPNAPKR 23
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 24.5 bits (53), Expect = 4.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 163 GTSRKKKKKKKKKKKKKKKKKKK 185
G+S K ++ K +K K+
Sbjct: 1 GSSGSSGKPSQEGGKGGSEKPKR 23
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 24.5 bits (53), Expect = 5.0
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 172 KKKKKKKKKKKKKKKKKKKKRLYIFK 197
++K + ++K + + RL +++
Sbjct: 1 RRKLRTRRKVRTTTAASGRLRLSVYR 26
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 24.3 bits (53), Expect = 5.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 161 GDGTSRKKKKKKKKKKKKKKKKKKK 185
D +KK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 23.9 bits (52), Expect = 7.8
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 166 RKKKKKKKKKKKKKKKKKKKKKKKK 190
++ KKK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIR 92
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 23.9 bits (52), Expect = 9.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 170 KKKKKKKKKKKKKKKKKKKKKKRLYIFKKHT 200
+K ++K +KK K K +R T
Sbjct: 8 RKGREKVRKKSKVPALKGAPFRRGVCTVVRT 38
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.3 bits (50), Expect = 9.5
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 159 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRL 193
G K + KKK K KK L
Sbjct: 3 SGSSGIHHLPPVKAPLQTKKKIMKHCFLCGKKTGL 37
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 24.0 bits (51), Expect = 9.9
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 167 KKKKKKKKKKKKKKKKKKKKKKKKKR 192
+ +K+ KK + +++ K K K R
Sbjct: 88 EVEKEALKKIIEDQQESLNKWKSKGR 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,622
Number of extensions: 36555
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 218
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)