BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13682
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 3 TLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAE 62
TLR DD+ + +N L E Y F++++L + F VA ++GYIM + E
Sbjct: 14 TLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVA-IVDNSVVGYIMPRIE 72
Query: 63 -GHGDKWH-------GHVTALTVAPDYRRLGIAAELM-SWLEDISEKKRAYFVDLFVRVS 113
G + GHV ++ V +YRR GIA L+ + ++ + A + L VRVS
Sbjct: 73 WGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVS 132
Query: 114 NTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKAL 151
N AI +Y++L + + + YY+ EDAY M + L
Sbjct: 133 NYPAIALYEKLNFKKVKVLKGYYADG--EDAYLMARPL 168
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 54 MGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAY-FVDLFVRV 112
+G + + + ++ ++ L YRRLGI ++++ + +I EK + + L V++
Sbjct: 56 VGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQI 115
Query: 113 SNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDV 172
SN AI Y++ G+ + T YY DA+ ++K L +P Q +
Sbjct: 116 SNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK--------VPSGQNADVQKT 167
Query: 173 DN 174
DN
Sbjct: 168 DN 169
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 54 MGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAY-FVDLFVRV 112
+G + + + ++ ++ L YRRLGI + ++ + +I EK + + L V++
Sbjct: 57 VGAVCCRVDHSQNQKRLYIXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQI 116
Query: 113 SNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDV 172
SN AI Y++ G+ + T YY DA+ ++K L +P Q +
Sbjct: 117 SNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK--------VPSGQNADVQKT 168
Query: 173 DN 174
DN
Sbjct: 169 DN 170
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 40 PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISE 99
P++ +A+ G+++G+ + + + H + P YR G+ A L D +
Sbjct: 59 PQFVAIAD---GDVIGWCDIRRQDRATRAHCGTLGXGILPAYRNKGLGARLXRRTLDAAH 115
Query: 100 KKRAYFVDLFVRVSNTVAITMYKRLGY 126
+ + ++L V N AI +Y+++G+
Sbjct: 116 EFGLHRIELSVHADNARAIALYEKIGF 142
>pdb|2AJ6|A Chain A, Crystal Structure Of A Putative Gnat Family
Acetyltransferase (Mw0638) From Staphylococcus Aureus
Subsp. Aureus At 1.63 A Resolution
Length = 159
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110
G+++ +I G +K ++ L V P +R+LGIA +L LE ++ A + +
Sbjct: 74 GQLIAFIWGHFSN--EKSXVNIELLYVEPQFRKLGIATQLKIALEKWAKTXNAKRISNTI 131
Query: 111 RVSNTVAITMYKRLGYIV 128
+N I++ K LGY V
Sbjct: 132 HKNNLPXISLNKDLGYQV 149
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134
+ V PD++R G+ L+ L D E + + L VR SN AI +Y+ LG+
Sbjct: 69 IAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATIRRN 128
Query: 135 YY-SGSPDEDAYDMRKALS 152
YY + EDA M +S
Sbjct: 129 YYPTAQGHEDAIIMALPIS 147
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 49 PTGEIMG---YIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYF 105
PTG I+G ++ G + GH+ + V P YR G+ L+ L +IS K Y
Sbjct: 73 PTGRIVGSASLMIQPKFTRGGRAVGHIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYK 132
Query: 106 VDLFVRVSNTVAITMYKRLGY 126
V L S+ ++ Y++LG+
Sbjct: 133 VILD---SSEKSLPFYEKLGF 150
>pdb|3KKW|A Chain A, Crystal Structure Of His-Tagged Form Of Pa4794 Protein
Length = 182
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDIS-EKKRAYFVDLF 109
G+++G+ HGD + + VAP R LG+A L+ +E+++ E+ +A + +
Sbjct: 81 GQVLGFANFYQWQHGD--FCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKIS 138
Query: 110 VRVSNTVAITMYKRLGY 126
+N + +Y +LGY
Sbjct: 139 CFNANAAGLLLYTQLGY 155
>pdb|3PGP|A Chain A, Crystal Structure Of Pa4794 - Gnat Superfamily Protein In
Complex With Accoa
Length = 162
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDIS-EKKRAYFVDLF 109
G+++G+ HGD + + VAP R LG+A L+ +E+++ E+ +A + +
Sbjct: 61 GQVLGFANFYQWQHGD--FCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKIS 118
Query: 110 VRVSNTVAITMYKRLGY 126
+N + +Y +LGY
Sbjct: 119 CFNANAAGLLLYTQLGY 135
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110
+I+G+I+ K + + ++ +TV YR LG+ L++ + +++ + L
Sbjct: 85 NQIIGFIVLKKNWNN---YAYIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLET 141
Query: 111 RVSNTVAITMYKRLGYIV 128
+ +N A Y++ G+++
Sbjct: 142 QNNNVAACKFYEKCGFVI 159
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
Length = 247
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 7 FTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKA 61
F+ D F N+N+ P E G F Q W +YF+ SP GE ++MG+
Sbjct: 152 FSLLDPFTMLNINV-PAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEV 205
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110
E+ G ++G+A H D +L V +YR LGI L+ L + ++K V +
Sbjct: 59 AEVDGKVVGEASLHKDGEF----SLVVHRNYRTLGIGTLLVKTLIEEAKKSGLSTVKFYT 114
Query: 111 RVSNTVAITMYKRLGY 126
NT I + ++LG+
Sbjct: 115 LPENTPXIKIGRKLGF 130
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 43 FQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102
F +A +P G+++G++ ++G + L V +R LG+ +EL + ++E
Sbjct: 50 FVLARTPDGQVIGFVNALSDGI---LAASIPLLEVQAGWRSLGLGSELXRRV--LTELGD 104
Query: 103 AYFVDLFVRVSNTVAITMYKRLG 125
Y VDL + + Y+RLG
Sbjct: 105 LYXVDL---SCDDDVVPFYERLG 124
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 47 ESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
E+ G + Y++ K E + ++ L V+ ++RR GIA L++ L+ + AY +
Sbjct: 85 EAVVGALAAYVLPKFEQ--PRSEIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVI 142
Query: 107 DLFVRVSNTVAITMYKRLG 125
+ + A+ +Y +LG
Sbjct: 143 YVQADYGDDPAVALYTKLG 161
>pdb|2JLM|A Chain A, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|B Chain B, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|C Chain C, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|D Chain D, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|E Chain E, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|F Chain F, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
Length = 182
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134
+ DYR LG++ LM+ L + + + + + +N +I ++++LG+I T+ +
Sbjct: 98 IHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQ 155
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
Length = 247
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 7 FTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGE 52
F+ D F N+N+ P E G F Q W +YF+ SP GE
Sbjct: 152 FSLLDPFTXLNINV-PAGEIKGWRFTRQSRRRWNDYFEERVSPFGE 196
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 66 DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLG 125
D G L V P++R GIA L++ LE + + + V N + Y+RLG
Sbjct: 66 DGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDXVLGXYERLG 125
Query: 126 Y 126
Y
Sbjct: 126 Y 126
>pdb|3TT2|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase From
Sphaerobacter Thermophilus
Length = 330
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 40 PEYFQVA-ESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDIS 98
PE + +A E+ +G I+G +G+ E G W G V V +R GIA L+ + +
Sbjct: 220 PELWLLAVETDSGHIVGTCLGQ-ETAGKGWIGSVG---VRRPWRGRGIALALLQEVFGVY 275
Query: 99 EKKRAYFVDLFVRV-SNTVAITMYKRLG-YIVYRTVL 133
++ V+L V S T A +Y+R G ++ +R VL
Sbjct: 276 YRRGVREVELSVDAESRTGAPRLYRRAGXHVKHRYVL 312
>pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
pdb|2PMQ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
Length = 377
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 116 VAITMYKRLGYIVYRTVLEYYS---GSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDV 172
+ + +++ LG + +V YYS PDE A R+AL + G S + +K RP ++
Sbjct: 117 LGVPVHELLGGALTDSVSSYYSLGVXEPDEAA---RQALEKQREGYSRLQVKLGARPIEI 173
Query: 173 D 173
D
Sbjct: 174 D 174
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 116 VAITMYKRLGYIVYRTVLEYYS---GSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDV 172
+ + +++ LG + +V YYS PDE A R+AL + G S + +K RP ++
Sbjct: 124 LGVPVHELLGGALTDSVSSYYSLGVMEPDEAA---RQALEKQREGYSRLQVKLGARPIEI 180
Query: 173 D 173
D
Sbjct: 181 D 181
>pdb|1VCJ|A Chain A, Influenza B Virus Neuraminidase Complexed With
1-(4-Carboxy-2-(3-
Pentylamino)phenyl)-5-Aminomethyl-5-Hydroxymethyl-
Pyrrolidin-2-One
Length = 389
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 55 GYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVR 111
G I G E +GDKW G + V ++R+ A+++ W K ++L+VR
Sbjct: 254 GSIAGPCESNGDKWLGGIKGGFV---HQRM--ASKIGRWYSRTMSKTNRMGMELYVR 305
>pdb|1B9T|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In Teh Active Site
pdb|1B9S|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1INV|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
pdb|1IVB|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
Length = 390
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 55 GYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVR 111
G I G E +GDKW G + V ++R+ A+++ W K ++L+VR
Sbjct: 255 GSIAGPCESNGDKWLGGIKGGFV---HQRM--ASKIGRWYSRTMSKTNRMGMELYVR 306
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 68 WHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
W + + R GI ++L+ W + ++++ + + L A+ Y++LG+
Sbjct: 84 WRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGF 142
>pdb|2ACI|A Chain A, Structure Of D166a Arginine Deiminase
pdb|2ACI|B Chain B, Structure Of D166a Arginine Deiminase
pdb|2ACI|C Chain C, Structure Of D166a Arginine Deiminase
pdb|2ACI|D Chain D, Structure Of D166a Arginine Deiminase
Length = 418
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
+ D LG+ +EL SWLE + +K A ++
Sbjct: 94 ITADSVGLGLTSELRSWLESLEPRKLAEYL 123
>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
Length = 418
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
+ D LG+ +EL SWLE + +K A ++
Sbjct: 94 ITADSVGLGLTSELRSWLESLEPRKLAEYL 123
>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
Length = 418
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
+ D LG+ +EL SWLE + +K A ++
Sbjct: 94 ITADSVGLGLTSELRSWLESLEPRKLAEYL 123
>pdb|1RXX|A Chain A, Structure Of Arginine Deiminase
pdb|1RXX|B Chain B, Structure Of Arginine Deiminase
pdb|1RXX|C Chain C, Structure Of Arginine Deiminase
pdb|1RXX|D Chain D, Structure Of Arginine Deiminase
Length = 421
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
+ D LG+ +EL SWLE + +K A ++
Sbjct: 97 ITADSVGLGLTSELRSWLESLEPRKLAEYL 126
>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
Length = 418
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFV 106
+ D LG+ +EL SWLE + +K A ++
Sbjct: 94 ITADSVGLGLTSELRSWLESLEPRKLAEYL 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,560,604
Number of Sequences: 62578
Number of extensions: 229509
Number of successful extensions: 654
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 35
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)