Query psy13682
Match_columns 175
No_of_seqs 207 out of 1701
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 17:48:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3234|consensus 100.0 5E-27 1.1E-31 145.9 12.4 172 1-172 1-172 (173)
2 PRK09491 rimI ribosomal-protei 99.9 8.7E-24 1.9E-28 136.6 16.6 145 1-151 1-146 (146)
3 KOG3139|consensus 99.9 7.4E-23 1.6E-27 128.4 15.4 139 11-151 26-164 (165)
4 PRK10140 putative acetyltransf 99.9 2.6E-22 5.7E-27 131.8 17.1 146 2-149 4-160 (162)
5 PRK10146 aminoalkylphosphonic 99.9 2.8E-23 6.1E-28 133.9 11.6 130 1-131 3-138 (144)
6 KOG3235|consensus 99.9 3.6E-23 7.8E-28 128.9 8.6 151 1-153 1-155 (193)
7 TIGR01575 rimI ribosomal-prote 99.9 8.6E-22 1.9E-26 124.8 14.3 131 11-147 1-131 (131)
8 TIGR03827 GNAT_ablB putative b 99.9 6.8E-22 1.5E-26 139.4 14.7 146 2-151 116-266 (266)
9 COG1247 Sortase and related ac 99.9 6E-21 1.3E-25 123.3 15.4 153 1-153 1-166 (169)
10 PRK03624 putative acetyltransf 99.9 3.7E-21 8.1E-26 123.2 14.4 126 1-131 2-130 (140)
11 PRK10809 ribosomal-protein-S5- 99.9 2.8E-20 6.1E-25 125.6 16.9 149 2-151 18-187 (194)
12 COG0456 RimI Acetyltransferase 99.9 1.6E-20 3.6E-25 125.0 14.2 138 2-139 12-162 (177)
13 TIGR02406 ectoine_EctA L-2,4-d 99.9 1.3E-20 2.7E-25 123.1 12.6 128 4-132 1-129 (157)
14 TIGR02382 wecD_rffC TDP-D-fuco 99.9 2.5E-20 5.4E-25 125.5 14.3 128 2-132 44-186 (191)
15 PF13420 Acetyltransf_4: Acety 99.9 4.9E-20 1.1E-24 120.2 14.3 132 4-137 1-145 (155)
16 PRK10975 TDP-fucosamine acetyl 99.8 6.5E-20 1.4E-24 123.9 14.3 128 3-133 48-190 (194)
17 PRK10151 ribosomal-protein-L7/ 99.8 1.8E-19 4E-24 120.2 16.0 149 2-153 11-178 (179)
18 PTZ00330 acetyltransferase; Pr 99.8 1.6E-19 3.4E-24 116.8 15.1 126 2-131 7-141 (147)
19 PRK15130 spermidine N1-acetylt 99.8 4.2E-19 9E-24 119.2 15.5 149 2-153 7-168 (186)
20 PRK07757 acetyltransferase; Pr 99.8 9.7E-20 2.1E-24 118.4 11.8 118 1-131 1-122 (152)
21 PRK10514 putative acetyltransf 99.8 3.4E-19 7.4E-24 115.0 13.0 133 1-147 1-141 (145)
22 TIGR03103 trio_acet_GNAT GNAT- 99.8 7.1E-19 1.5E-23 134.6 16.3 132 2-133 83-219 (547)
23 KOG3216|consensus 99.8 9E-19 2E-23 108.9 13.6 138 2-139 4-154 (163)
24 PRK07922 N-acetylglutamate syn 99.8 5.5E-19 1.2E-23 116.6 12.4 122 1-131 5-127 (169)
25 PF13523 Acetyltransf_8: Acety 99.8 1.7E-18 3.7E-23 112.6 14.6 129 4-133 1-143 (152)
26 PF00583 Acetyltransf_1: Acety 99.8 6.7E-19 1.4E-23 102.9 11.3 80 47-127 2-83 (83)
27 PLN02706 glucosamine 6-phospha 99.8 2.4E-18 5.2E-23 111.7 14.3 127 2-131 7-144 (150)
28 TIGR03585 PseH pseudaminic aci 99.8 2E-18 4.3E-23 112.7 13.6 141 3-147 2-155 (156)
29 PHA00673 acetyltransferase dom 99.8 1.9E-18 4.1E-23 110.2 12.0 124 6-131 11-146 (154)
30 PF13527 Acetyltransf_9: Acety 99.8 2.3E-18 5E-23 108.7 12.4 119 3-129 1-127 (127)
31 PRK09831 putative acyltransfer 99.8 2.2E-18 4.7E-23 111.5 9.1 129 2-150 1-144 (147)
32 TIGR01686 FkbH FkbH-like domai 99.8 1.6E-17 3.4E-22 120.1 14.1 123 2-129 187-319 (320)
33 PRK10562 putative acetyltransf 99.8 5.4E-17 1.2E-21 104.7 14.1 131 4-151 2-142 (145)
34 COG1246 ArgA N-acetylglutamate 99.8 6.7E-18 1.5E-22 106.2 9.3 122 2-131 1-123 (153)
35 PRK10314 putative acyltransfer 99.8 3.6E-18 7.8E-23 110.8 8.0 138 5-151 10-150 (153)
36 PF13673 Acetyltransf_10: Acet 99.8 2.8E-17 6E-22 102.2 11.5 87 28-126 31-117 (117)
37 TIGR03448 mycothiol_MshD mycot 99.8 5.5E-17 1.2E-21 116.2 14.6 130 2-132 150-289 (292)
38 COG3153 Predicted acetyltransf 99.8 5.1E-17 1.1E-21 105.3 12.9 146 1-155 3-154 (171)
39 PLN02825 amino-acid N-acetyltr 99.8 1.1E-17 2.3E-22 126.0 10.8 118 3-131 369-490 (515)
40 TIGR01890 N-Ac-Glu-synth amino 99.8 1.2E-17 2.6E-22 125.0 11.0 123 2-131 283-405 (429)
41 PF13302 Acetyltransf_3: Acety 99.8 9.7E-17 2.1E-21 103.0 13.7 124 2-127 2-142 (142)
42 PRK05279 N-acetylglutamate syn 99.7 1.2E-17 2.6E-22 125.5 10.4 119 2-131 295-417 (441)
43 PRK12308 bifunctional arginino 99.7 3.1E-17 6.7E-22 127.5 11.2 118 2-132 464-585 (614)
44 TIGR03448 mycothiol_MshD mycot 99.7 2E-16 4.2E-21 113.3 12.8 119 5-132 4-129 (292)
45 PHA01807 hypothetical protein 99.7 2.5E-16 5.5E-21 101.5 11.4 117 7-124 9-136 (153)
46 PF13508 Acetyltransf_7: Acety 99.7 7.5E-16 1.6E-20 89.1 12.1 77 41-128 3-79 (79)
47 KOG3138|consensus 99.7 1.5E-16 3.2E-21 104.2 9.1 151 1-153 16-174 (187)
48 PRK01346 hypothetical protein; 99.7 7.7E-16 1.7E-20 115.1 12.5 128 2-135 7-140 (411)
49 KOG3396|consensus 99.7 1.2E-15 2.6E-20 93.1 9.8 126 2-130 7-143 (150)
50 PF08445 FR47: FR47-like prote 99.6 7.7E-14 1.7E-18 81.6 12.0 61 70-131 22-82 (86)
51 KOG2488|consensus 99.6 3.1E-14 6.7E-19 92.1 11.0 107 27-133 78-184 (202)
52 COG3393 Predicted acetyltransf 99.6 9.8E-14 2.1E-18 94.6 12.9 88 42-134 178-265 (268)
53 PRK13688 hypothetical protein; 99.6 4.3E-14 9.4E-19 91.6 10.3 108 4-132 20-134 (156)
54 COG3981 Predicted acetyltransf 99.6 8.8E-14 1.9E-18 88.8 11.3 131 2-133 4-161 (174)
55 cd02169 Citrate_lyase_ligase C 99.5 1.3E-13 2.7E-18 98.0 10.6 77 44-131 8-84 (297)
56 COG1670 RimL Acetyltransferase 99.5 4.2E-13 9.1E-18 89.7 12.3 101 51-152 77-180 (187)
57 COG2153 ElaA Predicted acyltra 99.5 2.6E-13 5.6E-18 84.1 8.3 137 6-152 12-153 (155)
58 TIGR00124 cit_ly_ligase [citra 99.5 2.2E-12 4.9E-17 93.1 12.3 81 41-133 31-111 (332)
59 KOG3397|consensus 99.5 1.3E-12 2.7E-17 83.4 9.6 120 10-135 23-145 (225)
60 PF12746 GNAT_acetyltran: GNAT 99.3 1.2E-10 2.7E-15 81.2 14.3 91 41-139 165-255 (265)
61 PF13718 GNAT_acetyltr_2: GNAT 99.3 2.5E-10 5.4E-15 76.0 14.1 121 28-152 14-196 (196)
62 PF08444 Gly_acyl_tr_C: Aralky 99.2 1.2E-10 2.5E-15 67.1 6.5 74 48-129 5-78 (89)
63 KOG4144|consensus 99.2 5.4E-11 1.2E-15 74.6 5.0 131 1-134 11-164 (190)
64 TIGR01211 ELP3 histone acetylt 99.1 7.7E-10 1.7E-14 84.4 11.4 79 50-131 422-516 (522)
65 cd04301 NAT_SF N-Acyltransfera 99.1 1.7E-09 3.7E-14 59.0 8.6 62 45-108 3-64 (65)
66 PF12568 DUF3749: Acetyltransf 99.0 1.9E-08 4.1E-13 61.8 10.7 110 7-129 10-123 (128)
67 PF14542 Acetyltransf_CG: GCN5 99.0 1.4E-08 3.1E-13 58.0 9.6 70 45-124 3-72 (78)
68 COG1444 Predicted P-loop ATPas 99.0 3.3E-08 7.2E-13 77.6 13.5 122 29-153 458-612 (758)
69 COG3375 Uncharacterized conser 98.9 2.6E-07 5.5E-12 61.9 15.0 151 2-152 3-165 (266)
70 KOG4135|consensus 98.8 9E-08 1.9E-12 59.9 9.7 81 52-132 83-171 (185)
71 COG3818 Predicted acetyltransf 98.8 4.1E-08 8.8E-13 60.1 7.8 127 2-133 8-150 (167)
72 COG2388 Predicted acetyltransf 98.7 1.3E-07 2.9E-12 56.0 7.1 65 40-108 14-78 (99)
73 COG3053 CitC Citrate lyase syn 98.6 6E-07 1.3E-11 62.6 9.6 83 41-134 36-118 (352)
74 COG4552 Eis Predicted acetyltr 98.5 3.8E-07 8.3E-12 65.2 6.9 86 42-133 40-129 (389)
75 PF04958 AstA: Arginine N-succ 98.4 1.9E-06 4.2E-11 62.2 8.4 93 1-93 1-145 (342)
76 PRK10456 arginine succinyltran 98.4 3.6E-06 7.7E-11 60.7 9.0 92 1-92 1-142 (344)
77 COG5628 Predicted acetyltransf 98.3 3.6E-05 7.7E-10 46.7 9.6 75 50-128 45-120 (143)
78 COG0454 WecD Histone acetyltra 98.2 2.8E-06 6.1E-11 52.0 5.0 44 75-126 87-130 (156)
79 PF00765 Autoind_synth: Autoin 98.2 0.00012 2.7E-09 48.8 11.7 120 8-131 6-155 (182)
80 COG3882 FkbH Predicted enzyme 98.1 1.6E-05 3.6E-10 59.4 7.8 126 2-131 414-550 (574)
81 PRK13834 putative autoinducer 98.1 0.0001 2.2E-09 50.3 10.1 118 9-129 15-163 (207)
82 PF06852 DUF1248: Protein of u 98.0 0.00062 1.3E-08 45.2 13.2 121 6-131 9-137 (181)
83 PF13480 Acetyltransf_6: Acety 98.0 0.00052 1.1E-08 43.5 11.7 98 8-110 27-135 (142)
84 KOG3698|consensus 98.0 8.2E-05 1.8E-09 56.9 8.8 141 2-150 680-890 (891)
85 COG3916 LasI N-acyl-L-homoseri 97.9 0.00085 1.8E-08 45.1 11.3 142 8-154 13-184 (209)
86 TIGR03244 arg_catab_AstA argin 97.8 0.00014 3.1E-09 52.5 7.9 90 3-92 1-140 (336)
87 TIGR03245 arg_AOST_alph argini 97.8 0.0002 4.4E-09 51.7 8.3 90 3-92 1-141 (336)
88 TIGR03694 exosort_acyl putativ 97.8 0.00031 6.8E-09 49.1 8.9 124 3-129 9-196 (241)
89 TIGR03243 arg_catab_AOST argin 97.7 0.00026 5.7E-09 51.1 8.1 90 3-92 1-140 (335)
90 COG3138 AstA Arginine/ornithin 97.7 0.00018 3.8E-09 50.4 6.2 91 1-91 1-141 (336)
91 TIGR03827 GNAT_ablB putative b 97.6 0.00032 6.9E-09 49.9 7.1 64 85-154 21-84 (266)
92 PF01233 NMT: Myristoyl-CoA:pr 97.6 0.0038 8.3E-08 40.3 10.9 96 9-105 34-146 (162)
93 PF09390 DUF1999: Protein of u 97.6 0.0059 1.3E-07 38.4 11.2 124 2-130 1-140 (161)
94 PF13880 Acetyltransf_13: ESCO 97.5 0.00018 3.9E-09 39.8 3.9 30 69-98 5-34 (70)
95 COG1243 ELP3 Histone acetyltra 97.4 0.00025 5.3E-09 53.1 4.3 51 78-131 459-509 (515)
96 PHA00432 internal virion prote 97.3 0.0073 1.6E-07 38.0 9.6 115 2-131 1-121 (137)
97 KOG2036|consensus 97.3 0.0018 3.8E-08 51.2 8.2 85 70-155 615-748 (1011)
98 TIGR03019 pepcterm_femAB FemAB 97.3 0.0095 2.1E-07 43.8 11.6 123 10-136 158-286 (330)
99 PF04377 ATE_C: Arginine-tRNA- 97.3 0.01 2.2E-07 37.2 9.9 95 29-129 25-120 (128)
100 PRK01305 arginyl-tRNA-protein 97.1 0.019 4E-07 40.1 10.9 84 27-114 128-212 (240)
101 PF05301 Mec-17: Touch recepto 97.1 0.0063 1.4E-07 37.3 7.5 51 71-124 48-98 (120)
102 PF11039 DUF2824: Protein of u 97.1 0.03 6.5E-07 34.8 10.2 129 1-139 1-130 (151)
103 cd04264 DUF619-NAGS DUF619 dom 96.9 0.0092 2E-07 35.7 6.9 60 50-115 16-75 (99)
104 KOG2535|consensus 96.8 0.002 4.3E-08 46.7 4.3 49 80-131 498-547 (554)
105 PHA01733 hypothetical protein 96.7 0.0041 8.8E-08 39.8 4.7 124 3-132 4-133 (153)
106 PF01853 MOZ_SAS: MOZ/SAS fami 96.6 0.021 4.5E-07 38.1 7.6 48 52-102 66-113 (188)
107 cd04265 DUF619-NAGS-U DUF619 d 96.4 0.026 5.6E-07 33.7 6.5 58 51-115 18-75 (99)
108 PF02799 NMT_C: Myristoyl-CoA: 96.3 0.17 3.6E-06 34.0 10.5 126 4-137 31-171 (190)
109 PRK14852 hypothetical protein; 96.2 0.034 7.5E-07 46.2 8.2 143 4-152 31-200 (989)
110 PF02474 NodA: Nodulation prot 96.2 0.011 2.4E-07 38.6 4.3 148 7-159 15-184 (196)
111 PF04768 DUF619: Protein of un 96.2 0.19 4.1E-06 33.3 10.3 107 6-122 27-135 (170)
112 KOG4601|consensus 96.1 0.082 1.8E-06 36.3 8.2 52 69-123 108-159 (264)
113 KOG2779|consensus 95.7 0.13 2.8E-06 37.7 8.3 53 50-102 144-200 (421)
114 PF11124 Pho86: Inorganic phos 95.7 0.52 1.1E-05 34.0 11.0 90 40-131 169-271 (304)
115 PLN03238 probable histone acet 95.6 0.066 1.4E-06 38.1 6.4 50 50-102 139-188 (290)
116 PRK00756 acyltransferase NodA; 95.5 0.11 2.5E-06 33.7 6.8 71 40-112 53-127 (196)
117 COG2935 Putative arginyl-tRNA: 95.5 0.16 3.5E-06 35.3 7.9 61 50-114 159-219 (253)
118 COG5630 ARG2 Acetylglutamate s 95.5 0.068 1.5E-06 39.5 6.4 85 11-99 346-431 (495)
119 PTZ00064 histone acetyltransfe 95.1 0.061 1.3E-06 41.2 5.2 50 50-102 368-417 (552)
120 PLN03239 histone acetyltransfe 94.9 0.099 2.2E-06 38.3 5.8 50 50-102 197-246 (351)
121 COG2401 ABC-type ATPase fused 94.9 0.013 2.8E-07 44.1 1.3 63 69-131 241-308 (593)
122 KOG2779|consensus 94.7 0.37 8E-06 35.4 8.0 125 4-136 263-402 (421)
123 PLN00104 MYST -like histone ac 94.4 0.064 1.4E-06 40.7 3.9 48 50-100 290-337 (450)
124 PF02388 FemAB: FemAB family; 94.2 0.26 5.6E-06 37.5 6.8 111 38-153 32-160 (406)
125 PF13444 Acetyltransf_5: Acety 94.2 0.19 4.2E-06 30.1 5.1 49 42-91 32-100 (101)
126 PF09924 DUF2156: Uncharacteri 94.1 0.73 1.6E-05 33.4 8.8 105 3-110 134-246 (299)
127 PF11090 DUF2833: Protein of u 92.6 1.2 2.6E-05 25.8 6.7 28 103-130 56-83 (86)
128 KOG2747|consensus 92.5 0.32 7E-06 36.4 4.9 29 72-100 263-291 (396)
129 cd04266 DUF619-NAGS-FABP DUF61 91.8 1.9 4.1E-05 26.3 6.9 61 50-115 17-82 (108)
130 KOG2696|consensus 91.2 0.89 1.9E-05 33.7 5.8 48 53-100 200-248 (403)
131 PF12261 T_hemolysin: Thermost 90.6 1.6 3.4E-05 29.2 6.2 78 47-131 40-142 (179)
132 PF04339 DUF482: Protein of un 90.4 3 6.5E-05 31.4 8.1 115 7-133 210-331 (370)
133 PRK02983 lysS lysyl-tRNA synth 89.1 4.6 0.0001 35.0 9.1 67 42-112 421-487 (1094)
134 PRK04531 acetylglutamate kinas 88.6 2.3 5.1E-05 32.3 6.5 89 11-115 263-351 (398)
135 COG5092 NMT1 N-myristoyl trans 87.6 4.1 8.8E-05 29.8 6.8 52 51-102 143-198 (451)
136 KOG3014|consensus 87.2 6.7 0.00015 27.6 7.5 32 68-99 182-213 (257)
137 COG5027 SAS2 Histone acetyltra 87.1 0.42 9.2E-06 35.0 1.8 39 52-93 248-286 (395)
138 PF04339 DUF482: Protein of un 85.4 14 0.0003 28.0 10.3 120 5-131 3-160 (370)
139 PF07395 Mig-14: Mig-14; Inte 84.9 5.1 0.00011 28.6 6.1 60 45-105 177-240 (264)
140 COG2898 Uncharacterized conser 83.3 12 0.00027 29.7 8.1 63 45-110 396-458 (538)
141 PF12953 DUF3842: Domain of un 80.6 4.1 8.9E-05 25.6 3.9 46 80-129 6-51 (131)
142 cd03173 DUF619-like DUF619 dom 80.2 10 0.00022 22.7 6.6 57 51-115 18-74 (98)
143 PHA02769 hypothetical protein; 79.7 5.3 0.00011 24.5 4.0 44 87-132 94-140 (154)
144 PF04816 DUF633: Family of unk 76.9 6.8 0.00015 26.9 4.5 49 85-133 74-124 (205)
145 COG5092 NMT1 N-myristoyl trans 76.0 19 0.00042 26.5 6.6 127 4-135 261-418 (451)
146 PRK15312 antimicrobial resista 74.5 17 0.00038 26.4 6.1 76 28-104 188-269 (298)
147 COG2348 Peptidoglycan interpep 72.8 42 0.00091 26.0 8.4 104 44-153 43-164 (418)
148 cd07235 MRD Mitomycin C resist 72.1 6.3 0.00014 23.9 3.2 24 105-129 3-26 (122)
149 cd08353 Glo_EDI_BRP_like_7 Thi 71.0 5.1 0.00011 25.1 2.7 28 103-131 4-31 (142)
150 COG5653 Protein involved in ce 70.6 26 0.00056 26.8 6.4 88 21-112 248-338 (406)
151 cd08358 Glo_EDI_BRP_like_21 Th 68.9 17 0.00037 22.8 4.7 19 114-132 13-32 (127)
152 TIGR02990 ectoine_eutA ectoine 63.5 19 0.00041 25.4 4.5 45 88-132 105-152 (239)
153 cd09012 Glo_EDI_BRP_like_24 Th 63.5 14 0.0003 22.5 3.5 17 114-130 11-27 (124)
154 COG3473 Maleate cis-trans isom 63.1 23 0.00051 24.5 4.6 38 94-131 109-149 (238)
155 PF13380 CoA_binding_2: CoA bi 62.8 23 0.0005 21.8 4.3 72 50-131 37-108 (116)
156 PF00571 CBS: CBS domain CBS d 62.1 20 0.00043 18.2 3.6 34 26-59 15-48 (57)
157 cd08344 MhqB_like_N N-terminal 62.0 13 0.00028 22.2 3.1 28 103-131 3-30 (112)
158 cd07267 THT_Oxygenase_N N-term 61.1 13 0.00028 22.2 3.0 27 104-131 5-31 (113)
159 cd08356 Glo_EDI_BRP_like_17 Th 59.5 10 0.00022 22.9 2.3 18 115-132 13-30 (113)
160 PF02388 FemAB: FemAB family; 58.8 82 0.0018 24.3 9.1 75 50-128 301-380 (406)
161 PRK10150 beta-D-glucuronidase; 57.9 1E+02 0.0022 25.1 9.3 81 53-133 272-357 (604)
162 cd08342 HPPD_N_like N-terminal 56.3 24 0.00051 22.0 3.7 27 105-132 3-30 (136)
163 cd08346 PcpA_N_like N-terminal 56.2 24 0.00053 21.1 3.7 29 103-132 2-31 (126)
164 COG2384 Predicted SAM-dependen 55.3 36 0.00077 23.8 4.5 48 85-132 93-142 (226)
165 cd08350 BLMT_like BLMT, a bleo 54.8 14 0.00031 22.3 2.5 20 114-133 13-32 (120)
166 KOG4387|consensus 53.4 67 0.0015 21.6 6.4 80 75-156 105-188 (191)
167 TIGR03645 glyox_marine lactoyl 52.0 22 0.00048 23.1 3.1 28 102-130 4-32 (162)
168 PF00903 Glyoxalase: Glyoxalas 51.7 33 0.00072 20.4 3.8 30 103-133 2-32 (128)
169 PF02836 Glyco_hydro_2_C: Glyc 51.3 84 0.0018 22.8 6.3 66 69-134 14-81 (298)
170 PF00925 GTP_cyclohydro2: GTP 50.7 48 0.001 22.0 4.5 47 78-133 122-168 (169)
171 PF06559 DCD: 2'-deoxycytidine 49.8 9.7 0.00021 28.3 1.2 38 44-86 319-356 (364)
172 cd07253 Glo_EDI_BRP_like_2 Thi 48.8 30 0.00065 20.6 3.3 30 102-132 3-33 (125)
173 cd08362 BphC5-RrK37_N_like N-t 48.3 30 0.00064 20.7 3.2 29 102-131 3-32 (120)
174 cd07265 2_3_CTD_N N-terminal d 47.6 34 0.00073 20.6 3.4 29 103-132 5-34 (122)
175 COG2266 GTP:adenosylcobinamide 47.3 52 0.0011 22.1 4.2 44 87-131 26-69 (177)
176 PF08901 DUF1847: Protein of u 46.3 44 0.00095 21.9 3.6 51 82-132 33-88 (157)
177 KOG1472|consensus 45.9 5.6 0.00012 32.6 -0.4 76 53-133 431-507 (720)
178 PRK14968 putative methyltransf 45.6 85 0.0018 20.6 5.7 45 90-134 130-174 (188)
179 PHA00771 head assembly protein 45.0 79 0.0017 20.0 8.9 68 77-148 69-137 (151)
180 cd07243 2_3_CTD_C C-terminal d 44.8 48 0.001 21.0 3.8 29 103-132 7-36 (143)
181 PRK10975 TDP-fucosamine acetyl 44.6 93 0.002 20.8 5.5 31 102-132 3-33 (194)
182 cd08352 Glo_EDI_BRP_like_1 Thi 44.4 48 0.001 19.7 3.7 29 102-131 3-32 (125)
183 PF04015 DUF362: Domain of unk 43.7 61 0.0013 22.0 4.4 46 86-131 20-67 (206)
184 cd07244 FosA FosA, a Fosfomyci 43.7 56 0.0012 19.7 3.9 28 103-131 2-30 (121)
185 cd07242 Glo_EDI_BRP_like_6 Thi 43.3 53 0.0011 19.8 3.8 29 103-132 2-34 (128)
186 COG3607 Predicted lactoylgluta 43.3 18 0.00039 22.7 1.5 16 115-130 15-30 (133)
187 cd08347 PcpA_C_like C-terminal 43.2 45 0.00098 21.6 3.6 30 102-132 1-31 (157)
188 PF12162 STAT1_TAZ2bind: STAT1 42.9 10 0.00022 16.0 0.3 15 4-18 7-21 (23)
189 PF14696 Glyoxalase_5: Hydroxy 42.6 15 0.00032 23.6 1.2 32 101-133 8-39 (139)
190 cd07252 BphC1-RGP6_N_like N-te 42.3 40 0.00087 20.3 3.1 28 103-131 3-31 (120)
191 cd07237 BphC1-RGP6_C_like C-te 42.1 56 0.0012 20.9 3.9 30 101-131 8-38 (154)
192 cd07240 ED_TypeI_classII_N N-t 41.9 48 0.001 19.5 3.4 28 104-132 4-32 (117)
193 PF12652 CotJB: CotJB protein; 40.7 13 0.00028 21.2 0.6 36 89-124 3-38 (78)
194 cd07241 Glo_EDI_BRP_like_3 Thi 40.0 50 0.0011 19.7 3.3 27 104-131 3-30 (125)
195 PF13530 SCP2_2: Sterol carrie 40.0 1.2E+02 0.0027 20.8 6.6 74 29-109 10-87 (218)
196 PF03376 Adeno_E3B: Adenovirus 39.9 13 0.00028 20.2 0.5 13 78-90 53-65 (67)
197 TIGR00068 glyox_I lactoylgluta 39.2 48 0.001 21.0 3.2 30 101-131 16-46 (150)
198 PF13704 Glyco_tranf_2_4: Glyc 38.3 80 0.0017 18.2 4.6 36 89-124 5-40 (97)
199 COG0807 RibA GTP cyclohydrolas 37.9 1.2E+02 0.0025 20.8 4.8 52 74-134 119-170 (193)
200 PF11633 SUD-M: Single-strande 37.7 1.1E+02 0.0024 19.6 4.6 59 85-150 19-77 (142)
201 PF12681 Glyoxalase_2: Glyoxal 37.2 46 0.001 19.3 2.7 18 115-132 7-25 (108)
202 PLN02300 lactoylglutathione ly 37.1 44 0.00096 24.1 3.1 39 92-131 12-53 (286)
203 cd08348 BphC2-C3-RGP6_C_like T 36.6 80 0.0017 19.3 3.9 28 104-132 3-31 (134)
204 cd07256 HPCD_C_class_II C-term 36.6 60 0.0013 21.0 3.4 28 103-131 4-32 (161)
205 PRK11478 putative lyase; Provi 36.2 46 0.001 20.2 2.7 27 103-130 7-34 (129)
206 cd07255 Glo_EDI_BRP_like_12 Th 35.6 67 0.0015 19.2 3.4 29 103-132 3-32 (125)
207 COG0346 GloA Lactoylglutathion 35.1 67 0.0014 18.9 3.3 30 103-133 3-33 (138)
208 PF01751 Toprim: Toprim domain 34.9 44 0.00096 19.7 2.4 34 74-108 64-97 (100)
209 COG1212 KdsB CMP-2-keto-3-deox 34.3 1.5E+02 0.0034 21.0 5.0 47 87-135 27-73 (247)
210 PF08348 PAS_6: YheO-like PAS 34.3 90 0.002 19.3 3.7 20 43-62 86-105 (118)
211 cd08357 Glo_EDI_BRP_like_18 Th 34.1 74 0.0016 19.0 3.4 17 115-131 11-28 (125)
212 PRK14837 undecaprenyl pyrophos 34.1 78 0.0017 22.3 3.7 34 79-112 27-60 (230)
213 cd07264 Glo_EDI_BRP_like_15 Th 34.0 87 0.0019 18.7 3.7 24 106-130 4-28 (125)
214 TIGR00055 uppS undecaprenyl di 34.0 80 0.0017 22.2 3.7 34 79-112 20-53 (226)
215 PRK00301 aat leucyl/phenylalan 33.9 1.7E+02 0.0037 20.7 8.3 105 10-131 90-203 (233)
216 COG3146 Uncharacterized protei 33.6 2.1E+02 0.0046 21.7 5.8 86 42-129 59-173 (387)
217 cd08364 FosX FosX, a fosfomyci 33.4 85 0.0018 19.3 3.6 29 102-131 4-33 (131)
218 PF01255 Prenyltransf: Putativ 32.8 85 0.0019 21.9 3.8 34 79-112 15-48 (223)
219 cd07263 Glo_EDI_BRP_like_16 Th 32.0 65 0.0014 18.8 2.9 18 115-132 10-28 (119)
220 KOG3008|consensus 31.8 1.1E+02 0.0024 21.6 4.0 67 80-152 110-176 (300)
221 PF10566 Glyco_hydro_97: Glyco 31.6 2.1E+02 0.0045 20.9 5.8 49 87-138 71-130 (273)
222 PTZ00129 40S ribosomal protein 31.4 1.5E+02 0.0033 19.3 6.8 49 83-131 69-129 (149)
223 cd07266 HPCD_N_class_II N-term 31.1 69 0.0015 19.1 2.9 28 103-131 5-33 (121)
224 cd07238 Glo_EDI_BRP_like_5 Thi 31.0 51 0.0011 19.4 2.2 16 115-130 12-28 (112)
225 PRK07758 hypothetical protein; 31.0 59 0.0013 19.4 2.3 22 83-104 72-93 (95)
226 COG1658 Small primase-like pro 30.9 37 0.00081 21.4 1.6 22 75-96 60-81 (127)
227 cd07249 MMCE Methylmalonyl-CoA 30.7 51 0.0011 19.8 2.2 27 104-131 2-29 (128)
228 cd08361 PpCmtC_N N-terminal do 30.4 64 0.0014 19.6 2.6 27 104-131 8-35 (124)
229 PRK03681 hypA hydrogenase nick 30.2 77 0.0017 19.5 2.9 40 84-123 4-49 (114)
230 cd04263 DUF619-NAGK-FABP DUF61 30.1 1.3E+02 0.0028 18.1 6.8 42 69-115 33-74 (98)
231 PRK09318 bifunctional 3,4-dihy 29.8 1.6E+02 0.0035 22.7 5.0 48 77-133 309-356 (387)
232 PRK10291 glyoxalase I; Provisi 29.8 74 0.0016 19.4 2.9 17 115-131 8-25 (129)
233 COG3250 LacZ Beta-galactosidas 29.8 3.7E+02 0.008 23.2 8.6 79 54-132 281-364 (808)
234 cd08349 BLMA_like Bleomycin bi 29.8 69 0.0015 18.6 2.7 18 115-132 10-28 (112)
235 COG0375 HybF Zn finger protein 29.4 1.5E+02 0.0032 18.5 5.0 37 85-121 5-47 (115)
236 PRK10340 ebgA cryptic beta-D-g 29.4 4.1E+02 0.0089 23.6 9.1 80 53-132 314-398 (1021)
237 COG2231 Uncharacterized protei 29.4 62 0.0013 22.4 2.5 40 84-130 121-160 (215)
238 cd07262 Glo_EDI_BRP_like_19 Th 29.2 96 0.0021 18.5 3.3 27 105-132 3-33 (123)
239 PRK14689 hypothetical protein; 29.1 1.5E+02 0.0033 18.6 4.3 18 115-132 16-33 (124)
240 PRK10240 undecaprenyl pyrophos 29.1 95 0.0021 21.9 3.5 34 79-112 14-47 (229)
241 PRK14831 undecaprenyl pyrophos 28.9 84 0.0018 22.5 3.2 34 79-112 41-74 (249)
242 PRK09319 bifunctional 3,4-dihy 28.8 83 0.0018 25.4 3.4 34 99-134 347-380 (555)
243 COG2994 HlyC ACP:hemolysin acy 28.8 1.1E+02 0.0024 19.8 3.3 39 26-64 35-75 (148)
244 cd09013 BphC-JF8_N_like N-term 28.7 1.1E+02 0.0024 18.3 3.5 28 103-131 7-35 (121)
245 PF02679 ComA: (2R)-phospho-3- 28.4 1.2E+02 0.0025 21.7 3.8 44 90-133 85-134 (244)
246 PRK14842 undecaprenyl pyrophos 28.4 1.1E+02 0.0024 21.8 3.7 34 79-112 29-62 (241)
247 COG3414 SgaB Phosphotransferas 28.3 1.3E+02 0.0029 17.7 3.8 22 83-104 9-32 (93)
248 smart00116 CBS Domain in cysta 28.3 71 0.0015 14.5 3.5 29 31-59 13-41 (49)
249 PRK14829 undecaprenyl pyrophos 28.2 96 0.0021 22.1 3.4 33 79-111 35-67 (243)
250 PRK06724 hypothetical protein; 28.2 1.3E+02 0.0029 18.6 3.8 28 102-130 7-38 (128)
251 PRK14832 undecaprenyl pyrophos 27.9 1E+02 0.0023 22.1 3.5 34 79-112 39-72 (253)
252 PRK14841 undecaprenyl pyrophos 27.7 1.1E+02 0.0024 21.7 3.6 34 79-112 24-57 (233)
253 cd00475 CIS_IPPS Cis (Z)-Isopr 27.6 1.1E+02 0.0025 21.4 3.6 34 79-112 21-54 (221)
254 PF04131 NanE: Putative N-acet 27.2 14 0.00031 25.0 -0.7 91 74-172 67-159 (192)
255 cd08360 MhqB_like_C C-terminal 27.1 1.2E+02 0.0026 18.7 3.5 28 103-131 4-32 (134)
256 cd01027 TOPRIM_RNase_M5_like T 27.0 49 0.0011 18.9 1.5 23 74-96 49-71 (81)
257 cd08343 ED_TypeI_classII_C C-t 27.0 1.1E+02 0.0023 18.7 3.3 17 115-131 11-28 (131)
258 COG0826 Collagenase and relate 26.9 2.2E+02 0.0047 21.6 5.2 21 109-129 121-141 (347)
259 PF02334 RTP: Replication term 26.8 19 0.00042 22.0 -0.2 23 81-103 28-50 (122)
260 PRK14840 undecaprenyl pyrophos 26.6 1.1E+02 0.0025 21.8 3.5 34 79-112 43-76 (250)
261 PRK14834 undecaprenyl pyrophos 26.4 1.4E+02 0.003 21.4 3.9 34 79-112 35-68 (249)
262 COG3543 Uncharacterized conser 26.4 1.2E+02 0.0026 19.3 3.2 31 78-108 13-44 (135)
263 PF02219 MTHFR: Methylenetetra 26.1 2.4E+02 0.0053 20.4 5.3 42 84-125 246-287 (287)
264 PF12804 NTP_transf_3: MobA-li 25.8 97 0.0021 19.7 3.0 43 87-131 23-65 (160)
265 PTZ00349 dehydrodolichyl dipho 25.6 1.2E+02 0.0026 22.6 3.6 34 79-112 40-73 (322)
266 KOG0538|consensus 25.5 1.8E+02 0.004 21.7 4.4 49 74-129 126-174 (363)
267 PF01740 STAS: STAS domain; I 25.3 1.6E+02 0.0035 17.6 4.7 39 87-128 65-103 (117)
268 PRK09607 rps11p 30S ribosomal 25.1 1.9E+02 0.0042 18.4 7.4 50 82-131 49-110 (132)
269 PLN02979 glycolate oxidase 24.9 1E+02 0.0022 23.5 3.2 40 89-128 134-173 (366)
270 PRK14019 bifunctional 3,4-dihy 24.9 2.3E+02 0.005 21.7 5.0 33 97-132 330-362 (367)
271 TIGR00100 hypA hydrogenase nic 24.9 1.1E+02 0.0023 18.9 2.8 39 84-122 4-48 (115)
272 PRK14835 undecaprenyl pyrophos 24.8 1.4E+02 0.003 21.8 3.7 34 79-112 62-95 (275)
273 PRK10310 PTS system galactitol 24.6 1.1E+02 0.0024 17.9 2.8 22 83-104 10-33 (94)
274 TIGR00505 ribA GTP cyclohydrol 24.6 2.3E+02 0.005 19.2 5.3 46 78-132 121-166 (191)
275 cd09014 BphC-JF8_C_like C-term 24.6 1.4E+02 0.0031 19.4 3.6 29 102-131 6-35 (166)
276 PRK14839 undecaprenyl pyrophos 24.4 1.3E+02 0.0028 21.4 3.5 34 79-112 30-63 (239)
277 TIGR03628 arch_S11P archaeal r 24.3 1.9E+02 0.004 18.0 7.4 50 82-131 42-103 (114)
278 PRK04101 fosfomycin resistance 24.2 1.6E+02 0.0034 18.3 3.7 29 102-131 4-33 (139)
279 cd09011 Glo_EDI_BRP_like_23 Th 24.2 1.2E+02 0.0026 18.0 3.1 25 105-130 5-30 (120)
280 TIGR03032 conserved hypothetic 24.1 3.2E+02 0.0069 20.6 5.5 38 40-83 281-318 (335)
281 PF04555 XhoI: Restriction end 24.1 2.4E+02 0.0053 19.3 4.7 37 74-110 144-180 (196)
282 PRK00762 hypA hydrogenase nick 24.0 1.2E+02 0.0025 19.0 2.9 40 84-123 4-49 (124)
283 cd04736 MDH_FMN Mandelate dehy 23.8 1.1E+02 0.0024 23.3 3.2 40 89-128 128-167 (361)
284 COG0473 LeuB Isocitrate/isopro 23.7 1.5E+02 0.0032 22.4 3.7 43 82-125 10-52 (348)
285 PRK14827 undecaprenyl pyrophos 23.6 1.2E+02 0.0025 22.4 3.2 33 79-111 88-120 (296)
286 PRK14833 undecaprenyl pyrophos 23.5 1.3E+02 0.0029 21.3 3.4 34 79-112 25-58 (233)
287 COG3010 NanE Putative N-acetyl 23.3 1.3E+02 0.0027 21.0 3.1 90 74-170 101-193 (229)
288 KOG1754|consensus 22.9 2.1E+02 0.0045 18.1 4.8 71 97-175 16-89 (130)
289 PRK12380 hydrogenase nickel in 22.8 1.3E+02 0.0027 18.5 2.9 40 84-123 4-49 (113)
290 PRK00393 ribA GTP cyclohydrola 22.7 2.6E+02 0.0056 19.1 5.3 47 77-132 123-169 (197)
291 cd04883 ACT_AcuB C-terminal AC 22.7 1.4E+02 0.003 15.9 4.0 27 103-129 42-69 (72)
292 PF13289 SIR2_2: SIR2-like dom 22.6 2E+02 0.0043 17.7 4.6 10 104-113 88-97 (143)
293 PF01136 Peptidase_U32: Peptid 22.6 2.3E+02 0.005 19.6 4.5 23 110-132 45-67 (233)
294 cd07233 Glyoxalase_I Glyoxalas 22.4 1.8E+02 0.0039 17.1 4.4 26 105-131 3-29 (121)
295 PRK12485 bifunctional 3,4-dihy 22.1 2.7E+02 0.0058 21.4 4.9 33 97-132 333-365 (369)
296 KOG4039|consensus 22.0 1.5E+02 0.0033 20.3 3.2 66 50-127 82-148 (238)
297 PRK09525 lacZ beta-D-galactosi 22.0 5.8E+02 0.013 22.8 9.5 79 54-132 331-414 (1027)
298 cd08359 Glo_EDI_BRP_like_22 Th 21.9 1.8E+02 0.0039 17.1 3.5 17 115-131 13-30 (119)
299 PRK14838 undecaprenyl pyrophos 21.7 1.6E+02 0.0035 21.0 3.5 34 79-112 31-64 (242)
300 COG4904 Uncharacterized protei 21.6 67 0.0015 20.9 1.5 15 115-129 70-84 (174)
301 cd07246 Glo_EDI_BRP_like_8 Thi 21.5 1.9E+02 0.0041 17.0 4.1 20 113-132 11-31 (122)
302 PRK14828 undecaprenyl pyrophos 21.4 1.9E+02 0.0041 20.8 3.8 34 79-112 47-81 (256)
303 PRK11197 lldD L-lactate dehydr 21.4 1.2E+02 0.0027 23.2 3.1 40 89-128 135-174 (381)
304 cd06587 Glo_EDI_BRP_like This 21.2 1.3E+02 0.0027 16.9 2.7 21 113-133 8-29 (112)
305 cd04582 CBS_pair_ABC_OpuCA_ass 21.2 1.8E+02 0.0038 16.6 4.7 32 29-60 12-43 (106)
306 cd04607 CBS_pair_NTP_transfera 21.2 1.8E+02 0.004 16.8 4.6 32 28-59 12-43 (113)
307 PF04260 DUF436: Protein of un 21.1 2.6E+02 0.0057 18.7 4.1 54 86-139 44-100 (172)
308 PF02100 ODC_AZ: Ornithine dec 21.1 2.1E+02 0.0045 17.4 4.8 54 77-131 30-87 (108)
309 cd07043 STAS_anti-anti-sigma_f 21.1 1.7E+02 0.0038 16.5 5.3 40 87-129 55-94 (99)
310 PLN02831 Bifunctional GTP cycl 21.0 3E+02 0.0065 21.8 5.1 46 79-133 364-409 (450)
311 cd08355 Glo_EDI_BRP_like_14 Th 20.9 1.3E+02 0.0028 17.9 2.8 20 113-132 9-29 (122)
312 PRK08815 GTP cyclohydrolase; P 20.9 3.1E+02 0.0067 21.1 5.0 48 77-133 294-341 (375)
313 cd04182 GT_2_like_f GT_2_like_ 20.5 1.4E+02 0.003 19.4 3.0 40 87-126 25-64 (186)
314 cd02540 GT2_GlmU_N_bac N-termi 20.5 2.2E+02 0.0048 19.3 4.1 41 87-127 25-65 (229)
315 PF01155 HypA: Hydrogenase exp 20.4 1.2E+02 0.0026 18.6 2.4 23 85-107 5-27 (113)
316 TIGR00377 ant_ant_sig anti-ant 20.4 2E+02 0.0042 16.8 4.8 39 88-129 61-99 (108)
317 cd04619 CBS_pair_6 The CBS dom 20.4 2E+02 0.0043 16.8 4.7 32 29-60 12-43 (114)
318 cd04610 CBS_pair_ParBc_assoc T 20.3 1.9E+02 0.004 16.5 4.6 30 30-59 72-101 (107)
319 PF01697 Glyco_transf_92: Glyc 20.3 3.3E+02 0.0071 19.3 7.4 59 74-133 4-65 (285)
320 TIGR03211 catechol_2_3 catecho 20.2 1.6E+02 0.0035 21.3 3.5 28 103-131 5-33 (303)
321 PF00633 HHH: Helix-hairpin-he 20.1 1E+02 0.0022 13.8 1.5 13 84-96 17-29 (30)
No 1
>KOG3234|consensus
Probab=99.95 E-value=5e-27 Score=145.90 Aligned_cols=172 Identities=72% Similarity=1.169 Sum_probs=160.9
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcc
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPD 80 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~ 80 (175)
|.++||++.+|+-.+-.+..+...+.++..++...+..+++.+.++...++++.|++..........|++++..+.|.|+
T Consensus 1 Mtt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~ 80 (173)
T KOG3234|consen 1 MTTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPD 80 (173)
T ss_pred CCccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechh
Confidence 67899999999999999999999999999999999999999999999888999999999888888889999999999999
Q ss_pred hhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccccCCCCcc
Q psy13682 81 YRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVHGKSV 160 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~~~~ 160 (175)
||+.|+|+.|+..+++.....+.-.+-+.|..+|+-|+.||+++||..-.+..+||..|...|.+-|+|.|+++.++++.
T Consensus 81 ~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD~dkksi 160 (173)
T KOG3234|consen 81 YRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRDVDKKSI 160 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccCccccee
Confidence 99999999999999999998878888889999999999999999999999999999855558999999999999999999
Q ss_pred cccCCCCCCCCC
Q psy13682 161 IPLKQAVRPEDV 172 (175)
Q Consensus 161 ~~~~~~~~~~~~ 172 (175)
+|.+.+++++++
T Consensus 161 ~~~~~~~~~~~~ 172 (173)
T KOG3234|consen 161 IPLGAPVKCSPL 172 (173)
T ss_pred ecCCCccccccC
Confidence 999999998875
No 2
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.93 E-value=8.7e-24 Score=136.64 Aligned_cols=145 Identities=23% Similarity=0.295 Sum_probs=114.9
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcc
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPD 80 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~ 80 (175)
|++||+++.+|++.+.++.......+|....+...... ....+.+.. ++++||++.+..... ...+..++|+|+
T Consensus 1 ~~~iR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~vG~~~~~~~~~----~~~~~~i~v~~~ 74 (146)
T PRK09491 1 MNTISSLTPADLPAAYHIEQRAHAFPWSEKTFASNQGE-RYLNLKLTV-NGQMAAFAITQVVLD----EATLFNIAVDPD 74 (146)
T ss_pred CcchhcCChhhhHHHHHHHHhcCCCCCCHHHHHHHHhc-CceEEEEEE-CCeEEEEEEEEeecC----ceEEEEEEECHH
Confidence 78999999999999999876655555665544333221 222233344 799999998876543 255778999999
Q ss_pred hhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCcceeEEEecc
Q psy13682 81 YRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDEDAYDMRKAL 151 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~~~~~m~~~l 151 (175)
+||+|+|+.+++.+++.+++.++..+.+.+...|.+|.+||+|+||+..+..+.++. .+++.|.++|.+.|
T Consensus 75 ~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 75 YQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred HccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 999999999999999999999999999999999999999999999999998888764 23368899998764
No 3
>KOG3139|consensus
Probab=99.91 E-value=7.4e-23 Score=128.39 Aligned_cols=139 Identities=24% Similarity=0.402 Sum_probs=117.6
Q ss_pred cHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHH
Q psy13682 11 DMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAEL 90 (175)
Q Consensus 11 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l 90 (175)
.++.+.++.....+++++.....-...++++.++++.+.++..||.+............++|..++|+++|||+|||++|
T Consensus 26 ~l~~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aL 105 (165)
T KOG3139|consen 26 YLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKAL 105 (165)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHH
Confidence 34456677777777887777776677788999999987445479988876655443456899999999999999999999
Q ss_pred HHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecc
Q psy13682 91 MSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKAL 151 (175)
Q Consensus 91 l~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l 151 (175)
++.+++.++++|+..+.+.+..+|.+|.++|+++||+..++...||.++ .+.+.|...+
T Consensus 106 vr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng--~dA~rl~L~~ 164 (165)
T KOG3139|consen 106 VRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNG--MDALRLKLFF 164 (165)
T ss_pred HHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECC--cceEEEEeec
Confidence 9999999999999999999999999999999999999999999999988 6888877654
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.91 E-value=2.6e-22 Score=131.75 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=111.5
Q ss_pred eEEeeCCcccHHHHHhcccCcc-------ccccChHHHHHHHhcCC-cEEEEEEcCCCcEEEEEEeEeeCCCC-eeEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPL-------TETYGLSFYMQYLAHWP-EYFQVAESPTGEIMGYIMGKAEGHGD-KWHGHV 72 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~-------~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ivG~~~~~~~~~~~-~~~~~i 72 (175)
+.||+++++|++.+.++..+.- ......+.+...+...+ ...+++.. +|++||++++.....+. ...+.+
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~vG~~~~~~~~~~~~~~~~~~ 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACI-DGDVVGHLTIDVQQRPRRSHVADF 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEE-CCEEEEEEEEecccccccceEEEE
Confidence 7899999999999999876531 11223444555554433 34566655 79999999987653321 223333
Q ss_pred EEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCcceeEEEe
Q psy13682 73 TALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDEDAYDMRK 149 (175)
Q Consensus 73 ~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~~~~~m~~ 149 (175)
+++|+|+|||+|+|+.|++.+++++++ .+...+.+.+...|.+|++||+|+||+..+..+.++. ++.+.+.++|.+
T Consensus 83 -~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~ 160 (162)
T PRK10140 83 -GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR 160 (162)
T ss_pred -EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEEe
Confidence 699999999999999999999999998 6999999999999999999999999999999877654 444567777765
No 5
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.91 E-value=2.8e-23 Score=133.89 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=101.8
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccCh----HHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC--CeeEEEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGL----SFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG--DKWHGHVTA 74 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~--~~~~~~i~~ 74 (175)
|+.||+++++|++.+.++..+.....+.. ..+.+.+......++++.. ++++||++.+...... ..+.++|..
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~-~~~ivG~~~~~~~~~~~~~~~~~~i~~ 81 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALL-DGEVVGMIGLHLQFHLHHVNWIGEIQE 81 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEE-CCEEEEEEEEEecccccccchhheehe
Confidence 57899999999999999865544333332 2233444444445666666 8999999998754321 223456889
Q ss_pred EEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
++|+|++||+|+|+.|+.++++.+++.|+..+.+.+...|..|++||+++||+..+.
T Consensus 82 l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 82 LVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred eEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 999999999999999999999999999999999999999999999999999987643
No 6
>KOG3235|consensus
Probab=99.89 E-value=3.6e-23 Score=128.93 Aligned_cols=151 Identities=38% Similarity=0.639 Sum_probs=136.7
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC--CeeEEEEEEEEEC
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG--DKWHGHVTALTVA 78 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~--~~~~~~i~~~~V~ 78 (175)
+|.||.++++|+-.+..+...+.++.+....+.-....++...+|+.+.+|++||+........+ ....+.|.+++|.
T Consensus 1 ~m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~ 80 (193)
T KOG3235|consen 1 GMNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVK 80 (193)
T ss_pred CcccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeeh
Confidence 57899999999999999999999999999999999999999999999889999999998776633 3336889999999
Q ss_pred cchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHH-hcCcEEEEEEEeeccCCCCcceeEEEecccc
Q psy13682 79 PDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYK-RLGYIVYRTVLEYYSGSPDEDAYDMRKALSR 153 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (175)
..||+.|+|++|+........+ .+...+.+.|..+|.+|+.+|+ .+||++....+.||.+| .+.+.|.++|..
T Consensus 81 rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadG--edAyaM~~~L~~ 155 (193)
T KOG3235|consen 81 RSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADG--EDAYAMRKDLSV 155 (193)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeeccccccccc--HHHHHHHHHHHH
Confidence 9999999999999987777666 6888999999999999999999 99999999999999998 899999999974
No 7
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.89 E-value=8.6e-22 Score=124.80 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=108.4
Q ss_pred cHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHH
Q psy13682 11 DMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAEL 90 (175)
Q Consensus 11 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l 90 (175)
|++.+.++....++.++..+.+...+......++++.. ++++||++.+..... ...+..++|+|++||+|+|++|
T Consensus 1 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vg~~~~~~~~~----~~~i~~~~v~~~~rg~G~g~~l 75 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLARI-GGKVVGYAGVQIVLD----EAHILNIAVKPEYQGQGIGRAL 75 (131)
T ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHhcCCCceEEEEec-CCeEEEEEEEEecCC----CeEEEEEEECHHHcCCCHHHHH
Confidence 57788888888888888888887777654445555554 899999999776543 3567889999999999999999
Q ss_pred HHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEE
Q psy13682 91 MSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDM 147 (175)
Q Consensus 91 l~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m 147 (175)
++.+++++++.+...+.+.+...|..+++||+++||+..+....++..++ .+.++|
T Consensus 76 l~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~-~~~~~~ 131 (131)
T TIGR01575 76 LRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPG-EDAIVM 131 (131)
T ss_pred HHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCC-cccccC
Confidence 99999999999999999999999999999999999999999888776543 555554
No 8
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.89 E-value=6.8e-22 Score=139.37 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=116.0
Q ss_pred eEEeeCCcccHHHHHhcccCccc---cccC-hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLT---ETYG-LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
+.||+++++|++.+.++..+.+. .++. .+.+...+. ....++++.. +|++||++.+..... ...++|..++|
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~-~~~~~~v~~~-~g~iVG~~~~~~~~~--~~~~eI~~i~V 191 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPTYPFPIHDPAYLLETMK-SNVVYFGVED-GGKIIALASAEMDPE--NGNAEMTDFAT 191 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCcEEEEEEE-CCEEEEEEEEecCCC--CCcEEEEEEEE
Confidence 68999999999999998766543 2222 233334443 3445566666 899999998754322 22578989999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCcceeEEEecc
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDEDAYDMRKAL 151 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~~~~~m~~~l 151 (175)
+|+|||+|+|++|++++++++++.|+..+++.+...|.+++++|+|+||+..++.++... +|.+.+..++.|.|
T Consensus 192 ~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 192 LPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 999999999999999999999999999999999999999999999999999999877544 56678889988865
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=6e-21 Score=123.25 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=122.3
Q ss_pred CeEEeeCCcccHHHHHhcccCcccc--------ccChHHHHHHHhcCCc---EEEEEEcCCCcEEEEEEeEeeCCCC-ee
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTE--------TYGLSFYMQYLAHWPE---YFQVAESPTGEIMGYIMGKAEGHGD-KW 68 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~--------~~~~~~~~~~~~~~~~---~~~v~~~~~~~ivG~~~~~~~~~~~-~~ 68 (175)
||.||+.+..|++.+.++++..... +.+.+.+.+++..... ..+++..++|+++|++.+....... -.
T Consensus 1 ~~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~ 80 (169)
T COG1247 1 EMEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYR 80 (169)
T ss_pred CcEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccc
Confidence 6899999999999999997665432 3345555555544322 5667776569999999988766542 22
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEee-ccCCCCcceeEE
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY-YSGSPDEDAYDM 147 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~-~~~~~~~~~~~m 147 (175)
.....+++|+|++||+|+|++|++.+++.+.++|+..+...+..+|.+|+++.+++||+..+..+.. +..+.+.|..+|
T Consensus 81 ~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~ 160 (169)
T COG1247 81 HTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLM 160 (169)
T ss_pred eEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeee
Confidence 2344599999999999999999999999999999999999999999999999999999999998775 334556889999
Q ss_pred Eecccc
Q psy13682 148 RKALSR 153 (175)
Q Consensus 148 ~~~l~~ 153 (175)
.+.|..
T Consensus 161 ~~~l~~ 166 (169)
T COG1247 161 QLLLEE 166 (169)
T ss_pred ehhhcc
Confidence 988865
No 10
>PRK03624 putative acetyltransferase; Provisional
Probab=99.88 E-value=3.7e-21 Score=123.16 Aligned_cols=126 Identities=29% Similarity=0.381 Sum_probs=99.3
Q ss_pred CeEEeeCCcccHHHHHhcccCcc-ccccCh--HHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPL-TETYGL--SFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
++.||+++++|++.+.++....- ..+|.. ..+..........++++.. ++++||++.+..... ...+..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~vG~~~~~~~~~----~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEV-GGEVVGTVMGGYDGH----RGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEc-CCcEEEEEEeeccCC----CceEEEEEE
Confidence 47899999999999999876641 123322 2233334444455666766 789999998764322 356778999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+|+|||+|+|+.|++.+.+++++.|++.+.+.+...|..++++|+|+||+..+.
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 999999999999999999999999999999999999999999999999998765
No 11
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.87 E-value=2.8e-20 Score=125.64 Aligned_cols=149 Identities=10% Similarity=0.072 Sum_probs=108.3
Q ss_pred eEEeeCCcccHHHHHhcccCc--cccccC---------hHH-------HHHHHhcCCcEEEEE-EcCCCcEEEEEEeEee
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP--LTETYG---------LSF-------YMQYLAHWPEYFQVA-ESPTGEIMGYIMGKAE 62 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~--~~~~~~---------~~~-------~~~~~~~~~~~~~v~-~~~~~~ivG~~~~~~~ 62 (175)
+.||+++++|++.+.++..+. +..+|. ... +...........+++ ...++++||.+.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 579999999999999886542 111111 111 111122222333333 3336799999999866
Q ss_pred CCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCC
Q psy13682 63 GHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSP 140 (175)
Q Consensus 63 ~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~ 140 (175)
.......+++ +++|+|++||+|+|+++++.+++++++ .|+++|.+.|...|.+|+++|+|+||+..+...+++. ++.
T Consensus 98 ~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~~~~~~g~ 176 (194)
T PRK10809 98 VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQ 176 (194)
T ss_pred cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeeccccccCCe
Confidence 5422223455 788999999999999999999999998 5999999999999999999999999999998877654 444
Q ss_pred CcceeEEEecc
Q psy13682 141 DEDAYDMRKAL 151 (175)
Q Consensus 141 ~~~~~~m~~~l 151 (175)
+.|.++|.+..
T Consensus 177 ~~d~~~~~~~~ 187 (194)
T PRK10809 177 WRDHVLTALTT 187 (194)
T ss_pred EEEEEEeeeeh
Confidence 57788887643
No 12
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=124.96 Aligned_cols=138 Identities=25% Similarity=0.445 Sum_probs=117.4
Q ss_pred eEEeeCCcccHH--HHHhcccCccc--cccChHHHHHHHhcCCcEEEEEEcC--CC----cEEEEEEeEeeCCCC--eeE
Q psy13682 2 TTLRAFTCDDMF--KFNNVNLDPLT--ETYGLSFYMQYLAHWPEYFQVAESP--TG----EIMGYIMGKAEGHGD--KWH 69 (175)
Q Consensus 2 ~~ir~~~~~d~~--~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~--~~----~ivG~~~~~~~~~~~--~~~ 69 (175)
+.+|++...|+. .+..+....+. .+|+...+...+..++...+++... ++ .++|++......... ...
T Consensus 12 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 91 (177)
T COG0456 12 VTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHE 91 (177)
T ss_pred eehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCc
Confidence 578889999988 78888777777 6899999999999888888888752 23 599999986433311 124
Q ss_pred EEEEEEEECcchhccChHHHHHHHHHHHHHHcCc-cEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCC
Q psy13682 70 GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRA-YFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGS 139 (175)
Q Consensus 70 ~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~-~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 139 (175)
++|..++|+|+|||+|+|++|++++++.+.+.+. ..+.+.|..+|.+|++||+++||+..+...+||.++
T Consensus 92 ~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~ 162 (177)
T COG0456 92 GHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADG 162 (177)
T ss_pred cEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCC
Confidence 7899999999999999999999999999999886 899999999999999999999999999999999876
No 13
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.86 E-value=1.3e-20 Score=123.07 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=97.6
Q ss_pred EeeCCcccHHHHHhcccCccccccCh-HHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchh
Q psy13682 4 LRAFTCDDMFKFNNVNLDPLTETYGL-SFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYR 82 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~r 82 (175)
||+++.+|++.+.+|..+........ ..+...........+++...++++||++.+...... .....+..++|+|++|
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~-~~~~~i~~l~V~p~~r 79 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDR-PDVLFVWQVAVDPRAR 79 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCC-CCeEEEEEEEEChHhc
Confidence 68999999999999987764322111 111222233334566666447899999876544332 2246788999999999
Q ss_pred ccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 83 RLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 83 g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
|+|+|++|++.+++++++.++..+.+.|...|.+|++||+|+||+.....
T Consensus 80 g~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 80 GKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred cCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 99999999999999999999999999999999999999999999876553
No 14
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.86 E-value=2.5e-20 Score=125.54 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=98.2
Q ss_pred eEEeeCCcccHHHHHhcccCccc-----cccC-h----HHHHHHHh----cC-CcEEEEEEcCCCcEEEEEEeEeeCCCC
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLT-----ETYG-L----SFYMQYLA----HW-PEYFQVAESPTGEIMGYIMGKAEGHGD 66 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~-----~~~~-~----~~~~~~~~----~~-~~~~~v~~~~~~~ivG~~~~~~~~~~~ 66 (175)
+.||+++++|++.+.++..+.+. .++. . ..+..++. .. ....+++...+|++||++.+......
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~- 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDT- 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCC-
Confidence 46899999999999999766532 1221 1 11222221 11 22334443447899999998766443
Q ss_pred eeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 67 KWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 67 ~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
.+++..++|+|++||+|+|++|++.++++++++|+..|.+.|..+|.+|++||+|+||+..+..
T Consensus 123 --~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 123 --DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred --ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 4678889999999999999999999999999999999999999999999999999999988764
No 15
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.85 E-value=4.9e-20 Score=120.16 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=96.8
Q ss_pred EeeCCcccHHHHHhcccCc-----cccc---cChHHHHHHHh----cCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEE
Q psy13682 4 LRAFTCDDMFKFNNVNLDP-----LTET---YGLSFYMQYLA----HWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGH 71 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~-----~~~~---~~~~~~~~~~~----~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~ 71 (175)
||+++++|++.+..+..+. +... ...+.....+. ......+++...+|++||++.+..... ....+.
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~-~~~~~~ 79 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDP-YNHTAE 79 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSS-GTTEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeec-cCCEEE
Confidence 7999999999999987432 1111 12222222222 223344444435899999999987655 333455
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHH-HHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDIS-EKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS 137 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~-~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 137 (175)
+ ++.|.|++|++|+|+.|+..+++++ .+.|++.+.+.+...|..+++||+++||+..+..+++..
T Consensus 80 ~-~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 80 L-SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp E-EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred E-eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 5 5888899999999999999999999 789999999999999999999999999999999988755
No 16
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.85 E-value=6.5e-20 Score=123.85 Aligned_cols=128 Identities=18% Similarity=0.292 Sum_probs=98.8
Q ss_pred EEeeCCcccHHHHHhcccCccc-----ccc-Ch----HHHHHHHhc-----CCcEEEEEEcCCCcEEEEEEeEeeCCCCe
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPLT-----ETY-GL----SFYMQYLAH-----WPEYFQVAESPTGEIMGYIMGKAEGHGDK 67 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~~-----~~~-~~----~~~~~~~~~-----~~~~~~v~~~~~~~ivG~~~~~~~~~~~~ 67 (175)
.||+++++|++.+.++..+.+. .+| .. ..+..++.. .....+++...+|++||++.+......
T Consensus 48 ~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~-- 125 (194)
T PRK10975 48 GARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDT-- 125 (194)
T ss_pred CcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCC--
Confidence 5899999999999998655432 122 21 122222221 122455566547899999998765443
Q ss_pred eEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 68 WHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 68 ~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
..++..++|+|++||+|+|++|++.+++++++.|++.+.+.+...|.++++||+|+||+..+...
T Consensus 126 -~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 126 -DARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred -ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 46787889999999999999999999999999999999999999999999999999999988754
No 17
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.85 E-value=1.8e-19 Score=120.20 Aligned_cols=149 Identities=9% Similarity=-0.019 Sum_probs=111.2
Q ss_pred eEEeeCCcccHHHHHhcccCc---------cccc-cChHHHHHHHhc-------CCcEEEEEEcCCCcEEEEEEeEeeCC
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP---------LTET-YGLSFYMQYLAH-------WPEYFQVAESPTGEIMGYIMGKAEGH 64 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~---------~~~~-~~~~~~~~~~~~-------~~~~~~v~~~~~~~ivG~~~~~~~~~ 64 (175)
+.+|+++++|++.+..+..+. ++.. .+.+...+.++. .....+++.. +|++||++.+.....
T Consensus 11 l~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~~~ 89 (179)
T PRK10151 11 LELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFK-EDELIGVLSFNRIEP 89 (179)
T ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEE-CCEEEEEEEEEeecc
Confidence 578999999999988886321 1111 222333333221 1123455555 799999999876543
Q ss_pred CCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCc
Q psy13682 65 GDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDE 142 (175)
Q Consensus 65 ~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~ 142 (175)
. ...+++ +++++|+|||+|+|++++..+++++++ .+++++.+.+...|.+|+++++|+||+..+..++... ++.+.
T Consensus 90 ~-~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~~~ 167 (179)
T PRK10151 90 L-NKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGAYD 167 (179)
T ss_pred C-CCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCEEE
Confidence 2 224566 678999999999999999999999987 5899999999999999999999999999999876543 55568
Q ss_pred ceeEEEecccc
Q psy13682 143 DAYDMRKALSR 153 (175)
Q Consensus 143 ~~~~m~~~l~~ 153 (175)
|.++|.+.+..
T Consensus 168 D~~~~~~~~~~ 178 (179)
T PRK10151 168 DVNLYARIIDS 178 (179)
T ss_pred EEEEEEEeecC
Confidence 89999987754
No 18
>PTZ00330 acetyltransferase; Provisional
Probab=99.85 E-value=1.6e-19 Score=116.79 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=92.8
Q ss_pred eEEeeCCcccHHHHHhcccCcccc-ccChHHHHHHHhc----CC-cEEEEEEcCCCcEEEEEEeEeeCC---CCeeEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTE-TYGLSFYMQYLAH----WP-EYFQVAESPTGEIMGYIMGKAEGH---GDKWHGHV 72 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~-~~~~~~~~~~~~~----~~-~~~~v~~~~~~~ivG~~~~~~~~~---~~~~~~~i 72 (175)
+.||+++++|++.+.++....... ..+.+........ .. ...+++.. +|++||++.+..... .....+++
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~~~i 85 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSP-TQRIVGTASLFVEPKFTRGGKCVGHI 85 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeC-CCEEEEEEEEEeccccccCCCceEEE
Confidence 689999999999999986554332 2333333332221 11 23344444 889999999865432 11124678
Q ss_pred EEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 73 TALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 73 ~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
..++|+|+|||+|+|++|++++++++++.|+..+.+. .|..|++||+|+||+....
T Consensus 86 ~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~---~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 86 EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILD---CTEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEe---cChHHHHHHHHCCCEEece
Confidence 8999999999999999999999999999999888764 4789999999999998754
No 19
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.84 E-value=4.2e-19 Score=119.19 Aligned_cols=149 Identities=19% Similarity=0.271 Sum_probs=111.6
Q ss_pred eEEeeCCcccHHHHHhcccCcc-----c-cccC-hH----HHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPL-----T-ETYG-LS----FYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHG 70 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~-----~-~~~~-~~----~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~ 70 (175)
+++|+++++|++.+.++..+.. . .+.. .. .+...........+++.. +|++||++.+....... ..+
T Consensus 7 l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~iG~~~~~~~~~~~-~~~ 84 (186)
T PRK15130 7 VKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVEC-DGEKAGLVELVEINHVH-RRA 84 (186)
T ss_pred eEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEE-CCEEEEEEEEEeecCCC-CeE
Confidence 6799999999999999865531 1 1111 11 122222333445566665 89999999987654321 234
Q ss_pred EEEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCcceeEEE
Q psy13682 71 HVTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDEDAYDMR 148 (175)
Q Consensus 71 ~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~~~~~m~ 148 (175)
.+ .++|+|+|||+|+|++++..+++++++ .|+.++.+.+...|.+|++||+|+||+..+..++.+. ++.+.|.++|.
T Consensus 85 ~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~~ 163 (186)
T PRK15130 85 EF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRMC 163 (186)
T ss_pred EE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEEE
Confidence 45 699999999999999999999999986 6999999999999999999999999999999876654 55557788888
Q ss_pred ecccc
Q psy13682 149 KALSR 153 (175)
Q Consensus 149 ~~l~~ 153 (175)
..-.+
T Consensus 164 ~~~~~ 168 (186)
T PRK15130 164 IFQHQ 168 (186)
T ss_pred eeHHH
Confidence 76654
No 20
>PRK07757 acetyltransferase; Provisional
Probab=99.83 E-value=9.7e-20 Score=118.45 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=90.9
Q ss_pred CeEEeeCCcccHHHHHhcccCccccc----cChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTET----YGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALT 76 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~ 76 (175)
||+||+++++|++.+.++........ .....+.. ....++++.. +|++||++.+...... .+++..++
T Consensus 1 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~-~~~lvG~~~l~~~~~~---~~~i~~v~ 72 (152)
T PRK07757 1 MMEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYE----NIRDFYVAEE-EGEIVGCCALHILWED---LAEIRSLA 72 (152)
T ss_pred CceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHh----ccCcEEEEEE-CCEEEEEEEEEeccCC---ceEEEEEE
Confidence 78999999999999999865532222 22222222 2234566665 7999999999765543 46788999
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
|+|+|||+|+|++|+..+++.+.+.|+..+.+.+. +.+||+|+||+..+.
T Consensus 73 V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 73 VSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 99999999999999999999999999988766432 468999999999876
No 21
>PRK10514 putative acetyltransferase; Provisional
Probab=99.83 E-value=3.4e-19 Score=114.98 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=92.4
Q ss_pred CeEEeeCCcccHHHHHhcccCcc------ccccChHHHHHHHhc--CCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPL------TETYGLSFYMQYLAH--WPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHV 72 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~------~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i 72 (175)
|+.||+++++|++.+.+++.+.+ ..+...+.+...+.. .....+++...++++||++.+.. ..+
T Consensus 1 m~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~--------~~~ 72 (145)
T PRK10514 1 MISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG--------GHM 72 (145)
T ss_pred CceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec--------CcE
Confidence 88999999999999999875532 112222222222221 11223444433789999998742 235
Q ss_pred EEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEE
Q psy13682 73 TALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDM 147 (175)
Q Consensus 73 ~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m 147 (175)
..++|+|+|||+|+|++|++.+++.+ ..+.+.+...|.+|++||+|+||+..+.......++. .+.+.|
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~~~~~-~~~~~~ 141 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDDQGRP-YPLLHL 141 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCCCCCc-cceEEE
Confidence 57999999999999999999998864 3567888899999999999999999988654333322 444444
No 22
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.82 E-value=7.1e-19 Score=134.56 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=105.4
Q ss_pred eEEeeC-CcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEc-CCCcEEEEEEeEeeCC---CCeeEEEEEEEE
Q psy13682 2 TTLRAF-TCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAES-PTGEIMGYIMGKAEGH---GDKWHGHVTALT 76 (175)
Q Consensus 2 ~~ir~~-~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~~~---~~~~~~~i~~~~ 76 (175)
+.||++ +++|++.+.+++......++....+...+......++++.+ .+|++||++.+..... ......++..++
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~ 162 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLA 162 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEE
Confidence 689997 68999999999888655566666655555444456677764 3689999997543211 111235788999
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
|+|+|||+|+|++|++.+++++++.|+..+.+.|..+|..+++||+|+||+......
T Consensus 163 V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 163 VDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999886654
No 23
>KOG3216|consensus
Probab=99.82 E-value=9e-19 Score=108.91 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=104.2
Q ss_pred eEEeeCCcccHHHHHhcccCc--c-----ccccChHHHHH--HHhcCCcEEEEEE--cCCCcEEEEEEeEeeCCC--Cee
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP--L-----TETYGLSFYMQ--YLAHWPEYFQVAE--SPTGEIMGYIMGKAEGHG--DKW 68 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~--~-----~~~~~~~~~~~--~~~~~~~~~~v~~--~~~~~ivG~~~~~~~~~~--~~~ 68 (175)
+.||+++++|.+.+.+|..+- + +...+...+.. .+++.-..++++. ..++.++|++.+...... ...
T Consensus 4 ~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~ 83 (163)
T KOG3216|consen 4 IRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQ 83 (163)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccccc
Confidence 689999999999999886442 1 11222333333 2333333444433 236789999998876654 223
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCC
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGS 139 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 139 (175)
..++..++|.|+|||+|+|+.|++.+.+.|.+.|+.++...|...|.+|+.||++.|++..+...-+..+|
T Consensus 84 ~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l~r~~G 154 (163)
T KOG3216|consen 84 GIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRLFRRTG 154 (163)
T ss_pred eEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccceeEEEEech
Confidence 57899999999999999999999999999999999999999999999999999999999887755444443
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.82 E-value=5.5e-19 Score=116.59 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=91.0
Q ss_pred CeEEeeCCcccHHHHHhcccCcccccc-ChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECc
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETY-GLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAP 79 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~ 79 (175)
++++|+++++|.+.+.++......... ........+.. ...++++...++++||++.+...... .+.+..++|+|
T Consensus 5 ~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~~~~iiG~~~~~~~~~~---~~~i~~l~V~p 80 (169)
T PRK07922 5 AITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEA-VQEFWVAEHLDGEVVGCGALHVMWED---LAEIRTVAVDP 80 (169)
T ss_pred CceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhh-cCcEEEEEecCCcEEEEEEEeecCCC---ceEEEEEEECH
Confidence 478999999999999998754332211 11112222222 23466776238999999988765432 46788899999
Q ss_pred chhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 80 DYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 80 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
++||+|+|++|++++++++++.|+..+.+.+. +++||+|+||+..+.
T Consensus 81 ~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 81 AARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 99999999999999999999999999887643 378999999998754
No 25
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.82 E-value=1.7e-18 Score=112.58 Aligned_cols=129 Identities=23% Similarity=0.224 Sum_probs=95.2
Q ss_pred EeeCC-cccHHHHHhcccCc----c-ccccC---hHHHHHHHh-cCCcEEEEEEcCCCcEEEEEEeEeeCCC---CeeEE
Q psy13682 4 LRAFT-CDDMFKFNNVNLDP----L-TETYG---LSFYMQYLA-HWPEYFQVAESPTGEIMGYIMGKAEGHG---DKWHG 70 (175)
Q Consensus 4 ir~~~-~~d~~~l~~l~~~~----~-~~~~~---~~~~~~~~~-~~~~~~~v~~~~~~~ivG~~~~~~~~~~---~~~~~ 70 (175)
||+++ .+|++.|.++..+. + ...++ .+.+.+.+. ......+++.. +|+++|++.+...... .....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-dg~~~g~~~~~~~~~~~~~~~~~~ 79 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAED-DGEPIGYFEIYWPDEDYDADDGDR 79 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEE-TTEEEEEEEEEEGGGSS---TTEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEE-CCEEEEEEEEecccccccCCCCEE
Confidence 69999 99999999987654 2 22222 233444553 33446677776 8999999988653221 22256
Q ss_pred EEEEEEECcchhccChHHHHHHHHHHHHHHc-CccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 71 HVTALTVAPDYRRLGIAAELMSWLEDISEKK-RAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 71 ~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
.++.++++|++||+|+|+.+++.+++.+++. ++..+.+.+..+|.+|+++|+|+||+..++..
T Consensus 80 ~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 80 GIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 6778899999999999999999999999986 89999999999999999999999999999974
No 26
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.81 E-value=6.7e-19 Score=102.95 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=73.5
Q ss_pred EcCCCcEEEEEEeEeeCCCC--eeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 47 ESPTGEIMGYIMGKAEGHGD--KWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 47 ~~~~~~ivG~~~~~~~~~~~--~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
++ +|++||++.+....... ....++..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+..+|..+++||+|+
T Consensus 2 ~~-~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 2 EE-DGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EE-TTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred cC-CCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 44 89999999998877642 3478999999999999999999999999999999999999999999999999999999
Q ss_pred CcE
Q psy13682 125 GYI 127 (175)
Q Consensus 125 Gf~ 127 (175)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 27
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.81 E-value=2.4e-18 Score=111.66 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=93.5
Q ss_pred eEEeeCCcccHH-HHHhcccCccc-cccChHHHHHHHh---c-C-CcEEEEEEc-CCCcEEEEEEeEeeC---CCCeeEE
Q psy13682 2 TTLRAFTCDDMF-KFNNVNLDPLT-ETYGLSFYMQYLA---H-W-PEYFQVAES-PTGEIMGYIMGKAEG---HGDKWHG 70 (175)
Q Consensus 2 ~~ir~~~~~d~~-~l~~l~~~~~~-~~~~~~~~~~~~~---~-~-~~~~~v~~~-~~~~ivG~~~~~~~~---~~~~~~~ 70 (175)
+.||+++++|.+ .+..+..+... .+++.+.+.+.+. . . ....+++.+ .++++||++.+.... ......+
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~ 86 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVG 86 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEE
Confidence 679999999988 47777655332 3455555544442 2 2 233444443 158999999875322 1122345
Q ss_pred EEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 71 HVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 71 ~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
++..++|+|+|||+|+|+.|++.+++++++.|+.++.+.+..+|. +||+|+||+..+.
T Consensus 87 ~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 87 HIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 678899999999999999999999999999999999999998884 6999999998764
No 28
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.81 E-value=2e-18 Score=112.66 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=103.8
Q ss_pred EEeeCCcccHHHHHhcccCcc------ccc-cChHH---HHHHH-hcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEE
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPL------TET-YGLSF---YMQYL-AHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGH 71 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~------~~~-~~~~~---~~~~~-~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~ 71 (175)
.+||++++|++.+.++..+.. ..+ .+... +...+ .......+++.. +|++||++.+...... .....
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~vG~~~~~~~~~~-~~~~~ 79 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQ-ESRPIGVISFTDINLV-HKSAF 79 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEE-CCEEEEEEEEEecChh-hCeEE
Confidence 479999999999999865431 111 22222 22222 222334555555 8999999999866532 12344
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc-CCCCcceeEE
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS-GSPDEDAYDM 147 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~-~~~~~~~~~m 147 (175)
+ ++++.|.+| +|+|++++..+++++++ .++..+.+.|...|.+|++||+|+||+..+..+++.. +|...|.++|
T Consensus 80 ~-g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~ 155 (156)
T TIGR03585 80 W-GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM 155 (156)
T ss_pred E-EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEe
Confidence 5 456999999 99999999999999986 6999999999999999999999999999999877644 4445666665
No 29
>PHA00673 acetyltransferase domain containing protein
Probab=99.80 E-value=1.9e-18 Score=110.17 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=95.9
Q ss_pred eCCcccHHHHHhcccCcc-c---c-ccC----hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC---CeeEEEEE
Q psy13682 6 AFTCDDMFKFNNVNLDPL-T---E-TYG----LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG---DKWHGHVT 73 (175)
Q Consensus 6 ~~~~~d~~~l~~l~~~~~-~---~-~~~----~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~---~~~~~~i~ 73 (175)
.++.+|++.|..|..+.- . + ... ...+......+....+++.+ +|++||++.+...+.. ..+.+.|.
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~-~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFR-GEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEE-CCEEEEEEEEEEecCCccCCccEEEEE
Confidence 367899999999865521 0 0 111 11245555666667777876 8999999998777643 34567899
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
.++|+|++||+|||++|++++++++++.|+..+++... .+...+.||.++|++...+
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~-p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGP-TEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecC-CCccchHHHHhCCchhhch
Confidence 99999999999999999999999999999999999654 4467899999999998754
No 30
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.80 E-value=2.3e-18 Score=108.66 Aligned_cols=119 Identities=20% Similarity=0.300 Sum_probs=90.6
Q ss_pred EEeeCCcccHHHHHhcccCccccccChHH----HHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCC----CCeeEEEEEE
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPLTETYGLSF----YMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGH----GDKWHGHVTA 74 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~----~~~~~~~i~~ 74 (175)
+||+++++|++++.++...+|........ ....+. ++..+++.+ ++++||.+.+.+..- .....+.+..
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~ivg~~~~~~~~~~~~g~~~~~~~i~~ 77 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYG--PGRCVVAED-DGKIVGHVGLIPRRLSVGGKKFKAAYIGD 77 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH--TTEEEEEEE-TTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccC--cCcEEEEEE-CCEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence 48999999999999999999876655541 222222 457788887 999999999877531 1234678999
Q ss_pred EEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
++|+|+|||+|+|++|++++++.+++.|+..+.+.. ....||+++||+.+
T Consensus 78 v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 78 VAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 999999999999999999999999999999777743 33799999999864
No 31
>PRK09831 putative acyltransferase; Provisional
Probab=99.77 E-value=2.2e-18 Score=111.46 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=92.3
Q ss_pred eEEeeCCcccHHHHHhcccCcccc----ccChHH-----------HHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCC
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTE----TYGLSF-----------YMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGD 66 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~ 66 (175)
|+||+++++|++.+.++..+.+.. .++.+. +...+. ...++++.. +|++||++.+..
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~~iiG~~~~~~----- 72 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA--KSQVRVAVI-NAQPVGFITCIE----- 72 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh--cCceEEEEE-CCEEEEEEEehh-----
Confidence 468999999999999986654322 222221 122222 234666766 899999988742
Q ss_pred eeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeE
Q psy13682 67 KWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYD 146 (175)
Q Consensus 67 ~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~ 146 (175)
.++..++|+|++||+|+|++|++++++.+++ + .+. .|..+++||+|+||+..+..+.-.. +...+.++
T Consensus 73 ---~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l--~v~-~~~~a~~~Y~k~Gf~~~g~~~~~~~-g~~~~~~~ 140 (147)
T PRK09831 73 ---HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----L--TVD-ASITAKPFFERYGFQTVKQQRVECR-GEWFINFY 140 (147)
T ss_pred ---ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----e--Eee-cchhhHHHHHHCCCEEeeccceEEC-CEEEEeeE
Confidence 3467899999999999999999999998865 2 332 3578999999999999999653333 33467777
Q ss_pred EEec
Q psy13682 147 MRKA 150 (175)
Q Consensus 147 m~~~ 150 (175)
|.|.
T Consensus 141 m~~~ 144 (147)
T PRK09831 141 MRYK 144 (147)
T ss_pred EEec
Confidence 7764
No 32
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.77 E-value=1.6e-17 Score=120.10 Aligned_cols=123 Identities=11% Similarity=0.143 Sum_probs=99.5
Q ss_pred eEEeeCCcccHHHHHhcccCc--cc---cccChHHHHHHHhcCCcEEEEEE-c--CCCcEEEEEEeEeeCCCCeeEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP--LT---ETYGLSFYMQYLAHWPEYFQVAE-S--PTGEIMGYIMGKAEGHGDKWHGHVT 73 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~-~--~~~~ivG~~~~~~~~~~~~~~~~i~ 73 (175)
++||+++++|++.+.+|.... +. ..++...+.+.+... ..+.+.. + .++.+||++.+..... .++|.
T Consensus 187 ~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~~~~~~~~d~~gd~givG~~~~~~~~~----~~~I~ 261 (320)
T TIGR01686 187 LNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-EIVTVSMSDRFGDSGIIGIFVFEKKEG----NLFID 261 (320)
T ss_pred EEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-CEEEEEEEecCCCCceEEEEEEEecCC----cEEEE
Confidence 789999999999999997554 32 456777777777654 3332322 2 2578999998866443 47899
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEe--cCHHHHHHHHhcCcEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV--SNTVAITMYKRLGYIVY 129 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~--~n~~~~~~y~k~Gf~~~ 129 (175)
.++|+|++||+|+|+.|+.++++.+++.|+..+.+.+.. .|.+++.||+++||+..
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 999999999999999999999999999999999998754 79999999999999853
No 33
>PRK10562 putative acetyltransferase; Provisional
Probab=99.76 E-value=5.4e-17 Score=104.71 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=93.8
Q ss_pred EeeCCcccHHHHHhcccCcc--ccccChHH-HH-------HHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEE
Q psy13682 4 LRAFTCDDMFKFNNVNLDPL--TETYGLSF-YM-------QYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVT 73 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~~--~~~~~~~~-~~-------~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~ 73 (175)
||+++.+|++.+.++..+.. ..++.... +. +.... ....+++.. ++++||++.+... ..+.
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~iG~~~~~~~-------~~i~ 72 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLP-AAQTWVWEE-DGKLLGFVSVLEG-------RFVG 72 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcC-cccEEEEEE-CCEEEEEEEEeec-------cEEE
Confidence 79999999999999865432 22222111 11 11111 223455555 7899999987532 2466
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecc
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKAL 151 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l 151 (175)
.++|+|+|||+|+|+.|++++++. ...+.+.+...|..|++||+|+||+..+. .++.+.+ .+.++|...-
T Consensus 73 ~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~-~~~~~~~~~~ 142 (145)
T PRK10562 73 ALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQ-HPTWIMSWQA 142 (145)
T ss_pred EEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCC-CEEEEEEecC
Confidence 799999999999999999988774 34677888899999999999999999986 3444433 7888888654
No 34
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.76 E-value=6.7e-18 Score=106.23 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred eEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEe-eCCCCeeEEEEEEEEECcc
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKA-EGHGDKWHGHVTALTVAPD 80 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~-~~~~~~~~~~i~~~~V~~~ 80 (175)
+.||.++.+|+..|.++........--.......+......+.+++. +|.+||++.+.+ .... .+++..++|+|+
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~-~g~viGC~aL~~~~~~~---~gE~~~laV~pd 76 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIER-DGKVIGCAALHPVLEED---LGELRSLAVHPD 76 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeee-CCcEEEEEeecccCccC---eeeEEEEEECHH
Confidence 36899999999999998755433222112223333333445777777 999999999995 3333 688999999999
Q ss_pred hhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 81 YRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+||+|+|..|+..++..|++.|.+.+++.+. .+..||+++||+....
T Consensus 77 ~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 77 YRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 9999999999999999999999999988653 6789999999998865
No 35
>PRK10314 putative acyltransferase; Provisional
Probab=99.76 E-value=3.6e-18 Score=110.84 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=97.0
Q ss_pred eeCCcccHHHHHhcccCccccccChH--HHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchh
Q psy13682 5 RAFTCDDMFKFNNVNLDPLTETYGLS--FYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYR 82 (175)
Q Consensus 5 r~~~~~d~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~r 82 (175)
..++.+++..+..+..+.|-...... .+...-.......+++.. ++++||++.+...... ....+|..++|+|+||
T Consensus 10 ~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~-~~~~vg~~r~~~~~~~-~~~~~i~rv~V~~~~r 87 (153)
T PRK10314 10 SELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWK-NDELVAYARILKSDDD-LEPVVIGRVIVSEALR 87 (153)
T ss_pred hhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEE-CCEEEEEEEEecCCCC-CCCEEEEEEEECHHHh
Confidence 44666777788888777764332222 111110011245566665 8999999998765432 2247899999999999
Q ss_pred ccChHHHHHHHHHHHHHHc-CccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecc
Q psy13682 83 RLGIAAELMSWLEDISEKK-RAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKAL 151 (175)
Q Consensus 83 g~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l 151 (175)
|+|+|++|++.+++++++. +...+.+.+ +..+.+||+|+||+..+. .|...| .+.+.|.|.+
T Consensus 88 G~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~--~f~~~G--i~h~~M~~~~ 150 (153)
T PRK10314 88 GEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE--VYEEDG--IPHIGMAREV 150 (153)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC--ccccCC--CCcHhhhhhh
Confidence 9999999999999999875 677777753 467899999999999875 333444 7788887655
No 36
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.76 E-value=2.8e-17 Score=102.19 Aligned_cols=87 Identities=28% Similarity=0.412 Sum_probs=69.7
Q ss_pred ChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEE
Q psy13682 28 GLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVD 107 (175)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~ 107 (175)
..+.+.+.+.......+++.. ++++||++.+. . ...|..++|+|+|||+|+|++|+..+++.++. |...+.
T Consensus 31 ~~~~~~~~~~~~~~~~~v~~~-~~~ivG~~~~~---~----~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~ 101 (117)
T PF13673_consen 31 SPEDLEEYLEEGSHTIFVAEE-GGEIVGFAWLE---P----DGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLT 101 (117)
T ss_dssp SHHHHHHHHCTCCCEEEEEEE-TTEEEEEEEEE---T----CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEEc---C----CCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEE
Confidence 455566666665567888887 89999999986 2 13488899999999999999999999999976 888777
Q ss_pred EEEEecCHHHHHHHHhcCc
Q psy13682 108 LFVRVSNTVAITMYKRLGY 126 (175)
Q Consensus 108 ~~~~~~n~~~~~~y~k~Gf 126 (175)
+. .|..+.+||+++||
T Consensus 102 ~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 102 VE---ANERARRFYRKLGF 117 (117)
T ss_dssp EE---C-HHHHHHHHHTT-
T ss_pred EE---eCHHHHHHHHhCCC
Confidence 64 88999999999998
No 37
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.76 E-value=5.5e-17 Score=116.17 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=94.4
Q ss_pred eEEeeCCc-ccHHHHHhcccCccc-----cccChHHHHHHHhc---CCcEEEEEEcC-CCcEEEEEEeEeeCCCCeeEEE
Q psy13682 2 TTLRAFTC-DDMFKFNNVNLDPLT-----ETYGLSFYMQYLAH---WPEYFQVAESP-TGEIMGYIMGKAEGHGDKWHGH 71 (175)
Q Consensus 2 ~~ir~~~~-~d~~~l~~l~~~~~~-----~~~~~~~~~~~~~~---~~~~~~v~~~~-~~~ivG~~~~~~~~~~~~~~~~ 71 (175)
+++|+++. .|.+.+.++....+. ..|..+.+...... .+...+++..+ ++++||++.+..... .....+
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~-~~~~~~ 228 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPD-EPALGE 228 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCC-CCceeE
Confidence 46788864 477777676554443 23555444433221 13345666552 589999976554332 112356
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+..++|+|+|||+|+|++|+..+++++++.|+..+.+.+...|..+++||+|+||+..+..
T Consensus 229 i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 229 VYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 6678999999999999999999999999999999999999999999999999999987654
No 38
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.76 E-value=5.1e-17 Score=105.29 Aligned_cols=146 Identities=21% Similarity=0.181 Sum_probs=115.8
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcC----CcEEEEEEcCCCcEEEEEEeEeeCCC--CeeEEEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHW----PEYFQVAESPTGEIMGYIMGKAEGHG--DKWHGHVTA 74 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~ivG~~~~~~~~~~--~~~~~~i~~ 74 (175)
||.||..++.|++.+.++..+++. +.......+.+... ....+|+.+ +|++||.+.++...-. ......+..
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~-~~~e~~~v~~lR~~~~~~~~LslVA~d-~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFG-PGREAKLVDKLREGGRPDLTLSLVAED-DGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhh-cchHHHHHHHHHhcCCcccceeEEEee-CCEEEEEEEEeEEEecCcccceEEEEe
Confidence 588999999999999999888876 44444444555433 457889998 6999999999887654 333456789
Q ss_pred EEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEeccccc
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRD 154 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~~ 154 (175)
++|+|++||||||++|++..++.++..|+..+.+ .. ...+|.+.||+......-+.+.+ ..+...|.+.|.+.
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~v---lG---dp~YY~rfGF~~~~~~~l~~p~~-~~~~~fl~~~L~~~ 153 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVV---LG---DPTYYSRFGFEPAAGAKLYAPGP-VPDERFLALELGDG 153 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEE---ec---CcccccccCcEEccccccccCCC-CCCceEEEEEccCC
Confidence 9999999999999999999999999999998877 22 36689999999998765444433 47789999999874
Q ss_pred C
Q psy13682 155 V 155 (175)
Q Consensus 155 ~ 155 (175)
.
T Consensus 154 ~ 154 (171)
T COG3153 154 A 154 (171)
T ss_pred c
Confidence 3
No 39
>PLN02825 amino-acid N-acetyltransferase
Probab=99.75 E-value=1.1e-17 Score=126.00 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=92.7
Q ss_pred EEeeCCcccHHHHHhcccCcccc----ccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEEC
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPLTE----TYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVA 78 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~ 78 (175)
.||+++.+|++.+.+|....... .++.+.+.. ....+++++. ||++||++.+.+.... ..+++..++|+
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~----ei~~f~V~e~-Dg~IVG~aal~~~~~~--~~aEI~~laV~ 441 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLR----ALDSFVVVER-EGSIIACAALFPFFEE--KCGEVAAIAVS 441 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHh----cCCcEEEEEE-CCEEEEEEEEEeecCC--CcEEEEEEEEC
Confidence 48999999999999987553222 223333322 2345677776 8999999988765432 25788899999
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
|+|||+|+|++|++++++.++++|++.+++.+ ..+.+||+++||+..+.
T Consensus 442 P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 442 PECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 99999999999999999999999999998865 35689999999998876
No 40
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.75 E-value=1.2e-17 Score=125.03 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=92.4
Q ss_pred eEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcch
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDY 81 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~ 81 (175)
+.||+++.+|++.+.++........+......+.+......++++.. ++++||++.+.+.... ..+++..++|+|+|
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V~~~-dg~iVG~~~~~~~~~~--~~~~I~~l~V~p~~ 359 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSIIEH-DGNIIGCAALYPYAEE--DCGEMACLAVSPEY 359 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEEEEE-CCEEEEEEEEEecCCC--CeEEEEEEEECHHH
Confidence 36899999999999998643222222222223333333344666665 7999999998876432 25788899999999
Q ss_pred hccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 82 RRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 82 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
||+|+|++|+++++++++++|+..+++. ..| +.+||+++||+..+.
T Consensus 360 Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 360 QDGGRGERLLAHIEDRARQMGISRLFVL--TTR--TGHWFRERGFQTASV 405 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCEEEEe--ecc--hHHHHHHCCCEECCh
Confidence 9999999999999999999999987643 333 579999999999877
No 41
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.75 E-value=9.7e-17 Score=103.00 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=88.0
Q ss_pred eEEeeCCcccHHHHHhcccCc----c---ccc-cChHHHHHHHh----cCC---cEEEEEE-cCCCcEEEEEEeEeeCCC
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP----L---TET-YGLSFYMQYLA----HWP---EYFQVAE-SPTGEIMGYIMGKAEGHG 65 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~----~---~~~-~~~~~~~~~~~----~~~---~~~~v~~-~~~~~ivG~~~~~~~~~~ 65 (175)
++||+++++|++.+.++..+. + ... .+.....+++. ... ...+++. .+++++||++.+.....
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~- 80 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK- 80 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET-
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc-
Confidence 679999999999999987532 1 111 23333333332 111 2233343 33457999999955432
Q ss_pred CeeEEEEEEEEECcchhccChHHHHHHHHHHHHH-HcCccEEEEEEEecCHHHHHHHHhcCcE
Q psy13682 66 DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISE-KKRAYFVDLFVRVSNTVAITMYKRLGYI 127 (175)
Q Consensus 66 ~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~y~k~Gf~ 127 (175)
....+++ ++.|.|++||+|+|++++..++++++ +.|+..+.+.+..+|.+|+++++|+||+
T Consensus 81 ~~~~~ei-g~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 NNNWAEI-GYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCCcccc-ccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 2225666 68899999999999999999999996 5799999999999999999999999996
No 42
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.75 E-value=1.2e-17 Score=125.54 Aligned_cols=119 Identities=20% Similarity=0.194 Sum_probs=91.1
Q ss_pred eEEeeCCcccHHHHHhcccC----ccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLD----PLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
+.||+++.+|++.+.++... .+...+..+. +......++++.. ++++||++.+...... ..+++..++|
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~----l~~~~~~~~va~~-dg~iVG~~~~~~~~~~--~~~~I~~l~V 367 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQGILVRRSREQ----LEREIDKFTVIER-DGLIIGCAALYPFPEE--KMGEMACLAV 367 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHH----HhcccCcEEEEEE-CCEEEEEEEEEEcCCC--CeEEEEEEEE
Confidence 46899999999999987542 2222333332 3333344666766 8999999987765431 2577889999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+|+|||+|+|++|+++++++++++|+..+.+. +..+++||+++||+..+.
T Consensus 368 ~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 368 HPDYRGSGRGERLLKRIEQRARQLGLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 99999999999999999999999999988653 246799999999999876
No 43
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.73 E-value=3.1e-17 Score=127.50 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=90.7
Q ss_pred eEEeeCCcccHHHHHhcccCcc----ccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPL----TETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
|+||+++++|++.+.++..... ..++... .+......++++.. +|++||++.+...... ..++..++|
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~----~l~~~~~~~~Va~~-~g~IVG~~~l~~~~~~---~~~I~~i~V 535 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRN----ELVRDIGSFAVAEH-HGEVTGCASLYIYDSG---LAEIRSLGV 535 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHH----HHhcccCcEEEEEE-CCEEEEEEEEEEcCCC---eEEEEEEEE
Confidence 6799999999999988864321 1122222 22223345667776 8999999998765433 577999999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+|+|||+|+|+.|++++++++++.|+..+.+.+ .+.+||+|+||+..++.
T Consensus 536 ~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 536 EAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 999999999999999999999999999988753 24699999999988763
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.72 E-value=2e-16 Score=113.34 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=88.4
Q ss_pred eeCCcccHHHHHhcccCcc----ccccChHHHHHHHhc---CCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 5 RAFTCDDMFKFNNVNLDPL----TETYGLSFYMQYLAH---WPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 5 r~~~~~d~~~l~~l~~~~~----~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
.+++++|++++.+|...+. ..+++.... ..+.. .+...+++.. ++++||++.+...... ..++..++|
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~---~~~~~~l~V 78 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVD-SDPIVGYANLVPARGT---DPAMAELVV 78 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEE-CCEEEEEEEEEcCCCC---cceEEEEEE
Confidence 3678899999888865432 234555443 33322 1234666665 7899999998775432 256888999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+|+|||+|+|++|++++++.+. ..+.+.+...|..+++||+++||+.....
T Consensus 79 ~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~ 129 (292)
T TIGR03448 79 HPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTREL 129 (292)
T ss_pred CHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEE
Confidence 9999999999999999998764 45677788889999999999999988653
No 45
>PHA01807 hypothetical protein
Probab=99.71 E-value=2.5e-16 Score=101.51 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=84.4
Q ss_pred CCcccHHHHHhcccC---ccccc--cC--hH---HHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCe-eEEEEEEE
Q psy13682 7 FTCDDMFKFNNVNLD---PLTET--YG--LS---FYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDK-WHGHVTAL 75 (175)
Q Consensus 7 ~~~~d~~~l~~l~~~---~~~~~--~~--~~---~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~-~~~~i~~~ 75 (175)
++.+|+..+..+... .+++. |. .+ .+.+.+.......+++.. +|++||++.+........ ....+..+
T Consensus 9 ~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~-dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 9 AKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFR-DGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEE-CCEEEEEEEEEcCCCcceeeeccceeE
Confidence 456788887777543 34432 32 22 122222333445566766 899999999876553211 11223457
Q ss_pred EECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 76 TVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 76 ~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
+|+|+|||+|+|+.|++.+++++++.|+..+.+.+..+|.++++||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999975
No 46
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.71 E-value=7.5e-16 Score=89.13 Aligned_cols=77 Identities=35% Similarity=0.575 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHH
Q psy13682 41 EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITM 120 (175)
Q Consensus 41 ~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 120 (175)
+.++++.+ ++++||++.+..... ...+..++|+|++||+|+|+.|++.+.+.+.. ..+++.+ ++.+.+|
T Consensus 3 ~~~~~~~~-~~~ivG~~~~~~~~~----~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~f 71 (79)
T PF13508_consen 3 ERFFVAED-DGEIVGFIRLWPNED----FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIKF 71 (79)
T ss_dssp EEEEEEEE-TTEEEEEEEEEETTT----EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHHH
T ss_pred cEEEEEEE-CCEEEEEEEEEEcCC----EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHHH
Confidence 45666766 999999999976655 57899999999999999999999999888843 4455543 5789999
Q ss_pred HHhcCcEE
Q psy13682 121 YKRLGYIV 128 (175)
Q Consensus 121 y~k~Gf~~ 128 (175)
|+++||++
T Consensus 72 Y~~~GF~~ 79 (79)
T PF13508_consen 72 YEKLGFEE 79 (79)
T ss_dssp HHHTTEEE
T ss_pred HHHCcCCC
Confidence 99999985
No 47
>KOG3138|consensus
Probab=99.70 E-value=1.5e-16 Score=104.22 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=119.0
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCC-------eeEEEEE
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGD-------KWHGHVT 73 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~-------~~~~~i~ 73 (175)
++.++..++.++.++..|..+.++..+...++...+.. .+..-+|.. ++..||........... .....+.
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~-~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~ 93 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYY-NEIAVGAVACKLIKFVQNAKRLFGNRVIYIL 93 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhh-ccccccceeeeehhhhhhhhhhhccceeEEE
Confidence 46789999999999999999999988888877766665 333334444 44445554444433221 1136788
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcC-ccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEeccc
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKR-AYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALS 152 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g-~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~ 152 (175)
.+.|.+.||.+|||+.|++++.+++.+.. ++.+++++...|..++.||++.||+...+...||......+...|.+.+.
T Consensus 94 ~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l~~~~~ 173 (187)
T KOG3138|consen 94 SLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFLRKLLI 173 (187)
T ss_pred eecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhhhhhee
Confidence 99999999999999999999999999876 88999999999999999999999999999999988555466777777765
Q ss_pred c
Q psy13682 153 R 153 (175)
Q Consensus 153 ~ 153 (175)
.
T Consensus 174 ~ 174 (187)
T KOG3138|consen 174 H 174 (187)
T ss_pred c
Confidence 4
No 48
>PRK01346 hypothetical protein; Provisional
Probab=99.68 E-value=7.7e-16 Score=115.14 Aligned_cols=128 Identities=20% Similarity=0.094 Sum_probs=96.1
Q ss_pred eEEeeCCcccHHHHHhcccCccccccChHHHHHHHh-cCCcEEEEEEcCCCcEEEEEEeEeeC-----CCCeeEEEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLA-HWPEYFQVAESPTGEIMGYIMGKAEG-----HGDKWHGHVTAL 75 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ivG~~~~~~~~-----~~~~~~~~i~~~ 75 (175)
|+||+++++|++++.++...++....+......... ..+...+++.+ ++++||++.+.... ........+..+
T Consensus 7 ~~iR~~~~~D~~~i~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~va~~-~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v 85 (411)
T PRK01346 7 ITIRTATEEDWPAWFRAAATGFGDSPSDEELEAWRALVEPDRTLGAFD-GDEVVGTAGAFDLRLTVPGGAVLPAAGVTAV 85 (411)
T ss_pred ceeecCCHHHHHHHHHHHHHHcCCCCChHHHHHHHHhcCcCCeEEEEE-CCEEEEEEEEeccccccCCCCccceeEEEEE
Confidence 689999999999999998888765444333332222 12334566766 89999999976543 112236789999
Q ss_pred EECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEee
Q psy13682 76 TVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135 (175)
Q Consensus 76 ~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 135 (175)
+|+|+|||+|+|++|++++++.+++.|...+.+.+. + .+||+|+||+.......+
T Consensus 86 ~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~--~---~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 86 TVAPTHRRRGLLTALMREQLRRIRERGEPVAALTAS--E---GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred EEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECC--c---hhhHhhCCCeeccceEEE
Confidence 999999999999999999999999999887777532 2 479999999988765443
No 49
>KOG3396|consensus
Probab=99.67 E-value=1.2e-15 Score=93.11 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=94.6
Q ss_pred eEEeeCCcccHHH-HHhcccCcc-ccccChHHHHHHHh----cCC-cEEEEEEc-CCCcEEEEEEeEeeCCC---CeeEE
Q psy13682 2 TTLRAFTCDDMFK-FNNVNLDPL-TETYGLSFYMQYLA----HWP-EYFQVAES-PTGEIMGYIMGKAEGHG---DKWHG 70 (175)
Q Consensus 2 ~~ir~~~~~d~~~-l~~l~~~~~-~~~~~~~~~~~~~~----~~~-~~~~v~~~-~~~~ivG~~~~~~~~~~---~~~~~ 70 (175)
+.+||+..+|+.. +.++..+.. ....+++.+..+++ ..+ ....|+++ ..+++||.+++.....- .+..+
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rG 86 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSRG 86 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccccC
Confidence 6799999999986 555544322 22334455544432 223 23344444 24799999998775532 33467
Q ss_pred EEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEE
Q psy13682 71 HVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYR 130 (175)
Q Consensus 71 ~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 130 (175)
++..+.|++++||+++|+.|+..+...+++.|+..+.+.|.+.| ..||+|+||+..+
T Consensus 87 hiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 87 HIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred ceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 89999999999999999999999999999999999999999887 9999999998765
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.60 E-value=7.7e-14 Score=81.64 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=52.3
Q ss_pred EEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 70 GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 70 ~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+.|..++|+|++||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 56889999999999999999999999999998776 46778899999999999999999854
No 51
>KOG2488|consensus
Probab=99.59 E-value=3.1e-14 Score=92.05 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=89.4
Q ss_pred cChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEE
Q psy13682 27 YGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFV 106 (175)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i 106 (175)
|....-...+......++++.+..+.+|||..+....+....+.++..+-|.+.|||+|||+.|++.+...+...+.+.|
T Consensus 78 w~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kV 157 (202)
T KOG2488|consen 78 WDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKV 157 (202)
T ss_pred cCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhh
Confidence 44444455555555677777774559999999988877666677888999999999999999999999999998888899
Q ss_pred EEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 107 DLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 107 ~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
.+.|...|.+|+.||.++||......+
T Consensus 158 mLTVf~~N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 158 MLTVFSENIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred eeeeecccchhHHHHHHcCcccCCCCC
Confidence 999999999999999999999875543
No 52
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.58 E-value=9.8e-14 Score=94.56 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=74.2
Q ss_pred EEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHH
Q psy13682 42 YFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMY 121 (175)
Q Consensus 42 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y 121 (175)
..+.... +|++|+.+........ ++.|.+++++|+|||+|+|+.++..+.+.....|...+ +.+..+|+.|.+.|
T Consensus 178 ~~~f~~~-d~~iVa~A~t~a~~~~---~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~-L~~~~~N~~A~~iY 252 (268)
T COG3393 178 RTYFLEG-DGKIVAKAETAAENPA---YAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPC-LFVNSDNPVARRIY 252 (268)
T ss_pred eEEEEcc-CCcEEEeeeccccCCc---ceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeE-EEEecCCHHHHHHH
Confidence 3444444 6699999998777665 78899999999999999999999999999988887754 55668999999999
Q ss_pred HhcCcEEEEEEEe
Q psy13682 122 KRLGYIVYRTVLE 134 (175)
Q Consensus 122 ~k~Gf~~~~~~~~ 134 (175)
+|.||+..+....
T Consensus 253 ~riGF~~~g~~~~ 265 (268)
T COG3393 253 QRIGFREIGEFRE 265 (268)
T ss_pred HHhCCeecceEEE
Confidence 9999999987643
No 53
>PRK13688 hypothetical protein; Provisional
Probab=99.57 E-value=4.3e-14 Score=91.63 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=70.9
Q ss_pred EeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCC-------CCeeEEEEEEEE
Q psy13682 4 LRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGH-------GDKWHGHVTALT 76 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~-------~~~~~~~i~~~~ 76 (175)
+|+++.+|+..+.++....+. ......++++.+ ++++||++.+..... .....+.|..++
T Consensus 20 ~~~~~~~dl~~l~~l~~~~f~------------~~~~~~~~~~~~-~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~ 86 (156)
T PRK13688 20 FREFGNQELSMLEELQANIIE------------NDSESPFYGIYY-GDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLE 86 (156)
T ss_pred HHHhcHHHHHHHHhhhhhEee------------cCCCCCEEEEEE-CCEEEEEEEEEecCCcccccccCCCCeEEEEEEE
Confidence 345555555555555444431 111234555665 889999987744321 112357899999
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
|+|+|||+|+|++|++.+. +.+.. +.+...| .+.+||+|+||+..+..
T Consensus 87 V~p~~rgkGiG~~Ll~~a~----~~~~~---~~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 87 VLPKYQNRGYGEMLVDFAK----SFQLP---IKTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred ECHHHcCCCHHHHHHHHHH----HhCCe---EEEEecc-chHHHHHhCCCEEeEEe
Confidence 9999999999999997543 33433 2344455 57899999999999875
No 54
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.57 E-value=8.8e-14 Score=88.82 Aligned_cols=131 Identities=20% Similarity=0.202 Sum_probs=95.9
Q ss_pred eEEeeCCcccHHHHHhcccCc-----------cccccChHHHHHHHh---cC-----------CcEEEEEEcCCCcEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP-----------LTETYGLSFYMQYLA---HW-----------PEYFQVAESPTGEIMGY 56 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~-----------~~~~~~~~~~~~~~~---~~-----------~~~~~v~~~~~~~ivG~ 56 (175)
|.++..+..|.++++++..+. +...+....+..+++ .. +...+++...++++||+
T Consensus 4 ~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~ 83 (174)
T COG3981 4 MKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGF 83 (174)
T ss_pred ccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEE
Confidence 567777888888888864332 111111123333332 11 22445555558999999
Q ss_pred EEeEeeCCC--CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 57 IMGKAEGHG--DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 57 ~~~~~~~~~--~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
+.+...-+. ...-++| +..|+|+.||+|+|++|++.+++.|++.|.+.+.++|+.+|.+|.+..+++|-....++.
T Consensus 84 i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~~ 161 (174)
T COG3981 84 INLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEFF 161 (174)
T ss_pred EEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEEc
Confidence 998765543 1112456 789999999999999999999999999999999999999999999999999999987754
No 55
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.53 E-value=1.3e-13 Score=98.03 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=64.6
Q ss_pred EEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHh
Q psy13682 44 QVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKR 123 (175)
Q Consensus 44 ~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k 123 (175)
+.+..+++++||++.+.. ..+..++|+|+|||+|+|++|++++++++++.|+..+++.+... +..||+|
T Consensus 8 ~~v~~~~~~iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYek 76 (297)
T cd02169 8 VGIFDDAGELIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFRG 76 (297)
T ss_pred EEEEEECCEEEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHHH
Confidence 333333799999998742 24789999999999999999999999999999999999977544 4799999
Q ss_pred cCcEEEEE
Q psy13682 124 LGYIVYRT 131 (175)
Q Consensus 124 ~Gf~~~~~ 131 (175)
+||+..+.
T Consensus 77 ~GF~~~~~ 84 (297)
T cd02169 77 LGFKELAN 84 (297)
T ss_pred CCCEEecc
Confidence 99999883
No 56
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.2e-13 Score=89.68 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=80.8
Q ss_pred CcEEEEEEeEeeCC-CCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 51 GEIMGYIMGKAEGH-GDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 51 ~~ivG~~~~~~~~~-~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
+++||.+.+..... .....+++ ++.+.|++||+|+|++++..++++++. .++.++.+.|...|.+|+++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 58999999987662 12224455 777899999999999999999999998 7999999999999999999999999999
Q ss_pred EEEEEeec-cCCCCcceeEEEeccc
Q psy13682 129 YRTVLEYY-SGSPDEDAYDMRKALS 152 (175)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~m~~~l~ 152 (175)
.+...... ..+.+.+.+.+.....
T Consensus 156 eg~~~~~~~~~g~~~d~~~~~~~~~ 180 (187)
T COG1670 156 EGELRQHEFIKGRWRDTVLYSLLRD 180 (187)
T ss_pred hhhhhhceeeCCeeeeEEEEEEech
Confidence 99866542 2333456666665443
No 57
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=84.13 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=95.6
Q ss_pred eCCcccHHHHHhcccCccc----cccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcch
Q psy13682 6 AFTCDDMFKFNNVNLDPLT----ETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDY 81 (175)
Q Consensus 6 ~~~~~d~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~ 81 (175)
.++...+-+++.|..+.|- -+|.+-+-.+.+. ....+.+++.+|++++++.+.+....... ..|+.+.|+|++
T Consensus 12 ~Lt~~ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~--~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~ 88 (155)
T COG2153 12 DLTVRELYELLKLRVDVFVVEQNCPYPELDGKDLLG--DTRHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAA 88 (155)
T ss_pred hcCHHHHHHHHHhheeEEEEecCCCCcCcCCccccc--ccceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhh
Confidence 3444555556666655542 2333322222211 12344455558999999999988775433 679999999999
Q ss_pred hccChHHHHHHHHHHHHHHcC-ccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEeccc
Q psy13682 82 RRLGIAAELMSWLEDISEKKR-AYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALS 152 (175)
Q Consensus 82 rg~Gig~~ll~~~~~~~~~~g-~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~ 152 (175)
||+|+|.+||..+++.+.+.. -+.+.+ ......+.||.+.||+..+. .|..+| .+++-|.+...
T Consensus 89 RG~glG~~Lm~~AL~~~~~~~p~~~v~l---~AQahLq~fYa~~GFv~~~e--~yledG--IpHv~M~r~~~ 153 (155)
T COG2153 89 RGQGLGQQLMEKALETAGREWPDKPVYL---GAQAHLQDFYASFGFVRVGE--EYLEDG--IPHVGMIREVI 153 (155)
T ss_pred hccchhHHHHHHHHHHHHhhCCCCCeEE---ehHHHHHHHHHHhCcEEcCc--hhhcCC--CCchhhhhccc
Confidence 999999999999999998853 445666 44578899999999999876 555566 78888876554
No 58
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.46 E-value=2.2e-12 Score=93.06 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=68.7
Q ss_pred cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHH
Q psy13682 41 EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITM 120 (175)
Q Consensus 41 ~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 120 (175)
..++++.+ +|++||++.+.. ..+..++|+|+|||+|+|+.|+.++++.+++.|...+++.+...| .+|
T Consensus 31 d~~vv~~~-~~~lVg~g~l~g--------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~f 98 (332)
T TIGR00124 31 EIFIAVYE-DEEIIGCGGIAG--------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AAL 98 (332)
T ss_pred CEEEEEEE-CCEEEEEEEEec--------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHH
Confidence 45666665 899999998742 237799999999999999999999999999999999999876444 679
Q ss_pred HHhcCcEEEEEEE
Q psy13682 121 YKRLGYIVYRTVL 133 (175)
Q Consensus 121 y~k~Gf~~~~~~~ 133 (175)
|+++||...+...
T Consensus 99 y~klGF~~i~~~~ 111 (332)
T TIGR00124 99 FEYCGFKTLAEAK 111 (332)
T ss_pred HHHcCCEEeeeec
Confidence 9999999998754
No 59
>KOG3397|consensus
Probab=99.45 E-value=1.3e-12 Score=83.40 Aligned_cols=120 Identities=15% Similarity=0.046 Sum_probs=85.6
Q ss_pred ccHHHHHhcccCccccccC--hHHHHHHHhcCCcEEEEEEc-CCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccCh
Q psy13682 10 DDMFKFNNVNLDPLTETYG--LSFYMQYLAHWPEYFQVAES-PTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGI 86 (175)
Q Consensus 10 ~d~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gi 86 (175)
+-+++-.+|.++.|+.... .....+.....+ ..++... ...++||.+.+....+. ...+++..+.|+.+.||+|+
T Consensus 23 ELlk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P-~sL~Ll~E~~~~VigH~rLS~i~n~-~~al~VEsVVV~k~~RG~GF 100 (225)
T KOG3397|consen 23 ELLKESMTLINSEWPRSDTSREHSLKKSCDSPP-MSLLLLNEENDEVLGHSRLSHLPNR-DHALWVESVVVKKDQRGLGF 100 (225)
T ss_pred HHHHHHHHHHhccCCccchhhhhhhhcccCCCC-eeeeeecccccceeeeeccccCCCC-CceeEEEEEEEehhhccccH
Confidence 3344555566666654322 122222222223 3343333 35689999999887764 34688999999999999999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEee
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 135 (175)
|+.+|+.++.+++..|++.+++.+... .+||+++||+....+..+
T Consensus 101 Gk~lMk~~E~~~R~~gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi~~~ 145 (225)
T KOG3397|consen 101 GKFLMKSTEKWMREKGFNEAYLSTDDQ----CRFYESLGYEKCDPIVHS 145 (225)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecccc----hhhhhhhcccccCceecc
Confidence 999999999999999999999976433 789999999987765443
No 60
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.33 E-value=1.2e-10 Score=81.21 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHH
Q psy13682 41 EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITM 120 (175)
Q Consensus 41 ~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 120 (175)
+.-+++.. +|++|+.|........ ..+| .+.++|+|||+|+|+.+...++..+.++|..-.+ ++ .|.+|+++
T Consensus 165 G~Gf~i~~-~~~iVs~~~s~~~~~~---~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~W-Dc--~N~~S~~l 236 (265)
T PF12746_consen 165 GFGFCILH-DGEIVSGCSSYFVYEN---GIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSW-DC--HNLASIAL 236 (265)
T ss_dssp --EEEEEE-TTEEEEEEEEEEEETT---EEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHHH
T ss_pred CcEEEEEE-CCEEEEEEEEEEEECC---EEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCe-eC--CCHHHHHH
Confidence 34555555 7898877766555554 4566 7999999999999999999999999999877533 33 69999999
Q ss_pred HHhcCcEEEEEEEeeccCC
Q psy13682 121 YKRLGYIVYRTVLEYYSGS 139 (175)
Q Consensus 121 y~k~Gf~~~~~~~~~~~~~ 139 (175)
.+|+||+....-.-|+.+.
T Consensus 237 A~kLGf~~~~~Y~~Y~v~~ 255 (265)
T PF12746_consen 237 AEKLGFHFDFEYTAYEVNN 255 (265)
T ss_dssp HHHCT--EEEEEEEE----
T ss_pred HHHcCCcccceeeeeeecc
Confidence 9999999998877776544
No 61
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.31 E-value=2.5e-10 Score=75.96 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred ChHHHHHHHhcCCcEEEEEEcCCC--cEEEEEEeEeeCCC----------------------------------CeeEEE
Q psy13682 28 GLSFYMQYLAHWPEYFQVAESPTG--EIMGYIMGKAEGHG----------------------------------DKWHGH 71 (175)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~--~ivG~~~~~~~~~~----------------------------------~~~~~~ 71 (175)
++.++...+..+....+++.. ++ +++|.+.+.....- ......
T Consensus 14 sPnDL~~LlDaP~h~l~~l~~-~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~R 92 (196)
T PF13718_consen 14 SPNDLQLLLDAPNHRLFVLLQ-PGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGAR 92 (196)
T ss_dssp -HHHHHHHHH-TTEEEEEEE--SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEE
T ss_pred CHHHHHHHhcCCcceeehhcc-CCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhccee
Confidence 456666666766667777776 67 99999988665531 122667
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHH-------------------------HHcCccEEEEEEEecCHHHHHHHHhcCc
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDIS-------------------------EKKRAYFVDLFVRVSNTVAITMYKRLGY 126 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~-------------------------~~~g~~~i~~~~~~~n~~~~~~y~k~Gf 126 (175)
|..|+|+|++|++|+|+++++.+.+++ +..++..+-..- .-+..-.+||.|+||
T Consensus 93 IvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSF-G~t~~Ll~FW~k~gf 171 (196)
T PF13718_consen 93 IVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSF-GATPELLKFWQKNGF 171 (196)
T ss_dssp EEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEE-E--HHHHHHHHCTT-
T ss_pred EEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEecc-CCCHHHHHHHHHCCc
Confidence 889999999999999999999999999 356777655433 345788999999999
Q ss_pred EEEEEEEeecc-CCCCcceeEEEeccc
Q psy13682 127 IVYRTVLEYYS-GSPDEDAYDMRKALS 152 (175)
Q Consensus 127 ~~~~~~~~~~~-~~~~~~~~~m~~~l~ 152 (175)
++...-...-. .| +...+|.+.|+
T Consensus 172 ~pv~l~~~~n~~SG--e~S~imlr~ls 196 (196)
T PF13718_consen 172 VPVYLGQTRNEASG--EHSAIMLRPLS 196 (196)
T ss_dssp EEEEE-SS--TTT-----EEEEEEE--
T ss_pred EEEEEecCcccccC--ceeeeEEeecC
Confidence 99876432211 22 67888887663
No 62
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.18 E-value=1.2e-10 Score=67.11 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=66.0
Q ss_pred cCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcE
Q psy13682 48 SPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYI 127 (175)
Q Consensus 48 ~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~ 127 (175)
+.+|.+|.+..... .+++...++.|+|||||+.+.++....+.+.+.|+. ++..|..+|..++++..++||.
T Consensus 5 gpeG~PVSW~lmdq-------tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 5 GPEGNPVSWSLMDQ-------TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCCCEeEEEEecc-------cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCe
Confidence 44789998877543 467888999999999999999999999999999998 6889999999999999999998
Q ss_pred EE
Q psy13682 128 VY 129 (175)
Q Consensus 128 ~~ 129 (175)
..
T Consensus 77 ~~ 78 (89)
T PF08444_consen 77 FM 78 (89)
T ss_pred ec
Confidence 75
No 63
>KOG4144|consensus
Probab=99.17 E-value=5.4e-11 Score=74.59 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=91.8
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccC--hHHHHHHHhcCCcEEEEEE--------cCCCcEEEEEEeEeeCCC-----
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYG--LSFYMQYLAHWPEYFQVAE--------SPTGEIMGYIMGKAEGHG----- 65 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~--------~~~~~ivG~~~~~~~~~~----- 65 (175)
|+.|||.-++|..++..|....|++... .+.....+..-++.+.... ...+.+||++.....+..
T Consensus 11 ~~~irp~i~e~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~lt~E 90 (190)
T KOG4144|consen 11 APRIRPGIPESCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERLTQE 90 (190)
T ss_pred cccCCCCChHHHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhhhHH
Confidence 4679999999999999999998875432 3333344443333221111 116889999887665532
Q ss_pred -------CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHc-CccEEEEEEEecCHHHHHHHHhcCcEEEEEEEe
Q psy13682 66 -------DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKK-RAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134 (175)
Q Consensus 66 -------~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (175)
.+....|+.++|+|+||.+|+|+.|+...++..-++ -.+++.+.+ ..+-+.||++.||+..+....
T Consensus 91 Sm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~---h~pLvPFYEr~gFk~vgp~~~ 164 (190)
T KOG4144|consen 91 SMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALIC---HDPLVPFYERFGFKAVGPCAI 164 (190)
T ss_pred HHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeee---cCCccchhHhcCceeeccccc
Confidence 333578999999999999999999998877776654 344555533 367799999999999987443
No 64
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.15 E-value=7.7e-10 Score=84.35 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCcEEEEEEeEeeCCC-----CeeEEEEEEEE-----------ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEec
Q psy13682 50 TGEIMGYIMGKAEGHG-----DKWHGHVTALT-----------VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVS 113 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~-----~~~~~~i~~~~-----------V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 113 (175)
++.+||++.+...... ....+.|..+. ++++|||+|+|++|++++++.+++.|+..+.+ .+
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v---~s 498 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILV---IS 498 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEE---ee
Confidence 4689999998876531 11134454444 35899999999999999999999999999887 34
Q ss_pred CHHHHHHHHhcCcEEEEE
Q psy13682 114 NTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 114 n~~~~~~y~k~Gf~~~~~ 131 (175)
|..+++||+|+||+..+.
T Consensus 499 ~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 499 GIGVREYYRKLGYELDGP 516 (522)
T ss_pred CchHHHHHHHCCCEEEcc
Confidence 789999999999998754
No 65
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.10 E-value=1.7e-09 Score=59.05 Aligned_cols=62 Identities=31% Similarity=0.460 Sum_probs=52.2
Q ss_pred EEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEE
Q psy13682 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDL 108 (175)
Q Consensus 45 v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~ 108 (175)
++.. +++++|++.+..... ....+++..++|+|++||+|+|++++..+.+++.+.|.+.+.+
T Consensus 3 ~~~~-~~~~ig~~~~~~~~~-~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAED-DGEIVGFASLSPDGS-GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEec-CCEEEEEEEEEecCC-CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3444 789999999988764 2236788889999999999999999999999999988888765
No 66
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.99 E-value=1.9e-08 Score=61.79 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccCh
Q psy13682 7 FTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGI 86 (175)
Q Consensus 7 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gi 86 (175)
+++.|.-.+..++ .....+.+...+. .....+.+.. +++++|.+.+..... .+.+..+.|++--|++|+
T Consensus 10 ls~Qd~iDL~KIw-----p~~~~~~l~~~l~-~~~~l~aArF-NdRlLgAv~v~~~~~----~~~L~~l~VRevTRrRGV 78 (128)
T PF12568_consen 10 LSEQDRIDLAKIW-----PQQDPEQLEQWLD-EGHRLFAARF-NDRLLGAVKVTISGQ----QAELSDLCVREVTRRRGV 78 (128)
T ss_dssp --HHHHHHHHHH------TTS-----------SSEEEEEEEE-TTEEEEEEEEEEETT----EEEEEEEEE-TT-SSSSH
T ss_pred CCHHHHHHHHHhC-----CCCCHHHHHHHhc-cCCeEEEEEe-chheeeeEEEEEcCc----ceEEeeEEEeeccccccH
Confidence 3455666677776 2223344444443 3567888888 999999999988765 588999999999999999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEe----cCHHHHHHHHhcCcEEE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRV----SNTVAITMYKRLGYIVY 129 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~----~n~~~~~~y~k~Gf~~~ 129 (175)
|..|++.+.+.+ .++....+.... +-.....|...+||...
T Consensus 79 G~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 79 GLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp HHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred HHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 999999998887 456666664321 22456789999999653
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.99 E-value=1.4e-08 Score=58.03 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=53.4
Q ss_pred EEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 45 v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
.+.. +|+.+|++.+..... ...+....|.|++||+|+|+.|++.++++++++|.+-+ +..+-+.++++++
T Consensus 3 ~~~~-~g~~~a~l~Y~~~~~----~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~-----p~C~y~~~~~~~h 72 (78)
T PF14542_consen 3 ELKD-DGEEIAELTYREDGG----VIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV-----PTCSYVAKYFRRH 72 (78)
T ss_dssp EEES-STTEEEEEEEEESSS----EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE-----ETSHHHHHHHHH-
T ss_pred EEEE-CCEEEEEEEEEeCCC----EEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE-----EECHHHHHHHHhC
Confidence 3444 688999999976322 67788999999999999999999999999999887632 4446667777664
No 68
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.96 E-value=3.3e-08 Score=77.62 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=85.1
Q ss_pred hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC---------------------------------CeeEEEEEEE
Q psy13682 29 LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG---------------------------------DKWHGHVTAL 75 (175)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~---------------------------------~~~~~~i~~~ 75 (175)
+.+....+......++++...++.+|+.+.+...... ....+.|..|
T Consensus 458 P~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRI 537 (758)
T COG1444 458 PNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRI 537 (758)
T ss_pred HHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEE
Confidence 3344444444455667776645588877776544321 1114568899
Q ss_pred EECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccc
Q psy13682 76 TVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSR 153 (175)
Q Consensus 76 ~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (175)
+|+|++|++|||+++++.+.++++ .|+.-+-.. ...++.-.+||.|+||.+.+..+..-...+ ....+|.+.|+.
T Consensus 538 AvhPe~q~~GiGsrlL~~l~~~a~-~~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~SG-eys~i~lkpLs~ 612 (758)
T COG1444 538 AVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASSG-EYTAIVLKPLSD 612 (758)
T ss_pred EeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCCC-ceeEEEEecCCH
Confidence 999999999999999999999997 456654432 245588999999999999987654433211 778899998875
No 69
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.6e-07 Score=61.92 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=108.7
Q ss_pred eEEeeCC-cccHHHHHhcccCccccccC---hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 2 TTLRAFT-CDDMFKFNNVNLDPLTETYG---LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 2 ~~ir~~~-~~d~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
+.+|.++ +.+++.+.++...+|..... .......+....+..+-+...+|++||.....+.........+-+.++|
T Consensus 3 vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV 82 (266)
T COG3375 3 VVVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGV 82 (266)
T ss_pred eeEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhc
Confidence 4556664 66888888988888864332 2223335555566777777767799999998884433333456678999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHH-HHHhcCcEEEEEEEeeccCCC-------CcceeEEEe
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAIT-MYKRLGYIVYRTVLEYYSGSP-------DEDAYDMRK 149 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~-~y~k~Gf~~~~~~~~~~~~~~-------~~~~~~m~~ 149 (175)
.|++++.|+|-+|-..--+++.++|++.+..+-++-|..-.. -..|+|-.....+++||..-. ..|.++-+.
T Consensus 83 ~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~m~dgINrGm~sDRlVaeW 162 (266)
T COG3375 83 REEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGEMADGINRGMRSDRLVAEW 162 (266)
T ss_pred cccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccchhchhhcccccccceEEEE
Confidence 999999999999999999999999999988877766653333 356889888888888887321 236677777
Q ss_pred ccc
Q psy13682 150 ALS 152 (175)
Q Consensus 150 ~l~ 152 (175)
.|.
T Consensus 163 wl~ 165 (266)
T COG3375 163 WLN 165 (266)
T ss_pred ecC
Confidence 666
No 70
>KOG4135|consensus
Probab=98.83 E-value=9e-08 Score=59.94 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=65.4
Q ss_pred cEEEEEEeEeeCCCC-------eeEEEEEEEEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHh
Q psy13682 52 EIMGYIMGKAEGHGD-------KWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKR 123 (175)
Q Consensus 52 ~ivG~~~~~~~~~~~-------~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k 123 (175)
.+||=..+.....++ ...+++.-+.--|..||+|+|++++..++.|+.. .+..+..+.+..+|.+++++|+|
T Consensus 83 ~MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk 162 (185)
T KOG4135|consen 83 HMVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK 162 (185)
T ss_pred hhccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH
Confidence 367776666554432 3355665566689999999999999999999987 58888899999999999999999
Q ss_pred cCcEEEEEE
Q psy13682 124 LGYIVYRTV 132 (175)
Q Consensus 124 ~Gf~~~~~~ 132 (175)
++|+.....
T Consensus 163 ~~f~q~~~n 171 (185)
T KOG4135|consen 163 FLFTQVFYN 171 (185)
T ss_pred hhheeeeee
Confidence 999998763
No 71
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.82 E-value=4.1e-08 Score=60.13 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=88.0
Q ss_pred eEEeeCCcccHHHHHhcccCccc-cccC-hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeC----CC--------Ce
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLT-ETYG-LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEG----HG--------DK 67 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~----~~--------~~ 67 (175)
+.++-....|.+.++.+.++.-- -.|- .+.....+.+ .+++.. +|.+-|++...... .+ -.
T Consensus 8 ~~~~D~~apd~aavLaLNNeha~elswLe~erL~~l~~e----AF~ArR-~G~l~afl~tFd~~a~ydSpNFlWFrErYe 82 (167)
T COG3818 8 ILIRDVRAPDLAAVLALNNEHALELSWLELERLYRLYKE----AFVARR-DGNLAAFLVTFDSSARYDSPNFLWFRERYE 82 (167)
T ss_pred eehhhhcCCchhhHHhccchhhhhccccCHHHHHHHHHH----HHHHhh-ccchhhheeeccccccCCCCceeehhhhCC
Confidence 45677777799999998766422 2232 2332222222 135554 55555554432222 11 11
Q ss_pred eEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEE--EecCHHHHHHHHhcCcEEEEEEE
Q psy13682 68 WHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV--RVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 68 ~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~--~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
...++..+.|....||+|+|+++...+.++++..|...+.+.| ++.|++|-.|-..+||...|...
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 2467889999999999999999999999999999988877765 46889999999999999998754
No 72
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.69 E-value=1.3e-07 Score=56.00 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=54.3
Q ss_pred CcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEE
Q psy13682 40 PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDL 108 (175)
Q Consensus 40 ~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~ 108 (175)
.+..++... +|..+|.+.......+ ...|..-+|.+++||||+|+.|+.++++.+++.|.+.+=+
T Consensus 14 ~~~~y~~~~-~G~~~~e~~y~~~~~~---~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 14 ENGRYVLTD-EGEVIGEATYYDRGEN---LIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred CceEEEEec-CCcEEEEEEEecCCCC---EEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 345566665 8989999999888765 6778889999999999999999999999999988865444
No 73
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.62 E-value=6e-07 Score=62.63 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=69.3
Q ss_pred cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHH
Q psy13682 41 EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITM 120 (175)
Q Consensus 41 ~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 120 (175)
+.+..+..+++++|++.++.- ..|..++|++.+||-|++-+++.+++..+.++|..++++.+. +...++
T Consensus 36 e~~v~~~~~~~~iiacGsiaG--------nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTK---p~~~~l 104 (352)
T COG3053 36 EYFVAIYRDNEEIIACGSIAG--------NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTK---PEYAAL 104 (352)
T ss_pred eEEEEEEcCCCcEEEeccccc--------ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEec---hhHHHH
Confidence 455666665699999987643 236789999999999999999999999999999999999877 455899
Q ss_pred HHhcCcEEEEEEEe
Q psy13682 121 YKRLGYIVYRTVLE 134 (175)
Q Consensus 121 y~k~Gf~~~~~~~~ 134 (175)
|+.+||..+....+
T Consensus 105 Fk~~GF~~i~~~~~ 118 (352)
T COG3053 105 FKQCGFSEIASAEN 118 (352)
T ss_pred HHhCCceEeeccCc
Confidence 99999999877543
No 74
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.53 E-value=3.8e-07 Score=65.19 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=67.2
Q ss_pred EEEEEEcCCCcEEEEEEeEeeC----CCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHH
Q psy13682 42 YFQVAESPTGEIMGYIMGKAEG----HGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVA 117 (175)
Q Consensus 42 ~~~v~~~~~~~ivG~~~~~~~~----~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~ 117 (175)
..++... +.++++.+...+.. ......+.|.++++.|.|||+|+.++|+.+.++...+.|+....+. +.+
T Consensus 40 n~~vi~~-nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-----P~s 113 (389)
T COG4552 40 NSYVIYM-NQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-----PFS 113 (389)
T ss_pred cceEEee-hhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-----cCc
Confidence 3455555 67777776655332 2244467788999999999999999999999999999999877764 567
Q ss_pred HHHHHhcCcEEEEEEE
Q psy13682 118 ITMYKRLGYIVYRTVL 133 (175)
Q Consensus 118 ~~~y~k~Gf~~~~~~~ 133 (175)
.++|+|.||.......
T Consensus 114 ~~iYrKfGye~asn~~ 129 (389)
T COG4552 114 GGIYRKFGYEYASNYH 129 (389)
T ss_pred hhhHhhccccccceEE
Confidence 9999999999987643
No 75
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.43 E-value=1.9e-06 Score=62.20 Aligned_cols=93 Identities=20% Similarity=0.118 Sum_probs=55.7
Q ss_pred CeEEeeCCcccHHHHHhcccCccc----cccChHHHHHH-------Hhc-------CCcEEEEEEc-CCCcEEEEEEeEe
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLT----ETYGLSFYMQY-------LAH-------WPEYFQVAES-PTGEIMGYIMGKA 61 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~----~~~~~~~~~~~-------~~~-------~~~~~~v~~~-~~~~ivG~~~~~~ 61 (175)
|+.|||++.+|+++|.+|....-. -+.+.+...+. +.. ...+.+|.++ +.|++||++.+..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 899999999999999998655421 12333322222 211 1235677775 3599999998765
Q ss_pred eCCC---------------------------------CeeEEEEEEEEECcchhccChHHHHHHH
Q psy13682 62 EGHG---------------------------------DKWHGHVTALTVAPDYRRLGIAAELMSW 93 (175)
Q Consensus 62 ~~~~---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~~ 93 (175)
.-.. -....++.+++++|+||+.|.|+.|-+.
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~ 145 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRS 145 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHH
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHH
Confidence 4321 1115578899999999999999988654
No 76
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.39 E-value=3.6e-06 Score=60.72 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=62.3
Q ss_pred CeEEeeCCcccHHHHHhcccCcc---c-cccChHHHHHHHh------------cCCcEEEEEEc-CCCcEEEEEEeEeeC
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPL---T-ETYGLSFYMQYLA------------HWPEYFQVAES-PTGEIMGYIMGKAEG 63 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~---~-~~~~~~~~~~~~~------------~~~~~~~v~~~-~~~~ivG~~~~~~~~ 63 (175)
||.|||++.+|++.|.+|....- . -+.+.+...+.+. ....+.+|.++ +.|++||++.+...-
T Consensus 1 M~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 80 (344)
T PRK10456 1 MMVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAV 80 (344)
T ss_pred CeEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecc
Confidence 89999999999999999975542 1 1333333332221 12346677775 358999999875533
Q ss_pred CC---------------------------------CeeEEEEEEEEECcchhccChHHHHHH
Q psy13682 64 HG---------------------------------DKWHGHVTALTVAPDYRRLGIAAELMS 92 (175)
Q Consensus 64 ~~---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~ 92 (175)
.. -....++.+++++|+||+.|.|+.|-+
T Consensus 81 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr 142 (344)
T PRK10456 81 GLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSK 142 (344)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHH
Confidence 21 111456889999999999999987754
No 77
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.25 E-value=3.6e-05 Score=46.69 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=55.8
Q ss_pred CCcEEEEEEeEeeCCC-CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 50 TGEIMGYIMGKAEGHG-DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~-~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
+|.+||++.+...... ......+..+++...|||+|+|++..+.+....+ |. ..+-+...|.+|++|+++.-.+.
T Consensus 45 ~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~--w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 45 GGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GV--WQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred CCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ce--EEEEEeccCChhHHHHHhhhccc
Confidence 7999999987554432 1223446788999999999999999998876654 22 33456689999999999976654
No 78
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.23 E-value=2.8e-06 Score=51.99 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=40.8
Q ss_pred EEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCc
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf 126 (175)
++|+|++||+|+|+.|++.+++++...|+. .|..+..++.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999987665 67889999999999
No 79
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.15 E-value=0.00012 Score=48.82 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=79.0
Q ss_pred CcccHHHHHhcccCcccc--ccChH----HHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC----------------
Q psy13682 8 TCDDMFKFNNVNLDPLTE--TYGLS----FYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG---------------- 65 (175)
Q Consensus 8 ~~~d~~~l~~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~---------------- 65 (175)
+.++++++..+....|.+ .|... .-.+.+......++++.+ +|+++|++.+.+...+
T Consensus 6 ~~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~ 84 (182)
T PF00765_consen 6 SRRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPA 84 (182)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCC
Confidence 345566777766555432 33322 112333333445666666 6999999999887653
Q ss_pred --CeeEEEEEEEEECcchhc------cChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 66 --DKWHGHVTALTVAPDYRR------LGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 66 --~~~~~~i~~~~V~~~~rg------~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
....+++..++|+++.++ .-+...|+..+.+++.++|++.+..-+. ....+++.+.||.....
T Consensus 85 p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~---~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 85 PRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVD---PAMERILRRAGWPVRRL 155 (182)
T ss_dssp -SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEE---HHHHHHHHHCT-EEEES
T ss_pred CCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEC---hHHHHHHHHcCCceEEC
Confidence 234678889999988532 1356789999999999999999887544 78899999999987644
No 80
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.13 E-value=1.6e-05 Score=59.42 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=94.2
Q ss_pred eEEeeCCcccHHHHHhcccCc-----cccccChHHHHHHHhcCCcEEEEE-Ec---CCCcEEEEEEeEeeCCCCeeEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP-----LTETYGLSFYMQYLAHWPEYFQVA-ES---PTGEIMGYIMGKAEGHGDKWHGHV 72 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~-~~---~~~~ivG~~~~~~~~~~~~~~~~i 72 (175)
+++++....+++.+.+|-... ....+.++...+.........+-+ .. .|+-+||+..+..... .+.|
T Consensus 414 l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~~----~w~I 489 (574)
T COG3882 414 LTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKES----EWFI 489 (574)
T ss_pred EEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecCC----eEEh
Confidence 678888999999999885432 234566777777554433332222 21 2577899998887664 4677
Q ss_pred EEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEE--ecCHHHHHHHHhcCcEEEEE
Q psy13682 73 TALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVR--VSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 73 ~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~--~~n~~~~~~y~k~Gf~~~~~ 131 (175)
..+.....--|+++-++|+..+++.|...|...++.... .-|.....||+++||+..++
T Consensus 490 Dt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 490 DTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 777778888899999999999999999999998887644 47889999999999996553
No 81
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.06 E-value=0.0001 Score=50.29 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=78.2
Q ss_pred cccHHHHHhcccCcccc--ccChH----HHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC-----------------
Q psy13682 9 CDDMFKFNNVNLDPLTE--TYGLS----FYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG----------------- 65 (175)
Q Consensus 9 ~~d~~~l~~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~----------------- 65 (175)
.++++++.++....|.+ .|... .-.+.+......++++..++|+++|++.+.+...+
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 45566677776555432 23221 11122333344556666557899999988655321
Q ss_pred -CeeEEEEEEEEECcchhcc---C----hHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 66 -DKWHGHVTALTVAPDYRRL---G----IAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 66 -~~~~~~i~~~~V~~~~rg~---G----ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
....+++..++|+++++.. + +...|+..+.+++..+|++.++..+ ++...+++.++||...
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~---~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTAT---DLRFERILARAGWPMQ 163 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEE---CHHHHHHHHHcCCCeE
Confidence 2347789999999985322 2 5567899999999999999987744 3677889999999774
No 82
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.05 E-value=0.00062 Score=45.17 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=74.0
Q ss_pred eCCcccHHHHHhcccCccccccChHHHHHHHhcCCc-E--EEEEEcCCCcEEEEEEeEeeCC----CCeeEEEEEEEEEC
Q psy13682 6 AFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPE-Y--FQVAESPTGEIMGYIMGKAEGH----GDKWHGHVTALTVA 78 (175)
Q Consensus 6 ~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~~~~ivG~~~~~~~~~----~~~~~~~i~~~~V~ 78 (175)
-...+-++++..+.... ...+....+..+....+. . .+++.....++|+...+..... .......++..+++
T Consensus 9 NP~~e~~d~fmk~~g~~-r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~ 87 (181)
T PF06852_consen 9 NPPQEYFDQFMKLHGNE-RWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWID 87 (181)
T ss_pred CCCHHHHHHHHHHhcCC-cccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeC
Confidence 34556678888776552 233445555555554444 3 3444544577888888755432 13446789999999
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHH-hcCcEEEEE
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~ 131 (175)
|+|||+|+++.+-..+.+..+..+-. ..+ ..+..+.++|. -+||...+.
T Consensus 88 p~yRg~~~~kl~~~~~~~~~~~~~~N-~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 88 PEYRGKGIMKLQDDICMDELDSVDDN-SVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CcccCcchHHHHHHHHHHHhccCCCc-eee---ecCHHHHHHHHHHhCCCCCcc
Confidence 99999999974445455555443332 223 34456666666 578877766
No 83
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.97 E-value=0.00052 Score=43.55 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=69.0
Q ss_pred CcccHHHHHhcccCcc-------ccccChHHHHHHHhcC---C-cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEE
Q psy13682 8 TCDDMFKFNNVNLDPL-------TETYGLSFYMQYLAHW---P-EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALT 76 (175)
Q Consensus 8 ~~~d~~~l~~l~~~~~-------~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~ 76 (175)
.++|++.+.++....+ ..+....++.+.+... . -..+++.. +|++||++....... ..+.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~g~~va~~~~~~~~~----~~~~~~~g 101 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYD-GGEPVAFALGFRHGG----TLYYWYGG 101 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEE-CCEEEEEEEEEEECC----EEEEEEEE
Confidence 4667777777653322 2234455555544432 2 24455555 899999987766554 45666788
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~ 110 (175)
++|+++..+.|..|+..+++++.+.|++.+-+..
T Consensus 102 ~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 102 YDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred ECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 8999999999999999999999999998877653
No 84
>KOG3698|consensus
Probab=97.96 E-value=8.2e-05 Score=56.87 Aligned_cols=141 Identities=13% Similarity=0.041 Sum_probs=97.3
Q ss_pred eEEeeCCcccHHHHHhcccCcccc-----ccC--hHH-----HHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCee-
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTE-----TYG--LSF-----YMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKW- 68 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~-----~~~--~~~-----~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~- 68 (175)
..|||.+..|-+.+..++..-+.+ ++. ... .--.+......+.++.++++++|||++.......-..
T Consensus 680 y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~rn 759 (891)
T KOG3698|consen 680 YDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFSRN 759 (891)
T ss_pred EeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhhhc
Confidence 578999999999888876554421 111 111 2222333456788888878889999987653321000
Q ss_pred ---------------------------------------------------------EEEEEEEEECcchhccChHHHHH
Q psy13682 69 ---------------------------------------------------------HGHVTALTVAPDYRRLGIAAELM 91 (175)
Q Consensus 69 ---------------------------------------------------------~~~i~~~~V~~~~rg~Gig~~ll 91 (175)
-+++ ..+++.+.-.-|+.++|+
T Consensus 760 ~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v-~~~~~~~a~D~~~~k~m~ 838 (891)
T KOG3698|consen 760 FLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWV-ETYFGMDASDAHPMKKMI 838 (891)
T ss_pred eeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHH-hhccccccccchHHHHHH
Confidence 0011 134455555778999999
Q ss_pred HHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEec
Q psy13682 92 SWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKA 150 (175)
Q Consensus 92 ~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~ 150 (175)
.-++..++..|.+..++.|..++.+-++||.++||...+.... .+.++|.+.
T Consensus 839 ~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~-------~~~~i~Gr~ 890 (891)
T KOG3698|consen 839 QVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSEC-------QRFRIFGRT 890 (891)
T ss_pred HHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhhc-------ceEEEeccc
Confidence 9999999999999999999999999999999999998776432 456666554
No 85
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=0.00085 Score=45.07 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=89.5
Q ss_pred CcccHHHHHhcccCcccc--ccC----hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC----------------
Q psy13682 8 TCDDMFKFNNVNLDPLTE--TYG----LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG---------------- 65 (175)
Q Consensus 8 ~~~d~~~l~~l~~~~~~~--~~~----~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~---------------- 65 (175)
.++-++++..+....|.+ .|. ...-.+.+.+....++++...+|+++|++.+-+...+
T Consensus 13 ~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~ 92 (209)
T COG3916 13 FPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPP 92 (209)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCC
Confidence 344466666665554432 222 2222344444455666775669999999998776543
Q ss_pred --CeeEEEEEEEEECc--chhccC----hHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc
Q psy13682 66 --DKWHGHVTALTVAP--DYRRLG----IAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS 137 (175)
Q Consensus 66 --~~~~~~i~~~~V~~--~~rg~G----ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 137 (175)
.....+...++|+. .-++.| ++..|+.-+++++.+.|++.|...+ .....+.+++.||.....-+...-
T Consensus 93 P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt---~~~meril~r~Gw~~~riG~~~~i 169 (209)
T COG3916 93 PSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVT---DTGMERILRRAGWPLTRIGPPLTI 169 (209)
T ss_pred CCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEE---chHHHHHHHHcCCCeEEcCCceee
Confidence 22356777888876 333322 3668889999999999999988744 478999999999987654222211
Q ss_pred CCCCcceeEEEeccccc
Q psy13682 138 GSPDEDAYDMRKALSRD 154 (175)
Q Consensus 138 ~~~~~~~~~m~~~l~~~ 154 (175)
++ ...+....+++++
T Consensus 170 g~--~~~VA~~l~i~~~ 184 (209)
T COG3916 170 GN--ERAVALLLDIDRE 184 (209)
T ss_pred CC--eeEEEEEeecCHH
Confidence 22 4555555555543
No 86
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.83 E-value=0.00014 Score=52.53 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=59.7
Q ss_pred EEeeCCcccHHHHHhcccCcc---c-cccChHHHHHHHh------------cCCcEEEEEEc-CCCcEEEEEEeEeeCCC
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPL---T-ETYGLSFYMQYLA------------HWPEYFQVAES-PTGEIMGYIMGKAEGHG 65 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~---~-~~~~~~~~~~~~~------------~~~~~~~v~~~-~~~~ivG~~~~~~~~~~ 65 (175)
.|||++.+|++.|.+|....- . -+.+.+...+.+. ....+.+|.++ +.|++||++.+...-..
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 80 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGL 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 379999999999999975542 1 1333333332221 11346677775 35899999987553321
Q ss_pred ---------------------------------CeeEEEEEEEEECcchhccChHHHHHH
Q psy13682 66 ---------------------------------DKWHGHVTALTVAPDYRRLGIAAELMS 92 (175)
Q Consensus 66 ---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~ 92 (175)
-....++.+++++|+||+.|.|+.|-+
T Consensus 81 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 81 EEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred CCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 111457889999999999999987754
No 87
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.80 E-value=0.0002 Score=51.74 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=59.1
Q ss_pred EEeeCCcccHHHHHhcccCcc---c-cccChHHHHHH-------H----h--cCCcEEEEEEc-CCCcEEEEEEeEeeCC
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPL---T-ETYGLSFYMQY-------L----A--HWPEYFQVAES-PTGEIMGYIMGKAEGH 64 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~---~-~~~~~~~~~~~-------~----~--~~~~~~~v~~~-~~~~ivG~~~~~~~~~ 64 (175)
.|||++.+|++.|.+|....- . -+.+.+...+. + . ....+.+|.++ +.|++||++.+...-.
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG 80 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAG 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 379999999999999965542 1 12233222222 1 1 12346677775 3589999998755332
Q ss_pred C---------------------------------CeeEEEEEEEEECcchhccChHHHHHH
Q psy13682 65 G---------------------------------DKWHGHVTALTVAPDYRRLGIAAELMS 92 (175)
Q Consensus 65 ~---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~ 92 (175)
. -....++.+++++|+||+.|.|+.|-+
T Consensus 81 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr 141 (336)
T TIGR03245 81 YGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSR 141 (336)
T ss_pred CCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHH
Confidence 1 111557889999999999999987754
No 88
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.78 E-value=0.00031 Score=49.10 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=78.4
Q ss_pred EEeeCC-cccHHHHHhcccCcccc--ccC------hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeC---C------
Q psy13682 3 TLRAFT-CDDMFKFNNVNLDPLTE--TYG------LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEG---H------ 64 (175)
Q Consensus 3 ~ir~~~-~~d~~~l~~l~~~~~~~--~~~------~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~---~------ 64 (175)
.++.+. .++++++..+..+.|.+ .|. ...-.+........+++...++|++||++.+.+.. .
T Consensus 9 ~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~ 88 (241)
T TIGR03694 9 EIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPF 88 (241)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccH
Confidence 344443 34567777776554422 222 11111122222333343333358999999987631 0
Q ss_pred ------------------CCeeEEEEEEEEECcchhcc--------C--------------------hHHHHHHHHHHHH
Q psy13682 65 ------------------GDKWHGHVTALTVAPDYRRL--------G--------------------IAAELMSWLEDIS 98 (175)
Q Consensus 65 ------------------~~~~~~~i~~~~V~~~~rg~--------G--------------------ig~~ll~~~~~~~ 98 (175)
.....+++..++|++++|++ | +...|+..+.+++
T Consensus 89 e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a 168 (241)
T TIGR03694 89 EKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALS 168 (241)
T ss_pred HHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHH
Confidence 01246788899999999974 2 4567899999999
Q ss_pred HHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 99 EKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 99 ~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.++|++.++..+ .+...+++.+.|+...
T Consensus 169 ~~~Gi~~~~~v~---~~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 169 SANGITHWYAIM---EPRLARLLSRFGIQFR 196 (241)
T ss_pred HHCCCcEEEEEe---CHHHHHHHHHhCCceE
Confidence 999999987744 3678889999998664
No 89
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.74 E-value=0.00026 Score=51.14 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=58.8
Q ss_pred EEeeCCcccHHHHHhcccCcc---c-cccChHHHHHH-------H---h--cCCcEEEEEEc-CCCcEEEEEEeEeeCCC
Q psy13682 3 TLRAFTCDDMFKFNNVNLDPL---T-ETYGLSFYMQY-------L---A--HWPEYFQVAES-PTGEIMGYIMGKAEGHG 65 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~l~~~~~---~-~~~~~~~~~~~-------~---~--~~~~~~~v~~~-~~~~ivG~~~~~~~~~~ 65 (175)
.|||++.+|++.|.+|....- . -+.+.+...+. + . ....+.+|.++ +.|++||++.+...-..
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~ 80 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGL 80 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 379999999999999965542 1 12222222211 1 1 12345667775 35899999987553321
Q ss_pred ---------------------------------CeeEEEEEEEEECcchhccChHHHHHH
Q psy13682 66 ---------------------------------DKWHGHVTALTVAPDYRRLGIAAELMS 92 (175)
Q Consensus 66 ---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~ 92 (175)
-....++.+++++|+||+.|.|+.|-+
T Consensus 81 ~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr 140 (335)
T TIGR03243 81 DEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSR 140 (335)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHH
Confidence 111557889999999999999987754
No 90
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00018 Score=50.37 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=58.6
Q ss_pred CeEEeeCCcccHHHHHhcccCcc----ccccChHHHHHHHh-----------c-CCcEEEEEEc-CCCcEEEEEEeEeeC
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPL----TETYGLSFYMQYLA-----------H-WPEYFQVAES-PTGEIMGYIMGKAEG 63 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~----~~~~~~~~~~~~~~-----------~-~~~~~~v~~~-~~~~ivG~~~~~~~~ 63 (175)
||.+||++..|++++.++....- .-|.+++....++. . ...+.++.++ +.|+++|.+.+...-
T Consensus 1 mlvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~v 80 (336)
T COG3138 1 MLVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAV 80 (336)
T ss_pred CcccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEee
Confidence 88999999999999999865541 12333333333321 1 1235666665 469999998764422
Q ss_pred CC---------------------------------CeeEEEEEEEEECcchhccChHHHHH
Q psy13682 64 HG---------------------------------DKWHGHVTALTVAPDYRRLGIAAELM 91 (175)
Q Consensus 64 ~~---------------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll 91 (175)
.- .....++..++++|++|.-|.|+.|-
T Consensus 81 Gl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Lls 141 (336)
T COG3138 81 GLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLS 141 (336)
T ss_pred ccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhh
Confidence 10 11134567899999999888887554
No 91
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.62 E-value=0.00032 Score=49.87 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEeccccc
Q psy13682 85 GIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRD 154 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~~ 154 (175)
|-...++..+.+.|+++|+.+|++.+... ....|++.||...+.++.||.+ .+.+.|.+.++..
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f~g---~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYFNG---HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEecccccCC---CceEEEEEcCchH
Confidence 45788999999999999999999988755 4899999999999999999976 5789999999864
No 92
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.59 E-value=0.0038 Score=40.30 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=62.0
Q ss_pred cccHHHHHhcccCccc--------cccChHHHHHHHhcCCc-----EEEEEEcCCCcEEEEEEeEeeCC----CCeeEEE
Q psy13682 9 CDDMFKFNNVNLDPLT--------ETYGLSFYMQYLAHWPE-----YFQVAESPTGEIMGYIMGKAEGH----GDKWHGH 71 (175)
Q Consensus 9 ~~d~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~ivG~~~~~~~~~----~~~~~~~ 71 (175)
+++++++.++..+.+- -.|+.+++.-.+.. ++ ...+-....+++|||++.-+..- ......+
T Consensus 34 ~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~p-Pg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~e 112 (162)
T PF01233_consen 34 DEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKP-PGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVE 112 (162)
T ss_dssp HHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTS-TT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeC-cCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeee
Confidence 3455666666544442 24555555555543 33 22222344799999999766542 2445778
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHHHHcCccE
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDISEKKRAYF 105 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~ 105 (175)
|..++|+...|.++++--|++++...+-..|.-.
T Consensus 113 INFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 113 INFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 9999999999999999999999999998877543
No 93
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=97.58 E-value=0.0059 Score=38.43 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=70.9
Q ss_pred eEEeeCCcccHHHHHhcccCc----------cccc-----cCh-HHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCC
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDP----------LTET-----YGL-SFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHG 65 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~----------~~~~-----~~~-~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~ 65 (175)
|.+|++++.|++.+..+.... .++. .+. .--...+. ..+..+++.++++++.||+.......+
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~-RsgHSFvA~~e~~~~~GfvLAQaVWQG 79 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYE-RSGHSFVAEDEGGELQGFVLAQAVWQG 79 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHH-CCS--EEEE-ETTEEEEEEEEEEEE-S
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhh-ccCCcEEEEccCCceeeeeehhHHhcC
Confidence 678999999999999884332 1111 000 01122233 357889998558999999988777766
Q ss_pred CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEE
Q psy13682 66 DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYR 130 (175)
Q Consensus 66 ~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 130 (175)
+.....+..+.++|. +......-|+..+.+.+-..++..+.+...+ ....-.+..||...+
T Consensus 80 drptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 80 DRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAARAEGFRLGG 140 (161)
T ss_dssp SSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHHHHTT----S
T ss_pred CCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHHhhcccccCC
Confidence 666777777766554 4457777889999999999999998886654 556667788888665
No 94
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.54 E-value=0.00018 Score=39.79 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.5
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHH
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDIS 98 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~ 98 (175)
.+-|..++|+|.+|++|||++|++.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 456789999999999999999999887764
No 95
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.41 E-value=0.00025 Score=53.06 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=43.7
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
...||.+|+|++|++.+++.|++.+..+|.+ .+-..+...|.|+||+..|.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~v---iSgiG~ReYy~k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILV---ISGIGVREYYRKLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEE---EecccHHHHHHHhCccccCC
Confidence 4679999999999999999999988888776 33467899999999998753
No 96
>PHA00432 internal virion protein A
Probab=97.34 E-value=0.0073 Score=38.03 Aligned_cols=115 Identities=15% Similarity=0.017 Sum_probs=63.1
Q ss_pred eEEeeCCcccHHHHHhcccCccccccChHHHHHHH----hcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 2 TTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYL----AHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 2 ~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
|.|||++.+|++.+ .+..+ +..++...- -..+..++.+.. +|++++.++ .. ......+..-+|
T Consensus 1 m~I~paT~~di~~~-~lr~~------D~~E~~a~g~~~~~~~s~~~~~~~~-~G~~~aI~G----n~-G~~vW~v~T~~v 67 (137)
T PHA00432 1 MYIRQTTERDFDVF-NPSFE------DILEAKAYGIEPSFPPDSECVTLSL-DGFVLAIGG----NQ-GDQVWFVTSDQV 67 (137)
T ss_pred CccccccHHHHHHc-CCCHH------HHHHHHhcCCCCCCCCCceEEEEec-CCeEEEEec----CC-CCceEEEecHHh
Confidence 56899999999877 33222 111111100 011234444444 899988873 11 111122222222
Q ss_pred CcchhccChHHHHHHHHHHHHHH--cCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEK--KRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~--~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
..- -++.-+...+.+.++... ..+..++-.|...|..+++|.+.+||+....
T Consensus 68 ~~~--~~~~~reF~k~~~~~ld~ml~~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 68 WRL--TKKEKREFRKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhC--ChhhhHHHHHHHHHHHHHHHHhhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 110 012333344444444333 2477888889999999999999999999866
No 97
>KOG2036|consensus
Probab=97.32 E-value=0.0018 Score=51.17 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=57.1
Q ss_pred EEEEEEEECcchhccChHHHHHHHHHHHHHHcCcc-------------EE------------------------------
Q psy13682 70 GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAY-------------FV------------------------------ 106 (175)
Q Consensus 70 ~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~-------------~i------------------------------ 106 (175)
+.|..++|+|+|+++|+|++.++.+.++..-+... .+
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er~ 694 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSERP 694 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccCC
Confidence 46779999999999999999999999988532111 00
Q ss_pred -----EEEEE-ecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccccC
Q psy13682 107 -----DLFVR-VSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDV 155 (175)
Q Consensus 107 -----~~~~~-~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~~~ 155 (175)
++.+. .-...-.+||+++||.+.......-. -..+...+|-+.|..+.
T Consensus 695 perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~-lTGEHtcimLk~L~~~e 748 (1011)
T KOG2036|consen 695 PERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSND-LTGEHTCIMLKTLEGDE 748 (1011)
T ss_pred CcccceeeecccCCHHHHHHHHhcCceeEEeeccccc-cccceeEEEEecCCCcc
Confidence 00000 01245678999999999875432222 11278899999998543
No 98
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.29 E-value=0.0095 Score=43.76 Aligned_cols=123 Identities=10% Similarity=0.021 Sum_probs=81.7
Q ss_pred ccHHHHHhcccCcc---c-cccChHHHHHHHhcCC--cEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhc
Q psy13682 10 DDMFKFNNVNLDPL---T-ETYGLSFYMQYLAHWP--EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRR 83 (175)
Q Consensus 10 ~d~~~l~~l~~~~~---~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg 83 (175)
+|++.+.++..... . ...+.+++.+.....+ ...+++...+|++||.+.+....+ .......+.++++++
T Consensus 158 ~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~----~~~~~~~g~~~~~~~ 233 (330)
T TIGR03019 158 GDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRD----EVLPYYAGGLREARD 233 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCC----EEEEEeccChHHHHh
Confidence 45777776643321 1 2355666666554322 234555623889988876655433 222224556799999
Q ss_pred cChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeec
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYY 136 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~ 136 (175)
.+-+..|..++++++.++|++.+-+.....+....+|=++.||+.....-.|+
T Consensus 234 ~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~ 286 (330)
T TIGR03019 234 VAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYL 286 (330)
T ss_pred hChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEE
Confidence 99999999999999999999998886554455666777788999876654444
No 99
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=97.27 E-value=0.01 Score=37.23 Aligned_cols=95 Identities=11% Similarity=0.095 Sum_probs=66.2
Q ss_pred hHHHHHHHhcC-CcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEE
Q psy13682 29 LSFYMQYLAHW-PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVD 107 (175)
Q Consensus 29 ~~~~~~~~~~~-~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~ 107 (175)
...+...+... .+...+....+|++||++.+....+. ...+ -.+-+|++..+.+|+-.+-..+++|++.|.+.++
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~g---lSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDG---LSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccch---hhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 56666666543 33444444458999999998877664 2222 4556999999999999999999999999999999
Q ss_pred EEEEecCHHHHHHHHhcCcEEE
Q psy13682 108 LFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 108 ~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
+.-...+ ..++-=|..|++.
T Consensus 101 LGY~I~~--c~kM~YK~~f~P~ 120 (128)
T PF04377_consen 101 LGYWIHG--CPKMNYKARFRPH 120 (128)
T ss_pred eCeEeCC--CCcccchhcCCce
Confidence 8765544 2333334444443
No 100
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.12 E-value=0.019 Score=40.12 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=62.8
Q ss_pred cChHHHHHHHhcCCc-EEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccE
Q psy13682 27 YGLSFYMQYLAHWPE-YFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYF 105 (175)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~ 105 (175)
.+...+...+..... ...+....+|++||.+.+....+. ...+ ..+-+|++-.+++|+.++-.-++++++.|...
T Consensus 128 ~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~---lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y 203 (240)
T PRK01305 128 PSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDG---LSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPY 203 (240)
T ss_pred CCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCc---eeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCe
Confidence 345666677665432 233333348999999999887764 2223 56679999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13682 106 VDLFVRVSN 114 (175)
Q Consensus 106 i~~~~~~~n 114 (175)
+++.-...+
T Consensus 204 ~YLGY~I~~ 212 (240)
T PRK01305 204 VYLGYWIKG 212 (240)
T ss_pred EeeeEEECC
Confidence 999877655
No 101
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.12 E-value=0.0063 Score=37.26 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=37.7
Q ss_pred EEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 71 HVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 71 ~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
.+..++|++..|++|+|++|.+++++.- +..--.+.++...+...+|.+|+
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~~~a~DrPS~Kll~Fl~Kh 98 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPHQLAIDRPSPKLLSFLKKH 98 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHc---CCCcccceecCCcHHHHHHHHHh
Confidence 5678999999999999999999887653 33333344555666777777764
No 102
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=97.05 E-value=0.03 Score=34.82 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=81.1
Q ss_pred CeEEeeCCcccHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcc
Q psy13682 1 MTTLRAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPD 80 (175)
Q Consensus 1 m~~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~ 80 (175)
|++++|...-|+.+...--.+...-..+- +...-.++..++...+.+.+.|+..+...... ..+.+.+ -+|+
T Consensus 1 ~~~~~~~~~~~l~e~~~n~~~~~~~~nnG----d~Y~~K~~~~Y~gVyeg~~l~Gi~~v~~i~~~---~vecHa~-y~P~ 72 (151)
T PF11039_consen 1 MIQFKPTRNIDLIEAVGNHADIIAGSNNG----DGYDIKPDQLYLGVYEGGQLGGIVYVEEIQPS---VVECHAM-YDPG 72 (151)
T ss_pred CceeccCCcccHHHHhCCCcceeccccCC----cceeecCccEEEEEEeceEEEEEEEEEEEeee---eEEEEee-eccc
Confidence 67777776666555443222211100011 11111244556666657888898888776554 3444444 5899
Q ss_pred hhccChHHHHHHHHHHHHHHc-CccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCC
Q psy13682 81 YRRLGIAAELMSWLEDISEKK-RAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGS 139 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 139 (175)
+|| ++...-....+|+.+. .+..+...+....+..+-..+-+|.+..|.+.+++.+.
T Consensus 73 fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~id~~~~g~ 130 (151)
T PF11039_consen 73 FRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHIDDYFKGV 130 (151)
T ss_pred cch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeHHHHhcCC
Confidence 997 8887777777777763 56655555655666777888899999999999988643
No 103
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.92 E-value=0.0092 Score=35.66 Aligned_cols=60 Identities=13% Similarity=-0.010 Sum_probs=45.1
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCH
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNT 115 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 115 (175)
++...|++.+.+... .....++.-++|.+..||+|+|..++..+.+.. ..+...+..+|+
T Consensus 16 ~e~y~~~aIvt~~~~-~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~ 75 (99)
T cd04264 16 SEGYNAAAIVTYEGV-NNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNP 75 (99)
T ss_pred eCCceEEEEEeccCC-CCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc
Confidence 566778887766542 122689999999999999999999999887653 456676776664
No 104
>KOG2535|consensus
Probab=96.85 E-value=0.002 Score=46.71 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=40.2
Q ss_pred chhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 80 DYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 80 ~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
.||.||+|+.|+++++..+++ +|-..|.+.. .....+.|.|+||+..|.
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavIS---GVGtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVIS---GVGTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEe---ccchHHHHHhhCeeecCh
Confidence 599999999999999999997 5777766633 245689999999998753
No 105
>PHA01733 hypothetical protein
Probab=96.75 E-value=0.0041 Score=39.80 Aligned_cols=124 Identities=12% Similarity=-0.010 Sum_probs=67.8
Q ss_pred EEeeCCcccHHHHHh-cccCcccc----ccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE
Q psy13682 3 TLRAFTCDDMFKFNN-VNLDPLTE----TYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV 77 (175)
Q Consensus 3 ~ir~~~~~d~~~l~~-l~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V 77 (175)
.|||.+.+|+..+.. +..+...+ .-+.....-.+...........- +|+++|.++.........+..|+ +..
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~~p~~l~~~~~~s~~~v~~~~~-nG~l~aI~Gv~~d~~~~vG~pWl--V~T 80 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGHSPLALHLSLDVSENVVAFVAP-DGSLAGVAGLVEDMGNRVGEIWM--VCT 80 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCCCcccchhhhhccccceEEEec-CCcEEEEecccccccCCCCceeE--Eec
Confidence 478999999866555 32221100 00111111122222223233333 79999998877622222222332 322
Q ss_pred CcchhccChHHHHHHHHHHHHH-HcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISE-KKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+.=.+ +-...+++...... ...+..++-.|...|..+++|.+.+||+.....
T Consensus 81 ~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~ 133 (153)
T PHA01733 81 PAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYV 133 (153)
T ss_pred HHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeeccc
Confidence 22122 33444444444444 346777788899999999999999999998664
No 106
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.64 E-value=0.021 Score=38.12 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=35.0
Q ss_pred cEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 52 EIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 52 ~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
.+|||.+=...... ...+.-+.|.|.||++|+|+.|++.--+.++..|
T Consensus 66 h~vGyFSKEk~s~~---~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWD---NNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccC---CeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 58898876544433 2446678899999999999999998877777654
No 107
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.44 E-value=0.026 Score=33.75 Aligned_cols=58 Identities=12% Similarity=-0.062 Sum_probs=41.1
Q ss_pred CcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCH
Q psy13682 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNT 115 (175)
Q Consensus 51 ~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 115 (175)
+..=|++.+.+... ....+|.-++|.+..||+|+|..++..+.+.. ..+...+..+|+
T Consensus 18 e~y~~~aivt~~~~--~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~ 75 (99)
T cd04265 18 EGYNAAAIVTNEEV--DGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNP 75 (99)
T ss_pred CCCcEEEEEeccCC--CCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc
Confidence 34445555554431 12688999999999999999999999887664 346666766664
No 108
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=96.35 E-value=0.17 Score=34.04 Aligned_cols=126 Identities=15% Similarity=0.095 Sum_probs=77.9
Q ss_pred EeeCCcccHHHHHhcccCc---c--ccccChHHHHHHHhcCC--cEEEEEEcCCCcEEEEEEeEeeCC-----C---Cee
Q psy13682 4 LRAFTCDDMFKFNNVNLDP---L--TETYGLSFYMQYLAHWP--EYFQVAESPTGEIMGYIMGKAEGH-----G---DKW 68 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~---~--~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~ivG~~~~~~~~~-----~---~~~ 68 (175)
+|+++++|++++.++.... + ...++++++.-++.... -..+|.++.+|++-.++++...+. + ...
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 7999999999988875442 2 23456777777775433 357788876678888888766542 1 122
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeecc
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYS 137 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 137 (175)
.+++ ...+...- =-+.|+..++-.|++.|+.-+-.-...+| ..|.+.++|..-.-.-+||.
T Consensus 111 aAY~-fY~~~~~~----~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN---~~fL~~lKFg~GdG~L~YYL 171 (190)
T PF02799_consen 111 AAYS-FYYVATST----RLKELMNDALILAKNEGFDVFNALDLMDN---SSFLEDLKFGPGDGNLNYYL 171 (190)
T ss_dssp EEEE-EEEEESSS----HHHHHHHHHHHHHHHTTESEEEEESTTTG---GGTTTTTT-EEEEEEEEEEE
T ss_pred eeee-eeeeecCC----CHHHHHHHHHHHHHHcCCCEEehhhhccc---hhhHhhCCccCCCCCeEEEE
Confidence 3333 33343331 23568888888999999986554333455 47899999997655555554
No 109
>PRK14852 hypothetical protein; Provisional
Probab=96.24 E-value=0.034 Score=46.25 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred EeeC-CcccHHHHHhcccCccc-cccC----hHHHHHHHhcCCc-EEEEEEcCCCcEEEEEEeEeeCCC-----------
Q psy13682 4 LRAF-TCDDMFKFNNVNLDPLT-ETYG----LSFYMQYLAHWPE-YFQVAESPTGEIMGYIMGKAEGHG----------- 65 (175)
Q Consensus 4 ir~~-~~~d~~~l~~l~~~~~~-~~~~----~~~~~~~~~~~~~-~~~v~~~~~~~ivG~~~~~~~~~~----------- 65 (175)
+|.+ +.+|+.++..|..+.|. ..+. ...........+. ..+++.. .+++||..++.+....
T Consensus 31 ~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~-~~~~l~T~t~~~ds~~~Gl~~D~lf~~ 109 (989)
T PRK14852 31 IKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKS-YHDVLCTLTHIPDSGLFGLPMDTLYKP 109 (989)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEecc-CCcEEEEEEEecCCcccCcCHHHHHHH
Confidence 4554 34567777776555432 1111 1111122222233 3455555 4677777776655431
Q ss_pred --------CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHH-hcCcEEEEEEEeec
Q psy13682 66 --------DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYK-RLGYIVYRTVLEYY 136 (175)
Q Consensus 66 --------~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~~~~~~ 136 (175)
....+++..++++++.|.+-+--.+++.+..++...+++.+.+.|. +.-..||+ -+||+..+..+.|
T Consensus 110 eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn---PkH~~FY~r~l~f~~ig~~r~~- 185 (989)
T PRK14852 110 EVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN---PKHVKFYTDIFLFKPFGEVRHY- 185 (989)
T ss_pred HHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC---cchHHHHHHHhCCccccccccC-
Confidence 3347889999999988887777778888888887788888888665 66699999 6899999986544
Q ss_pred cCCCCcceeEEEeccc
Q psy13682 137 SGSPDEDAYDMRKALS 152 (175)
Q Consensus 137 ~~~~~~~~~~m~~~l~ 152 (175)
+.-+ .+.+.|..++.
T Consensus 186 p~Vn-aPAvll~~dl~ 200 (989)
T PRK14852 186 DTVD-APAVALRIDLH 200 (989)
T ss_pred CCCC-cchhheecCHH
Confidence 3322 67888888875
No 110
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=96.23 E-value=0.011 Score=38.59 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=86.1
Q ss_pred CCcccHHHHHhcccCccccc--cChHHH---HHHHhcCCcEEEEEEcCCCcEEEEEEeEe----eCCCCeeEEEEEEEEE
Q psy13682 7 FTCDDMFKFNNVNLDPLTET--YGLSFY---MQYLAHWPEYFQVAESPTGEIMGYIMGKA----EGHGDKWHGHVTALTV 77 (175)
Q Consensus 7 ~~~~d~~~l~~l~~~~~~~~--~~~~~~---~~~~~~~~~~~~v~~~~~~~ivG~~~~~~----~~~~~~~~~~i~~~~V 77 (175)
++.+|-.++.++....+... ++.+-+ ..+--..++.-.++.+ ...+.+.+.+.. ...-+.-.++++.++|
T Consensus 15 L~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD-~~GvaAH~G~LRRFIkVG~vDlLVaElGLygV 93 (196)
T PF02474_consen 15 LQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYD-SRGVAAHMGLLRRFIKVGEVDLLVAELGLYGV 93 (196)
T ss_pred cchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeec-CchHHHHHHHHHHHhccCCcceeEEEEEEEEe
Confidence 34455556666655555432 222222 1222233566677776 444444433211 1112444788999999
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc---Cc-------EEEEEEEeeccCCC---Ccce
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL---GY-------IVYRTVLEYYSGSP---DEDA 144 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~---Gf-------~~~~~~~~~~~~~~---~~~~ 144 (175)
+|+.+|.||+..| ..+...+.+.|+...+..|. .+..+.++++ |. ..-.+.++.+.+-+ .+|.
T Consensus 94 RpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR---~al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed~ 169 (196)
T PF02474_consen 94 RPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVR---HALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDV 169 (196)
T ss_pred eccccccccchhh-hhhhhHHHhcCCCeecccch---HHHHHHHHHHhccchhhcccCceeeccCccccCCCCCcccccc
Confidence 9999999999976 68888888899998888776 4555555555 44 22333444444333 2466
Q ss_pred eEEEecccccCCCCc
Q psy13682 145 YDMRKALSRDVHGKS 159 (175)
Q Consensus 145 ~~m~~~l~~~~~~~~ 159 (175)
+.+...+......+|
T Consensus 170 lv~V~Pi~r~~seWP 184 (196)
T PF02474_consen 170 LVVVLPIGRSMSEWP 184 (196)
T ss_pred eEEEEcCCCccccCC
Confidence 677766665555444
No 111
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.21 E-value=0.19 Score=33.28 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=69.8
Q ss_pred eCCcc-cHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeC-CCCeeEEEEEEEEECcchhc
Q psy13682 6 AFTCD-DMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEG-HGDKWHGHVTALTVAPDYRR 83 (175)
Q Consensus 6 ~~~~~-d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~-~~~~~~~~i~~~~V~~~~rg 83 (175)
.++.- |.+.|.++..+.+......+.+.+.++......++. +..-|.+.+.+.. ......+++.-++|.+..||
T Consensus 27 s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~d----~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g 102 (170)
T PF04768_consen 27 SLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYVD----EDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQG 102 (170)
T ss_dssp SCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEEE----TTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHH
T ss_pred CccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEEe----CCceEEEEEEecCCCCCCCCeEEEEEEecchhhh
Confidence 34444 788899988888866667777888887655444443 3344555565532 22334789999999999999
Q ss_pred cChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHH
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYK 122 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~ 122 (175)
.|++..+...+.+.. ..+...+..+|+ ..++|-
T Consensus 103 ~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~-~~~Wyf 135 (170)
T PF04768_consen 103 SGVADNVFNAIRKDF-----PKLFWRSREDNP-NNKWYF 135 (170)
T ss_dssp TTHHHHHHHHHHHH------SSEEEEEETT-T-THHHHH
T ss_pred cCHHHHHHHHHHHhc-----cceEEEecCCCC-cccEEE
Confidence 999999999886554 336676777664 455553
No 112
>KOG4601|consensus
Probab=96.13 E-value=0.082 Score=36.26 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=34.6
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHh
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKR 123 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k 123 (175)
..+|..++|++..|++|.|.+|++++++. .+.+-=-+.++......++|.+|
T Consensus 108 ~lcILDFyVheS~QR~G~G~~lfdyMl~k---E~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 108 ALCILDFYVHESEQRSGNGFKLFDYMLKK---ENVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred CceEEEEEeehhhhhcCchHHHHHHHHHh---cCCCchheeccChHHHHHHHHHH
Confidence 45678999999999999999999987654 33332122223333455666654
No 113
>KOG2779|consensus
Probab=95.73 E-value=0.13 Score=37.73 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCcEEEEEEeEeeC----CCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 50 TGEIMGYIMGKAEG----HGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 50 ~~~ivG~~~~~~~~----~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
.+++|||++.-+.. +.....++|..++|+...|+++++--|++++...+.-.|
T Consensus 144 s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~g 200 (421)
T KOG2779|consen 144 SKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEG 200 (421)
T ss_pred CCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhh
Confidence 56999999876543 224447889999999999999999999999998886544
No 114
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=95.66 E-value=0.52 Score=33.98 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=68.2
Q ss_pred CcEEEEEEcCCCcEEEEEEeEeeCCC---CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHc---------Ccc-EE
Q psy13682 40 PEYFQVAESPTGEIMGYIMGKAEGHG---DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKK---------RAY-FV 106 (175)
Q Consensus 40 ~~~~~v~~~~~~~ivG~~~~~~~~~~---~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~---------g~~-~i 106 (175)
.+..++.. .+.+|+.+++.+.... +.-...|.++.|+.=|..-|+-..|+++++-+.++. |.+ .+
T Consensus 169 ~NT~IIvY--RetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~l 246 (304)
T PF11124_consen 169 KNTHIIVY--RETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKL 246 (304)
T ss_pred CcceEEEE--cCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEE
Confidence 34455555 6899999998876654 344667889999999999999999999987666541 222 34
Q ss_pred EEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 107 DLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 107 ~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
.+++-..+....+..++.||+....
T Consensus 247 l~d~YSFD~~~~k~L~~~gF~~i~s 271 (304)
T PF11124_consen 247 LVDVYSFDKDMKKTLKKKGFKKISS 271 (304)
T ss_pred EEEeeeccHHHHHHHHHCCCeeeec
Confidence 4556677889999999999999874
No 115
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.61 E-value=0.066 Score=38.12 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=35.9
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
+..+|||.+=...... ...+.-+.|.|.||++|+|+.|++..-+..+..|
T Consensus 139 g~h~vGYFSKEK~s~~---~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEKVSAE---DYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceeccccC---CCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 3468999775544432 1235567799999999999999998777765543
No 116
>PRK00756 acyltransferase NodA; Provisional
Probab=95.55 E-value=0.11 Score=33.75 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCcEEEEEEeEee----CCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 40 PEYFQVAESPTGEIMGYIMGKAE----GHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 40 ~~~~~v~~~~~~~ivG~~~~~~~----~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
++.-.++.+ ...+.+.+.+... ..-+.-.++++.++|+|+..|.||+..+ ..+.-.+++.|+..-+..|..
T Consensus 53 PElRaIgyD-~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~ 127 (196)
T PRK00756 53 PELRAIAYD-SHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH 127 (196)
T ss_pred ceeEEEeec-CccHhHhHHHHhhhheecccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchH
Confidence 556667776 3344343332111 1114447889999999999999999876 677888888899987776663
No 117
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.16 Score=35.30 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=51.6
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecC
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSN 114 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n 114 (175)
.|++|+.+......++ ......+-+|++...++|+.++-.-+.++++.|...+++.-...+
T Consensus 159 ~G~LvAVavtDvL~dG----lSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~~ 219 (253)
T COG2935 159 EGKLVAVAVTDVLPDG----LSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIKG 219 (253)
T ss_pred CCcEEEEEeeecccCc----ceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEECC
Confidence 7999999998888775 222245679999999999999999999999999999999877655
No 118
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.53 E-value=0.068 Score=39.47 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred cHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhc-cChHHH
Q psy13682 11 DMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRR-LGIAAE 89 (175)
Q Consensus 11 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg-~Gig~~ 89 (175)
|++.+..+..+.|.......++..++...-...+|+. .--|.+.+...........++..++|.++.|| -|++..
T Consensus 346 dl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVsg----dY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~ 421 (495)
T COG5630 346 DLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVSG----DYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDA 421 (495)
T ss_pred CcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEeec----cceeeEEEEeeccCCCCCcceeeeeccccccccchHHHH
Confidence 5667778888888888888888888876544555544 34566666555443444788999999999999 999999
Q ss_pred HHHHHHHHHH
Q psy13682 90 LMSWLEDISE 99 (175)
Q Consensus 90 ll~~~~~~~~ 99 (175)
+..-+.+..-
T Consensus 422 vfniM~e~fP 431 (495)
T COG5630 422 VFNIMREEFP 431 (495)
T ss_pred HHHHHHHhCc
Confidence 9988776654
No 119
>PTZ00064 histone acetyltransferase; Provisional
Probab=95.10 E-value=0.061 Score=41.18 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=35.5
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
+-.+|||.+=...... ..-+.-|.|.|.||++|+|+.|++.--+..+..|
T Consensus 368 G~HiVGYFSKEK~S~~---~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 368 GCHIVGYFSKEKVSLL---HYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CcEEEEEecccccCcc---cCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 3478999775444332 2235567799999999999999987766665543
No 120
>PLN03239 histone acetyltransferase; Provisional
Probab=94.94 E-value=0.099 Score=38.32 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=35.1
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
+-.+|||.+=...... ...+.-|.|.|.||++|+|+.|++..-+..+..|
T Consensus 197 g~h~vGYFSKEK~s~~---~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 197 GFHPVGYYSKEKYSDV---GYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEEeeecccCCC---CCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 3478898775443322 1235567899999999999999987766665443
No 121
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.90 E-value=0.013 Score=44.08 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=44.1
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEE-----EEecCHHHHHHHHhcCcEEEEE
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLF-----VRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~-----~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
.+.|..+.|||+||+-|+|..-+..+.++..++-.....-. +...-.+-..|+++.||+....
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylwd 308 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLWD 308 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeeee
Confidence 34577899999999999999999999999988544432221 0000112235899999997644
No 122
>KOG2779|consensus
Probab=94.66 E-value=0.37 Score=35.44 Aligned_cols=125 Identities=17% Similarity=0.118 Sum_probs=78.2
Q ss_pred EeeCCcccHHHHHhcccCc-----cccccChHHHHHHHhcCCc--EEEEEEcCCCcEEEEEEeEeeCCC--------Cee
Q psy13682 4 LRAFTCDDMFKFNNVNLDP-----LTETYGLSFYMQYLAHWPE--YFQVAESPTGEIMGYIMGKAEGHG--------DKW 68 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~ivG~~~~~~~~~~--------~~~ 68 (175)
+|++++.|.+++.+|..+. ....++++++..++....+ ..+|++..+|.+-+|+++...... ...
T Consensus 263 ~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~ 342 (421)
T KOG2779|consen 263 LREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQ 342 (421)
T ss_pred cccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcceee
Confidence 6899999999998885442 2234566666666644333 567888778999999988765541 111
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeec
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYY 136 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~ 136 (175)
.+++ ...|+.+ -=-..|+..++-.++..|+.-...-....| ..|+++++|-+-...-+||
T Consensus 343 aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN---~~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 343 AAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMEN---ESFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred eeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhh---hhHHHhcCcCcCCCceeEE
Confidence 2222 2333333 113457777788888888886544333344 6799999997754443443
No 123
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=94.39 E-value=0.064 Score=40.73 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=34.0
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHH
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK 100 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~ 100 (175)
+-.+|||.+=...... ...+.-|.|.|.||++|+|+.|++..-+..+.
T Consensus 290 g~h~vGyFSKEk~s~~---~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 290 GCHMVGYFSKEKHSEE---DYNLACILTLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred CcEEEEEecccccCcC---CCceEEEEecchhhhcchhheehhheehhhhc
Confidence 3488999775444332 12355677999999999999999876555544
No 124
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=94.16 E-value=0.26 Score=37.49 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=62.8
Q ss_pred cCCcEEEEEEcCCCcEEEEEEeEeeCCC-CeeEEEEEEEEECc--chhccChHHHHHHHHHHHHHHcCccEEEEEE----
Q psy13682 38 HWPEYFQVAESPTGEIMGYIMGKAEGHG-DKWHGHVTALTVAP--DYRRLGIAAELMSWLEDISEKKRAYFVDLFV---- 110 (175)
Q Consensus 38 ~~~~~~~v~~~~~~~ivG~~~~~~~~~~-~~~~~~i~~~~V~~--~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~---- 110 (175)
.+....+.+.+++++++|.+.+...... ....+++. =-| +|...-+-..++..+.++++++++-.|.+..
T Consensus 32 gw~~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yip---rGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~ 108 (406)
T PF02388_consen 32 GWEVERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIP---RGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIY 108 (406)
T ss_dssp TSEEEEEEEE-TTS-EEEEEEEEEEECTTTCEEEEET---T--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EE
T ss_pred CCeEEEEEEEeCCCeEEEEEEEEEeccCCceeEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhh
Confidence 3333444444434777776655444332 22223321 124 6777778888899999999887776665542
Q ss_pred -----------EecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccc
Q psy13682 111 -----------RVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSR 153 (175)
Q Consensus 111 -----------~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (175)
...|...+..++++||...+....+-... .+.+.+.++|+.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~--qpr~~~v~dL~~ 160 (406)
T PF02388_consen 109 QERDEDGEPIEGEENDELIENLKALGFRHQGFTKGYDDTI--QPRWTYVKDLTG 160 (406)
T ss_dssp ECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSS--S-SEEEEEEGCC
T ss_pred hhcccccccccCcchHHHHHHHHhcCceecCcccCCCccc--CccEEEEEECCC
Confidence 12456788999999999987654332222 788999999987
No 125
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=94.16 E-value=0.19 Score=30.07 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=33.9
Q ss_pred EEEEEEcCCCcEEEEEEeEeeCCC--------------------CeeEEEEEEEEECcchhccChHHHHH
Q psy13682 42 YFQVAESPTGEIMGYIMGKAEGHG--------------------DKWHGHVTALTVAPDYRRLGIAAELM 91 (175)
Q Consensus 42 ~~~v~~~~~~~ivG~~~~~~~~~~--------------------~~~~~~i~~~~V~~~~rg~Gig~~ll 91 (175)
.+++... +.++||++.+...... ....+++..++|+|+||+......|+
T Consensus 32 h~lv~~~-~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDK-NTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEEC-CCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3444433 3369999987654431 23477899999999999988777664
No 126
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=94.08 E-value=0.73 Score=33.42 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=55.4
Q ss_pred EEeeC---CcccHHHHHhcccCccccc--cChHHHHHHHhc---CCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEE
Q psy13682 3 TLRAF---TCDDMFKFNNVNLDPLTET--YGLSFYMQYLAH---WPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTA 74 (175)
Q Consensus 3 ~ir~~---~~~d~~~l~~l~~~~~~~~--~~~~~~~~~~~~---~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~ 74 (175)
.+.+. ++++.+++.++..+..... .........+.. .....+++...+|+++|++.+.+...... ..++-
T Consensus 134 ~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~~--~~~~~ 211 (299)
T PF09924_consen 134 EVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRDG--WSIDF 211 (299)
T ss_dssp EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TTE--EEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCcc--EEEEE
Confidence 34555 6777788777643322221 112222222221 13455666655899999999998873222 22322
Q ss_pred EEECcchhccChHHHHHHHHHHHHHHcCccEEEEEE
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~ 110 (175)
.--+++ --+|+-..|+..+++.+++.|+..+.+..
T Consensus 212 ~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 212 EKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp EEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred EecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 333455 34699999999999999988999887654
No 127
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.56 E-value=1.2 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=24.4
Q ss_pred ccEEEEEEEecCHHHHHHHHhcCcEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKRLGYIVYR 130 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 130 (175)
+..++-.|...|..+++|.+.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 5668888999999999999999998653
No 128
>KOG2747|consensus
Probab=92.54 E-value=0.32 Score=36.36 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=22.8
Q ss_pred EEEEEECcchhccChHHHHHHHHHHHHHH
Q psy13682 72 VTALTVAPDYRRLGIAAELMSWLEDISEK 100 (175)
Q Consensus 72 i~~~~V~~~~rg~Gig~~ll~~~~~~~~~ 100 (175)
+.-+-|.|.||++|+|+.|+++--+..+.
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYeLSr~ 291 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYELSRR 291 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhhhhcc
Confidence 55577999999999999999865555543
No 129
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=91.80 E-value=1.9 Score=26.28 Aligned_cols=61 Identities=21% Similarity=0.119 Sum_probs=41.5
Q ss_pred CCcEEEEEEeEeeCCC---CeeEEEEEEEEECcchhc-cChHHHHHHHHHHHHHHcCccE-EEEEEEecCH
Q psy13682 50 TGEIMGYIMGKAEGHG---DKWHGHVTALTVAPDYRR-LGIAAELMSWLEDISEKKRAYF-VDLFVRVSNT 115 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~---~~~~~~i~~~~V~~~~rg-~Gig~~ll~~~~~~~~~~g~~~-i~~~~~~~n~ 115 (175)
++..=|.+.+...... ....+++.-++|.+..|| .|++..+...+.+. ... ++..+..+|+
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~-----fp~~L~Wrsr~~n~ 82 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDG-----FPNELIWRSRKDNP 82 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHc-----CCCceEEEeCCCCc
Confidence 3444455555544321 133688999999999997 89999999887762 343 6666766664
No 130
>KOG2696|consensus
Probab=91.21 E-value=0.89 Score=33.72 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=33.1
Q ss_pred EEEEEEeEeeCCC-CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHH
Q psy13682 53 IMGYIMGKAEGHG-DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK 100 (175)
Q Consensus 53 ivG~~~~~~~~~~-~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~ 100 (175)
++|+..+.....- ......+..+-+.|.|||+|+|+.+++.+......
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~ 248 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLE 248 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhcc
Confidence 4555555443321 22345566788999999999999999999855543
No 131
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=90.65 E-value=1.6 Score=29.25 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=58.9
Q ss_pred EcCCCcEEEEEEeEeeCCC-------------------------CeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHc
Q psy13682 47 ESPTGEIMGYIMGKAEGHG-------------------------DKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKK 101 (175)
Q Consensus 47 ~~~~~~ivG~~~~~~~~~~-------------------------~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~ 101 (175)
.+.+|++++.+++...... .....+++.++.. +.|.+..|+..+..++...
T Consensus 40 ~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~ 115 (179)
T PF12261_consen 40 RDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQ 115 (179)
T ss_pred ccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHC
Confidence 3558999999888776532 1114556666543 5799999999999999999
Q ss_pred CccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
|++-+.+ +.+..-++++.++|......
T Consensus 116 g~~w~vf---TaT~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 116 GFEWVVF---TATRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred CCCEEEE---eCCHHHHHHHHHcCCCceec
Confidence 9997666 55688999999999987643
No 132
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=90.37 E-value=3 Score=31.43 Aligned_cols=115 Identities=11% Similarity=0.032 Sum_probs=68.4
Q ss_pred CCcccHHHHHhcccCcccccc-----ChHHHHHHHhcCCc-E-EEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECc
Q psy13682 7 FTCDDMFKFNNVNLDPLTETY-----GLSFYMQYLAHWPE-Y-FQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAP 79 (175)
Q Consensus 7 ~~~~d~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~-~-~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~ 79 (175)
+++++++.+..++.+.+...+ +.+++....+.-++ . .+++.. +|++||++......+. .+-.......
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~-~g~~Va~aL~l~~~~~----LyGRYwG~~~ 284 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARR-DGQPVAFALCLRGDDT----LYGRYWGCDE 284 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEE-CCeEEEEEEEEEeCCE----EEEeeecccc
Confidence 345667777777655443322 34555554444333 3 444554 8999999988776542 3333344445
Q ss_pred chhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 80 DYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 80 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
++.+.-+ ..+.-..+++|-++|++.+.......++ ...||+++....
T Consensus 285 ~~~~LHF-e~cYYq~Ie~aI~~Gl~~f~~GaqGEHK------~~RGf~P~~t~S 331 (370)
T PF04339_consen 285 EIPFLHF-ELCYYQGIEYAIEHGLRRFEPGAQGEHK------IARGFEPVPTYS 331 (370)
T ss_pred cccCcch-HHHHHHHHHHHHHcCCCEEECCcchhHH------HHcCCcccccee
Confidence 5544332 3345678999999999997776443322 256998876643
No 133
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=89.12 E-value=4.6 Score=35.05 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred EEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 42 YFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 42 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
..+++.+.+|+++|++.+.+.... + ..+.-+--+|+. -.|+...|+..++.++++.|+..+.+...+
T Consensus 421 ~i~~a~d~~G~i~af~s~~p~~~~-g--~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 421 LLVEAHDADGQVVALLSFVPWGRR-G--LSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred EEEEEECCCCeEEEEEEEeeeCCC-C--EEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 344566667999999999996532 2 344444445664 689999999999999999999999887543
No 134
>PRK04531 acetylglutamate kinase; Provisional
Probab=88.63 E-value=2.3 Score=32.33 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred cHHHHHhcccCccccccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHH
Q psy13682 11 DMFKFNNVNLDPLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAEL 90 (175)
Q Consensus 11 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l 90 (175)
|.+.+.++...++...... .+++. .. .+-++. ++..=|.+.+..... .+++.-++|.+..||.|++..+
T Consensus 263 d~~~l~~ll~~sf~r~~~~----~y~~~-~~-~~~~y~-~~~y~~~Aiv~~~~~----~~~Ldkf~v~~~~~~~~v~d~v 331 (398)
T PRK04531 263 DLERLNLLIESSFGRTLKP----DYFDT-TQ-LLRAYV-SENYRAAAILTETGG----GPYLDKFAVLDDARGEGLGRAV 331 (398)
T ss_pred CHHHHHHHHhhhcccchHH----HHhcc-CC-ceEEEE-eCCCcEEEEEecCCC----ceEeEEEEEccchhhcChHHHH
Confidence 5556666664444332222 22222 12 222222 444445555544322 5789999999999999999999
Q ss_pred HHHHHHHHHHcCccEEEEEEEecCH
Q psy13682 91 MSWLEDISEKKRAYFVDLFVRVSNT 115 (175)
Q Consensus 91 l~~~~~~~~~~g~~~i~~~~~~~n~ 115 (175)
...+.+.. ..++..+..+|+
T Consensus 332 f~~~~~~~-----~~L~Wrsr~~n~ 351 (398)
T PRK04531 332 WNVMREET-----PQLFWRSRHNNT 351 (398)
T ss_pred HHHHHhhC-----CceEEEcCCCCC
Confidence 98887664 356777776665
No 135
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=87.61 E-value=4.1 Score=29.79 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=40.9
Q ss_pred CcEEEEEEeEeeCC----CCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC
Q psy13682 51 GEIMGYIMGKAEGH----GDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR 102 (175)
Q Consensus 51 ~~ivG~~~~~~~~~----~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g 102 (175)
.++|||+...+..- ......++..++|+.+.|++.+.-.|+.++...+-..|
T Consensus 143 ~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~ 198 (451)
T COG5092 143 QKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDG 198 (451)
T ss_pred ceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhh
Confidence 48999988655432 13336788899999999999999999999998886543
No 136
>KOG3014|consensus
Probab=87.23 E-value=6.7 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.054 Sum_probs=26.8
Q ss_pred eEEEEEEEEECcchhccChHHHHHHHHHHHHH
Q psy13682 68 WHGHVTALTVAPDYRRLGIAAELMSWLEDISE 99 (175)
Q Consensus 68 ~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~ 99 (175)
..+-|..++|.+..|++|+++.|+..+.....
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 35668899999999999999999988766554
No 137
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=87.10 E-value=0.42 Score=35.03 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=27.0
Q ss_pred cEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHH
Q psy13682 52 EIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSW 93 (175)
Q Consensus 52 ~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~ 93 (175)
.+|||.+=...... ...+.-+-+.|.||++|+|+.|+++
T Consensus 248 h~vGyFSKEK~S~~---~yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 248 HLVGYFSKEKESEQ---DYNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred eeeeeechhhcccc---cCceEEEEecChhHhcccceEeeee
Confidence 47888764443332 1234456689999999999988764
No 138
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=85.36 E-value=14 Score=27.97 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=76.6
Q ss_pred eeCCcccHHHHHhcccCccccccChHHHHHHHhcCC---------cEEEEEEcCCCcEEEEEEeEeeCCCCee-------
Q psy13682 5 RAFTCDDMFKFNNVNLDPLTETYGLSFYMQYLAHWP---------EYFQVAESPTGEIMGYIMGKAEGHGDKW------- 68 (175)
Q Consensus 5 r~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~ivG~~~~~~~~~~~~~------- 68 (175)
..+..++++.+..= -..|+..-.+...++... -..+++.+ +|++||.+-+......-+-
T Consensus 3 ~~I~~~~W~~l~~~----~~~PF~~~~fL~aLE~sg~v~~~tGW~p~hl~~~~-~~~lvaa~P~YlK~hS~GEyvFD~~W 77 (370)
T PF04339_consen 3 SEIPAADWDALAGP----DDNPFLRHAFLAALEESGSVGPETGWQPRHLTLRD-GGRLVAAAPLYLKSHSYGEYVFDWAW 77 (370)
T ss_pred hhCCHHHHHHHhCC----CCCchhhHHHHHHHHHcCCcCCCCCCcceEEEEEE-CCEEEEEeeeeeecccCcceehhHHH
Confidence 33445555555331 224555555666665431 24456666 7999999988776543000
Q ss_pred ---------------EE-------EEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCc
Q psy13682 69 ---------------HG-------HVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126 (175)
Q Consensus 69 ---------------~~-------~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf 126 (175)
.. .=..+.++|......+...|++.+.+.+.+.|+..+.+. -.++.-....+..||
T Consensus 78 a~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~l--F~~~~~~~~l~~~G~ 155 (370)
T PF04339_consen 78 ADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQALEQLAEENGLSSWHIL--FPDEEDAAALEEAGF 155 (370)
T ss_pred HHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceee--cCCHHHHHHHHhCCC
Confidence 00 011467788888888899999999999999999876653 333555677889999
Q ss_pred EEEEE
Q psy13682 127 IVYRT 131 (175)
Q Consensus 127 ~~~~~ 131 (175)
.....
T Consensus 156 ~~r~~ 160 (370)
T PF04339_consen 156 LSRQG 160 (370)
T ss_pred ceecC
Confidence 87543
No 139
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=84.92 E-value=5.1 Score=28.61 Aligned_cols=60 Identities=10% Similarity=-0.096 Sum_probs=43.0
Q ss_pred EEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHH----HHHHHHHHHcCccE
Q psy13682 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELM----SWLEDISEKKRAYF 105 (175)
Q Consensus 45 v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll----~~~~~~~~~~g~~~ 105 (175)
+... +|++||+-.+...+.+..-.......+++|+++.--.|+.|+ +.+.+++.++|.+-
T Consensus 177 vL~l-~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~l 240 (264)
T PF07395_consen 177 VLFL-NGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKPL 240 (264)
T ss_pred EEEE-CCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCce
Confidence 4444 899999988888776543333444677899999999999774 56666776666553
No 140
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=83.28 E-value=12 Score=29.69 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=48.0
Q ss_pred EEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEE
Q psy13682 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110 (175)
Q Consensus 45 v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~ 110 (175)
.+.+.+|+++|++.+.+..... ...+.-+--+|+.- +|+...|...++.+++++|++++.+..
T Consensus 396 a~~~~~g~VvaFa~l~~~~~~~--~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 396 AAVDNEGEVVAFANLMPTGGKE--GYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred eEEcCCCCeEEEEeecccCCcc--eeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 3344478899999999876543 24455555566654 689999999999999999999998864
No 141
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=80.57 E-value=4.1 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=35.9
Q ss_pred chhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 80 DYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 80 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
+=||-|+|+.+++.+.+.+.+ .+.+....+|.-|..-..|.|-..-
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~g 51 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEG 51 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCc
Confidence 458999999999988877654 2455566788888888999988754
No 142
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=80.21 E-value=10 Score=22.69 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=40.5
Q ss_pred CcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCH
Q psy13682 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNT 115 (175)
Q Consensus 51 ~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 115 (175)
+..=|.+.+...... .+++.-++|.+..++.|++..+...+.+.. ..+...+..+|+
T Consensus 18 e~y~~~AIvt~~~~~---v~~LdkFav~~~~~~~gv~D~vf~~i~~d~-----~~L~Wrsr~~n~ 74 (98)
T cd03173 18 EPLEGVAIVTYEGNS---IPYLDKFAVSDHLWLNNVTDNIFNLIRKDF-----PSLLWRVRENDA 74 (98)
T ss_pred CCccEEEEEecCCCC---CEEEEEEEEcccccccCHHHHHHHHHHhhC-----CeeEEEeCCCCC
Confidence 334455555544322 578999999999999999999998777652 456676766664
No 143
>PHA02769 hypothetical protein; Provisional
Probab=79.72 E-value=5.3 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHH---cCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 87 AAELMSWLEDISEK---KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 87 g~~ll~~~~~~~~~---~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
|..|+.++...+.+ .|+..++ +...-..|..+|.|.||+.++..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlw--tlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLW--TLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEE--EecCCCcchhHHhhhhhhHhccc
Confidence 55666666555544 5666543 33333467889999999998764
No 144
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=76.89 E-value=6.8 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHH--cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 85 GIAAELMSWLEDISEK--KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~--~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
|+|..++..+++.... .....+.+........-+++...+||....+.-
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 8899999998888765 356677787666666778899999999998743
No 145
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=76.01 E-value=19 Score=26.48 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=66.7
Q ss_pred EeeCCcccHHHHHhcccCcc-----ccccChHHHHHHHhcC-------CcEEEEEEcCCCcEEEEEEeEeeCCC------
Q psy13682 4 LRAFTCDDMFKFNNVNLDPL-----TETYGLSFYMQYLAHW-------PEYFQVAESPTGEIMGYIMGKAEGHG------ 65 (175)
Q Consensus 4 ir~~~~~d~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~ivG~~~~~~~~~~------ 65 (175)
+|++...|.+++.+|..+.. -+.+..+.+...+... -...+|+...+|.|-+|.++......
T Consensus 261 lR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~k 340 (451)
T COG5092 261 LRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENKK 340 (451)
T ss_pred cchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCcc
Confidence 58888999999988864421 1122233332222111 12456777778999898887665421
Q ss_pred --CeeEEEEEEEEECcchhccChHH-----------HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 66 --DKWHGHVTALTVAPDYRRLGIAA-----------ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 66 --~~~~~~i~~~~V~~~~rg~Gig~-----------~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+-..+++-..+.+..+ +-+.. .|+..++-.++..|+.-+-.-+..+| --|...++|..-.-.
T Consensus 341 ykdiq~gYLYYya~d~~~--kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN---~lFL~dLkFg~GdGf 415 (451)
T COG5092 341 YKDIQGGYLYYYAGDDQF--KDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDN---SLFLADLKFGCGDGF 415 (451)
T ss_pred ccccceeEEEEEccCccc--cccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccc---hhHHHhcCccCCCce
Confidence 2223444344444422 23332 23334444455556654433333444 457888888765443
Q ss_pred Eee
Q psy13682 133 LEY 135 (175)
Q Consensus 133 ~~~ 135 (175)
-+|
T Consensus 416 lny 418 (451)
T COG5092 416 LNY 418 (451)
T ss_pred eEE
Confidence 343
No 146
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=74.50 E-value=17 Score=26.40 Aligned_cols=76 Identities=9% Similarity=0.006 Sum_probs=48.2
Q ss_pred ChHHHHHHHhcCCc--EEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHH----HHHHHHHHHc
Q psy13682 28 GLSFYMQYLAHWPE--YFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELM----SWLEDISEKK 101 (175)
Q Consensus 28 ~~~~~~~~~~~~~~--~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll----~~~~~~~~~~ 101 (175)
..+...+.+..-++ .-.|... +|+++|+-.+...+.+..-.......+++|++...-.|+-|+ +.+.+++.++
T Consensus 188 ~~~~l~e~f~~Lr~l~fG~VLfl-~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~ 266 (298)
T PRK15312 188 PADNLANFFSQLRHLLFGHILYI-EGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQER 266 (298)
T ss_pred cHHHHHHHHHHhHHhheeeEEEE-CCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEEEEecHHHHHHHHHhc
Confidence 34555554443322 2234444 899999988888776543333444677999999999998774 4555555555
Q ss_pred Ccc
Q psy13682 102 RAY 104 (175)
Q Consensus 102 g~~ 104 (175)
|.+
T Consensus 267 ~K~ 269 (298)
T PRK15312 267 QKK 269 (298)
T ss_pred CCc
Confidence 544
No 147
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=72.76 E-value=42 Score=25.96 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=63.3
Q ss_pred EEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEE-Cc--chhccChHHHHHHHHHHHHHHcCccEEEEEE----------
Q psy13682 44 QVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTV-AP--DYRRLGIAAELMSWLEDISEKKRAYFVDLFV---------- 110 (175)
Q Consensus 44 ~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V-~~--~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~---------- 110 (175)
+.+.. +++.|+.+++........ ....+.- .| +|-++..-..++..+.+++++..+-.|.+..
T Consensus 43 ~~v~~-~~~~v~aa~ll~k~~~~~---~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~ 118 (418)
T COG2348 43 IGVKK-DGNAVIAASLLSKKLPLG---FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLG 118 (418)
T ss_pred EEEEe-cCceeeeeeeeeeeccCC---ceEEEecCCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCC
Confidence 33444 666666665554443322 1212222 34 7888888888888888888876665554431
Q ss_pred -----EecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccc
Q psy13682 111 -----RVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSR 153 (175)
Q Consensus 111 -----~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (175)
...|.+.++.+.++|++..+....+-... ++.+....++..
T Consensus 119 ~~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~~i--qp~~~~~ldl~d 164 (418)
T COG2348 119 GEIIENYNNLAIIKLLKDLGYKHSGFTKGLDDSI--QPRWHSVLDLKD 164 (418)
T ss_pred CccccCcchHHHHHHHHHhhhhhcCcccccCccc--ccchhhhccccc
Confidence 14567889999999999988765543322 555555555544
No 148
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=72.14 E-value=6.3 Score=23.88 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=17.2
Q ss_pred EEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 105 FVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 105 ~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.+.+.|. +=.+|++||+++||+..
T Consensus 3 ~i~l~V~-D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 3 AVGIVVA-DMAKSLDFYRRLGFDFP 26 (122)
T ss_pred eEEEEec-cHHHHHHHHHHhCceec
Confidence 3445443 33689999999999875
No 149
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=70.99 E-value=5.1 Score=25.12 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=20.1
Q ss_pred ccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+.++.+.|. +=.++.+||.++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 455656554 3368999999999987654
No 150
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=70.57 E-value=26 Score=26.77 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred CccccccChHHHHHHHhcC---CcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHH
Q psy13682 21 DPLTETYGLSFYMQYLAHW---PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDI 97 (175)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~ 97 (175)
+.+...|..+++.+..... ...-+.....+|.+|+......... +.+..-..++|++=.--=|..|+..++++
T Consensus 248 Dlf~~~~t~~fl~dL~~~~~~d~~~rl~gL~~G~~lvAV~~~lr~~~----t~h~~l~a~dpe~~~~SPG~~lf~d~i~~ 323 (406)
T COG5653 248 DLFRAGWTRDFLRDLFTQRAEDGSGRLFGLHAGGRLVAVHGLLRQGG----TYHAWLGAIDPEFARASPGMLLFLDLIEW 323 (406)
T ss_pred cccccchHHHHHHHHHhccCcCCceEEEEEeeCCEEEEEEeeeccCC----EEEEEeeccCHHHhhcCchHHHHHHHHHH
Confidence 3455566666666655432 2222333333778988877766544 34444578899999888899999999999
Q ss_pred HHHcCccEEEEEEEe
Q psy13682 98 SEKKRAYFVDLFVRV 112 (175)
Q Consensus 98 ~~~~g~~~i~~~~~~ 112 (175)
+..+|+..+-+.|..
T Consensus 324 ~~~~g~~~~DfgvG~ 338 (406)
T COG5653 324 ACGQGLARFDFGVGD 338 (406)
T ss_pred HhcCCCeEEeecCCC
Confidence 999999987776543
No 151
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=68.91 E-value=17 Score=22.79 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=14.9
Q ss_pred CHHHHHHHH-hcCcEEEEEE
Q psy13682 114 NTVAITMYK-RLGYIVYRTV 132 (175)
Q Consensus 114 n~~~~~~y~-k~Gf~~~~~~ 132 (175)
-.+|++||+ .+||+...+.
T Consensus 13 lerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 13 RNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred HHHHHHHHHHhcCCEEEeee
Confidence 369999995 5999987654
No 152
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=63.52 E-value=19 Score=25.44 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCccEEEEEE---EecCHHHHHHHHhcCcEEEEEE
Q psy13682 88 AELMSWLEDISEKKRAYFVDLFV---RVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 88 ~~ll~~~~~~~~~~g~~~i~~~~---~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
+.-...+.+.+++.|+++|.+-+ ..-|....+||++.||++....
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 44556677777888999998864 3456788999999999998763
No 153
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.52 E-value=14 Score=22.47 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.5
Q ss_pred CHHHHHHHHhcCcEEEE
Q psy13682 114 NTVAITMYKRLGYIVYR 130 (175)
Q Consensus 114 n~~~~~~y~k~Gf~~~~ 130 (175)
=.+|+.||+.+||+...
T Consensus 11 l~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 11 LEKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 36899999999999764
No 154
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.11 E-value=23 Score=24.50 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHcCccEEEEE---EEecCHHHHHHHHhcCcEEEEE
Q psy13682 94 LEDISEKKRAYFVDLF---VRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 94 ~~~~~~~~g~~~i~~~---~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+.+-++..|.+++.+- +..-|.....|++++||++...
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 3444555777777764 3457889999999999999865
No 155
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=62.79 E-value=23 Score=21.76 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=41.1
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.+++-|.-++...... .....+--+++.| ..+..+++.+.+.|++.+++.....+....++.+++|.+..
T Consensus 37 ~~~i~G~~~y~sl~e~-p~~iDlavv~~~~---------~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 37 GGEILGIKCYPSLAEI-PEPIDLAVVCVPP---------DKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp CSEETTEE-BSSGGGC-SST-SEEEE-S-H---------HHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred ceEECcEEeeccccCC-CCCCCEEEEEcCH---------HHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 4555566555444321 0122333344433 35566666777789999999888888999999999999988
Q ss_pred EE
Q psy13682 130 RT 131 (175)
Q Consensus 130 ~~ 131 (175)
+.
T Consensus 107 gp 108 (116)
T PF13380_consen 107 GP 108 (116)
T ss_dssp ES
T ss_pred eC
Confidence 63
No 156
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=62.12 E-value=20 Score=18.22 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=20.4
Q ss_pred ccChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEe
Q psy13682 26 TYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMG 59 (175)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~ 59 (175)
..+.....+.+.......+.+.+++++++|.+..
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 15 DDSLEEALEIMRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp TSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred cCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence 3444555555544444445455558999999864
No 157
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=61.99 E-value=13 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=19.8
Q ss_pred ccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+.++.+.|.. =.++.+||..+||+....
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4455555432 368999999999998654
No 158
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=61.06 E-value=13 Score=22.25 Aligned_cols=27 Identities=15% Similarity=-0.052 Sum_probs=18.9
Q ss_pred cEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
.++.+.|.. =.+|.+||..+||+....
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 445555443 358999999999987654
No 159
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.51 E-value=10 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCcEEEEEE
Q psy13682 115 TVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 115 ~~~~~~y~k~Gf~~~~~~ 132 (175)
.++++||+.+||+.....
T Consensus 13 ~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 13 AESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHhCCeeEecC
Confidence 589999999999987654
No 160
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=58.77 E-value=82 Score=24.25 Aligned_cols=75 Identities=12% Similarity=-0.049 Sum_probs=46.2
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEE-EEecCHH---HHHHHH-hc
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLF-VRVSNTV---AITMYK-RL 124 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~-~~~~n~~---~~~~y~-k~ 124 (175)
++.+++.+.+..... .++...-+-+++|+.-+-...|..+++++|.++|+...-+. +...... ...+|. |.
T Consensus 301 ~~~~la~~l~~~~g~----~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~~~~~Gl~~FK~ 376 (406)
T PF02388_consen 301 DEIPLAGALFIYYGD----EAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGGISGDFDGSDPDYGLYKFKK 376 (406)
T ss_dssp SEEEEEEEEEEEETT----EEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE-SSSSTTTHTTHHHHHHHH
T ss_pred CcceEEEEEEEEECC----EEEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeCCCCCCCCCcccchHHHHhh
Confidence 344666666555544 24444667889999999888888899999999999976653 3332222 224554 55
Q ss_pred CcEE
Q psy13682 125 GYIV 128 (175)
Q Consensus 125 Gf~~ 128 (175)
||-.
T Consensus 377 ~F~g 380 (406)
T PF02388_consen 377 GFGG 380 (406)
T ss_dssp CCT-
T ss_pred cCCC
Confidence 6643
No 161
>PRK10150 beta-D-glucuronidase; Provisional
Probab=57.94 E-value=1e+02 Score=25.11 Aligned_cols=81 Identities=11% Similarity=-0.030 Sum_probs=56.1
Q ss_pred EEEEEEeEeeCCC---CeeEEEEEEEEECcchh--ccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcE
Q psy13682 53 IMGYIMGKAEGHG---DKWHGHVTALTVAPDYR--RLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYI 127 (175)
Q Consensus 53 ivG~~~~~~~~~~---~~~~~~i~~~~V~~~~r--g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~ 127 (175)
-+|+=.+...... .+....+.++..+++.- |.++..+.+..-++.+++.|+..|++.-.+..+....+.-++|+-
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~Gll 351 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIV 351 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcE
Confidence 3566665554322 33356677777777654 444556677777888999999999986555567778888899998
Q ss_pred EEEEEE
Q psy13682 128 VYRTVL 133 (175)
Q Consensus 128 ~~~~~~ 133 (175)
+..+.+
T Consensus 352 V~~E~p 357 (604)
T PRK10150 352 VIDETP 357 (604)
T ss_pred EEEecc
Confidence 887754
No 162
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=56.28 E-value=24 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 105 FVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 105 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
++.+.|. +=.++.+||++ +||+.....
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 4555553 33689999999 999987654
No 163
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=56.18 E-value=24 Score=21.10 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=19.8
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
+.++.+.|..- ..+.+||.+ +||+.....
T Consensus 2 i~hv~l~v~d~-~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITRDA-QETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcCCh-hHhHHHHHHccCCEEeeeE
Confidence 34555655333 589999985 899987654
No 164
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=55.33 E-value=36 Score=23.82 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHH--cCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 85 GIAAELMSWLEDISEK--KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~--~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
|+|-.++..+++...+ .+..++.+.....-..-+.+..+++|....+.
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 8899999998888876 46778877554444566788999999998763
No 165
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=54.82 E-value=14 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.1
Q ss_pred CHHHHHHHHhcCcEEEEEEE
Q psy13682 114 NTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 114 n~~~~~~y~k~Gf~~~~~~~ 133 (175)
=.+|++||.++||+......
T Consensus 13 l~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 13 LDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHHcCCEEEecCC
Confidence 36899999999999876543
No 166
>KOG4387|consensus
Probab=53.43 E-value=67 Score=21.62 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=51.0
Q ss_pred EEECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCH---HHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEec
Q psy13682 75 LTVAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNT---VAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKA 150 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~---~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~ 150 (175)
+..-|+-.=-+.-++=+-.++++|.+ ..+.++++....++. +-.+-+.=.||++.......... ..+.++|+..
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp--~~~~ffM~Y~ 182 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPP--RPDVFFMVYP 182 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCC--ccceEEEEEe
Confidence 33444444455556667777888876 588999988776553 34455667888887654111122 2678999988
Q ss_pred ccccCC
Q psy13682 151 LSRDVH 156 (175)
Q Consensus 151 l~~~~~ 156 (175)
+.++..
T Consensus 183 ~er~~~ 188 (191)
T KOG4387|consen 183 LERDVS 188 (191)
T ss_pred eccccc
Confidence 876543
No 167
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=51.97 E-value=22 Score=23.13 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=20.1
Q ss_pred CccEEEEEEEecCHHHHHHHHh-cCcEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR-LGYIVYR 130 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 130 (175)
++.++.+.|..- .+|+.||++ +||+...
T Consensus 4 ~i~Hv~i~V~Dl-e~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVPDL-DAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeCCH-HHHHHHHHHhcCCEEEe
Confidence 456666665433 689999977 8998754
No 168
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=51.68 E-value=33 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=22.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTVL 133 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~~ 133 (175)
+.++.+.|... .++..||.+ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 34566655444 589999996 9999988766
No 169
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=51.35 E-value=84 Score=22.79 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=41.8
Q ss_pred EEEEEEEEECcchhccC--hHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEe
Q psy13682 69 HGHVTALTVAPDYRRLG--IAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~G--ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (175)
...+.++.-++++-+.| +-.+.+..=+..+++.|+..|++...+.++.-..+.-++|+-+....+.
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 45677777777665444 4466777777888999999999855555677788888999998877543
No 170
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=50.68 E-value=48 Score=21.98 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=26.6
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
..++|--|+|.++++ ..|++++.+- .+|+....-.+..|-++.+..+
T Consensus 122 ~~d~R~ygigaqIL~-------dLGV~~~rLL--tnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQILR-------DLGVKKMRLL--TNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHHH-------HTT--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHHH-------HcCCCEEEEC--CCChhHHHHHhcCCCEEEEEec
Confidence 467777788877764 5788887764 5568888888999988887653
No 171
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=49.81 E-value=9.7 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=15.9
Q ss_pred EEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccCh
Q psy13682 44 QVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGI 86 (175)
Q Consensus 44 ~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gi 86 (175)
++.+ +|++||=..+..+.... ..+.+-.+..+|||||+
T Consensus 319 F~le--hGQ~vgrLvyE~m~~~P---~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 319 FILE--HGQIVGRLVYERMAERP---ERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EEEE--TT-EEEEEEEEEBSS-------TTSS-----------
T ss_pred eeee--CCcEEEEEEehhhccCc---cccccccccccchhhhh
Confidence 4444 79999999998887642 22334457889999986
No 172
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=48.84 E-value=30 Score=20.61 Aligned_cols=30 Identities=33% Similarity=0.341 Sum_probs=21.5
Q ss_pred CccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
++.++.+.|. +=.++.+||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 4556666653 33689999998 899987553
No 173
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=48.29 E-value=30 Score=20.66 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=20.3
Q ss_pred CccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
++..+.+.+.. =..+.+||++ +||+....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEe
Confidence 34556665533 3689999997 99998654
No 174
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=47.59 E-value=34 Score=20.61 Aligned_cols=29 Identities=28% Similarity=0.122 Sum_probs=19.5
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
+..+.+.|.. =.+|.+||.+ +||+.....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 4455555533 2688999975 999986553
No 175
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=47.33 E-value=52 Score=22.07 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
|+-|+.++.+.+++ .+..+++-+....+....+.++.|++....
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~t 69 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIET 69 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEc
Confidence 67788888888877 788888988888889999999999887755
No 176
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=46.28 E-value=44 Score=21.93 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=34.5
Q ss_pred hccChHHHH-HHHHHHHHHHcCccEEEEEE--Ee--cCHHHHHHHHhcCcEEEEEE
Q psy13682 82 RRLGIAAEL-MSWLEDISEKKRAYFVDLFV--RV--SNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 82 rg~Gig~~l-l~~~~~~~~~~g~~~i~~~~--~~--~n~~~~~~y~k~Gf~~~~~~ 132 (175)
.+.++++.- ++++++.++..|+++|-+-. .- .-....++++.+||++....
T Consensus 33 E~~~Y~~~tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 33 EGEGYGKLTRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred hhhcccccchHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345555533 67889999999999876531 11 22344678889999988764
No 177
>KOG1472|consensus
Probab=45.93 E-value=5.6 Score=32.60 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=55.6
Q ss_pred EEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcC-ccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 53 IMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKR-AYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 53 ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g-~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+||..+........ ...+..-+|..+.|-+|+|+-++.++.++.+..+ ...+.. -....++..+.+.||...-.
T Consensus 431 ~vggi~~r~f~~k~--f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~lt---yad~~aigyfkkqgfs~ei~ 505 (720)
T KOG1472|consen 431 VVGGICFRPFPEKG--FTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALT---YADEGAIGYFKKQGFSKEIK 505 (720)
T ss_pred cccccccCcCcccC--CcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHH---hhhhcccccccCccchhhcc
Confidence 88888887766532 4567778899999999999999999999998754 222211 22246788889999986544
Q ss_pred EE
Q psy13682 132 VL 133 (175)
Q Consensus 132 ~~ 133 (175)
..
T Consensus 506 ~~ 507 (720)
T KOG1472|consen 506 FE 507 (720)
T ss_pred cc
Confidence 43
No 178
>PRK14968 putative methyltransferase; Provisional
Probab=45.63 E-value=85 Score=20.57 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEe
Q psy13682 90 LMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134 (175)
Q Consensus 90 ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (175)
+++.+...++..|.-.+.......+.....+..+.||+.......
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 455555555544533333322234566789999999987765443
No 179
>PHA00771 head assembly protein
Probab=45.02 E-value=79 Score=19.99 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=45.2
Q ss_pred ECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMR 148 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~ 148 (175)
-+|++||+-- +.-....+|..+ ..+..+...+...-...+-..+-+|.+..|.+.+++.++ .+..++.
T Consensus 69 y~P~fRG~ya--~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~g~--~~vT~Yq 137 (151)
T PHA00771 69 YLPEIRGFSK--EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGV--DDVTFYS 137 (151)
T ss_pred eCccccchhH--HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhcCC--CceEEEE
Confidence 5799998632 555555555554 355555555555556667788889999999999998554 4444443
No 180
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=44.80 E-value=48 Score=20.98 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=20.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
+.++.+.|..- .++.+||++ +||+...+.
T Consensus 7 l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 7 LDHCLLTGEDI-AETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eCEEEEecCCH-HHHHHHHHHhcCCEEEEEE
Confidence 44555655433 689999976 999986654
No 181
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=44.64 E-value=93 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.6
Q ss_pred CccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
++.-+.+.+...|..-..+.+..||+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 33 (194)
T PRK10975 3 AFSLVQAKVAASDTALLDALQQLGFQLVEGE 33 (194)
T ss_pred ccceEEEEechhhhHHHHHHHhcCCEeeeeE
Confidence 4556777788888888999999999976553
No 182
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.41 E-value=48 Score=19.67 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred CccEEEEEEEecCHHHHHHHH-hcCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~ 131 (175)
+..++.+.|.. =.++.+||. .+||+....
T Consensus 3 ~~~hi~l~v~d-~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSD-YEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCC-HHHHHHHHHHhcCCEEeee
Confidence 45667776643 368899998 599997644
No 183
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=43.68 E-value=61 Score=22.01 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHcCccEEEEEEEecC--HHHHHHHHhcCcEEEEE
Q psy13682 86 IAAELMSWLEDISEKKRAYFVDLFVRVSN--TVAITMYKRLGYIVYRT 131 (175)
Q Consensus 86 ig~~ll~~~~~~~~~~g~~~i~~~~~~~n--~~~~~~y~k~Gf~~~~~ 131 (175)
.--++++.+.+.+++.|...+.+.-.... ....+.++..||.....
T Consensus 20 T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 20 THPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 34579999999999999987666543333 46788999999987643
No 184
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=43.68 E-value=56 Score=19.68 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=19.5
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+..+.+.|.. =..+.+||++ +||+....
T Consensus 2 i~hv~l~v~d-~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSD-LERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECC-HHHHHHHHHHhcCCEEEEe
Confidence 4556665533 2588999985 99988654
No 185
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=43.32 E-value=53 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=20.1
Q ss_pred ccEEEEEEEecCHHHHHHHHhc----CcEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKRL----GYIVYRTV 132 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k~----Gf~~~~~~ 132 (175)
+.++.+.|. +=.++.+||++. ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 455666553 336889999886 99987653
No 186
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=43.25 E-value=18 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCcEEEE
Q psy13682 115 TVAITMYKRLGYIVYR 130 (175)
Q Consensus 115 ~~~~~~y~k~Gf~~~~ 130 (175)
.+|.+||.++||+.-.
T Consensus 15 ~~S~~Fy~alGfk~Np 30 (133)
T COG3607 15 EASKAFYTALGFKFNP 30 (133)
T ss_pred HHHHHHHHHhCcccCC
Confidence 5889999999999753
No 187
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=43.20 E-value=45 Score=21.59 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=20.5
Q ss_pred CccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
|+.++.+.|..- ..+.+||++ +||+.....
T Consensus 1 gl~HI~i~V~Dl-e~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 1 GLHGVTLTVRDP-EATAAFLTDVLGFREVGEE 31 (157)
T ss_pred CcccEEEEeCCH-HHHHHHHHHhcCCEEEeee
Confidence 345566655433 689999975 699987654
No 188
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=42.91 E-value=10 Score=15.97 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=8.8
Q ss_pred EeeCCcccHHHHHhc
Q psy13682 4 LRAFTCDDMFKFNNV 18 (175)
Q Consensus 4 ir~~~~~d~~~l~~l 18 (175)
+-|++++|++++.++
T Consensus 7 mmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 7 MMPMSPDDYDELERM 21 (23)
T ss_dssp ---S-HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHh
Confidence 457889999887764
No 189
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=42.62 E-value=15 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=22.9
Q ss_pred cCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 101 KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 101 ~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
.|+..|...+.. -.....+++++||+..++.+
T Consensus 8 ~G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~hr 39 (139)
T PF14696_consen 8 DGFDFVEFAVPD-AQALAQLFTALGFQPVARHR 39 (139)
T ss_dssp EEEEEEEEE-SS-TTSCHHHHCCCCEEEECCEC
T ss_pred CCeEEEEEecCC-HHHHHHHHHHhCcceEEecC
Confidence 466777776554 35667889999999998753
No 190
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=42.33 E-value=40 Score=20.33 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=18.7
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+..+.+.|..- .+|.+||.. +||+....
T Consensus 3 l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 34555655433 588999976 89987543
No 191
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=42.08 E-value=56 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=21.7
Q ss_pred cCccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 101 KRAYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 101 ~g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
.++.++.+.|. +=.++.+||+. +||+....
T Consensus 8 ~~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 8 QGLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred CccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 45667777664 33688999976 99997654
No 192
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=41.87 E-value=48 Score=19.54 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=19.4
Q ss_pred cEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
..+.+.+. +=.++.+||.+ +||+.....
T Consensus 4 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 4 AYAELEVP-DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred eEEEEecC-CHHHHHHHHHhccCcEEEeec
Confidence 34445433 23689999998 999988654
No 193
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=40.74 E-value=13 Score=21.23 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 89 ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 89 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
.|++.+.+.-+...--.+++++.+.|..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455555555554333457889999999998888754
No 194
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.99 E-value=50 Score=19.67 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=18.5
Q ss_pred cEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
.++.+.|..- .++.+||++ +||+....
T Consensus 3 ~Hi~l~v~dl-~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 3 EHVAIWTKDL-ERMKAFYVTYFGATSNEK 30 (125)
T ss_pred eEEEEEecCH-HHHHHHHHHHhCCEeece
Confidence 3455655433 689999987 79987544
No 195
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=39.97 E-value=1.2e+02 Score=20.82 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=40.0
Q ss_pred hHHHHHHHh--cCCcEEEEEEcCCCcEEEEEEeEeeCCC-CeeEEEEEE-EEECcchhccChHHHHHHHHHHHHHHcCcc
Q psy13682 29 LSFYMQYLA--HWPEYFQVAESPTGEIMGYIMGKAEGHG-DKWHGHVTA-LTVAPDYRRLGIAAELMSWLEDISEKKRAY 104 (175)
Q Consensus 29 ~~~~~~~~~--~~~~~~~v~~~~~~~ivG~~~~~~~~~~-~~~~~~i~~-~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~ 104 (175)
...+...+. .......+..+++|++.||+.+...... ......+.. ++.+++.+ +.|+.++..+. ..+.
T Consensus 10 ~~~w~~~~~~~~~~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A~-----~aLl~fl~~h~--~~~~ 82 (218)
T PF13530_consen 10 EAWWRRLLREREKDRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEAY-----RALLAFLASHR--DQVD 82 (218)
T ss_dssp HHHHHHHCHTTCCGSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHHH-----HHHHHHHHTCC--TTES
T ss_pred HHHHHHHhhcccCCceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHHH-----HHHHHHHHhhh--Ccce
Confidence 344555552 2234555555558999999999888721 111344543 55566532 34555554432 2355
Q ss_pred EEEEE
Q psy13682 105 FVDLF 109 (175)
Q Consensus 105 ~i~~~ 109 (175)
.+.+.
T Consensus 83 ~v~~~ 87 (218)
T PF13530_consen 83 EVEWN 87 (218)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66664
No 196
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=39.94 E-value=13 Score=20.19 Aligned_cols=13 Identities=54% Similarity=0.715 Sum_probs=9.8
Q ss_pred CcchhccChHHHH
Q psy13682 78 APDYRRLGIAAEL 90 (175)
Q Consensus 78 ~~~~rg~Gig~~l 90 (175)
+|+||++.+++.|
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 6888888887644
No 197
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=39.15 E-value=48 Score=21.04 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=21.0
Q ss_pred cCccEEEEEEEecCHHHHHHHH-hcCcEEEEE
Q psy13682 101 KRAYFVDLFVRVSNTVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 101 ~g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~ 131 (175)
.++.++.+.|..- .+|.+||. .+||+....
T Consensus 16 ~~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 16 RRLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred ceEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 3455666665433 68999997 499988654
No 198
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=38.26 E-value=80 Score=18.16 Aligned_cols=36 Identities=6% Similarity=-0.052 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhc
Q psy13682 89 ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRL 124 (175)
Q Consensus 89 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~ 124 (175)
.++...+.+..+.|+.++++....+...+..+.++.
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 345666667778899999987666666677777665
No 199
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=37.94 E-value=1.2e+02 Score=20.84 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=38.5
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEe
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (175)
.+.-.+++|.-|+|.+++. ..|++.+.+- .+|+.-+.-.+..|-++..+.+.
T Consensus 119 ~lg~~~D~R~ygigAqIL~-------dLGI~~irLL--tnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 119 ALGFPADERDYGIGAQILK-------DLGIKKIRLL--TNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hhcCCchHHHHHHHHHHHH-------HcCCcEEEEe--cCChHHHHHHHhCCceEEEEeec
Confidence 4556788999999998875 4689998875 34776777777888777766544
No 200
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=37.67 E-value=1.1e+02 Score=19.58 Aligned_cols=59 Identities=10% Similarity=-0.011 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEec
Q psy13682 85 GIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKA 150 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~ 150 (175)
++-..=++.+++++++.|.. +.+-.++.+..++.++-|+.+..-...+ +| ...+.+.++
T Consensus 19 ~~v~~~~r~ml~~ak~~g~~---~pvc~D~~A~~k~lkr~gv~~~egl~t~--~G--~~fY~Ys~~ 77 (142)
T PF11633_consen 19 GVVSWNFRAMLQHAKETGLL---CPVCIDYPAFCKTLKRKGVDPKEGLQTV--DG--VQFYFYSSK 77 (142)
T ss_dssp CEE---CHHHHHHHHHHT-E---EEEETT-HHHHHHHHHTTS---SEEEES---S--SEEEEE-TT
T ss_pred eeeehhHHHHHHHHHhcCcE---EEEEeccHHHHHHHhccCcccccceEEe--cc--eEEEEEecC
Confidence 33334456677788887765 3344788999999999888876554332 22 445555543
No 201
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=37.17 E-value=46 Score=19.28 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.4
Q ss_pred HHHHHHHHh-cCcEEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~~ 132 (175)
..+.+||++ +||+.....
T Consensus 7 ~~a~~FY~~~lg~~~~~~~ 25 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDD 25 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 588999998 999998853
No 202
>PLN02300 lactoylglutathione lyase
Probab=37.11 E-value=44 Score=24.07 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=24.9
Q ss_pred HHHHHHHHH--cCccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 92 SWLEDISEK--KRAYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 92 ~~~~~~~~~--~g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+.+++|.+. .++.++.+.|..- .+|++||++ +||+....
T Consensus 12 ~~~~~~~~~~i~~l~Hv~l~V~Dl-e~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 12 EDLLEWPKKDKRRMLHVVYRVGDL-DRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhhcCCccccceEEEEEEEeCCH-HHHHHHHHHhcCCEEEEe
Confidence 344555432 3456666655433 589999976 89998754
No 203
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=36.65 E-value=80 Score=19.27 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=19.0
Q ss_pred cEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
.++.+.+..- .++.+||.+ +||+.....
T Consensus 3 ~hv~l~v~D~-~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 3 SHVVLYVRDL-EAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred eEEEEEecCH-HHHHHHHHHhcCCEEEeec
Confidence 3455544333 588999987 999987553
No 204
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=36.62 E-value=60 Score=21.01 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=19.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+.++.+.|.. =.+|.+||.+ +||+....
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~~ 32 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSEY 32 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEEE
Confidence 4455565533 2688999987 89987643
No 205
>PRK11478 putative lyase; Provisional
Probab=36.22 E-value=46 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=18.2
Q ss_pred ccEEEEEEEecCHHHHHHHH-hcCcEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYK-RLGYIVYR 130 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~ 130 (175)
..++.+.|.. =.++.+||. .+||+...
T Consensus 7 i~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIATD-YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEcCC-HHHHHHHHHHHhCCEecc
Confidence 4555565533 358899996 48999753
No 206
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.57 E-value=67 Score=19.22 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=20.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 132 (175)
+.++.+.|..- .++.+||.+ +||+.....
T Consensus 3 i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 3 IGAVTLRVADL-ERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEECCH-HHHHHHHHhccCcEEEEcC
Confidence 34555655333 588999986 899998663
No 207
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=35.13 E-value=67 Score=18.91 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=20.8
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRTVL 133 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~~ 133 (175)
..++.+.|.. =.+|+.||.. +||+......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 3445555443 3689999997 9999987643
No 208
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=34.90 E-value=44 Score=19.67 Aligned_cols=34 Identities=24% Similarity=0.127 Sum_probs=22.1
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDL 108 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~ 108 (175)
-+++||+--|.-++..+++.+....... ..++++
T Consensus 64 iiatD~D~EGe~Ia~~i~~~~~~~~~~~-~~R~~~ 97 (100)
T PF01751_consen 64 IIATDPDREGELIAWEIIELLGKNNPKL-IKRVWF 97 (100)
T ss_dssp EEEC-SSHHHHHHHHHHHHHHHHHSHHH-TTEEEE
T ss_pred eecCCCChHHHHHHHHHHHHHhHhCCCc-CCEEEE
Confidence 4777888888877777777666665443 455544
No 209
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=34.31 E-value=1.5e+02 Score=20.99 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEee
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 135 (175)
|+-|+.+..+.+.+.|..++.+ ..+++.-....+++|++..=+..+.
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvV--ATDde~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVV--ATDDERIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCEEEecCCCC
Confidence 4567778888887777777554 3555666666777777766554443
No 210
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=34.29 E-value=90 Score=19.34 Aligned_cols=20 Identities=10% Similarity=0.193 Sum_probs=13.1
Q ss_pred EEEEEcCCCcEEEEEEeEee
Q psy13682 43 FQVAESPTGEIMGYIMGKAE 62 (175)
Q Consensus 43 ~~v~~~~~~~ivG~~~~~~~ 62 (175)
.+++.+++|+++|..++...
T Consensus 86 T~~Ird~~g~~iG~LCIN~D 105 (118)
T PF08348_consen 86 TFFIRDENGKLIGALCINFD 105 (118)
T ss_pred EEEEECCCCCEEEEEEEEec
Confidence 44555556788888877653
No 211
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.13 E-value=74 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.9
Q ss_pred HHHHHHHHh-cCcEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~ 131 (175)
.+|++||.+ +||+....
T Consensus 11 ~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 11 EAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHhcCCEEeec
Confidence 688999985 89998654
No 212
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.06 E-value=78 Score=22.32 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=29.5
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|...+..++++|.+.|++.+.+.+..
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5667888899999999999999999999887654
No 213
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.04 E-value=87 Score=18.66 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=16.5
Q ss_pred EEEEEEecCHHHHHHHHh-cCcEEEE
Q psy13682 106 VDLFVRVSNTVAITMYKR-LGYIVYR 130 (175)
Q Consensus 106 i~~~~~~~n~~~~~~y~k-~Gf~~~~ 130 (175)
+.+.|. +=.++.+||.+ +||....
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 344443 33689999987 7998753
No 214
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=33.98 E-value=80 Score=22.19 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=29.5
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|...+..++++|.+.|++.+.+.+..
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5667888899999999999999999999887654
No 215
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=33.92 E-value=1.7e+02 Score=20.72 Aligned_cols=105 Identities=13% Similarity=0.025 Sum_probs=59.6
Q ss_pred ccHHHHHhcccCcc---ccccChHHHHH----HHhcCCcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcc--
Q psy13682 10 DDMFKFNNVNLDPL---TETYGLSFYMQ----YLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPD-- 80 (175)
Q Consensus 10 ~d~~~l~~l~~~~~---~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~-- 80 (175)
.+++++.+-+...- ..+|-.+.+.+ ..+..-...+=+.. +|++||-....... +++.-++
T Consensus 90 ~aF~~Vi~~Ca~~~~~~~~TWI~~e~~~aY~~LH~~G~AHSVE~W~-~~~LvGGlYGv~iG----------~~F~GESMF 158 (233)
T PRK00301 90 TAFAAVIRACAAPRPGQEGTWITPEIIEAYLELHELGHAHSVEVWQ-GGELVGGLYGVALG----------RAFFGESMF 158 (233)
T ss_pred ccHHHHHHHHccCCCCCCCCCCCHHHHHHHHHHHHcCceEEEEEEE-CCEEEeeeeccccC----------CEEeecccc
Confidence 45666666554321 33454433332 22333334444555 89999886544332 2222222
Q ss_pred hhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 81 YRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
++...-++..+-++.++++..|+.- ++|...|+. .+++|-+.+.+
T Consensus 159 s~~~nASKvAl~~L~~~L~~~g~~l--iD~Q~~t~H----L~slGa~~i~R 203 (233)
T PRK00301 159 SRATDASKVALAALVEHLRRHGFKL--IDCQVLNPH----LASLGAREIPR 203 (233)
T ss_pred cCCCChHHHHHHHHHHHHHHCCceE--EEECCCCHH----HHhcCCEEcCH
Confidence 2335677888999999999999875 444444432 56788887755
No 216
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.58 E-value=2.1e+02 Score=21.67 Aligned_cols=86 Identities=9% Similarity=0.034 Sum_probs=53.6
Q ss_pred EEEEEEcCCCcEEEEEEeEeeCCCCeeEEE-----------------------------EEEEEECcchhccChHHHHHH
Q psy13682 42 YFQVAESPTGEIMGYIMGKAEGHGDKWHGH-----------------------------VTALTVAPDYRRLGIAAELMS 92 (175)
Q Consensus 42 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~-----------------------------i~~~~V~~~~rg~Gig~~ll~ 92 (175)
..+...+..|.++|.+-++......+-.+. =-.+-+++..-..-+...|+.
T Consensus 59 ~HLtl~d~~~~L~ga~p~YlK~HS~GEyVFDh~WAda~eraG~~YYPKll~~vPFTPvtG~RlL~~~~~d~~~~~~~L~~ 138 (387)
T COG3146 59 QHLTLWDAQGTLVGAAPLYLKSHSYGEYVFDHGWADAYERAGGRYYPKLLCAVPFTPVTGPRLLARDGEDEEEVRQALLA 138 (387)
T ss_pred eeeEEecCCCcchhhhhhhhhcccCceeeeccHHHHHHHHhcccccchhhcCCCCCCCCCceeecCccccHHHHHHHHHH
Confidence 445556657899998876655432111000 012445554444456677888
Q ss_pred HHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 93 WLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 93 ~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.+.+.+.+.|++.+.+.- ....-....++.||...
T Consensus 139 ~l~~~~~~~glSS~Hv~F--~~~~~~~~l~~~Gfl~r 173 (387)
T COG3146 139 GLDELCEQSGLSSAHVTF--VDEDEQPALEKAGFLHR 173 (387)
T ss_pred HHHHHHHhcCCCceeEec--CCHHHHHHHHhccchhh
Confidence 889999999999866543 33456778888899754
No 217
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=33.39 E-value=85 Score=19.33 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=20.2
Q ss_pred CccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
++..+.+.|. +-..+.+||++ +||....+
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4566666653 44688999976 99977544
No 218
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=32.81 E-value=85 Score=21.89 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=27.6
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|..-|..-+..+.+++.+.|++.+.+.+..
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS 48 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFS 48 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3456677788899999999999999999988765
No 219
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.95 E-value=65 Score=18.81 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.1
Q ss_pred HHHHHHHHh-cCcEEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~~ 132 (175)
.++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 588999998 999988664
No 220
>KOG3008|consensus
Probab=31.77 E-value=1.1e+02 Score=21.58 Aligned_cols=67 Identities=16% Similarity=0.013 Sum_probs=46.9
Q ss_pred chhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEeeccCCCCcceeEEEeccc
Q psy13682 80 DYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALS 152 (175)
Q Consensus 80 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~ 152 (175)
-.|-.||++ +...+.+.++..|.+...+.+..+ .+..++.+|.+.-+-|-....|. ....+|.|+-.
T Consensus 110 l~R~SGIAT-a~~~~~~aAr~~g~~g~IagTRKT-tPGLRlveKy~~LvGG~~~HRyd----L~~MVMiKDNH 176 (300)
T KOG3008|consen 110 LARCSGIAT-AAAAAVEAARGAGWTGHIAGTRKT-TPGLRLVEKYGLLVGGAASHRYD----LGGMVMVKDNH 176 (300)
T ss_pred HHHhccHHH-HHHHHHHHHhcCCCcceecccccC-CcchhhhhhhceeeccccccccC----ccceEEEecCc
Confidence 357788888 455677788888888877877776 46688999999877665544333 23467777653
No 221
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.65 E-value=2.1e+02 Score=20.90 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecC-----------HHHHHHHHhcCcEEEEEEEeeccC
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSN-----------TVAITMYKRLGYIVYRTVLEYYSG 138 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n-----------~~~~~~y~k~Gf~~~~~~~~~~~~ 138 (175)
...-+..+.++++++|+.. .+.+.... ....+.|++.|-.-++. +|...
T Consensus 71 ~~~dl~elv~Ya~~KgVgi-~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKi--dF~~~ 130 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGI-WLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKI--DFMDR 130 (273)
T ss_dssp TT--HHHHHHHHHHTT-EE-EEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEE--E--SS
T ss_pred CccCHHHHHHHHHHcCCCE-EEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEee--CcCCC
Confidence 3456788888888888763 44444433 56778888888766654 45443
No 222
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=31.37 E-value=1.5e+02 Score=19.33 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=37.7
Q ss_pred ccChHH-HHHHHHHHHHHHcCccEEEEEE-----------EecCHHHHHHHHhcCcEEEEE
Q psy13682 83 RLGIAA-ELMSWLEDISEKKRAYFVDLFV-----------RVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 83 g~Gig~-~ll~~~~~~~~~~g~~~i~~~~-----------~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
+.-++. .+.+.+.+.+.++|++.+.+.+ -..-..+++-..+.|+++...
T Consensus 69 sTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I 129 (149)
T PTZ00129 69 SSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRI 129 (149)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 334544 4567788888889999999888 245578999999999998765
No 223
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=31.12 E-value=69 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=19.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+.++.+.|.. =..+.+||.+ +||+....
T Consensus 5 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 4455565533 3588999987 99987643
No 224
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=31.02 E-value=51 Score=19.37 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.5
Q ss_pred HHHHHHHHh-cCcEEEE
Q psy13682 115 TVAITMYKR-LGYIVYR 130 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~ 130 (175)
..+..||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 588999997 9999763
No 225
>PRK07758 hypothetical protein; Provisional
Probab=30.99 E-value=59 Score=19.36 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=18.1
Q ss_pred ccChHHHHHHHHHHHHHHcCcc
Q psy13682 83 RLGIAAELMSWLEDISEKKRAY 104 (175)
Q Consensus 83 g~Gig~~ll~~~~~~~~~~g~~ 104 (175)
=+|+|..-++.+.+.+.+.|..
T Consensus 72 iknlGkKSL~EIkekL~E~GLs 93 (95)
T PRK07758 72 LHGMGPASLPKLRKALEESGLS 93 (95)
T ss_pred ccCCCHHHHHHHHHHHHHcCCC
Confidence 4789999999999998887753
No 226
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=30.91 E-value=37 Score=21.42 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred EEECcchhccChHHHHHHHHHH
Q psy13682 75 LTVAPDYRRLGIAAELMSWLED 96 (175)
Q Consensus 75 ~~V~~~~rg~Gig~~ll~~~~~ 96 (175)
+.+||+++|.-+.+.|.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 6789999999999999887766
No 227
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=30.67 E-value=51 Score=19.75 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=19.3
Q ss_pred cEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
.++.+.|. +=.++.+||.+ +||+....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCccc
Confidence 34566653 33588999987 99998754
No 228
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.43 E-value=64 Score=19.64 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=17.9
Q ss_pred cEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 104 YFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 104 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
..+.+.|. +=.+|.+||.+ +||+....
T Consensus 8 ~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 8 AYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 34555443 23589999987 79997544
No 229
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=30.16 E-value=77 Score=19.49 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=26.4
Q ss_pred cChHHHHHHHHHHHHHHcCccEE---EEEEEe---cCHHHHHHHHh
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFV---DLFVRV---SNTVAITMYKR 123 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i---~~~~~~---~n~~~~~~y~k 123 (175)
.++...+++.+.+.++++|.+++ .+.+.. -++.+.+|+-.
T Consensus 4 ~si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f~f~ 49 (114)
T PRK03681 4 ITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFD 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCccccCHHHHHHHHH
Confidence 36788999999999998876544 444322 23566666544
No 230
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=30.08 E-value=1.3e+02 Score=18.07 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=32.9
Q ss_pred EEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCH
Q psy13682 69 HGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNT 115 (175)
Q Consensus 69 ~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 115 (175)
.+.+..+.|..+-++.|++..+...+.+.. ..+...+..+|+
T Consensus 33 vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~-----p~L~W~~r~~n~ 74 (98)
T cd04263 33 VATLATFTITKSGWLNNVADNIFTAIKKDH-----PKLVWTVREDDE 74 (98)
T ss_pred CEEEEEEEEccccccccHHHHHHHHHHhhC-----CeeEEEeCCCCC
Confidence 578989999999999999999988776553 356666766664
No 231
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.84 E-value=1.6e+02 Score=22.66 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=33.2
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
..+++|.-|+|.++++ ..|++.+.+- .+|+.-..-.+.+|.++.++.+
T Consensus 309 ~~~D~RdygigAqIL~-------dLGV~~irLL--TNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 309 FKEDERDYAAAFQILK-------ALGIEKVRLL--TNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CCccceeeeHHHHHHH-------HcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEec
Confidence 3455666666666654 4688887764 4567667778899999987754
No 232
>PRK10291 glyoxalase I; Provisional
Probab=29.82 E-value=74 Score=19.39 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.0
Q ss_pred HHHHHHHHh-cCcEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~ 131 (175)
.+|+.||++ +||+....
T Consensus 8 e~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 689999976 99988654
No 233
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=29.79 E-value=3.7e+02 Score=23.22 Aligned_cols=79 Identities=9% Similarity=-0.007 Sum_probs=57.7
Q ss_pred EEEEEeEeeCCC---CeeEEEEEEEEECcch--hccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 54 MGYIMGKAEGHG---DKWHGHVTALTVAPDY--RRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 54 vG~~~~~~~~~~---~~~~~~i~~~~V~~~~--rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
||+=.+...... .+....+.++.-+++. +|++....++..-+..+++.|+..|+..=...++.-..+.-++|+-+
T Consensus 281 iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV 360 (808)
T COG3250 281 IGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLV 360 (808)
T ss_pred eccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEE
Confidence 566555554433 3335677788887774 56666678888899999999999999875556666777778999988
Q ss_pred EEEE
Q psy13682 129 YRTV 132 (175)
Q Consensus 129 ~~~~ 132 (175)
....
T Consensus 361 ~~Ea 364 (808)
T COG3250 361 IDEA 364 (808)
T ss_pred EEec
Confidence 8764
No 234
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=29.78 E-value=69 Score=18.59 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.2
Q ss_pred HHHHHHHHh-cCcEEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRTV 132 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~~ 132 (175)
..+.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 589999999 999987654
No 235
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=29.43 E-value=1.5e+02 Score=18.47 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHHHcCcc---EEEEEEE---ecCHHHHHHH
Q psy13682 85 GIAAELMSWLEDISEKKRAY---FVDLFVR---VSNTVAITMY 121 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~~g~~---~i~~~~~---~~n~~~~~~y 121 (175)
.++.++++.++++|+++|.. .+++.+. .-|+.+.+|.
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 47889999999999998875 4444432 2456666664
No 236
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.42 E-value=4.1e+02 Score=23.65 Aligned_cols=80 Identities=9% Similarity=-0.004 Sum_probs=54.2
Q ss_pred EEEEEEeEeeCCC---CeeEEEEEEEEECcchhccCh--HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcE
Q psy13682 53 IMGYIMGKAEGHG---DKWHGHVTALTVAPDYRRLGI--AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYI 127 (175)
Q Consensus 53 ivG~~~~~~~~~~---~~~~~~i~~~~V~~~~rg~Gi--g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~ 127 (175)
-+|+-.+...... .+....+.++.-++.+-..|. ..+.+..-++.+++.|+..|++.-.+.++.-..+.-++|+-
T Consensus 314 ~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~Gll 393 (1021)
T PRK10340 314 RVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLF 393 (1021)
T ss_pred eeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCE
Confidence 3566655554322 233456777776776655554 46778888899999999999986544445556667799998
Q ss_pred EEEEE
Q psy13682 128 VYRTV 132 (175)
Q Consensus 128 ~~~~~ 132 (175)
+..+.
T Consensus 394 V~dE~ 398 (1021)
T PRK10340 394 VMAET 398 (1021)
T ss_pred EEECC
Confidence 87663
No 237
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=29.37 E-value=62 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=31.8
Q ss_pred cChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEE
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYR 130 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 130 (175)
+|||.+-...++=++..+.. + .-+.-+.+++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp~----F---VvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRPV----F---VVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCcc----c---chhHHHHHHHHHhcccccc
Confidence 79999999999999976321 2 2337889999999998874
No 238
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.17 E-value=96 Score=18.52 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=18.0
Q ss_pred EEEEEEEecCHHHHHHHHh----cCcEEEEEE
Q psy13682 105 FVDLFVRVSNTVAITMYKR----LGYIVYRTV 132 (175)
Q Consensus 105 ~i~~~~~~~n~~~~~~y~k----~Gf~~~~~~ 132 (175)
++.+.| .+=.++.+||++ +||......
T Consensus 3 hv~l~v-~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGV-NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEec-CcHHHHHHHHHHHHhhcCceEEeec
Confidence 344544 233588999998 599986543
No 239
>PRK14689 hypothetical protein; Provisional
Probab=29.08 E-value=1.5e+02 Score=18.62 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCcEEEEEE
Q psy13682 115 TVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 115 ~~~~~~y~k~Gf~~~~~~ 132 (175)
..|..++++.||++..+.
T Consensus 16 ~~Aa~~L~~~Gy~Il~rN 33 (124)
T PRK14689 16 ERVLRLLQRRGWRLLDRN 33 (124)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 467889999999999874
No 240
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.07 E-value=95 Score=21.89 Aligned_cols=34 Identities=6% Similarity=-0.097 Sum_probs=28.7
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|+-.|..-+..+++++.+.|++.+.+.+..
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS 47 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 47 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4566777899999999999999999999887654
No 241
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.91 E-value=84 Score=22.46 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=29.4
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.-.|...+..+++++.+.|++.+.+.+..
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777899999999999999999999988765
No 242
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=28.83 E-value=83 Score=25.42 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=26.0
Q ss_pred HHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEEe
Q psy13682 99 EKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLE 134 (175)
Q Consensus 99 ~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 134 (175)
+..|++++.+- .+|+.-+.-.+.+|.++.++.+-
T Consensus 347 ~dLGI~kIrLL--TNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 347 NDLGIKRLRLI--TNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEecc
Confidence 35788887775 45777788888999999988754
No 243
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=1.1e+02 Score=19.76 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=23.5
Q ss_pred ccChHHHHHHHhc--CCcEEEEEEcCCCcEEEEEEeEeeCC
Q psy13682 26 TYGLSFYMQYLAH--WPEYFQVAESPTGEIMGYIMGKAEGH 64 (175)
Q Consensus 26 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~ivG~~~~~~~~~ 64 (175)
.+...++...+-. ..+.+.+..+++|++|||++....+.
T Consensus 35 ~~pV~e~~~~iLPalk~~Qf~ly~de~g~Piaf~~WA~vde 75 (148)
T COG2994 35 HYPVAEISRNILPALKLGQFALYFDEHGRPIAFCTWAFVDE 75 (148)
T ss_pred hccHHHHHHHHhHHHhcCceEEEEcCCCCeeEEEEEeecCH
Confidence 4445554444421 13455555556899999999876653
No 244
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=28.69 E-value=1.1e+02 Score=18.29 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=19.1
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+..+.+.|.. =.++.+||.+ +||+...+
T Consensus 7 i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 7 LAHVELLTPK-PEESLWFFTDVLGLEETGR 35 (121)
T ss_pred eeEEEEEeCC-HHHHHHHHHhCcCCEEEee
Confidence 4455555432 2688999987 69998765
No 245
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.36 E-value=1.2e+02 Score=21.71 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCccEEEEEEEe------cCHHHHHHHHhcCcEEEEEEE
Q psy13682 90 LMSWLEDISEKKRAYFVDLFVRV------SNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 90 ll~~~~~~~~~~g~~~i~~~~~~------~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
-+...++++++.|+..|.+.... .-...++...+.||++..+.-
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 45677888999999999886322 113567888999999987753
No 246
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.35 E-value=1.1e+02 Score=21.79 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=29.2
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|..-+..++++|.+.|++.+.+.+..
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS 62 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567777899999999999999999999887654
No 247
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=28.31 E-value=1.3e+02 Score=17.73 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=16.6
Q ss_pred ccChHHHHH--HHHHHHHHHcCcc
Q psy13682 83 RLGIAAELM--SWLEDISEKKRAY 104 (175)
Q Consensus 83 g~Gig~~ll--~~~~~~~~~~g~~ 104 (175)
|.|+|+.++ ..+++.++++|+.
T Consensus 9 G~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 9 GNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCC
Confidence 678888665 4578888888886
No 248
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=28.30 E-value=71 Score=14.53 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=14.6
Q ss_pred HHHHHHhcCCcEEEEEEcCCCcEEEEEEe
Q psy13682 31 FYMQYLAHWPEYFQVAESPTGEIMGYIMG 59 (175)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~ivG~~~~ 59 (175)
.....+.......+.+.+.+++++|++..
T Consensus 13 ~~~~~~~~~~~~~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 13 EALELLREHGIRRLPVVDEEGRLVGIVTR 41 (49)
T ss_pred HHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence 33334433232333333436888998764
No 249
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.23 E-value=96 Score=22.07 Aligned_cols=33 Identities=3% Similarity=-0.068 Sum_probs=29.0
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEE
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVR 111 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 111 (175)
+...|.--|...+..+++++.+.|++.+.+.+.
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 556677789999999999999999999988876
No 250
>PRK06724 hypothetical protein; Provisional
Probab=28.19 E-value=1.3e+02 Score=18.58 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=20.8
Q ss_pred CccEEEEEEEecCHHHHHHHHh----cCcEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYKR----LGYIVYR 130 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~k----~Gf~~~~ 130 (175)
++.++.+.|..- .+|.+||++ +||+...
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~~ 38 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKLN 38 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEee
Confidence 567777776444 688999997 6888753
No 251
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.88 E-value=1e+02 Score=22.07 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=29.2
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|...+..+++++.+.|++.+.+.+..
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5667777899999999999999999998887654
No 252
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.66 E-value=1.1e+02 Score=21.66 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=29.2
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|...+..+.+++.+.|++.+.+.+..
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS 57 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFS 57 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 5566777899999999999999999999887654
No 253
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=27.64 E-value=1.1e+02 Score=21.35 Aligned_cols=34 Identities=12% Similarity=-0.080 Sum_probs=29.0
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|.--|...+..+.+++.+.|++.+.+.+..
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5567777899999999999999999999887654
No 254
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=27.24 E-value=14 Score=25.01 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE-EeeccCCC-CcceeEEEecc
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV-LEYYSGSP-DEDAYDMRKAL 151 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~-~~~~~~~~-~~~~~~m~~~l 151 (175)
-++++--.|.+- .-+..+.+..++.+ .- +..+.++..-.....++||-.++.- ..|..... ..+.+.+.+.|
T Consensus 67 IIAlDaT~R~Rp---~~l~~li~~i~~~~-~l--~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 67 IIALDATDRPRP---ETLEELIREIKEKY-QL--VMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp EEEEE-SSSS-S---S-HHHHHHHHHHCT-SE--EEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCC---cCHHHHHHHHHHhC-cE--EeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 367777777766 66777888888776 33 3444555666677889999999884 33333211 24566666777
Q ss_pred cccCCCCcccccCCCCCCCCC
Q psy13682 152 SRDVHGKSVIPLKQAVRPEDV 172 (175)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~ 172 (175)
... ..|++-.+..++|+++
T Consensus 141 ~~~--~~pvIaEGri~tpe~a 159 (192)
T PF04131_consen 141 VQA--DVPVIAEGRIHTPEQA 159 (192)
T ss_dssp HHT--TSEEEEESS--SHHHH
T ss_pred HhC--CCcEeecCCCCCHHHH
Confidence 653 6678888888888764
No 255
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=27.07 E-value=1.2e+02 Score=18.66 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=18.6
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+..+.+.|.. =..|.+||++ +||+....
T Consensus 4 l~hi~l~v~d-l~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 4 LGHVVLFVPD-VEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eeEEEEEcCC-HHHHHHHHHHhcCCEEEEE
Confidence 3455555432 3588999965 79987655
No 256
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.00 E-value=49 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEECcchhccChHHHHHHHHHH
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLED 96 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~ 96 (175)
-+.++++..|+.+.+++.+.+..
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhcc
Confidence 47789999999998888877644
No 257
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=26.98 E-value=1.1e+02 Score=18.73 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.7
Q ss_pred HHHHHHHHh-cCcEEEEE
Q psy13682 115 TVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 115 ~~~~~~y~k-~Gf~~~~~ 131 (175)
.++.+||.+ +||+....
T Consensus 11 ~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 11 AATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 578999986 89998654
No 258
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=26.91 E-value=2.2e+02 Score=21.58 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.9
Q ss_pred EEEecCHHHHHHHHhcCcEEE
Q psy13682 109 FVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 109 ~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.+...|....+||.++|.+.+
T Consensus 121 q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 121 QANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred eEecCCHHHHHHHHHcCCEEE
Confidence 356789999999999997654
No 259
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=26.84 E-value=19 Score=21.97 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=18.5
Q ss_pred hhccChHHHHHHHHHHHHHHcCc
Q psy13682 81 YRRLGIAAELMSWLEDISEKKRA 103 (175)
Q Consensus 81 ~rg~Gig~~ll~~~~~~~~~~g~ 103 (175)
.|++|+|..|++.+.+..+..|+
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~Gy 50 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLGY 50 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT-
T ss_pred hcccchHHHHHHHHHHHhhhcCC
Confidence 47889999999999999988774
No 260
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.62 E-value=1.1e+02 Score=21.84 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=29.3
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.--|...+..+++++.+.|++.+.+.+..
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567777899999999999999999999887654
No 261
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.41 E-value=1.4e+02 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=28.6
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.--|..-+..+++++.+.|++.+.+.+..
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS 68 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFS 68 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 4456777799999999999999999999888754
No 262
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=26.40 E-value=1.2e+02 Score=19.26 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=21.9
Q ss_pred CcchhccChHHHHHHHHHHHHHHc-CccEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKK-RAYFVDL 108 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~ 108 (175)
-.-|+|+||....++-+-..+... ....|.+
T Consensus 13 mq~y~GkGYS~~FveN~d~I~~rL~~ge~i~l 44 (135)
T COG3543 13 MQGYQGKGYSPAFVENYDAIAERLKAGEDIKL 44 (135)
T ss_pred eeecccccCCHHHHHHHHHHHHHhhcCCCeEE
Confidence 356999999999988877777652 2333554
No 263
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=26.15 E-value=2.4e+02 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=29.8
Q ss_pred cChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcC
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLG 125 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~G 125 (175)
+.+|-++...+.+.+...|+..+++.+........++.+.+|
T Consensus 246 ~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 246 REIGIEIAVELIRELLAEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 345666666666677777889999987666667788888776
No 264
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=25.83 E-value=97 Score=19.72 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 131 (175)
|+-|++++++.+.+.++..|++.+.. ..-...+.+.+.+....
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEe
Confidence 45688999999998888888876543 33344556677766543
No 265
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=25.56 E-value=1.2e+02 Score=22.64 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=29.4
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+-.|...+..+++++.+.|++.+.+.+..
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566888999999999999999999998887644
No 266
>KOG0538|consensus
Probab=25.51 E-value=1.8e+02 Score=21.70 Aligned_cols=49 Identities=16% Similarity=0.003 Sum_probs=31.6
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
.++|.++ +.+...+.+.+.+.|++.+.+.++..--.-+.-=.+++|...
T Consensus 126 QLYvykd-------r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp 174 (363)
T KOG0538|consen 126 QLYVYKD-------RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLP 174 (363)
T ss_pred EEEecCc-------hHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCC
Confidence 5788777 456777777888889999998876543222222334445443
No 267
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.31 E-value=1.6e+02 Score=17.58 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
|-.++..+.+.++.+|..-+.. .-++...+.+++.||..
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~---~~~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLV---GLNPDVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE---SHHHHHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHcCCCh
Confidence 3446677777777777775444 55678888999999863
No 268
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=25.08 E-value=1.9e+02 Score=18.44 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=37.6
Q ss_pred hccChHH-HHHHHHHHHHHHcCccEEEEEEEe-----------cCHHHHHHHHhcCcEEEEE
Q psy13682 82 RRLGIAA-ELMSWLEDISEKKRAYFVDLFVRV-----------SNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 82 rg~Gig~-~ll~~~~~~~~~~g~~~i~~~~~~-----------~n~~~~~~y~k~Gf~~~~~ 131 (175)
++.-++. ...+.+.+.+.++|++.+.+.+.. .-..+++-..+.|+++...
T Consensus 49 K~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I 110 (132)
T PRK09607 49 ESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 110 (132)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEE
Confidence 3344554 456778888889999999888765 3357899999999997755
No 269
>PLN02979 glycolate oxidase
Probab=24.93 E-value=1e+02 Score=23.50 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 89 ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 89 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
.+...+++.+++.|++.+.++++..-..-+.--.++||..
T Consensus 134 ~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~ 173 (366)
T PLN02979 134 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTL 173 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCC
Confidence 3667778888889999999988765443344444667753
No 270
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=24.91 E-value=2.3e+02 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 97 ISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 97 ~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
.++..|++.+.+-+ |+.-..-.+.+|.++..+.
T Consensus 330 IL~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 330 ILRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 33457888888853 5666666778888887654
No 271
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.89 E-value=1.1e+02 Score=18.88 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=25.3
Q ss_pred cChHHHHHHHHHHHHHHcCccE---EEEEEEe---cCHHHHHHHH
Q psy13682 84 LGIAAELMSWLEDISEKKRAYF---VDLFVRV---SNTVAITMYK 122 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~---i~~~~~~---~n~~~~~~y~ 122 (175)
.+|+..+++.+.+.++++|.++ +.+.+.. -++.+.+|.-
T Consensus 4 ~sia~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~faf 48 (115)
T TIGR00100 4 LSLAEAMLEIVEEQAEKHQAKKVTRVTLEIGELSCVNPSQLQFAF 48 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEEEccccccCHHHHHHHH
Confidence 3678899999999998877665 4444332 2345555543
No 272
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.76 E-value=1.4e+02 Score=21.80 Aligned_cols=34 Identities=6% Similarity=-0.155 Sum_probs=28.2
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.--|..-+..+++++.+.|++.+.+.+..
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4456777789999999999999999999887654
No 273
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.63 E-value=1.1e+02 Score=17.90 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=16.6
Q ss_pred ccChHHHHH--HHHHHHHHHcCcc
Q psy13682 83 RLGIAAELM--SWLEDISEKKRAY 104 (175)
Q Consensus 83 g~Gig~~ll--~~~~~~~~~~g~~ 104 (175)
|.|+|+.++ ..+.+.+.++|..
T Consensus 10 gsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 10 GGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CCchhHHHHHHHHHHHHHHHCCCe
Confidence 568987666 6677888888886
No 274
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=24.61 E-value=2.3e+02 Score=19.21 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=33.0
Q ss_pred CcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 78 APDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 78 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
.+++|.-|+|.++|. ..|++.+.+-+ +|+.-..-....|.++.+..
T Consensus 121 ~~d~R~yGiGAQIL~-------dLGV~~~rLLt--n~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADILE-------DLGVKKVRLLT--NNPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHHH-------HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEe
Confidence 456899999998885 57899887743 35545566667787877664
No 275
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=24.60 E-value=1.4e+02 Score=19.42 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.8
Q ss_pred CccEEEEEEEecCHHHHHHHH-hcCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~ 131 (175)
++.++.+.|.. =.++..||. .+||+....
T Consensus 6 ~i~Hi~l~V~D-le~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASD-VDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCC-HHHHHHHHHHccCCEEEEE
Confidence 34455565543 368899997 699987654
No 276
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.44 E-value=1.3e+02 Score=21.41 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=29.1
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.-.|..-+..+++++.+.|++.+.+.+..
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 5567888899999999999999999998887654
No 277
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.32 E-value=1.9e+02 Score=17.97 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=37.9
Q ss_pred hccChHH-HHHHHHHHHHHHcCccEEEEEEEe-----------cCHHHHHHHHhcCcEEEEE
Q psy13682 82 RRLGIAA-ELMSWLEDISEKKRAYFVDLFVRV-----------SNTVAITMYKRLGYIVYRT 131 (175)
Q Consensus 82 rg~Gig~-~ll~~~~~~~~~~g~~~i~~~~~~-----------~n~~~~~~y~k~Gf~~~~~ 131 (175)
++.-++. ...+.+.+.+.++|++.+.+.+.. .-..+++-..+.|+++...
T Consensus 42 k~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I 103 (114)
T TIGR03628 42 ESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 103 (114)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 4445555 456778889999999999888755 3367888899999998754
No 278
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=24.25 E-value=1.6e+02 Score=18.31 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=19.9
Q ss_pred CccEEEEEEEecCHHHHHHHH-hcCcEEEEE
Q psy13682 102 RAYFVDLFVRVSNTVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 102 g~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~~ 131 (175)
++..+.+.|..- .++.+||. .+||+....
T Consensus 4 ~i~hi~L~v~Dl-~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 4 GINHICFSVSNL-EKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred cEEEEEEEecCH-HHHHHHHHhccCCEEEee
Confidence 345666655433 58899995 699998744
No 279
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.17 E-value=1.2e+02 Score=18.04 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=17.0
Q ss_pred EEEEEEEecCHHHHHHHHh-cCcEEEE
Q psy13682 105 FVDLFVRVSNTVAITMYKR-LGYIVYR 130 (175)
Q Consensus 105 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 130 (175)
.+.+.|. +-.+|.+||++ +||+...
T Consensus 5 ~~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 5 NPLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 3444443 34689999985 9998753
No 280
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=24.14 E-value=3.2e+02 Score=20.61 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhc
Q psy13682 40 PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRR 83 (175)
Q Consensus 40 ~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg 83 (175)
.....++....|.+|+++.+... .-+|..+.|.|..|.
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~------v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGV------IEEIYDVAVLPGVRR 318 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCc------eeEEEEEEEecCCCC
Confidence 34556666668999999887543 456889999999875
No 281
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.11 E-value=2.4e+02 Score=19.28 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=29.4
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFV 110 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~ 110 (175)
.+-|+|+|+|..|.++.--.+.....+.-+....+.+
T Consensus 144 hFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~ 180 (196)
T PF04555_consen 144 HFPVDPEFKGASYLKRYEILCERLVQERLYTAACLIT 180 (196)
T ss_pred CCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEE
Confidence 4779999999999999888888888876666655543
No 282
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.97 E-value=1.2e+02 Score=19.03 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=26.0
Q ss_pred cChHHHHHHHHHHHHHHcCccEEE---EEEEe---cCHHHHHHHHh
Q psy13682 84 LGIAAELMSWLEDISEKKRAYFVD---LFVRV---SNTVAITMYKR 123 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~i~---~~~~~---~n~~~~~~y~k 123 (175)
.+|...+++.+.+.++++|.+++. +.+.. -++.+++|+-.
T Consensus 4 ~si~~~il~~v~~~a~~~~~~rV~~V~l~IG~ls~V~pe~L~faf~ 49 (124)
T PRK00762 4 LSMACEIVEAVIDTAEKNNATEVTEVTLEIGRLTMLNPEQLRFMLD 49 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEECCccccCHHHHHHHHH
Confidence 367889999999999987766543 33322 23556665543
No 283
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=23.83 E-value=1.1e+02 Score=23.27 Aligned_cols=40 Identities=18% Similarity=0.012 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 89 ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 89 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
.+.+.+++.+++.|++.|.++|+..-..-+.-=.++||..
T Consensus 128 ~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~ 167 (361)
T cd04736 128 ELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAI 167 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCC
Confidence 3566777788889999999988764433333445667753
No 284
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=23.70 E-value=1.5e+02 Score=22.44 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=26.7
Q ss_pred hccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcC
Q psy13682 82 RRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLG 125 (175)
Q Consensus 82 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~G 125 (175)
-|-|||.+++..+.+.+...+...+.+..... ......|.+.|
T Consensus 10 pGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~-~~G~~~~~~~G 52 (348)
T COG0473 10 PGDGIGPEVMAAALKVLEAAAEFGLDFEFEEA-EVGGEAYDKHG 52 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCceEEEEe-hhhHHHHHHcC
Confidence 37899999999998888764422222322222 33356667766
No 285
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.64 E-value=1.2e+02 Score=22.43 Aligned_cols=33 Identities=3% Similarity=-0.053 Sum_probs=28.6
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEE
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVR 111 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 111 (175)
+...|+-.|...+..++++|.+.|++.+.+...
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaF 120 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 556677779999999999999999999998876
No 286
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.46 E-value=1.3e+02 Score=21.26 Aligned_cols=34 Identities=3% Similarity=-0.063 Sum_probs=28.6
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
|...|+--|...+..+++++.+.|++.+.+.+..
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777899999999999999999998887654
No 287
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=23.34 E-value=1.3e+02 Score=21.04 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=56.3
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE-EeeccCCC--CcceeEEEec
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV-LEYYSGSP--DEDAYDMRKA 150 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~-~~~~~~~~--~~~~~~m~~~ 150 (175)
-++++-..|.+=.| -++.+....+..|+ .+..+.++..-.....++||..+|.. ..|..... ..+.+.+.|.
T Consensus 101 IIA~DaT~R~RP~~--~~~~~i~~~k~~~~---l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~ 175 (229)
T COG3010 101 IIAFDATDRPRPDG--DLEELIARIKYPGQ---LAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQ 175 (229)
T ss_pred EEEeecccCCCCcc--hHHHHHHHhhcCCc---EEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHH
Confidence 48889899988888 55566666444333 35556666666677889999999984 34433121 3556666666
Q ss_pred ccccCCCCcccccCCCCCCC
Q psy13682 151 LSRDVHGKSVIPLKQAVRPE 170 (175)
Q Consensus 151 l~~~~~~~~~~~~~~~~~~~ 170 (175)
+.. ...+++..++..+|+
T Consensus 176 l~~--~~~~vIAEGr~~tP~ 193 (229)
T COG3010 176 LSD--AGCRVIAEGRYNTPE 193 (229)
T ss_pred HHh--CCCeEEeeCCCCCHH
Confidence 655 444555555554443
No 288
>KOG1754|consensus
Probab=22.89 E-value=2.1e+02 Score=18.08 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHHcCccEEEEEEEecCHHH---HHHHHhcCcEEEEEEEeeccCCCCcceeEEEecccccCCCCcccccCCCCCCCCCC
Q psy13682 97 ISEKKRAYFVDLFVRVSNTVA---ITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDVD 173 (175)
Q Consensus 97 ~~~~~g~~~i~~~~~~~n~~~---~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~ 173 (175)
-|...|-..+.+. +..... ..+..|+||.-.-+..+-...+ -....|+.....-..+.+..+++-.|++
T Consensus 16 NA~krGK~qvlir--p~Skvii~FL~vmmkhGyIg~fei~ddhrag------kivv~L~gRlNkcg~IsprfdV~lkdle 87 (130)
T KOG1754|consen 16 NAEKRGKRQVLIR--PSSKVIIRFLTVMMKHGYIGEFEIIDDHRAG------KIVVNLTGRLNKCGVISPRFDVKLKDLE 87 (130)
T ss_pred hHHhcCCceEEec--ccHHHHHHHHHHHHHcCcccceEEecCCccc------eEEEecccccccccccccccccccchHH
Confidence 3444677776664 222333 4456799997665543322222 2223343333345566777777777766
Q ss_pred CC
Q psy13682 174 NY 175 (175)
Q Consensus 174 ~~ 175 (175)
+|
T Consensus 88 k~ 89 (130)
T KOG1754|consen 88 KW 89 (130)
T ss_pred HH
Confidence 54
No 289
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.83 E-value=1.3e+02 Score=18.52 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=25.8
Q ss_pred cChHHHHHHHHHHHHHHcCccE---EEEEEEe---cCHHHHHHHHh
Q psy13682 84 LGIAAELMSWLEDISEKKRAYF---VDLFVRV---SNTVAITMYKR 123 (175)
Q Consensus 84 ~Gig~~ll~~~~~~~~~~g~~~---i~~~~~~---~n~~~~~~y~k 123 (175)
.++...+++.+.+.++++|.++ +.+.+.. -++.+.+|+-.
T Consensus 4 lsi~~~iv~~v~~~a~~~~~~rV~~V~l~iG~ls~v~pe~L~f~f~ 49 (113)
T PRK12380 4 LSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFSFE 49 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCccccCHHHHHHHHH
Confidence 3678889999999998877554 4444322 33566666543
No 290
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=22.74 E-value=2.6e+02 Score=19.10 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=33.9
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
..+++|.-|+|.++++ ..|++.+.+- .+|+.-..-....|.++.+..
T Consensus 123 ~~~d~R~yGiGAQIL~-------dLGV~~mrLL--tn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 123 FAADERDYTLAADMLK-------ALGVKKVRLL--TNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred CCccceehhHHHHHHH-------HcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEe
Confidence 3556999999998875 5799988774 335545555668888887665
No 291
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.71 E-value=1.4e+02 Score=15.89 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=16.4
Q ss_pred ccEEEEEEEecCH-HHHHHHHhcCcEEE
Q psy13682 103 AYFVDLFVRVSNT-VAITMYKRLGYIVY 129 (175)
Q Consensus 103 ~~~i~~~~~~~n~-~~~~~y~k~Gf~~~ 129 (175)
...+.+.+...+. ...+..++.||+..
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 3344555544444 66777788888765
No 292
>PF13289 SIR2_2: SIR2-like domain
Probab=22.60 E-value=2e+02 Score=17.75 Aligned_cols=10 Identities=0% Similarity=-0.174 Sum_probs=4.0
Q ss_pred cEEEEEEEec
Q psy13682 104 YFVDLFVRVS 113 (175)
Q Consensus 104 ~~i~~~~~~~ 113 (175)
.-++++..-.
T Consensus 88 ~~lfiGys~~ 97 (143)
T PF13289_consen 88 TLLFIGYSFN 97 (143)
T ss_pred CEEEEEECCC
Confidence 3344444333
No 293
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.59 E-value=2.3e+02 Score=19.57 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=17.6
Q ss_pred EEecCHHHHHHHHhcCcEEEEEE
Q psy13682 110 VRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 110 ~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
....|..+.+||+.+|+..+-..
T Consensus 45 ~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 45 LNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred ccCCCHHHHHHHHHcCCCEEEEC
Confidence 45688899999999998866443
No 294
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=22.44 E-value=1.8e+02 Score=17.09 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.7
Q ss_pred EEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 105 FVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 105 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
++.+.+. +=.++.+||.+ +||+....
T Consensus 3 hv~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 3 HTMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred eEEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 3445443 33688999986 69998765
No 295
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=22.06 E-value=2.7e+02 Score=21.36 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=21.2
Q ss_pred HHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEE
Q psy13682 97 ISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTV 132 (175)
Q Consensus 97 ~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 132 (175)
.++..|++++.+- +|+.-..-.+..|.++.++.
T Consensus 333 ILr~LGV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 333 ILQDLGVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHcCCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 3345788887774 45555555667777777554
No 296
>KOG4039|consensus
Probab=22.00 E-value=1.5e+02 Score=20.29 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=37.3
Q ss_pred CCcEEEEEEeEeeCCCCeeEEEEEEEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEe-cCHHHHHHHHhcCcE
Q psy13682 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV-SNTVAITMYKRLGYI 127 (175)
Q Consensus 50 ~~~ivG~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~-~n~~~~~~y~k~Gf~ 127 (175)
.|.=|+||.+...... .+.-..+-|+.+| .-.+.+.+++.||+.+.+-... .++.|.=+|.|.--+
T Consensus 82 qg~dV~FcaLgTTRgk---aGadgfykvDhDy---------vl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGE 148 (238)
T KOG4039|consen 82 QGPDVLFCALGTTRGK---AGADGFYKVDHDY---------VLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGE 148 (238)
T ss_pred cCCceEEEeecccccc---cccCceEeechHH---------HHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccch
Confidence 3455677776655443 1222234455554 4566778888999998875443 334444455554333
No 297
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=21.96 E-value=5.8e+02 Score=22.82 Aligned_cols=79 Identities=10% Similarity=-0.038 Sum_probs=55.7
Q ss_pred EEEEEeEeeCCC---CeeEEEEEEEEECcchh--ccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 54 MGYIMGKAEGHG---DKWHGHVTALTVAPDYR--RLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 54 vG~~~~~~~~~~---~~~~~~i~~~~V~~~~r--g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
+|+-.+...... .+....+.++.-++.+- |+.+..+.+..-++.+++.|+..|++.-...++.-..+.-++|+-+
T Consensus 331 ~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV 410 (1027)
T PRK09525 331 VGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYV 410 (1027)
T ss_pred EEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEE
Confidence 666655554321 23345677777766544 4446678888889999999999999865555677788888999988
Q ss_pred EEEE
Q psy13682 129 YRTV 132 (175)
Q Consensus 129 ~~~~ 132 (175)
..+.
T Consensus 411 ~dE~ 414 (1027)
T PRK09525 411 VDEA 414 (1027)
T ss_pred EEec
Confidence 8764
No 298
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.90 E-value=1.8e+02 Score=17.10 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.6
Q ss_pred HHHHHHHH-hcCcEEEEE
Q psy13682 115 TVAITMYK-RLGYIVYRT 131 (175)
Q Consensus 115 ~~~~~~y~-k~Gf~~~~~ 131 (175)
.+|..||. .+||+....
T Consensus 13 ~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 13 AETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHhhCcEEEec
Confidence 57899996 599988754
No 299
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.68 E-value=1.6e+02 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=28.9
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+...|.--|...+..+++++.+.|++.+.+.+..
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5566777899999999999999999999887654
No 300
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.60 E-value=67 Score=20.86 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCcEEE
Q psy13682 115 TVAITMYKRLGYIVY 129 (175)
Q Consensus 115 ~~~~~~y~k~Gf~~~ 129 (175)
.....||++.||+-.
T Consensus 70 k~~~~FYEnyGf~A~ 84 (174)
T COG4904 70 KTVEAFYENYGFSAG 84 (174)
T ss_pred HHHHHHHHHcCCCcC
Confidence 456789999999876
No 301
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.47 E-value=1.9e+02 Score=16.98 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.5
Q ss_pred cCHHHHHHHH-hcCcEEEEEE
Q psy13682 113 SNTVAITMYK-RLGYIVYRTV 132 (175)
Q Consensus 113 ~n~~~~~~y~-k~Gf~~~~~~ 132 (175)
+-..+.+||. .+||+.....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 4468899998 5899987654
No 302
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.39 E-value=1.9e+02 Score=20.84 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=28.1
Q ss_pred cch-hccChHHHHHHHHHHHHHHcCccEEEEEEEe
Q psy13682 79 PDY-RRLGIAAELMSWLEDISEKKRAYFVDLFVRV 112 (175)
Q Consensus 79 ~~~-rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 112 (175)
+.. .|+--|...+..+++++.+.|++.+.+.+..
T Consensus 47 ~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 47 TDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 444 6777888999999999999999999887653
No 303
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=21.37 E-value=1.2e+02 Score=23.22 Aligned_cols=40 Identities=10% Similarity=-0.111 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEE
Q psy13682 89 ELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128 (175)
Q Consensus 89 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~ 128 (175)
.+...+++.+++.|++.|.++++..-..-..--.++||..
T Consensus 135 ~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~ 174 (381)
T PRK11197 135 GFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSG 174 (381)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCC
Confidence 4677788888889999999988754323333445667753
No 304
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=21.21 E-value=1.3e+02 Score=16.92 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.9
Q ss_pred cCHHHHHHHHh-cCcEEEEEEE
Q psy13682 113 SNTVAITMYKR-LGYIVYRTVL 133 (175)
Q Consensus 113 ~n~~~~~~y~k-~Gf~~~~~~~ 133 (175)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 44688999998 9999887753
No 305
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=21.20 E-value=1.8e+02 Score=16.57 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=17.2
Q ss_pred hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeE
Q psy13682 29 LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGK 60 (175)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~ 60 (175)
.......+.......+++.+.+|+++|.+...
T Consensus 12 ~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~ 43 (106)
T cd04582 12 LSDALGLMDDSDLRALTVVDADGQPLGFVTRR 43 (106)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCEEEEEeHH
Confidence 33343444433333444444478999998753
No 306
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.17 E-value=1.8e+02 Score=16.80 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=18.0
Q ss_pred ChHHHHHHHhcCCcEEEEEEcCCCcEEEEEEe
Q psy13682 28 GLSFYMQYLAHWPEYFQVAESPTGEIMGYIMG 59 (175)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~ 59 (175)
+.......+.......+++.+++|+++|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~ 43 (113)
T cd04607 12 SILDALRKIDKNALRIVLVVDENGRLLGTVTD 43 (113)
T ss_pred CHHHHHHHHHhcCcCEEEEECCCCCEEEEEEc
Confidence 33444444444333344455547899999874
No 307
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=21.14 E-value=2.6e+02 Score=18.72 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHcCccEEEEEEEecCHHH---HHHHHhcCcEEEEEEEeeccCC
Q psy13682 86 IAAELMSWLEDISEKKRAYFVDLFVRVSNTVA---ITMYKRLGYIVYRTVLEYYSGS 139 (175)
Q Consensus 86 ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~---~~~y~k~Gf~~~~~~~~~~~~~ 139 (175)
+|..+++.+.+...+.|+.-.+-+|..-|.+- ....++.||+.....+...-+|
T Consensus 44 va~ai~~~l~~~~~~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~VvP~~~AGG 100 (172)
T PF04260_consen 44 VAEAIFEALLEVLKERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTVVPVPHAGG 100 (172)
T ss_dssp HHHHHHHHHHHHHHTTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-B-BTTBB-
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEEEccCCCCc
Confidence 78889999999999988887776776666432 5678899999998877543333
No 308
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=21.14 E-value=2.1e+02 Score=17.43 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=23.3
Q ss_pred ECcchhccChHHHHHHHHHHHHHH-cCccEEEEEEEecCHHH---HHHHHhcCcEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEK-KRAYFVDLFVRVSNTVA---ITMYKRLGYIVYRT 131 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~~---~~~y~k~Gf~~~~~ 131 (175)
+.+..-++| -+.-+-.+++.|.+ .++.++.++...+.... .+-+.=.||+....
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 455555555 34556667788865 69999999887655443 44445578887755
No 309
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=21.12 E-value=1.7e+02 Score=16.48 Aligned_cols=40 Identities=3% Similarity=-0.105 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
|-.++..+.+.+.+.|..- .+...+....+++++.|+...
T Consensus 55 g~~~L~~l~~~~~~~g~~v---~i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 55 GLGVLLGAYKRARAAGGRL---VLVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hHHHHHHHHHHHHHcCCeE---EEEcCCHHHHHHHHHhCccee
Confidence 4456666777777666653 233556889999999998653
No 310
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=21.03 E-value=3e+02 Score=21.78 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.2
Q ss_pred cchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 79 PDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 79 ~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
+++|.-|+|.+++ +..|++++.+- .+|+.-..-.+.+|.++..+.+
T Consensus 364 ~D~RdygigAqIL-------~dLGI~~irLL--TNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 364 VDSREYGIGAQIL-------RDLGVRTMRLM--TNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred ccceehHHHHHHH-------HHcCCCEEEEC--CCCHHHHHHHhhCCCEEEEEec
Confidence 3444445554444 35688887774 4467667778899999987764
No 311
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.86 E-value=1.3e+02 Score=17.90 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.1
Q ss_pred cCHHHHHHHH-hcCcEEEEEE
Q psy13682 113 SNTVAITMYK-RLGYIVYRTV 132 (175)
Q Consensus 113 ~n~~~~~~y~-k~Gf~~~~~~ 132 (175)
+=.+|..||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 4468999998 9999987654
No 312
>PRK08815 GTP cyclohydrolase; Provisional
Probab=20.86 E-value=3.1e+02 Score=21.11 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=33.2
Q ss_pred ECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEEEEEE
Q psy13682 77 VAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 77 V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 133 (175)
..++.|.-|+|.++++ ..|++++.+- .+|+.-..-.+..|.++.++.+
T Consensus 294 ~~~D~RdygigAQIL~-------dLGV~kirLL--Tnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 294 FGPDERRYGSAVAMLR-------GLGITRVRLL--TNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred CCccceeeeHHHHHHH-------HcCCCeEEEC--CCCHHHHHHHHhCCCEEEEEec
Confidence 3556777777776664 4788888774 3466556667788989887764
No 313
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.49 E-value=1.4e+02 Score=19.38 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCc
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf 126 (175)
|+-|++++++.+...++..+.+.+...+......+...|.
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 5778888888888777777776554433333333334443
No 314
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=20.47 E-value=2.2e+02 Score=19.34 Aligned_cols=41 Identities=5% Similarity=-0.059 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcE
Q psy13682 87 AAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYI 127 (175)
Q Consensus 87 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~ 127 (175)
|+-|+.+.++.+.+.++..+.+.+......-.....+.|..
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~ 65 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVE 65 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcE
Confidence 46788888888887777776665544333333333334443
No 315
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.45 E-value=1.2e+02 Score=18.57 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHcCccEEE
Q psy13682 85 GIAAELMSWLEDISEKKRAYFVD 107 (175)
Q Consensus 85 Gig~~ll~~~~~~~~~~g~~~i~ 107 (175)
+++..+++.+.+.+++++.+++.
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV~ 27 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKVT 27 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 57889999999999987765443
No 316
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=20.43 E-value=2e+02 Score=16.81 Aligned_cols=39 Identities=3% Similarity=-0.085 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCccEEEEEEEecCHHHHHHHHhcCcEEE
Q psy13682 88 AELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129 (175)
Q Consensus 88 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 129 (175)
-.++..+.+.+++.|..- . ...-++...++++..|+...
T Consensus 61 l~~L~~~~~~~~~~~~~~-~--l~~~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 61 LGVLLGRYKQVRRVGGQL-V--LVSVSPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHHHHHhcCCEE-E--EEeCCHHHHHHHHHhChhhe
Confidence 345666666777766653 2 22456888999999999764
No 317
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.37 E-value=2e+02 Score=16.81 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=17.8
Q ss_pred hHHHHHHHhcCCcEEEEEEcCCCcEEEEEEeE
Q psy13682 29 LSFYMQYLAHWPEYFQVAESPTGEIMGYIMGK 60 (175)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~ 60 (175)
.......+.......+.+.+++|+++|++...
T Consensus 12 l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~ 43 (114)
T cd04619 12 LQRAAKILGEPGIDLVVVCDPHGKLAGVLTKT 43 (114)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCEEEEEehH
Confidence 33344444443333444444478999998753
No 318
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.27 E-value=1.9e+02 Score=16.46 Aligned_cols=30 Identities=7% Similarity=-0.104 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCcEEEEEEcCCCcEEEEEEe
Q psy13682 30 SFYMQYLAHWPEYFQVAESPTGEIMGYIMG 59 (175)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~ 59 (175)
....+.+.......+.+.+++|+++|++..
T Consensus 72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 72 MDAARVMFRTGISKLPVVDENNNLVGIITN 101 (107)
T ss_pred HHHHHHHHHhCCCeEeEECCCCeEEEEEEH
Confidence 333444443333334444447899999864
No 319
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=20.26 E-value=3.3e+02 Score=19.34 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred EEEECcchhccChHHHHHHHHHHHHHHcCccEEEEEEEecCH---HHHHHHHhcCcEEEEEEE
Q psy13682 74 ALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNT---VAITMYKRLGYIVYRTVL 133 (175)
Q Consensus 74 ~~~V~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~---~~~~~y~k~Gf~~~~~~~ 133 (175)
.++|.|-+-...-...+.++++ +.+..|+.++.+....... ..++-|++.|+......+
T Consensus 4 ~vCv~pl~~~~~~~~~l~e~ie-~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w~ 65 (285)
T PF01697_consen 4 VVCVSPLFGNEDDWLQLIEWIE-YHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPWP 65 (285)
T ss_pred EEEccchhcccccHHHHHHHHH-HHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEcc
Confidence 4666676665544555555554 4445699999988665444 456788899998876653
No 320
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=20.17 E-value=1.6e+02 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=18.9
Q ss_pred ccEEEEEEEecCHHHHHHHHh-cCcEEEEE
Q psy13682 103 AYFVDLFVRVSNTVAITMYKR-LGYIVYRT 131 (175)
Q Consensus 103 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 131 (175)
+.++.+.|. +=.++.+||++ +||+...+
T Consensus 5 i~Hi~l~V~-Dle~s~~FY~~~LG~~~~~~ 33 (303)
T TIGR03211 5 LGHVELRVL-DLEESLKHYTDVLGLEETGR 33 (303)
T ss_pred eeEEEEEeC-CHHHHHHHHHHhcCCEEeee
Confidence 344555543 33689999986 99998754
No 321
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=20.05 E-value=1e+02 Score=13.80 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=7.2
Q ss_pred cChHHHHHHHHHH
Q psy13682 84 LGIAAELMSWLED 96 (175)
Q Consensus 84 ~Gig~~ll~~~~~ 96 (175)
.|||....+.+.+
T Consensus 17 pGIG~~tA~~I~~ 29 (30)
T PF00633_consen 17 PGIGPKTANAILS 29 (30)
T ss_dssp TT-SHHHHHHHHH
T ss_pred CCcCHHHHHHHHh
Confidence 3677766665554
Done!