RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13682
(175 letters)
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 93.9 bits (233), Expect = 1e-24
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 1 MTTLRAFTCDDMFKFNNVNLDPLTET----YGLSFYMQYLAHWPEYFQVAES------PT 50
T+R D+ L+ T + ++ + L PE VAE+
Sbjct: 11 KVTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLD 70
Query: 51 GEIMGYIMG--KAEGHGDKWHGHVTALTVAPDYRRLGIAAELMS-WLEDISEKKRAYFVD 107
G+++G+++ GH+ L V P+YR GI L+ LE + E+ A +
Sbjct: 71 GKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIV 130
Query: 108 LFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKAL 151
L VR SN AI +Y++LG+ V + YY + DA M K L
Sbjct: 131 LEVRESNEAAIGLYRKLGFEVVKIRKNYY-ADGNGDALLMLKML 173
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 68.8 bits (169), Expect = 4e-16
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 50 TGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLF 109
GE++G+ + L V P+YR GI L+ LE+ + + ++L
Sbjct: 4 DGELVGFASLSIIDEE-GNVAEIEGLAVDPEYRGKGIGTALLEALEEYARELGLKRIELE 62
Query: 110 VRVSNTVAITMYKRLGY 126
V N AI +Y++LG+
Sbjct: 63 VLEDNEAAIALYEKLGF 79
>gnl|CDD|233477 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 131
Score = 67.4 bits (165), Expect = 5e-15
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 22 PLTETYGLSFYMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDY 81
P TE Y + +A G+++GY H+ + V P+Y
Sbjct: 16 PWTEAQFAEELANYHLCY----LLARI-GGKVVGYAGV----QIVLDEAHILNIAVKPEY 66
Query: 82 RRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPD 141
+ GI L+ L D ++ + + L VRVSN A +YK+LG+ + Y P
Sbjct: 67 QGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNE-IAIRRNYYPDPG 125
Query: 142 EDAYDM 147
EDA M
Sbjct: 126 EDAIVM 131
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 62.6 bits (153), Expect = 5e-13
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 36 LAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLE 95
L H P F VAE GE++G +MG +GH G L V PD+R GI L++ LE
Sbjct: 40 LNHDPSLFLVAEVG-GEVVGTVMGGYDGH----RGWAYYLAVHPDFRGRGIGRALVARLE 94
Query: 96 DISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
+ ++L VR N + Y+ LGY
Sbjct: 95 KKLIARGCPKINLQVREDNDAVLGFYEALGY 125
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 47.3 bits (113), Expect = 5e-08
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDL 108
GEI+G+ +G G ++ L V P+YR GI + L+ E+ + ++ A + L
Sbjct: 8 GEIVGFASLSPDGSGGD-TAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 42.3 bits (100), Expect = 7e-06
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 70 GHVTALTVAPDYRRLGIAAELMSWL-EDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128
G + AL P++RR G+ + L++ L I+E R V NT + +Y++LG+
Sbjct: 22 GELGALQTLPEHRRRGLGSRLVAALARGIAE--RGITPFAVVVAGNTPSRRLYEKLGFRK 79
Query: 129 YRT 131
Sbjct: 80 IDE 82
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 41.8 bits (99), Expect = 7e-06
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 41 EYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEK 100
E+F VA GEI+G++ + G ++ + V P+YR G ++L+ L + +
Sbjct: 3 EHFLVAYD-DGEIVGFLRLRPIGE----GAYIGGVAVDPEYRGQGYGSKLLRHLLEELGE 57
Query: 101 KRAYFVDLFVRVSNTVAITMYKRLGYIV 128
K + ++ A Y++LG+
Sbjct: 58 KPLFL------FAHPQAKKFYEKLGFEP 79
>gnl|CDD|225928 COG3393, COG3393, Predicted acetyltransferase [General function
prediction only].
Length = 268
Score = 44.4 bits (105), Expect = 9e-06
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 77 VAPDYRRLGIAAELMSWL-EDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135
P+YR G A L++ L + + + LFV N VA +Y+R+G+ EY
Sbjct: 209 THPEYRGKGYATALVATLAAKLLAEGKIPC--LFVNSDNPVARRIYQRIGFREIGEFREY 266
>gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103.
Members of this protein family belong to the GNAT
family of acetyltransferases. Each is part of a
conserved three-gene cassette sparsely distributed
across at least twenty different species known so far,
including alpha, beta, and gamma Proteobacteria,
Mycobacterium, and Prosthecochloris, which is a member
of the Chlorobi. The other two members of the cassette
are a probable protease and an asparagine synthetase
family protein.
Length = 547
Score = 41.3 bits (97), Expect = 1e-04
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 40 PEYFQVAESPTGEIMGYIMG--KAEGHGDKWHG-HVTALTVAPDYRRLGIAAELMSWL-E 95
Y + +G I+G +MG + D HG + L V P G+ L+ L E
Sbjct: 123 ITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAE 182
Query: 96 DISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
+ AY +DL V N AI +Y++LG+
Sbjct: 183 HFQSRGCAY-MDLSVMHDNEQAIALYEKLGF 212
>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
Provisional.
Length = 146
Score = 39.5 bits (93), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 75 LTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
+ V PDY+R G+ L+ L D EK+ + L VR SN AI +Y+ LG+
Sbjct: 69 IAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGF 120
>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
Length = 147
Score = 38.3 bits (89), Expect = 6e-04
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 48 SPTGEIMG---YIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAY 104
SPT I+G + G K GH+ + V P YR G+ L+S L +I+ Y
Sbjct: 58 SPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCY 117
Query: 105 FVDLFVRVSNTVAITMYKRLGY 126
V L + YK+LG+
Sbjct: 118 KVIL---DCTEDMVAFYKKLGF 136
>gnl|CDD|182877 PRK10975, PRK10975, TDP-fucosamine acetyltransferase; Provisional.
Length = 194
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAY 104
+ +G+I G++ + D + L V P + GI A LM + + +
Sbjct: 105 LLRDASGQIQGFVTLRELNDTD---ARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLT 161
Query: 105 FVDLFVRVSNTVAITMYKRLGYIVYRT 131
+ + ++ N A+ +Y R G + T
Sbjct: 162 RLRVATQMGNLAALRLYIRSGANIEST 188
>gnl|CDD|222309 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 118
Score = 36.6 bits (85), Expect = 0.001
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 70 GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
G + L V P YR GI L+ +E + K L ++ +A Y RLG+
Sbjct: 66 GRLDLLYVRPRYRGRGIGRALLDAIEAEARKGIKR---LTTE-ASLLARPFYLRLGF 118
>gnl|CDD|182266 PRK10146, PRK10146, aminoalkylphosphonic acid N-acetyltransferase;
Provisional.
Length = 144
Score = 36.4 bits (84), Expect = 0.002
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 64 HGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKR 123
H W G + L V P R L + ++L++W E+ + + A +L V A Y R
Sbjct: 71 HHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLR 130
Query: 124 LGY 126
GY
Sbjct: 131 EGY 133
>gnl|CDD|222199 pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 127
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 64 HGDKWH-GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYK 122
G + G +T + P+YR G+ +L+ ++ L + +Y+
Sbjct: 66 PGKTYPAGGITGVATYPEYRGRGLMRKLLRRALAEMRERGQPLSYLTPS-----SYPIYR 120
Query: 123 RLGY 126
R GY
Sbjct: 121 RFGY 124
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this
family are MshD, the acetyltransferase that catalyzes
the final step of mycothiol biosynthesis in various
members of the Actinomyctes, Mycothiol replaces
glutathione in these species [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 292
Score = 34.7 bits (80), Expect = 0.014
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 51 GEIMGYIMGKAEGHGDKWH------GHVTALTVAPDYRRLGIAAELMS----WLEDISEK 100
GE++G+ H K H G V + V P + G+ L L
Sbjct: 209 GELLGF-------HWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLP 261
Query: 101 KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135
V L+V N A+ Y++LG+ V + Y
Sbjct: 262 A----VMLYVEADNEAAVRTYEKLGFTVAEVDVAY 292
Score = 27.4 bits (61), Expect = 4.6
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 51 GEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAEL 90
I+GY G + L V P +RR GI L
Sbjct: 55 DPIVGY-ANLVPARGT--DPAMAELVVHPAHRRRGIGRAL 91
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 32.3 bits (74), Expect = 0.093
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 40 PEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRL-----GIAAELMSWL 94
P+Y V E E GHG H A + RL + E++ L
Sbjct: 218 PDYIIVGELRGREAFVLFQAMQTGHGTISTIH--ADSPELVLDRLTELPLNVPKEMLLKL 275
Query: 95 EDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVY 129
+ I E+ VD+ RVS I + V
Sbjct: 276 DVIIEQYADR-VDVLRRVSRIAEIVGGRLESEGVR 309
>gnl|CDD|225695 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 30.7 bits (70), Expect = 0.21
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 19/113 (16%)
Query: 51 GEIMGYIM-------GKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWLEDISEKKRA 103
GE++G+I+ G+ G W G + L V P+Y+ GI + L+ + A
Sbjct: 55 GEVVGHILFSPVTVGGEELG----WLG-LAPLAVDPEYQGQGIGSALVREGLEALRLAGA 109
Query: 104 YFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVH 156
V + T Y R G+ + Y+ P D + L
Sbjct: 110 SAVVVL------GDPTYYSRFGFEPAAG-AKLYAPGPVPDERFLALELGDGAL 155
>gnl|CDD|234945 PRK01346, PRK01346, hypothetical protein; Provisional.
Length = 411
Score = 30.3 bits (69), Expect = 0.50
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 69 HGHVTALTVAPDYRRLGIAAELM 91
VTA+TVAP +RR G+ LM
Sbjct: 79 AAGVTAVTVAPTHRRRGLLTALM 101
>gnl|CDD|224167 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 28.4 bits (64), Expect = 1.2
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 43 FQVAESPTGEIMGYIMGKAEGHGDKWH--GHVTALTVAPDYRRLGIAAELMSWLEDISEK 100
F + E G ++G A H G + +L V PDYR G L+ L + +
Sbjct: 42 FTIIERD-----GKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARE 96
Query: 101 ---KRAY 104
K +
Sbjct: 97 LGIKELF 103
>gnl|CDD|182263 PRK10140, PRK10140, putative acetyltransferase YhhY; Provisional.
Length = 162
Score = 28.0 bits (62), Expect = 1.9
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 32 YMQYLAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELM 91
+ + LA P Q+ G+++G++ + + H + V ++ G+A+ LM
Sbjct: 41 WQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALM 100
Query: 92 SWLEDISEK-KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEY 135
+ ++ + R ++L V V N AI +YK+ G+ + T +Y
Sbjct: 101 REMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKY 145
>gnl|CDD|236715 PRK10562, PRK10562, putative acetyltransferase; Provisional.
Length = 145
Score = 27.7 bits (62), Expect = 2.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 72 VTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIV 128
V AL VAP R GI LM + ++R + L V N A+ Y G+ +
Sbjct: 71 VGALFVAPKAVRRGIGKALMQHV-----QQRYPHLSLEVYQKNQRAVNFYHAQGFRI 122
>gnl|CDD|233472 TIGR01570, A_thal_3588, uncharacterized plant-specific domain
TIGR01570. This model represents a region of about 170
amino acids found at the C-terminus of a family of plant
proteins. These proteins typically have additional
highly divergent N-terminal regions rich in low
complexity sequence. PSI-BLAST reveals no clear
similarity to any characterized protein. At least 12
distinct members are found in Arabidopsis thaliana.
Length = 161
Score = 27.8 bits (62), Expect = 2.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 119 TMY---KRLGYIVYRTVLEYYSGSPDEDAYDMRKALSRDVHGKSVIPLKQAVRPEDVD 173
TMY +++GY V R S E+ + ALS+ G V+P + + D D
Sbjct: 71 TMYCNGRKVGYAVKR--------SASEEDMTVLTALSKVSVGAGVLPCGKELGGFDED 120
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 27.7 bits (62), Expect = 2.4
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 70 GHVTALTVAPDYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGY 126
GH+ AL V PD R G+ L+ + V N A+ YK++G+
Sbjct: 70 GHMEALFVDPDVRGCGVGRMLVE-----HALSLHPELTTDVNEQNEQAVGFYKKMGF 121
>gnl|CDD|117932 pfam09390, DUF1999, Protein of unknown function (DUF1999). This
family contains a putative Fe-S binding reductase whose
structure adopts an alpha and beta fold.
Length = 161
Score = 27.3 bits (60), Expect = 2.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPD 80
VAE E MG+ + +A GD+ V A+ +
Sbjct: 59 VAEGEGEEPMGFALAQAVWQGDRPTVLVRAIVLDEG 94
>gnl|CDD|220519 pfam10009, DUF2252, Uncharacterized protein conserved in bacteria
(DUF2252). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 383
Score = 27.6 bits (62), Expect = 3.6
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 80 DYRRLGIAAELMSWLEDISEKKRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGS 139
D +RL + L + +SEK V F R YR L Y+
Sbjct: 81 DLKRLAASLVLAARENGLSEKDARRLVRAFAR----------------SYRERLRDYAER 124
Query: 140 PDEDAYDMRKALSRDVHGK 158
D + +R V K
Sbjct: 125 DLLDRWYFTSDNTRGVVRK 143
>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein)
reductase. This model represents 3-oxoacyl-[ACP]
reductase, also called 3-ketoacyl-acyl carrier protein
reductase, an enzyme of fatty acid biosynthesis [Fatty
acid and phospholipid metabolism, Biosynthesis].
Length = 239
Score = 27.2 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 146 DMRKALSRDVHGK--SVIPLKQAVRPEDVDN 174
DM LS V K S IPL + PE+V N
Sbjct: 184 DMTDKLSEKVKKKILSQIPLGRFGTPEEVAN 214
>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin. Ferlins are
involved in vesicle fusion events. Ferlins and other
proteins, such as Synaptotagmins, are implicated in
facilitating the fusion process when cell membranes fuse
together. There are six known human Ferlins: Dysferlin
(Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3),
Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can
lead to a wide range of diseases including muscular
dystrophy (dysferlin), deafness (otoferlin), and
infertility (fer-1, fertilization factor-1).
Structurally they have 6 tandem C2 domains, designated
as (C2A-C2F) and a single C-terminal transmembrane
domain, though there is a new study that disputes this
and claims that there are actually 7 tandem C2 domains
with another C2 domain inserted between C2D and C2E.
In a subset of them (Dysferlin, Myoferlin, and Fer1)
there is an additional conserved domain called DysF. C2
domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-II topology.
Length = 127
Score = 26.4 bits (59), Expect = 5.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 137 SGSPDED------AYDMRKALSRDVHGKSVIPLKQAVR 168
+GSPD D D K + G + + L+ V
Sbjct: 50 AGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVS 87
>gnl|CDD|222340 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. This domain
has N-acetyltransferase activity. It has a GCN5-related
N-acetyltransferase (GNAT) fold.
Length = 169
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 77 VAPDYRRLGIAAELMSWLED 96
V PDY+R+G + L+ LE
Sbjct: 96 VHPDYQRMGYGSRLLELLEQ 115
>gnl|CDD|143498 cd06825, PLPDE_III_VanT, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, VanT and similar proteins.
This subfamily is composed of Enterococcus gallinarum
VanT and similar proteins. VanT is a membrane-bound
serine racemase (EC 5.1.1.18) that is essential for
vancomycin resistance in Enterococcus gallinarum. It
converts L-serine into its D-enantiomer (D-serine) for
peptidoglycan synthesis. The C-terminal region of this
protein contains a PLP-binding TIM-barrel domain
followed by beta-sandwich domain, which is homologous
to the fold type III PLP-dependent enzyme, bacterial
alanine racemase (AR). AR exists as homodimers with
active sites that lie at the interface between the TIM
barrel domain of one subunit and the beta-sandwich
domain of the other subunit. On the basis of this
similarity, it has been suggested that dimer formation
of VanT is required for its catalytic activity, and
that it catalyzes the racemization of serine in a
mechanistically similar manner to that of alanine by
bacterial AR. Some biochemical evidence indicates that
VanT also exhibits alanine racemase activity and plays
a role in the racemization of L-alanine. VanT contains
a unique N-terminal transmembrane domain, which may
function as an L-serine transporter. VanT serine
racemases are not related to eukaryotic serine
racemases, which are fold type II PLP-dependent
enzymes.
Length = 368
Score = 26.5 bits (59), Expect = 7.4
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 36 LAHWPEYFQVAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAA 88
L H + + T ++M + A GHGD VA ++GI
Sbjct: 11 LEHNVKEIKRLLPSTCKLMAVVKANAYGHGDV--------EVARVLEQIGIDF 55
>gnl|CDD|226011 COG3480, SdrC, Predicted secreted protein containing a PDZ domain
[Signal transduction mechanisms].
Length = 342
Score = 26.6 bits (59), Expect = 8.4
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 45 VAESPTGEIMGYIMGKAEGHGDKWHGHVTALTVAPDYRRLGIAAELMSWL---EDISEK- 100
E P GE + K EGH DK GH+ TV+ R + L +WL E+I +
Sbjct: 29 YIEGPGGEEDLKQVVKVEGHEDKTSGHLNLTTVS--VRDATLITYLYAWLSPQEEIVPRE 86
Query: 101 -------------KRAYFVDLFVRVSNTVAITMYKRLGYIVYRTVLEYYSGSPDED 143
+R F N YK G V T Y S ++
Sbjct: 87 QVTPPGESDEEYERRNQFY--METSQNAAIYAAYKYAGKPVEVTYAGVYVLSVIDN 140
>gnl|CDD|181187 PRK07984, PRK07984, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 262
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 146 DMRKALSRDVHGKSVIPLKQAVRPEDVDN 174
D RK L+ H ++V P+++ V EDV N
Sbjct: 202 DFRKMLA---HCEAVTPIRRTVTIEDVGN 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,331,845
Number of extensions: 876634
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 53
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)