BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13684
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
 pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
          Length = 427

 Score = 34.7 bits (78), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)

Query: 180 SKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGTREVL 239
           S I V+  + E  D  + PEN   +I        GA T  F +D +   + NV+GT +V+
Sbjct: 130 SNIEVIVGDFECXDDVVLPENXDTIIHA------GARTDHFGDDDEFE-KVNVQGTVDVI 182

Query: 240 NLAKQCPNLKMLTYVST--------------AFSHARSQIGEVVYEPKTHYKELLELSMI 285
            LA+Q  +   L YVST               FS A    G+++  P T  K   EL ++
Sbjct: 183 RLAQQ--HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVL 240


>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
 pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
          Length = 508

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)

Query: 180 SKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGTREVL 239
           S I V+  + E  D  + PEN   +I        GA T  F +D +   + NV+GT +V+
Sbjct: 211 SNIEVIVGDFECMDDVVLPENMDTIIHA------GARTDHFGDDDEFE-KVNVQGTVDVI 263

Query: 240 NLAKQCPNLKMLTYVST--------------AFSHARSQIGEVVYEPKTHYKELLELSMI 285
            LA+Q  +   L YVST               FS A    G+++  P T  K   EL ++
Sbjct: 264 RLAQQ--HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVL 321


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,872
Number of Sequences: 62578
Number of extensions: 297925
Number of successful extensions: 672
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)