RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13684
(298 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 142 bits (359), Expect = 4e-39
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+LLTG TGFLG+ ++++LLR ++ +VR + A RL F + E L
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
++ V+ + DLGL + L V++++ AA + + NV GT
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHE-LFGPNVAGT 194
Query: 236 REVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEP 272
E++ +A LK TYVSTA A + +
Sbjct: 195 AELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDA 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 4e-09
Identities = 54/334 (16%), Positives = 93/334 (27%), Gaps = 66/334 (19%)
Query: 2 DKVIHLLRPF-------STTDW---IFDSANILHTWNQLGPTEKAKFPFNIADLDWDEYL 51
D + F D I I H F +E +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 52 DRYVRGTLVHH---LQDSMETTVRKKAMERANRSGCTSKP-NFQQLYRNFHAMGKRLESV 107
++V L + L ++T R+ +M + N Q++ ++ RL+
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPY 137
Query: 108 EEF------YRDGE-ILLTGGTGFLGKLVIV-------KLLRSFPGIRKIY--MMVRDKK 151
+ R + +L+ G G GK + K+ KI+ +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNS 194
Query: 152 GASAEERLNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIV 211
+ E L L + K+ + ELR L S + L +V
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV 249
Query: 212 LHG---AATLR-FDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTAFSHARSQIGE 267
L A F+ ++ + T + + L+ A L + S +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEV---- 303
Query: 268 VVYEPKTHYKELLE--LSMICPDDPR-----LPL 294
K LL L D PR P
Sbjct: 304 ---------KSLLLKYLDCRPQDLPREVLTTNPR 328
Score = 54.1 bits (129), Expect = 2e-08
Identities = 50/303 (16%), Positives = 93/303 (30%), Gaps = 90/303 (29%)
Query: 18 FDSANILHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVHHLQDSMETTVRKKAME 77
F++ + + + + F + + D +QD ++ + K+ ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAF---VDNFD-------------CKDVQDMPKSILSKEEID 52
Query: 78 RANRSGCTSKPNFQQLYRNFHAM-GKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRS 136
SK R F + K+ E V++F + +L FL I R
Sbjct: 53 HI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS-PIKTEQRQ 104
Query: 137 FPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEVPDFKSKIHV--LPCNLELRD- 193
+ ++Y+ RD RL+ + F +K +V L L+LR
Sbjct: 105 PSMMTRMYIEQRD--------------------RLYNDNQVF-AKYNVSRLQPYLKLRQA 143
Query: 194 -LGLSPENKQMLISRVNIVLHG----------AATLRFDEDLQVAIQTNV--------RG 234
L L P N+++ G +Q + +
Sbjct: 144 LLELRPAK--------NVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNS 194
Query: 235 TREVL-NLAKQCPNL-KMLTYVSTAFSHARSQIGEVVYEPKTHYKE------LLELSMIC 286
VL L K + T S S+ + +I + E + K LL L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---- 250
Query: 287 PDD 289
+
Sbjct: 251 -LN 252
Score = 40.6 bits (94), Expect = 5e-04
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 46/161 (28%)
Query: 45 LDWDE----YLDRYVRGTLVHHLQDSMETTVRKKAMERANRSGCTSKPNFQQLYRNFHAM 100
D D+ YLD+Y + HHL K +E R F+ ++ +F +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHL----------KNIEHPERM-----TLFRMVFLDFRFL 503
Query: 101 GKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLN 160
+++ R L L +K + + + D E +N
Sbjct: 504 EQKI-------RHDSTAWNASGSILNTLQQLKFYKPY---------ICDNDPKY-ERLVN 546
Query: 161 ALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENK 201
A+ F +P + + +L + L E++
Sbjct: 547 AILD---F------LPKIEENLICSKY-TDLLRIALMAEDE 577
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 52.7 bits (127), Expect = 5e-08
Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 32/157 (20%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+ G TG LG + + G + ++ R L E
Sbjct: 16 YAVLGATGLLGHHAARAIRAA--GHD-LVLIHRPSSQIQR------------LAYLEPEC 60
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD-EDLQVAIQTNVRG 234
E+ D + + ++ V+ A Q + + +
Sbjct: 61 -----------RVAEMLD----HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQ 105
Query: 235 TREVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYE 271
T Q + + YV +A++ R G +E
Sbjct: 106 TNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPGHE 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 3e-06
Identities = 53/305 (17%), Positives = 97/305 (31%), Gaps = 94/305 (30%)
Query: 4 VIHLLRPFSTTDWIFDSANILHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVH-- 61
L+ F + + + + P++ +F + +L E+ + Y+ G +H
Sbjct: 57 PAELVGKF-----------LGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHAL 104
Query: 62 --HLQDSMETTVRKK---------AMERANRSGCTSKPNFQQLYRNFHAMGKRLESVEEF 110
L +TT+ K A A R K + L+R +L ++ F
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRP--FDKKSNSALFRAVGEGNAQLVAI--F 160
Query: 111 YRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIY----MMVRDKKGASAEERLNALFRNV 166
GG G F +R +Y ++V D SA E L+ L R
Sbjct: 161 ---------GGQGNTDDY--------FEELRDLYQTYHVLVGDLIKFSA-ETLSELIRTT 202
Query: 167 I-FERLH---------LEVP------DFKSKIHV-LP-------CNLE--LRDLGLSPEN 200
+ E++ LE P D+ I + P + + LG +P
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 201 KQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGTRE-VLNLAKQCPNLKMLTYVSTAFS 259
+ L GA + L A+ + E ++ + +L ++
Sbjct: 263 -------LRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKA--ITVLFFIG---- 307
Query: 260 HARSQ 264
R
Sbjct: 308 -VRCY 311
Score = 37.0 bits (85), Expect = 0.007
Identities = 45/270 (16%), Positives = 76/270 (28%), Gaps = 95/270 (35%)
Query: 9 RPFSTTDWIFDSANILHTWNQLGPTEKAKFP--FNIADLDW---------DEYLDRY-VR 56
D I SA L + + F NI L+W +YL +
Sbjct: 181 HVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--LEWLENPSNTPDKDYLLSIPIS 237
Query: 57 GTLVHHLQDSMETTVRKKAMERANRSGCTSKPNFQQLYRNFHAMGKRLESV--------- 107
L+ +Q + K G T P +L + +
Sbjct: 238 CPLIGVIQLAHYVVTAKL-------LGFT--P--GELRSYLKGATGHSQGLVTAVAIAET 286
Query: 108 ---EEFYRDG----EILLTGGTGFLGKLVIVKLLRS---FPGIRKIYMMVRDKKGASAEE 157
E F+ +L F+G +R +P ++ D S E
Sbjct: 287 DSWESFFVSVRKAITVLF-----FIG-------VRCYEAYPNTSLPPSILED----SLEN 330
Query: 158 R-------LNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVN- 209
L+ N+ + ++ +V N L P KQ+ IS VN
Sbjct: 331 NEGVPSPMLSI--SNL--TQEQVQD-------YVNKTNSHL------PAGKQVEISLVNG 373
Query: 210 ---IVLHGAATLRFDEDLQVAIQTNVRGTR 236
+V+ G + L + +R +
Sbjct: 374 AKNLVVSGPP-----QSLY-GLNLTLRKAK 397
Score = 30.4 bits (68), Expect = 0.88
Identities = 40/270 (14%), Positives = 76/270 (28%), Gaps = 103/270 (38%)
Query: 100 MGKRL----ESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFP-------------GIRK 142
MG L ++ ++ + + GF I+ ++ + P IR+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 143 IYM-MVRDKKGASA----------------------EERLN-------ALF--RNVIFER 170
Y M+ + + L+ AL FE
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 171 L--------------H-------L----EVPDFKSKIHVLPCNLELRDLGL----SPENK 201
L H L +V +S + V + R G+ +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VFYR--GMTMQVAVPRD 1800
Query: 202 QMLISRVNI--VLHGAATLRFD-EDLQVAIQTNVRGTREVL-----NLAKQCPNLKMLTY 253
++ S + + G F E LQ ++ + T ++ N N Y
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN----VEN---QQY 1853
Query: 254 VSTAFSHARSQIGEVVYEPKTHYKELLELS 283
V+ A + V+ K +++EL
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 44.2 bits (105), Expect = 3e-05
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 40/162 (24%)
Query: 104 LESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALF 163
+ + + + IL+TGGTG GK + K+L + +KI + RD E + + +
Sbjct: 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRD------ELKQSEMA 64
Query: 164 RNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDED 223
R+ + D +RD E + V+I +H AA L+
Sbjct: 65 MEFNDPRMRFFIGD-------------VRD----LERLNYALEGVDICIHAAA-LK---- 102
Query: 224 LQV---------AIQTNVRGTREVLNLAKQCPNLKMLTYVST 256
V I+TN+ G V+N + + + +ST
Sbjct: 103 -HVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALST 142
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 42.3 bits (100), Expect = 1e-04
Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 34/144 (23%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TG +G +G ++ L + I D + F L +V
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI---ASDIVQRDTG--------GIKFITL--DV 48
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATL--RFDEDLQVAIQTNVR 233
+ + + ++ + H A L + ++D +A + N+
Sbjct: 49 SNRDE----------IDRA--------VEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 234 GTREVLNLAKQCPNLKMLTYVSTA 257
GT +L AKQ ++ + ST
Sbjct: 91 GTYNILEAAKQH-RVEKVVIPSTI 113
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 41.9 bits (99), Expect = 1e-04
Identities = 28/138 (20%), Positives = 42/138 (30%), Gaps = 30/138 (21%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMM---VRDKKGASAEERLNALFRNV-IFERL 171
+L+TG GF+ V+ +LL G Y + R AS L +
Sbjct: 14 VLVTGANGFVASHVVEQLLEH--G----YKVRGTARS---ASKLANLQKRWDAKYPGRFE 64
Query: 172 HLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTN 231
V D L +I V H A+ + F +
Sbjct: 65 TAVVEDM-----------------LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPA 107
Query: 232 VRGTREVLNLAKQCPNLK 249
+ GT L A P++K
Sbjct: 108 IGGTLNALRAAAATPSVK 125
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 31/144 (21%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+ G G +G + + LR G + +K + +N + FE ++
Sbjct: 5 ILIIGACGQIGT-ELTQKLRKLYGTENVIA-SDIRKLN--TDVVN----SGPFEVVNAL- 55
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATL--RFDEDLQVAIQTNVR 233
DF + L + + ++ + AA L +++ A N+
Sbjct: 56 -DFNQ----------IEHL--------VEVHKITDIYLMAALLSATAEKNPAFAWDLNMN 96
Query: 234 GTREVLNLAKQCPNLKMLTYVSTA 257
VLNLAK +K + + S+
Sbjct: 97 SLFHVLNLAKAK-KIKKIFWPSSI 119
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 41.2 bits (97), Expect = 2e-04
Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 43/143 (30%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRD-KKGASAEERLNALFRNVIFERLHLE 174
L+TGG +G IV+ L + + RD +G +A ++L A + F L+
Sbjct: 7 ALVTGGNKGIGL-AIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRF--HQLD 62
Query: 175 VPDFKS-------------KIHVLPCNLELRDLGLSPENKQMLISRVN---IVLHGAATL 218
+ D +S + VL VN I A
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVL----------------------VNNAGIAFKVADPT 100
Query: 219 RFDEDLQVAIQTNVRGTREVLNL 241
F +V ++TN GTR+V
Sbjct: 101 PFHIQAEVTMKTNFFGTRDVCTE 123
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 29/148 (19%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+ + G +G G++++ ++L K+ ++ R K F ++ ++ EV
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLT----------FDEEAYKNVNQEV 69
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
DF ++ ++ T R + ++ +
Sbjct: 70 VDF-----------------EKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYV 112
Query: 236 REVLNLAKQCPNLKMLTYVSTAFSHARS 263
+ LAK K +S+ + S
Sbjct: 113 LKSAELAKAGGC-KHFNLLSSKGADKSS 139
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 13/94 (13%)
Query: 204 LISRVNIVLHGAA---TLRFDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTAFSH 260
L + V H A D + N T ++ K LK + Y +
Sbjct: 96 LQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG--- 152
Query: 261 ARSQIGEVVYE-PKTHYKELLELSMICPDDPRLP 293
+ E K E ++ + P
Sbjct: 153 ------CSIAEKTFDDAKATEETDIVSLHNNDSP 180
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 38.1 bits (89), Expect = 0.002
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 39/160 (24%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
I+L G +GF+G ++ + L G V A+ R+
Sbjct: 7 IVLIGASGFVGSALLNEALNR--GFE-----VT------------AVVRH---------- 37
Query: 176 PDFKSKIHVLPCNLELR--DLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVR 233
KI + +L+++ D+ S + + + V+ + D+ ++
Sbjct: 38 ---PEKIKIENEHLKVKKADV-SSLDEVCEVCKGADAVISAFNPGWNNPDI---YDETIK 90
Query: 234 GTREVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPK 273
+++ K+ + V A S + ++ +
Sbjct: 91 VYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDSGE 129
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 37.6 bits (88), Expect = 0.003
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 43/154 (27%)
Query: 116 ILLTGGTGFLGKLVIVKLL----------RSFPGIRKIYMMVRDKKGASAEERLNALFRN 165
+ +TGGTGFLG +I LL R+ P ++ + + GAS
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGAS----------- 52
Query: 166 VIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA--TLRFDED 223
E+LH F + DL +P++ I + H A+ E
Sbjct: 53 ---EKLHF----FNA------------DL-SNPDSFAAAIEGCVGIFHTASPIDFAVSEP 92
Query: 224 LQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
++ + V G +L +K Y S+
Sbjct: 93 EEIVTKRTVDGALGILKACVNSKTVKRFIYTSSG 126
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 37.5 bits (87), Expect = 0.003
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASA 155
+L+TG +G G++V KL +VR +G
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGKEK 45
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 36.1 bits (83), Expect = 0.010
Identities = 25/161 (15%), Positives = 42/161 (26%), Gaps = 60/161 (37%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
I++TG GF+GK + L + I+ + R + EE L +
Sbjct: 3 IVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ----TKEEELESALLKA--------- 47
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
DF ++H A R E + NV
Sbjct: 48 -DF--------------------------------IVHLAGVNRP-EHDKEFSLGNVSYL 73
Query: 236 REVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPKTHY 276
VL++ + + S + Y
Sbjct: 74 DHVLDILTRNTKKPAILLSS-----------SIQATQDNPY 103
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.8 bits (83), Expect = 0.012
Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 35/142 (24%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TG G LG+++ +L +R + D L+ N +
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILR-----LADL------SPLDPAGPNEECVQ----- 49
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
+L D +++ + ++H + ++ + +Q N+ G
Sbjct: 50 -------------CDLADANAVNA----MVAGCDGIVHLGG-ISVEKPFEQILQGNIIGL 91
Query: 236 REVLNLAKQCPNLKMLTYVSTA 257
+ A+ + + S+
Sbjct: 92 YNLYEAARAH-GQPRIVFASSN 112
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 35.7 bits (83), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASA 155
I +TG TG LG VI L+++ P + I +VR+ A A
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQ-IVAIVRNPAKAQA 40
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 35.3 bits (82), Expect = 0.014
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFR 164
I +TG TG LG LVI LL+ P + I +VR+ + AS R
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVRNVEKASTLADQGVEVR 50
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 34.9 bits (81), Expect = 0.019
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFR 164
I+LTG TG LG + + + + I ++ VR+ + + R R
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRGKVSVR 49
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 34.6 bits (80), Expect = 0.023
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 37/161 (22%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
I + G TG +GK ++ L + + IY R + + A
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTT--DYQ-IYAGARKVEQVPQYNNVKA-------------- 45
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
D+ +PE + ++ +++ + + ++ ++ G
Sbjct: 46 --------------VHFDVDWTPEEMAKQLHGMDAIINVSGSGGKS-----LLKVDLYGA 86
Query: 236 REVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPKTHY 276
+++ A++ +K +ST FS + ++ Y
Sbjct: 87 VKLMQAAEKA-EVKRFILLSTIFSLQPEKWIGAGFDALKDY 126
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase,
alternative splicing; HET: UD1; 1.90A {Homo sapiens}
SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 35.1 bits (80), Expect = 0.024
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 23 ILHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVHHLQDSMETTVRKKAMERANRS 82
+L WN+L ++ + + ++++E L+ + + + S ME R
Sbjct: 18 LLRFWNELEEAQQVELYAELQAMNFEE-LNFFFQ-KAIEGFNQSSHQKNVDARMEPVPRE 75
Query: 83 GCTSKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTG 123
S Q + + + G S + +LL GG G
Sbjct: 76 VLGSATRDQDQLQAWESEGLFQISQNKV---AVLLLAGGQG 113
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 34.2 bits (79), Expect = 0.038
Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TGG GF+G + + P + + V DK + + + + +L
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVV---VLDK--FRSNTLFSNNRPSSLGHFKNLI- 66
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNV 232
FK ++ ++ + +++ + + H AA T +++L ++TN
Sbjct: 67 -GFKGEVI----AADINNPLDL---RRLEKLHFDYLFHQAAVSDTTMLNQEL--VMKTNY 116
Query: 233 RGTREVLNLAKQCPNLKMLTYVSTA 257
+ +L +A+ K++ Y S+A
Sbjct: 117 QAFLNLLEIARSK-KAKVI-YASSA 139
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 33.9 bits (78), Expect = 0.052
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 24/132 (18%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
I + G G +G+ + +L++ G E+ + +F+
Sbjct: 17 IAIIGAAGMVGRKLTQRLVK------------DGSLGGKPVEKFTLI---DVFQPEAPAG 61
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATL--RFDEDLQVAIQTNVR 233
DL E ++++ +R +++ H AA + + D + N+
Sbjct: 62 FSGAVDARAA-------DLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLD 114
Query: 234 GTREVLNLAKQC 245
GTR + + +
Sbjct: 115 GTRYLFDAIRIA 126
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 33.7 bits (78), Expect = 0.056
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 32/145 (22%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
I++TGG GF+G ++ L GI I +V D + F N++ L +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK--GITDI--LVVDNL--KDGTK----FVNLV----DLNI 47
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNV 232
D+ K + ++ E V + H A T +D + N
Sbjct: 48 ADYMDKE-------DFLIQIMAGEEFG----DVEAIFHEGACSSTTEWDGKY--MMDNNY 94
Query: 233 RGTREVLNLAKQCPNLKMLTYVSTA 257
+ ++E+L+ + + L Y S+A
Sbjct: 95 QYSKELLHYCLER-EIPFL-YASSA 117
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 33.1 bits (76), Expect = 0.076
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEE 157
+++ GGTG G V LL G K+ ++ R+ + +A+E
Sbjct: 8 VVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKE 47
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 33.1 bits (76), Expect = 0.077
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+ G G + + ++ +L G MVR+ EE+ L + + +
Sbjct: 24 VLVVGANGKVARYLLSELKNK--GHE-PVAMVRN------EEQGPELRERGASDIVVANL 74
Query: 176 PD 177
+
Sbjct: 75 EE 76
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 33.4 bits (77), Expect = 0.077
Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 41/186 (22%)
Query: 78 RANRSGCTSKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSF 137
R + T+ F++ + + +G S I++TGG GF+G ++ L
Sbjct: 14 RGSGMKETAAAKFERQHMDSPDLGTGGGSG---IEGRMIIVTGGAGFIGSNIVKALNDK- 69
Query: 138 PGIRKIYM---MVRDKKGASAEERLNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDL 194
GI I + + K F N++ L + D+ K +
Sbjct: 70 -GITDILVVDNLKDGTK-----------FVNLV----DLNIADYMDKE-------DFLIQ 106
Query: 195 GLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNVRGTREVLNLAKQCPNLKML 251
++ E V + H A T +D + N + ++E+L+ + + L
Sbjct: 107 IMAGEEFG----DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLER-EIPFL 159
Query: 252 TYVSTA 257
Y S+A
Sbjct: 160 -YASSA 164
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 33.1 bits (76), Expect = 0.087
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 37/143 (25%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNV-IFERLHLE 174
+L+TG G +G + L L V + + + L
Sbjct: 5 LLVTGAAGGVGSAIR--------------------------PHLGTLAHEVRLSDIVDLG 38
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRG 234
+ +I +L D + L+ + ++H + + +Q N+ G
Sbjct: 39 AAEAHEEIVAC----DLADAQAVHD----LVKDCDGIIHLGG-VSVERPWNDILQANIIG 89
Query: 235 TREVLNLAKQCPNLKMLTYVSTA 257
+ A+ + + S+
Sbjct: 90 AYNLYEAARNL-GKPRIVFASSN 111
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 33.0 bits (76), Expect = 0.089
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 37/150 (24%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMM---VRDKKGASAEERLNALFRNVIFERLH 172
+ GGTGF+ L++ LL+ G Y + VRD +++++ L L
Sbjct: 12 ACVVGGTGFVASLLVKLLLQK--G----YAVNTTVRDP---DNQKKVSHLLELQELGDLK 62
Query: 173 LEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD-----EDLQVA 227
+ D + + I+ + V H A + F D+
Sbjct: 63 IFRADL-----------------TDELSFEAPIAGCDFVFHVATPVHFASEDPENDM--- 102
Query: 228 IQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
I+ ++G V+ + ++K + S+A
Sbjct: 103 IKPAIQGVVNVMKACTRAKSVKRVILTSSA 132
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 33.2 bits (75), Expect = 0.10
Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 117 LLTGGTGFLGKLVIVKLLR--SFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLE 174
L+ G TG +G + L + G K+Y + R + A E+
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHED----------------- 47
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD-EDLQVAIQTNVR 233
+ I+ + C++ P++ Q +S + V H + Q + N +
Sbjct: 48 -----NPINYVQCDI------SDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSK 96
Query: 234 GTREVLN-LAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPKTHYKELLELSMICPDDPRL 292
R VL+ + CPNLK ++ + + E + ++H E D PRL
Sbjct: 97 MFRNVLDAVIPNCPNLKHISLQTGRKHYMGPF--ESYGKIESHDPPYTE------DLPRL 148
Query: 293 P 293
Sbjct: 149 K 149
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 32.7 bits (74), Expect = 0.10
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNA 161
I + G G + + + LL I + R K E ++
Sbjct: 8 ITILGAAGQIAQXLTATLLTY--TDMHITLYGRQLKTRIPPEIIDH 51
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.5 bits (74), Expect = 0.11
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNA 161
+L+ G G + + VI +L I+ + R N+
Sbjct: 26 VLILGAGGQIARHVINQLADK-QTIK-QTLFARQPAKIHKPYPTNS 69
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 32.8 bits (75), Expect = 0.12
Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 23/158 (14%)
Query: 104 LESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALF 163
+ ++ L+ GG G +G+ V ++ + P +K++++ D +E N +
Sbjct: 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVV--D----ISE---NNMV 74
Query: 164 RNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA-----TL 218
+ + ++ + + + + VL+ +A +
Sbjct: 75 E--LVRDIRSSFGYINGDFQTFALDIGSIEY----DAFIKADGQYDYVLNLSALKHVRSE 128
Query: 219 RFDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVST 256
+ L I NV T + + + K VST
Sbjct: 129 KDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST 165
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 32.7 bits (75), Expect = 0.13
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 47/177 (26%)
Query: 86 SKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYM 145
+++L R + + L+ I +TG GF+ + +L G I
Sbjct: 12 GAYTYKELEREQYWPSENLK----------ISITGAGGFIASHIARRLKHE--GHYVI-- 57
Query: 146 MVRDKKGASAEERLNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLI 205
D K E + F + L V + K+
Sbjct: 58 -ASDWK---KNEHMTEDMFCDEFHLVDLRVMENCLKV----------------------T 91
Query: 206 SRVNIVLHGAAT-----LRFDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
V+ V + AA + + N + ++ A+ +K Y S+A
Sbjct: 92 EGVDHVFNLAADMGGMGFIQSNHSVI-MYNNTMISFNMIEAARIN-GIKRFFYASSA 146
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-
acetylglucosamine, N-acetylglucosamine-1-phosphate,
transferase; 1.90A {Candida albicans} PDB: 2yqh_A*
2yqj_A* 2yqs_A*
Length = 486
Score = 32.5 bits (73), Expect = 0.15
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 23 ILHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVHHLQDSMETTVRKKAMERANRS 82
+ ++ L ++ +F ++ ++ L V +Q S + + + N
Sbjct: 21 LFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVE----QAIQFSQTNSTSRNFTQLPNEQ 76
Query: 83 GCTSKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTG 123
++ + + +N+ +G + E +L+ GG G
Sbjct: 77 TASTLDLSKDILQNWTELGLKAIGNGEV---AVLLMAGGQG 114
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 31.9 bits (73), Expect = 0.16
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDK 150
+LL G TG G+ ++ ++L P + K+ R
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKA 41
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.9 bits (72), Expect = 0.17
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
I + G TG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.5 bits (71), Expect = 0.22
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
I + G TG G ++ +
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.5 bits (72), Expect = 0.23
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNA 161
I + G TG G + + +++ G + ++VRD +E A
Sbjct: 6 IAIFGATGQTGLTTLAQAVQA--GYE-VTVLVRDSSRLPSEGPRPA 48
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 31.7 bits (73), Expect = 0.25
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKG-ASAEERLNALFRNVIFERLHLE 174
+L+TGG GF+G I +L P I DK G S L L + R
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVI---NIDKLGYGSNPANLKDLEDD---PRYTFV 59
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD---EDLQVAIQTN 231
D + + EL L+ +V+ V+H AA D ++ + +N
Sbjct: 60 KGD----V----ADYELVK---------ELVRKVDGVVHLAAESHVDRSISSPEIFLHSN 102
Query: 232 VRGTREVLNLAKQCPNLKMLTYVST 256
V GT +L ++ +VST
Sbjct: 103 VIGTYTLLESIRRENPEVRFVHVST 127
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 31.4 bits (72), Expect = 0.29
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 30/147 (20%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMM---VRDKKGASAEERLNALFRNVIFERLH 172
+ +TG +GF+G ++++LL G Y + VRD + L L + L
Sbjct: 8 VCVTGASGFIGSWLVMRLLER--G----YTVRATVRDPTNVKKVKHLLDLPKAE--THLT 59
Query: 173 LEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD-EDLQVA-IQT 230
L D + I V H A + F+ +D + I+
Sbjct: 60 LWKADL-----------------ADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKP 102
Query: 231 NVRGTREVLNLAKQCPNLKMLTYVSTA 257
+ G ++ ++ L + S+A
Sbjct: 103 TIEGMLGIMKSCAAAKTVRRLVFTSSA 129
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.4 bits (71), Expect = 0.32
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 116 ILLTGGTGFLGKLVIVKLLRS-FPGIRKIYMMVRDKKGASAEERLNAL 162
ILL G TG++G+ V L P +++VR+ +S E+ L
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHP----TFLLVRESTASSNSEKAQLL 50
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 31.4 bits (71), Expect = 0.32
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 30/153 (19%)
Query: 109 EFYRDGEILLTGGTGFLGK-LVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVI 167
F++ + +TG TGF G L + L++ G + G S L A +
Sbjct: 5 SFWQGKRVFVTGHTGFKGGWLSL--WLQTM-GA-TVK-------GYS----LTAPTVPSL 49
Query: 168 FERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA----TLRFDED 223
FE + + + +RD + + + IV H AA L + E
Sbjct: 50 FETARV-----ADGMQSEIGD--IRDQNKL--LESIREFQPEIVFHMAAQPLVRLSYSEP 100
Query: 224 LQVAIQTNVRGTREVLNLAKQCPNLKMLTYVST 256
++ TNV GT +L + +K + +++
Sbjct: 101 VE-TYSTNVMGTVYLLEAIRHVGGVKAVVNITS 132
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.0 bits (70), Expect = 0.37
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+ G TG +G+ ++ +++ Y +VR A+ E L N + L
Sbjct: 5 ILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 176 PDFKSK 181
D
Sbjct: 62 GDINDH 67
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 30.7 bits (70), Expect = 0.47
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 67/162 (41%)
Query: 116 ILLTGGTGFLG-----KL------VIV---------KLLRSFPGIRKIYMMVRDKKGASA 155
+ +TG G +G L V+ + L+ P + + + D
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADH----- 78
Query: 156 EERLNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGA 215
+N L ++ + V+H A
Sbjct: 79 -ALVNQLIGDLQPDA----------------------------------------VVHTA 97
Query: 216 ATLRFDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
A+ + +D TN G V+ AK+ N+ Y TA
Sbjct: 98 ASYKDPDDWYNDTLTNCVGGSNVVQAAKKN-NVGRFVYFQTA 138
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 30.8 bits (69), Expect = 0.59
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRN 165
+L+ G TGF+G+ V L + R Y++ R + ++ ++ +
Sbjct: 13 VLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALED 59
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 30.4 bits (69), Expect = 0.62
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+ G GF+G + +LLR ++Y + + + R L
Sbjct: 3 VLILGVNGFIGNHLTERLLRE--DHYEVYGL-------------DIGSDAI--SRF-LNH 44
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAAT---LRFDED-LQVAIQTN 231
P F D+ + E + + + ++VL A + + + L+V + +
Sbjct: 45 PHFHFVEG---------DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-FELD 94
Query: 232 VRGTREVLNLAKQC 245
++ +
Sbjct: 95 FEENLRIIRYCVKY 108
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 30.4 bits (69), Expect = 0.67
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAE 156
+ +TG G +G+ + +L G + +VR +
Sbjct: 150 VAITGSRGLVGRALTAQLQTG--GHE-VIQLVRKEPKPGKR 187
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 30.2 bits (69), Expect = 0.70
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 228 IQTNVRGTREVLNLAKQCPNLKMLTYVST 256
+ NV GT +L +Q + + Y ST
Sbjct: 97 FEINVGGTLNLLEAVRQYNSNCNIIYSST 125
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 29.5 bits (65), Expect = 1.1
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 13 TTDWIFDSANI-----LHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVHHLQDSM 67
+W+ D + ++K + +A+ D D + L
Sbjct: 79 HPNWVLDCIAYKRLILIEPNYCFNVSQKMR---AVAEKRVDCLGDSFENDISETKLSSLY 135
Query: 68 ETTVRKKAMERAN-RSGCTSKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGT 122
++ + M S P F R + +++ + ++ +I L GG
Sbjct: 136 KSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTEDDIIEM-KIKLFGGK 190
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 29.4 bits (67), Expect = 1.2
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKG-ASAEERLNALFRNVIFERLHLE 174
I++TGG GF+G + + + P + V DK A + L ++ +R+ L
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVT---VLDKLTYAGNKANL----EAILGDRVELV 59
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD---EDLQVAIQTN 231
V D I + EL D L ++ + ++H AA D D I TN
Sbjct: 60 VGD----I----ADAELVD---------KLAAKADAIVHYAAESHNDNSLNDPSPFIHTN 102
Query: 232 VRGTREVLNLAKQ 244
GT +L A++
Sbjct: 103 FIGTYTLLEAARK 115
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.4 bits (67), Expect = 1.2
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 199 ENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
E+ ++ V+ V+H AAT + N T+ + + + N+ + Y ST
Sbjct: 54 EDLINQLNDVDAVVHLAATRGSQGKIS-EFHDNEILTQNLYDACYEN-NISNIVYASTI 110
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEE 157
I + G TG G +I G + V KG AEE
Sbjct: 8 IAVVGATGRQGASLIRVAAAV--GHH-VRAQVHSLKGLIAEE 46
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.1 bits (65), Expect = 1.5
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 116 ILLTGGTGFLGKLVIVKLLRS-FPGIRKIYMMVRDKKGASAE 156
+L+ GGTG++GK ++ + P Y++ R + ++ +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHP----TYVLFRPEVVSNID 44
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 116 ILLTGGTGFLGKLVIVKLLRS-FPGIRKIYMMVRDKKGASAEERLNAL 162
I++ GGTG++GK ++ L P ++ R S +
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHP----TFIYARPLTPDSTPSSVQLR 50
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 44 DLDWDEYLDRYVRGTLVHHLQDSMETTVRKKAMERANRSGCTSKPNFQQLYRNFHAMGKR 103
DL L R + + + T ++A+E A Q R G+R
Sbjct: 185 DLPETAELTRTPETSQPPQTPERLPQTPNRRALELAAAVLAGRDGEDQVAVRASGIYGRR 244
Query: 104 LESV-----EEFYRDGEILLTGGTGFLGKLV 129
+ + G +L+TGG G +G+ +
Sbjct: 245 VSRAAAAGAASWQPSGTVLITGGMGAIGRRL 275
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 28.5 bits (64), Expect = 2.8
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 33/133 (24%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TGG GF+G + KL+ + V D + + + FE ++ +V
Sbjct: 30 ILITGGAGFVGSHLTDKLMM-----DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 84
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLR---FDEDLQVAIQTNV 232
+ L V+ + H A+ + + ++TN
Sbjct: 85 VEP-------------------------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 119
Query: 233 RGTREVLNLAKQC 245
GT +L LAK+
Sbjct: 120 IGTLNMLGLAKRV 132
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 116 ILLTGGTGFLGKLVIVKLL 134
+L+TGG G++G +V+L+
Sbjct: 14 VLVTGGAGYIGSHTVVELI 32
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.3 bits (63), Expect = 3.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 116 ILLTGGTGFLGKLVIVKLLRS 136
IL+ GGTG++G ++ L+
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKL 34
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 28.3 bits (64), Expect = 3.1
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 26/145 (17%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKG-ASAEERLNALFRNVIFERLHLE 174
IL+TGG GF+G + +L+S+ + I D + + ++ + +
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETYKII---NFDALTYSGNLNNVKSIQDH---PNYYFV 80
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFD---EDLQVAIQTN 231
+ I N EL + + V ++++ AA D E+ TN
Sbjct: 81 KGE----I----QNGELLEHVIKER-------DVQVIVNFAAESHVDRSIENPIPFYDTN 125
Query: 232 VRGTREVLNLAKQCPNLKMLTYVST 256
V GT +L L K+ P++K++ VST
Sbjct: 126 VIGTVTLLELVKKYPHIKLV-QVST 149
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 28.2 bits (64), Expect = 3.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 116 ILLTGGTGFLGKLVIVKLL 134
+L+TGG G++G +++LL
Sbjct: 5 VLVTGGAGYIGSHTVLELL 23
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional
regulator, STRU genomics, PSI, protein structure
initiative; 2.15A {Bacillus cereus atcc 14579} SCOP:
a.4.1.9 a.121.1.1
Length = 183
Score = 27.7 bits (62), Expect = 3.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 191 LRDLGLSPENKQMLISRVNIVLHGAATLRF----------DEDLQVAIQTNVRGTRE 237
L+ GL EN + HG A++ D L V ++T ++G RE
Sbjct: 127 LQQYGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLRE 183
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 28.2 bits (63), Expect = 3.5
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 113 DGEILLTGGTGFLGKLV 129
DG +L+TG
Sbjct: 251 DGTVLVTGAEEPAAAEA 267
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.1 bits (63), Expect = 3.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 113 DGEILLTGGTGFLGKLV 129
G +L+TGGTG +G +
Sbjct: 226 TGTVLVTGGTGGVGGQI 242
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 27.6 bits (62), Expect = 4.9
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 204 LISRVNIVLHGAATLRFD---EDLQVAIQTNVRGTREVLNLAKQCPNLKMLTYVSTA 257
+ V+ VLH AA D + TN+ G +L A+ ++ TY +++
Sbjct: 99 ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASS 154
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 27.8 bits (63), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 116 ILLTGGTGFLGKLVIVKLL 134
IL+TGG G++G V+LL
Sbjct: 8 ILVTGGAGYIGSHTAVELL 26
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 27.8 bits (62), Expect = 5.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 113 DGEILLTGGTGFLGKLV 129
G +L+TGGTG +G V
Sbjct: 239 HGSVLVTGGTGGIGGRV 255
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 27.4 bits (62), Expect = 5.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 116 ILLTGGTGFLGKLVIVKLL 134
+L+TGG+G++G V+LL
Sbjct: 3 VLVTGGSGYIGSHTCVQLL 21
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 5.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 113 DGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEE 157
++TGG G G + L G +K+ + R G
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLR--GAQKLVLTSR--SGIRTGY 1924
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 27.2 bits (60), Expect = 7.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 121 GTGFLGKLVIVKLLRSFPGIRKIYMMVRDKK 151
G+G +G +++K+LR+ + M+ D
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 26.9 bits (60), Expect = 9.0
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 108 EEFYRDGEILLTGGTGFLGKLVIVKLLRSFP---------GIRKIYMMVRDKKGASAEER 158
EE ++ +++ TGG L KL I + G+ +Y + + E
Sbjct: 209 EEAKQEPKVIATGG---LAKL-ISEESNVIDVVDPFLTLKGLYMLYERNANLQHEKGEHH 264
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2
PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A
1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 26.0 bits (57), Expect = 9.4
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 86 SKPNFQQLYRNF-----HAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFP 138
KP ++Q+ +F + Y D L G F GK IV+ L S P
Sbjct: 3 DKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLP 60
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 26.9 bits (60), Expect = 9.7
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 151 KGASAEERLNALFRNVIFERLHLEVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNI 210
K A L +F + + L +P H L + + LI +I
Sbjct: 89 KAELAAASLKRIFPLMDATGVKLSIP---MIGHKLVNEEAQH---KDFDRLRALIKEHDI 142
Query: 211 VL 212
+
Sbjct: 143 IF 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,672,666
Number of extensions: 278454
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 99
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)