RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13684
(298 letters)
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 49.3 bits (117), Expect = 2e-07
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 44/186 (23%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TGG GF+G + KL+ + + D + + + FE ++ +V
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVV-----DNFFTGRKRNVEHWIGHENFELINHDV 58
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNV 232
+ L V+ + H A+ + + ++TN
Sbjct: 59 VEP-------------------------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 93
Query: 233 RGTREVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPKTHYKELLELSMICPDDPRL 292
GT +L LAK+ L ST+ EV +P+ H + + P PR
Sbjct: 94 IGTLNMLGLAKRVG--ARLLLASTS---------EVYGDPEVHPQSEDYWGHVNPIGPRA 142
Query: 293 PLMKAK 298
+ K
Sbjct: 143 CYDEGK 148
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 45.1 bits (106), Expect = 5e-06
Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 28/190 (14%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TGG GF+G V+ ++++ + + A E L+ + + + H ++
Sbjct: 3 ILITGGAGFIGSAVVRHIIKN--TQDTVV-NIDKLTYAGNLESLSDISESNRYNFEHADI 59
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNV 232
D + + + V+H AA R I+TN+
Sbjct: 60 CDSAEITRIFEQY------------------QPDAVMHLAAESHVDRSITGPAAFIETNI 101
Query: 233 RGTREVLNLAKQC-PNLKMLTYVSTAFSHARSQI--GEVVYEPKTHYKELLEL-SMICPD 288
GT +L +A++ L + F H + G++ + + L L +
Sbjct: 102 VGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAY 161
Query: 289 DPRLPLMKAK 298
P P +K
Sbjct: 162 APSSPYSASK 171
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 42.9 bits (100), Expect = 2e-05
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 20/146 (13%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGAS--AEERLNALFRNVIFERLHL 173
L+TG TG G + LL +KG +R + F + ++
Sbjct: 4 ALITGVTGQDGSYLAEFLL---------------EKGYEVHGIKRRASSFNTERVDHIYQ 48
Query: 174 EVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVR 233
+ K H+ +L L+ +++ V + + E + +
Sbjct: 49 DPHTCNPKFHLHYGDLSDTSN-LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAM 107
Query: 234 GTREVLNLAKQ--CPNLKMLTYVSTA 257
GT +L + ST+
Sbjct: 108 GTLRLLEAIRFLGLEKKTRFYQASTS 133
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 40.2 bits (93), Expect = 2e-04
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 24/167 (14%)
Query: 116 ILLTGGTGFLGKLVIVKLL-RSFPGIRKIYMMVRDK-KGASAEERLNALFRNVIFERLHL 173
+L+TGG GF+G + +LL ++P + ++V D A L + + +H
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 174 EVPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVR 233
++ D L + + R V +TNV+
Sbjct: 63 DIRDAGLLARELRGV-----------------DAIVHFAAESHVDRSIAGASVFTETNVQ 105
Query: 234 GTREVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVV----YEPKTHY 276
GT+ +L A +++ +VST + G EP + Y
Sbjct: 106 GTQTLLQCAVDAGVGRVV-HVSTNQVYGSIDSGSWTESSPLEPNSPY 151
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 36.3 bits (82), Expect = 0.003
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 103 RLESVEEFYR--DGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLN 160
L + E +R + + + G +G G++++ ++L K+ ++ R K E N
Sbjct: 2 ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKN 60
Query: 161 ALFRNVIFERLHLEVPDFKSKIHVLPCN 188
V FE+L F+ C
Sbjct: 61 VNQEVVDFEKLDDYASAFQGHDVGFCCL 88
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 36.1 bits (82), Expect = 0.003
Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 26/184 (14%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDK-KGASAEERLNALFRNVIFERLHLE 174
I++TGG GF+G + + + P + V DK A + L A+ + R+ L
Sbjct: 5 IIVTGGAGFIGSNFVHYVYNNHPDVHVT---VLDKLTYAGNKANLEAILGD----RVELV 57
Query: 175 VPDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRG 234
V D V + + + D I TN G
Sbjct: 58 VGDIADAELV--------------DKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIG 103
Query: 235 TREVLNLAKQCPNLKMLTYVSTAFSHARSQIGEVVYEPKTHYKELLELSMICPDDPRLPL 294
T +L +VST + + E + P + + +P P
Sbjct: 104 TYTLLE--AARKYDIRFHHVSTDEVYGDLPLREDL--PGHGEGPGEKFTAETNYNPSSPY 159
Query: 295 MKAK 298
K
Sbjct: 160 SSTK 163
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 35.7 bits (81), Expect = 0.005
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 16/141 (11%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
L+TG GF+G ++ LL+ + + + + + +L +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQ--RNLDEVRSLVSEKQWSNFKFIQ 76
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
D ++ + V + R D + TN+ G
Sbjct: 77 GDIRNLDDCNNA--------------CAGVDYVLHQAALGSVPRSINDPITSNATNIDGF 122
Query: 236 REVLNLAKQCPNLKMLTYVST 256
+L A+ S+
Sbjct: 123 LNMLIAARDAKVQSFTYAASS 143
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 35.4 bits (80), Expect = 0.006
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEE 157
I + G TG G +I G + V KG AEE
Sbjct: 6 IAVVGATGRQGASLIRVAAAV--GHH-VRAQVHSLKGLIAEE 44
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 35.2 bits (79), Expect = 0.007
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TG GF+ V+ +LL G K+ R V
Sbjct: 14 VLVTGANGFVASHVVEQLLEH--GY-KVRGTARSAS--KLANLQKRWDAKYPGRFETAVV 68
Query: 176 PDFKSKIHVLPCN 188
D +
Sbjct: 69 EDMLKQGAYDEVI 81
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 35.1 bits (79), Expect = 0.007
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 19/142 (13%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TGG GFLG + L + + R A + L+ L FE +H ++
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSR----KGATDNLHWLSSLGNFEFVHGDI 58
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
+ ++ + + + A ++ + + NV GT
Sbjct: 59 RNKND---------------VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGT 103
Query: 236 REVLNLAKQCPNLKMLTYVSTA 257
+L +Q + + Y ST
Sbjct: 104 LNLLEAVRQYNSNCNIIYSSTN 125
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 35.2 bits (79), Expect = 0.007
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TG +G G++V KL +VR + + +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRS------AQGKEKIGGEADVFIGDITD 58
Query: 176 PDFKSKIH 183
D +
Sbjct: 59 ADSINPAF 66
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 34.8 bits (78), Expect = 0.009
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNAL 162
ILL G TG++G+ V L +++VR+ +S E+ L
Sbjct: 6 ILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLL 49
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 212
Score = 34.0 bits (76), Expect = 0.012
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDK 150
+LL G TG G+ ++ ++L P + K+ R
Sbjct: 5 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKA 38
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 34.1 bits (77), Expect = 0.014
Identities = 14/142 (9%), Positives = 43/142 (30%), Gaps = 39/142 (27%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+ + G G +G + +L + G ++ + RD+ ++ F + ++++L
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAA 62
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
+ + I N+
Sbjct: 63 AKVGGIVANNTYPADF------------------------------------IYQNMMIE 86
Query: 236 REVLNLAKQCPNLKMLTYVSTA 257
+++ A Q ++ L ++ ++
Sbjct: 87 SNIIHAAHQN-DVNKLLFLGSS 107
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 34.4 bits (77), Expect = 0.014
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 110 FYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFE 169
F++ + +TG TGF G + + L + + + + E
Sbjct: 5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPTVPSLFETARVADGMQSE 61
Query: 170 RLHL 173
+
Sbjct: 62 IGDI 65
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 33.8 bits (76), Expect = 0.023
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
L+TG TG G + LL +++ +VR + R+ L++N
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSSSFNT-GRIEHLYKNPQAH------ 53
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGT 235
+ + + +L + N+ + + + + + + + GT
Sbjct: 54 --IEGNMKLHYGDLTDSTCLVKIINEVK-PTEIYNLGAQSHVKISFDLAEYTADVDGVGT 110
Query: 236 REVLNLAKQC--PNLKMLTYVSTA 257
+L+ K C N ST+
Sbjct: 111 LRLLDAVKTCGLINSVKFYQASTS 134
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 33.4 bits (75), Expect = 0.024
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 24/133 (18%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TGG+G++G V+LL++ + + D S L + ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVI-----ILDNLCNSKRSVLPVI------ERLGGKH 51
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAA---TLRFDEDLQVAIQTNV 232
P F ++R+ L + + ++ V+H A + NV
Sbjct: 52 PTF--------VEGDIRNEAL--MTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNV 101
Query: 233 RGTREVLNLAKQC 245
GT +++ +
Sbjct: 102 NGTLRLISAMRAA 114
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 32.9 bits (74), Expect = 0.031
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 117 LLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEVP 176
L+TGG +G IV+ L + +G +A ++L A + F +L ++
Sbjct: 7 LVTGGNKGIGL-AIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 65
Query: 177 DFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRFDEDLQVAIQTNVRGTR 236
+ +L++ I A F +V ++TN GTR
Sbjct: 66 QSIRALRDFLRKEY--------GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR 117
Query: 237 EVLNLA 242
+V
Sbjct: 118 DVCTEL 123
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 32.3 bits (72), Expect = 0.039
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
I + G TG G + + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 32.8 bits (73), Expect = 0.042
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAE 156
+L+ GGTG++GK ++ + Y++ R + ++ +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNID 43
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 32.3 bits (71), Expect = 0.061
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+++ GG G+ G + L + + + +VR + I +R+
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIAS-IHDRISRWK 62
Query: 176 PDFKSKIHVLPCNL 189
I + ++
Sbjct: 63 ALTGKSIELYVGDI 76
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 31.6 bits (70), Expect = 0.096
Identities = 12/73 (16%), Positives = 27/73 (36%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TGG G++G +++LL + I +G + + + + E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 176 PDFKSKIHVLPCN 188
D + +
Sbjct: 65 MDILDQGALQRLF 77
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 31.1 bits (68), Expect = 0.17
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
+L+ G GF+G + +LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 30.7 bits (68), Expect = 0.18
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 108 EEFYRDGEILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVI 167
+E+ G +L+TGGTG +G + L R G + ++ R A L A +
Sbjct: 4 DEWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAELEALG 61
Query: 168 FERLH 172
Sbjct: 62 ARTTV 66
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 30.8 bits (68), Expect = 0.18
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
+L+TGG G++G +V+L+
Sbjct: 4 VLVTGGAGYIGSHTVVELIE 23
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 30.9 bits (68), Expect = 0.19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
+L+ GG G++G + LLR
Sbjct: 5 VLVCGGAGYIGSHFVRALLR 24
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 30.4 bits (68), Expect = 0.19
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 23/138 (16%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
+L+TGGT +G ++ + G + + + V +
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL 68
Query: 176 PDFKSKIHVLPCNLELRDLGLSPENKQMLISRVNIVLHGAATLRF-------DEDLQVAI 228
+ K+ M +++I+++ +R ED I
Sbjct: 69 RPEREKLM--------------QTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHI 114
Query: 229 QTNVRGTREVLNLAKQCP 246
TN+ + LA
Sbjct: 115 STNLESAYHLSQLAHPLL 132
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase
{Escherichia coli [TaxId: 562]}
Length = 307
Score = 30.4 bits (66), Expect = 0.27
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
I++TGG GF+G ++ L
Sbjct: 2 IIVTGGAGFIGSNIVKALND 21
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 29.9 bits (66), Expect = 0.34
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 90 FQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLR 135
+++L R + + L+ I +TG GF+ + +L
Sbjct: 2 YKELEREQYWPSENLK----------ISITGAGGFIASHIARRLKH 37
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 29.7 bits (65), Expect = 0.39
Identities = 16/75 (21%), Positives = 29/75 (38%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
IL+TG LG ++ LL + ++ R+++ A E L N+ + L
Sbjct: 5 ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN 64
Query: 176 PDFKSKIHVLPCNLE 190
D K+ +
Sbjct: 65 FDAYDKLVADIEGVT 79
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 29.5 bits (64), Expect = 0.46
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
ILL G TG +G + L
Sbjct: 3 ILLFGKTGQVGWELQRSLAP 22
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 29.4 bits (64), Expect = 0.48
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
IL+TG G LG+ + +L
Sbjct: 4 ILITGANGQLGREIQKQLKG 23
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 27.5 bits (61), Expect = 0.96
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 90 FQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKLLRSFP 138
F Q Y ++ + YR+ +L + G IV+ L S P
Sbjct: 9 FTQFY--YNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLP 55
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 28.1 bits (61), Expect = 1.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
L+TG TG G + LL
Sbjct: 4 ALITGITGQDGSYLTEFLLG 23
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 28.0 bits (61), Expect = 1.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 116 ILLTGGTGFLGKLVIVKLLR 135
L+TG TG G + LL
Sbjct: 3 ALVTGITGQDGAYLAKLLLE 22
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 28.0 bits (62), Expect = 1.7
Identities = 11/111 (9%), Positives = 38/111 (34%), Gaps = 20/111 (18%)
Query: 23 ILHTWNQLGPTEKAKFPFNIADLDWDEYLDRYVRGTLVHHLQDSMETTVRKKAMERANRS 82
+L WN+L ++ + + ++++E L Q ++E + + +
Sbjct: 18 LLRFWNELEEAQQVELYAELQAMNFEE---------LNFFFQKAIEGFNQSSHQKNVDAR 68
Query: 83 GCTSKPNFQQLYRNFHAMGKRLESVEEFYRDGEILLTGGTGFLGKLVIVKL 133
+ + + ++ + +G ++ K+ ++ L
Sbjct: 69 MEPVPREV------LGSATRDQDQLQAWESEGLFQIS-----QNKVAVLLL 108
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 13 TTDWI-FDSANILHTWNQLG------PTEKAKFPFNIADLDWDEYLD 52
TTD + FD +ILH + + P A+ + D +D
Sbjct: 2 TTDDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCE-LILSDGRRLVD 47
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 26.2 bits (57), Expect = 4.1
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 121 GTGFLGKLVIVKLLRSFPGIRKIYMMVRDKK 151
G+G +G +++K+LR+ + M+ D
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.7 bits (55), Expect = 6.2
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 116 ILLTGGTGFLGKLVIVKLLRSFPGIRKIYMMVRDKKGASAEERLNALFRNVIFERLHLEV 175
ILLTG G +GK + K L S G++ I + ++ + ++ E ++
Sbjct: 7 ILLTGTPG-VGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 65
Query: 176 PDFKSKIHVLPCNLELRDL 194
D + + + + D
Sbjct: 66 LDNQMREGGVIVDYHGCDF 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,676
Number of extensions: 52560
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 44
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)