Query psy13685
Match_columns 72
No_of_seqs 113 out of 529
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:51:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1221|consensus 100.0 4.1E-29 8.8E-34 191.1 6.2 68 2-69 231-298 (467)
2 PLN02503 fatty acyl-CoA reduct 99.8 7.8E-22 1.7E-26 154.3 4.5 65 2-66 373-437 (605)
3 PLN02996 fatty acyl-CoA reduct 99.6 3.4E-16 7.3E-21 119.1 3.5 66 2-67 259-324 (491)
4 PF07993 NAD_binding_4: Male s 98.4 6.4E-08 1.4E-12 67.0 0.6 56 2-60 193-249 (249)
5 PRK07201 short chain dehydroge 56.8 9 0.0002 29.6 2.2 61 2-65 173-237 (657)
6 PF14475 Mso1_Sec1_bdg: Sec1-b 51.0 6.2 0.00013 21.5 0.4 8 12-19 34-41 (41)
7 PF07755 DUF1611: Protein of u 36.8 18 0.00039 27.0 1.0 33 23-66 149-181 (301)
8 PTZ00374 dihydroxyacetone phos 35.3 22 0.00048 31.0 1.4 39 28-66 236-275 (1108)
9 TIGR01746 Thioester-redct thio 30.7 22 0.00047 24.7 0.6 20 46-65 228-247 (367)
10 PF08992 QH-AmDH_gamma: Quinoh 28.9 28 0.00061 21.3 0.8 14 16-29 12-26 (78)
11 PF12266 DUF3613: Protein of u 21.9 34 0.00073 20.3 0.2 14 10-23 53-66 (67)
12 PF13594 Amidohydro_5: Amidohy 21.8 34 0.00074 19.0 0.2 10 12-21 30-39 (68)
13 PLN02427 UDP-apiose/xylose syn 20.6 96 0.0021 22.4 2.4 63 2-65 207-274 (386)
14 PF02169 LPP20: LPP20 lipoprot 20.1 66 0.0014 18.5 1.2 22 16-37 1-22 (92)
No 1
>KOG1221|consensus
Probab=99.95 E-value=4.1e-29 Score=191.07 Aligned_cols=68 Identities=37% Similarity=0.740 Sum_probs=66.4
Q ss_pred CcccEEEeecCCCccceecCCCCccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHhhhh
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWDGYN 69 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~~~~ 69 (72)
.|||||+|+++||+|||+||++||+|+++|+|+|++|++++|++.++|+||||+|+|++|+++|+++.
T Consensus 231 iRPsiI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~ 298 (467)
T KOG1221|consen 231 IRPSIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAG 298 (467)
T ss_pred EcCCceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999875
No 2
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.84 E-value=7.8e-22 Score=154.35 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=57.9
Q ss_pred CcccEEEeecCCCccceecCCCCccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
.|||||++|++||+|||+||.+...++++.+|+|++|.+++|+++++|+||||+|+|++|+++|.
T Consensus 373 vRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~ 437 (605)
T PLN02503 373 IRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAK 437 (605)
T ss_pred EcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHHHHHHHh
Confidence 69999999999999999999555555555667999999999999999999999999999999664
No 3
>PLN02996 fatty acyl-CoA reductase
Probab=99.61 E-value=3.4e-16 Score=119.10 Aligned_cols=66 Identities=27% Similarity=0.469 Sum_probs=64.2
Q ss_pred CcccEEEeecCCCccceecCCCCccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHhh
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWDG 67 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~~ 67 (72)
.||++|.++++||+|||+|+++|+.+++.++++|.++.+++|.+.+.|+||||.|+|++++++|+.
T Consensus 259 ~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~ 324 (491)
T PLN02996 259 IRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAH 324 (491)
T ss_pred ECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999999999999999974
No 4
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=98.41 E-value=6.4e-08 Score=67.01 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=40.7
Q ss_pred CcccEEEeecCCCccceecCCC-CccceeeccccceEEEEeeCCCccCceehhHHHHHHH
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLY-GPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNAL 60 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~-G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~l 60 (72)
.||++|+. +|..||.++.. ++..+.....+|.++..+.+++...|++|||+|+++|
T Consensus 193 ~Rp~~i~g---~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 193 YRPGIIVG---DSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp EEE-EEE----SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred EecCcccc---cCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 59999999 99999999999 8888889999999999999999999999999999986
No 5
>PRK07201 short chain dehydrogenase; Provisional
Probab=56.85 E-value=9 Score=29.61 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=33.6
Q ss_pred CcccEEEeecCCCccceecCCCCccce---eecccc-ceEEEEeeCCCccCceehhHHHHHHHHHHHH
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGL---VTGVQA-GIIRCISNARHIKADMVPADYVVNALICCTW 65 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl---~~~~g~-G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~ 65 (72)
+||+.|....+ .|..+++.++..+ +...+. .-.....++.+...++++||.++++++.++-
T Consensus 173 lRp~~v~G~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~ 237 (657)
T PRK07201 173 YRPAVVVGDSR---TGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMH 237 (657)
T ss_pred EcCCeeeecCC---CCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhc
Confidence 68988877533 3444554443211 111111 0011123444566799999999999877653
No 6
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=51.01 E-value=6.2 Score=21.48 Aligned_cols=8 Identities=25% Similarity=0.937 Sum_probs=6.6
Q ss_pred CCCcccee
Q psy13685 12 SDPIAGYI 19 (72)
Q Consensus 12 ~EP~PGWi 19 (72)
..|+|+|+
T Consensus 34 ~~~~P~WL 41 (41)
T PF14475_consen 34 GRPFPGWL 41 (41)
T ss_pred CCCCCCcC
Confidence 57999995
No 7
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=36.81 E-value=18 Score=26.96 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=23.8
Q ss_pred CCccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 23 YGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 23 ~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
.|.||++. .+.|+ ..|-||.|+++-++=.+-++
T Consensus 149 TGQTGimi-a~~Gv----------~iDav~~DFvaGavE~~v~~ 181 (301)
T PF07755_consen 149 TGQTGIMI-AGYGV----------PIDAVPSDFVAGAVEALVPE 181 (301)
T ss_dssp -SHHHHHC-HSEC------------GGGSBGGGHHHHHHHHHHH
T ss_pred cCCceEEE-ecCCe----------eccchhhhhHHHHHHHHHHh
Confidence 37888888 88887 88999999998876444443
No 8
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=35.26 E-value=22 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=32.8
Q ss_pred eeeccccceEEEEeeCCCccCceehhHHHHHH-HHHHHHh
Q psy13685 28 LVTGVQAGIIRCISNARHIKADMVPADYVVNA-LICCTWD 66 (72)
Q Consensus 28 l~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~-lI~aa~~ 66 (72)
+.+|...|.+|.++...---+-+.|+|...|+ +++.-|.
T Consensus 236 ~~~~~a~g~~~~~p~~~~~p~~~~p~d~a~~~a~~~~~~~ 275 (1108)
T PTZ00374 236 VCLGVALGTVKHLPVGFRDPATVTPLDVALNTALLAVLLL 275 (1108)
T ss_pred HHHHHhhhhhhcccccCCCCceeccHHHHHHHHHHHHHHH
Confidence 45788999999999998889999999999998 5555554
No 9
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=30.68 E-value=22 Score=24.65 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=16.5
Q ss_pred ccCceehhHHHHHHHHHHHH
Q psy13685 46 IKADMVPADYVVNALICCTW 65 (72)
Q Consensus 46 ~~~D~VPVD~vvn~lI~aa~ 65 (72)
...+++|||.++++++.++-
T Consensus 228 ~~~~~~~vddva~ai~~~~~ 247 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSS 247 (367)
T ss_pred cccCcccHHHHHHHHHHHHh
Confidence 46789999999999887654
No 10
>PF08992 QH-AmDH_gamma: Quinohemoprotein amine dehydrogenase, gamma subunit; InterPro: IPR015084 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the main structural domain of the QHNDH gamma subunit.; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1JJU_C 1PBY_C 1JMX_G 1JMZ_G.
Probab=28.93 E-value=28 Score=21.32 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=10.3
Q ss_pred cce-ecCCCCcccee
Q psy13685 16 AGY-IDNLYGPTGLV 29 (72)
Q Consensus 16 PGW-iDn~~G~~gl~ 29 (72)
||| +|.+-|..+|+
T Consensus 12 PGWEvD~fGG~a~LC 26 (78)
T PF08992_consen 12 PGWEVDAFGGVASLC 26 (78)
T ss_dssp SBSSSBTTSSSTTS-
T ss_pred CCceecCCccHhhcc
Confidence 788 78888877765
No 11
>PF12266 DUF3613: Protein of unknown function (DUF3613); InterPro: IPR022053 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.
Probab=21.92 E-value=34 Score=20.29 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=10.6
Q ss_pred ecCCCccceecCCC
Q psy13685 10 TWSDPIAGYIDNLY 23 (72)
Q Consensus 10 ~~~EP~PGWiDn~~ 23 (72)
|++.|+|.|.+.-.
T Consensus 53 SF~~~IPe~f~~~~ 66 (67)
T PF12266_consen 53 SFKHPIPEFFESDA 66 (67)
T ss_pred HccCCCchHhhccc
Confidence 67889999887643
No 12
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=21.83 E-value=34 Score=18.95 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=6.0
Q ss_pred CCCccceecC
Q psy13685 12 SDPIAGYIDN 21 (72)
Q Consensus 12 ~EP~PGWiDn 21 (72)
+-=+|||+|.
T Consensus 30 ~~v~PG~ID~ 39 (68)
T PF13594_consen 30 KYVMPGFIDM 39 (68)
T ss_dssp CEEEE-EEEE
T ss_pred CEEeCCeEee
Confidence 3347999995
No 13
>PLN02427 UDP-apiose/xylose synthase
Probab=20.58 E-value=96 Score=22.45 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=35.0
Q ss_pred CcccEEEeecCCCccceecCC-CCcccee----eccccceEEEEeeCCCccCceehhHHHHHHHHHHHH
Q psy13685 2 SAYKSVISTWSDPIAGYIDNL-YGPTGLV----TGVQAGIIRCISNARHIKADMVPADYVVNALICCTW 65 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~-~G~~gl~----~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~ 65 (72)
+||+.|.....+.++| ..+- .+...++ ...-.|---.+.++.+...|+|-||=++++++.+.-
T Consensus 207 lR~~~vyGp~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~ 274 (386)
T PLN02427 207 VRPFNWIGPRMDFIPG-IDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIE 274 (386)
T ss_pred ecccceeCCCCCcccc-ccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHh
Confidence 5788887776655444 1100 0101111 111123222345666777899999999999887654
No 14
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=20.09 E-value=66 Score=18.51 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=17.5
Q ss_pred cceecCCCCccceeeccccceE
Q psy13685 16 AGYIDNLYGPTGLVTGVQAGII 37 (72)
Q Consensus 16 PGWiDn~~G~~gl~~~~g~G~l 37 (72)
|-|....+-....+.|.|.|--
T Consensus 1 P~W~~~~~~~~~~l~a~G~~~~ 22 (92)
T PF02169_consen 1 PDWVNSPPPSQQYLYAVGSGSS 22 (92)
T ss_pred CCCCCCCCCCccEEEEEEcccC
Confidence 6787777888888888888763
Done!