Query psy13685
Match_columns 72
No_of_seqs 113 out of 529
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqv_A Probable peptide synthe 74.7 0.82 2.8E-05 33.2 0.7 60 2-66 274-344 (478)
2 3st7_A Capsular polysaccharide 71.7 1 3.5E-05 31.0 0.5 59 2-67 128-187 (369)
3 1i24_A Sulfolipid biosynthesis 70.9 2.4 8.3E-05 29.0 2.3 65 2-66 217-291 (404)
4 1hgv_A PH75 inovirus major coa 46.1 9.1 0.00031 20.2 1.3 12 61-72 33-44 (46)
5 3m2p_A UDP-N-acetylglucosamine 45.8 7.1 0.00024 25.8 1.1 56 2-64 158-213 (311)
6 1gy8_A UDP-galactose 4-epimera 44.7 23 0.0008 24.0 3.6 24 43-66 265-288 (397)
7 3fpf_A Mtnas, putative unchara 44.5 6.9 0.00023 27.8 0.9 16 6-22 258-273 (298)
8 3slg_A PBGP3 protein; structur 40.1 8.9 0.00031 26.0 0.9 65 2-66 196-261 (372)
9 2q1s_A Putative nucleotide sug 34.2 7.9 0.00027 26.6 -0.1 26 40-65 250-276 (377)
10 3enk_A UDP-glucose 4-epimerase 32.0 45 0.0015 22.0 3.4 24 43-66 230-253 (341)
11 4egb_A DTDP-glucose 4,6-dehydr 31.6 22 0.00075 23.6 1.7 33 34-66 224-256 (346)
12 3ruf_A WBGU; rossmann fold, UD 31.2 14 0.00048 24.7 0.7 34 33-66 228-261 (351)
13 1pby_C Quinohemoprotein amine 30.6 16 0.00055 21.5 0.8 15 15-29 12-27 (79)
14 2bll_A Protein YFBG; decarboxy 29.8 18 0.00063 23.8 1.1 33 34-66 206-238 (345)
15 1jmx_G Amine dehydrogenase; ox 29.5 16 0.00055 21.5 0.7 15 15-29 12-27 (79)
16 3vps_A TUNA, NAD-dependent epi 28.6 20 0.00068 23.3 1.1 31 34-64 194-224 (321)
17 4b8w_A GDP-L-fucose synthase; 28.2 38 0.0013 21.7 2.4 34 33-66 199-232 (319)
18 1uuz_A IVY, inhibitor of verte 26.8 16 0.00055 23.5 0.4 16 13-28 27-42 (137)
19 3ius_A Uncharacterized conserv 21.5 1E+02 0.0036 19.6 3.6 27 39-66 172-198 (286)
No 1
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=74.72 E-value=0.82 Score=33.19 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=36.3
Q ss_pred CcccEEEeec----CCCccceecCCCCccceeeccccceEE-EEeeC------CCccCceehhHHHHHHHHHHHHh
Q psy13685 2 SAYKSVISTW----SDPIAGYIDNLYGPTGLVTGVQAGIIR-CISNA------RHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 2 ~RPsIV~~~~----~EP~PGWiDn~~G~~gl~~~~g~G~lr-~~~~~------~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
+||+.|...- ..+..+|+..+- ......|... .++++ .+...|.+|||.++++++.++.+
T Consensus 274 vRpg~v~G~~~~~g~~~~~~~~~~l~-----~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~ 344 (478)
T 4dqv_A 274 FRCGMILADTSYAGQLNMSDWVTRMV-----LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGAR 344 (478)
T ss_dssp EEECEEECCSSSSSCCCTTBHHHHHH-----HHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHT
T ss_pred EECceeeCCCccCCcCCHHHHHHHHH-----HHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhh
Confidence 5787776532 234455554431 1223345542 22322 27788999999999999988764
No 2
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=71.72 E-value=1 Score=30.98 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=36.9
Q ss_pred CcccEEEeecCCCccceecCCCCccceeec-cccceEEEEeeCCCccCceehhHHHHHHHHHHHHhh
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGLVTG-VQAGIIRCISNARHIKADMVPADYVVNALICCTWDG 67 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl~~~-~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~~ 67 (72)
+||+.|....++|. +++....++. .-.|. .....+++...+++++|-++++++.+..+.
T Consensus 128 ~R~~~v~G~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~ 187 (369)
T 3st7_A 128 YRWPNLFGKWCKPN------YNSVIATFCYKIARNE-EIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187 (369)
T ss_dssp EEECEEECTTCCTT------SSCHHHHHHHHHHTTC-CCCCSCTTCEEEEEEHHHHHHHHHHHHHTC
T ss_pred EECCceeCCCCCCC------cchHHHHHHHHHHcCC-CeEecCCCeEEEEEEHHHHHHHHHHHHhCC
Confidence 58888888777662 2222222221 11222 122347788899999999999998887653
No 3
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=70.88 E-value=2.4 Score=29.04 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=41.0
Q ss_pred CcccEEEeecCCC---ccceecCCC--C-----ccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 2 SAYKSVISTWSDP---IAGYIDNLY--G-----PTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 2 ~RPsIV~~~~~EP---~PGWiDn~~--G-----~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
+||+.|......| -|+|++... | ...++-..-.|---.++++.+...|++.||=++++++.+.-+
T Consensus 217 vrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~ 291 (404)
T 1i24_A 217 LNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN 291 (404)
T ss_dssp EEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS
T ss_pred EecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhC
Confidence 5788777665544 356655442 1 112222333444334678888889999999999999887653
No 4
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=46.09 E-value=9.1 Score=20.24 Aligned_cols=12 Identities=17% Similarity=0.697 Sum_probs=10.5
Q ss_pred HHHHHhhhhccC
Q psy13685 61 ICCTWDGYNKYL 72 (72)
Q Consensus 61 I~aa~~~~~~~~ 72 (72)
+.+||+.+.+||
T Consensus 33 lsaaw~ya~rfl 44 (46)
T 1hgv_A 33 LSAAWKYAKRFL 44 (46)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 678999999987
No 5
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=45.85 E-value=7.1 Score=25.84 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=34.0
Q ss_pred CcccEEEeecCCCccceecCCCCccceeeccccceEEEEeeCCCccCceehhHHHHHHHHHHH
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNALICCT 64 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa 64 (72)
+||+.|......|. ++ ...++-..-.|..-.++++.+...+++.+|=++++++.+.
T Consensus 158 lRp~~v~G~~~~~~-~~------~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~ 213 (311)
T 3m2p_A 158 LRFAHLYGFNEKNN-YM------INRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYAL 213 (311)
T ss_dssp EEECEEECSCC--C-CH------HHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHT
T ss_pred EeeCceeCcCCCCC-CH------HHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHH
Confidence 46766665444332 11 1122223334554556688899999999999999987665
No 6
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=44.70 E-value=23 Score=24.01 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=20.0
Q ss_pred CCCccCceehhHHHHHHHHHHHHh
Q psy13685 43 ARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 43 ~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
+.+...|+|.||=++++++.+.-+
T Consensus 265 ~g~~~~~~v~v~Dva~a~~~~l~~ 288 (397)
T 1gy8_A 265 DGTCVRDYVHVCDLASAHILALDY 288 (397)
T ss_dssp TSSCEECEEEHHHHHHHHHHHHHH
T ss_pred CCCeeEeeEeHHHHHHHHHHHHhc
Confidence 567788999999999998877643
No 7
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=44.52 E-value=6.9 Score=27.77 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=5.8
Q ss_pred EEEeecCCCccceecCC
Q psy13685 6 SVISTWSDPIAGYIDNL 22 (72)
Q Consensus 6 IV~~~~~EP~PGWiDn~ 22 (72)
+|.+ .|.+.|+|+|+.
T Consensus 258 vv~a-~k~~~~~~~~~~ 273 (298)
T 3fpf_A 258 SVLV-FKCPDKGELNSK 273 (298)
T ss_dssp EEEE-EECC--------
T ss_pred EEEE-EccCCchHHHHH
Confidence 4444 999999999975
No 8
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=40.15 E-value=8.9 Score=25.97 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=39.4
Q ss_pred CcccEEEeecCCCccceecCCCCccc-eeeccccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 2 SAYKSVISTWSDPIAGYIDNLYGPTG-LVTGVQAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 2 ~RPsIV~~~~~EP~PGWiDn~~G~~g-l~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
+||+.|.....++..++-+...+... ++-..-.|---.++++.+...+++.||=++++++.+.-+
T Consensus 196 lRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~ 261 (372)
T 3slg_A 196 FRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIEN 261 (372)
T ss_dssp EEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHC
T ss_pred EccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhc
Confidence 47776666555543333222222211 222333454455677888899999999999999887654
No 9
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=34.21 E-value=7.9 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.8
Q ss_pred EeeCCCccCceehhHHHHHH-HHHHHH
Q psy13685 40 ISNARHIKADMVPADYVVNA-LICCTW 65 (72)
Q Consensus 40 ~~~~~~~~~D~VPVD~vvn~-lI~aa~ 65 (72)
++++.+...+++.||=++++ ++.+.-
T Consensus 250 ~~g~g~~~~~~i~v~Dva~a~i~~~~~ 276 (377)
T 2q1s_A 250 LENGGVATRDFIFVEDVANGLIACAAD 276 (377)
T ss_dssp CSGGGCCEECCEEHHHHHHHHHHHHHH
T ss_pred EeCCCCeEEeeEEHHHHHHHHHHHHHh
Confidence 45677788899999999999 766553
No 10
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=32.02 E-value=45 Score=21.97 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=20.4
Q ss_pred CCCccCceehhHHHHHHHHHHHHh
Q psy13685 43 ARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 43 ~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
+.+...|++.||=++++++.++-+
T Consensus 230 ~g~~~~~~i~v~Dva~a~~~~~~~ 253 (341)
T 3enk_A 230 DGTGVRDYIHVVDLARGHIAALDA 253 (341)
T ss_dssp TSSCEECEEEHHHHHHHHHHHHHH
T ss_pred CCCeeEeeEEHHHHHHHHHHHHHh
Confidence 678888999999999998877654
No 11
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=31.58 E-value=22 Score=23.65 Aligned_cols=33 Identities=9% Similarity=-0.093 Sum_probs=25.1
Q ss_pred cceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 34 AGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 34 ~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
.|---.++++.+...++|.||=++++++.+.-+
T Consensus 224 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 256 (346)
T 4egb_A 224 EGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHK 256 (346)
T ss_dssp TTCCCEEETTSCCEECEEEHHHHHHHHHHHHHH
T ss_pred cCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 343334567888899999999999998877653
No 12
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=31.22 E-value=14 Score=24.71 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=26.3
Q ss_pred ccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 33 QAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 33 g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
-.|-.-.++++.+...+++.||=++++++.++-.
T Consensus 228 ~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~ 261 (351)
T 3ruf_A 228 LKGDDVYINGDGETSRDFCYIDNVIQMNILSALA 261 (351)
T ss_dssp HHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTC
T ss_pred HcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhh
Confidence 3444445678888999999999999998876643
No 13
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=30.63 E-value=16 Score=21.54 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.7
Q ss_pred ccce-ecCCCCcccee
Q psy13685 15 IAGY-IDNLYGPTGLV 29 (72)
Q Consensus 15 ~PGW-iDn~~G~~gl~ 29 (72)
-||| +|.+.|..+|+
T Consensus 12 dPGWEvDafGgvasLC 27 (79)
T 1pby_C 12 DPGWEVDAFGAVSNLC 27 (79)
T ss_dssp SSBSSSBTTSSSTTSC
T ss_pred CCCceecCCccHhhcc
Confidence 3799 78888888775
No 14
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=29.81 E-value=18 Score=23.83 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=24.7
Q ss_pred cceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 34 AGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 34 ~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
.|.--.++++.+...+++.+|=++++++.+.-+
T Consensus 206 ~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~ 238 (345)
T 2bll_A 206 EGSPIKLIDGGKQKRCFTDIRDGIEALYRIIEN 238 (345)
T ss_dssp HTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHC
T ss_pred cCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhh
Confidence 343334567777888999999999998877653
No 15
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=29.54 E-value=16 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.7
Q ss_pred ccce-ecCCCCcccee
Q psy13685 15 IAGY-IDNLYGPTGLV 29 (72)
Q Consensus 15 ~PGW-iDn~~G~~gl~ 29 (72)
-||| +|.+-|..+|+
T Consensus 12 dPGWEvDafGgvasLC 27 (79)
T 1jmx_G 12 DPGWEVDAFGGVSSLC 27 (79)
T ss_dssp SSCSSSCTTSSSSSSC
T ss_pred CCCceecCCccHhhcc
Confidence 3789 78888888775
No 16
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=28.60 E-value=20 Score=23.34 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.2
Q ss_pred cceEEEEeeCCCccCceehhHHHHHHHHHHH
Q psy13685 34 AGIIRCISNARHIKADMVPADYVVNALICCT 64 (72)
Q Consensus 34 ~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa 64 (72)
.|---.++++.+...+++.+|=++++++.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 224 (321)
T 3vps_A 194 TRNELPVEGDGEQRRDFTYITDVVDKLVALA 224 (321)
T ss_dssp HHSEEEEETTSCCEECEEEHHHHHHHHHHGG
T ss_pred cCCCeEEeCCCCceEceEEHHHHHHHHHHHH
Confidence 4444456788889999999999999987654
No 17
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=28.19 E-value=38 Score=21.69 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=26.6
Q ss_pred ccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 33 QAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 33 g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
-.|---.++++.+...|++.||=++.+++.+.-+
T Consensus 199 ~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~ 232 (319)
T 4b8w_A 199 SSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLRE 232 (319)
T ss_dssp HHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHH
T ss_pred ccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhc
Confidence 3444445678888999999999999999887654
No 18
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=26.84 E-value=16 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=13.1
Q ss_pred CCccceecCCCCccce
Q psy13685 13 DPIAGYIDNLYGPTGL 28 (72)
Q Consensus 13 EP~PGWiDn~~G~~gl 28 (72)
+++|+|+.+.+|+.+=
T Consensus 27 ~~LP~WV~~~~GtssP 42 (137)
T 1uuz_A 27 SDVPKWVSDASGPSSP 42 (137)
T ss_dssp CSCCHHHHTTCSCBCC
T ss_pred CCCcHHHHhCCCCCCC
Confidence 5999999999886653
No 19
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=21.48 E-value=1e+02 Score=19.61 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=20.2
Q ss_pred EEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 39 CISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 39 ~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
.+..+ +...+++.+|=++++++.+.-+
T Consensus 172 ~~~~~-~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 172 RIIKP-GQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp EEECT-TCCBCEEEHHHHHHHHHHHHHS
T ss_pred ccCCC-CcccceEEHHHHHHHHHHHHhC
Confidence 34444 5678999999999998877643
Done!